config.log

config.log (text/plain), 40.94 KB, created by Agostino Sarubbo on 2015-03-16 08:18:58 UTC

This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by clipper configure 2.1, which was
generated by GNU Autoconf 2.69.  Invocation command line was

  $ /var/tmp/portage/sci-libs/clipper-2.1_p100511-r1/work/clipper-2.1/configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --libdir=/usr/lib64 --docdir=/usr/share/doc/clipper-2.1_p100511-r1 --enable-shared --disable-static --enable-ccp4 --enable-cif --enable-cns --enable-contrib --enable-minimol --enable-mmdb --enable-phs --with-mmdb=/usr --disable-debug

## --------- ##
## Platform. ##
## --------- ##

hostname = ns207970.ip-94-23-217.eu
uname -m = x86_64
uname -r = 3.2.65-hardened-r2-xxxx-std-ipv6-64
uname -s = Linux
uname -v = #1 SMP Thu Jan 1 10:21:55 CET 2015

/usr/bin/uname -p = Intel(R) Xeon(R) CPU E3-1245 V2 @ 3.40GHz
/bin/uname -X     = unknown

/bin/arch              = unknown
/usr/bin/arch -k       = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo      = unknown
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /usr/lib/portage/python2.7/ebuild-helpers
PATH: /usr/local/sbin
PATH: /usr/local/bin
PATH: /usr/sbin
PATH: /usr/bin
PATH: /sbin
PATH: /bin
PATH: /opt/bin
PATH: /usr/x86_64-pc-linux-gnu/gcc-bin/4.8.3
PATH: /usr/x86_64-pc-linux-gnu/gnat-gcc-bin/4.3
PATH: /usr/libexec/gnat-gcc/x86_64-pc-linux-gnu/4.3


## ----------- ##
## Core tests. ##
## ----------- ##

configure:2639: checking for a BSD-compatible install
configure:2707: result: /usr/bin/install -c
configure:2718: checking whether build environment is sane
configure:2773: result: yes
configure:2924: checking for a thread-safe mkdir -p
configure:2963: result: /bin/mkdir -p
configure:2970: checking for gawk
configure:2986: found /usr/bin/gawk
configure:2997: result: gawk
configure:3008: checking whether make sets $(MAKE)
configure:3030: result: yes
configure:3059: checking whether make supports nested variables
configure:3076: result: yes
configure:3190: checking build system type
configure:3204: result: x86_64-pc-linux-gnu
configure:3224: checking host system type
configure:3237: result: x86_64-pc-linux-gnu
configure:3278: checking how to print strings
configure:3305: result: printf
configure:3338: checking for style of include used by make
configure:3366: result: GNU
configure:3397: checking for x86_64-pc-linux-gnu-gcc
configure:3413: found /usr/bin/x86_64-pc-linux-gnu-gcc
configure:3424: result: x86_64-pc-linux-gnu-gcc
configure:3693: checking for C compiler version
configure:3702: x86_64-pc-linux-gnu-gcc --version >&5
x86_64-pc-linux-gnu-gcc (Gentoo 4.8.3 p1.1, pie-0.5.9) 4.8.3
Copyright (C) 2013 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:3713: $? = 0
configure:3702: x86_64-pc-linux-gnu-gcc -v >&5
Using built-in specs.
COLLECT_GCC=/usr/x86_64-pc-linux-gnu/gcc-bin/4.8.3/x86_64-pc-linux-gnu-gcc
COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-pc-linux-gnu/4.8.3/lto-wrapper
Target: x86_64-pc-linux-gnu
Configured with: /var/tmp/portage/sys-devel/gcc-4.8.3/work/gcc-4.8.3/configure --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/4.8.3 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.3/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.8.3 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.8.3/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.8.3/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.3/include/g++-v4 --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/4.8.3/python --enable-languages=c,c++,java,objc,fortran --enable-obsolete --enable-secureplt --disable-werror --with-system-zlib --enable-nls --without-included-gettext --enable-checking=release --with-bugurl=https://bugs.gentoo.org/ --with-pkgversion='Gentoo 4.8.3 p1.1, pie-0.5.9' --enable-libstdcxx-time --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --enable-multilib --with-multilib-list=m32,m64 --disable-altivec --disable-fixed-point --enable-targets=all --enable-libgomp --disable-libmudflap --disable-libssp --enable-lto --without-cloog --enable-libsanitizer
Thread model: posix
gcc version 4.8.3 (Gentoo 4.8.3 p1.1, pie-0.5.9) 
configure:3713: $? = 0
configure:3702: x86_64-pc-linux-gnu-gcc -V >&5
x86_64-pc-linux-gnu-gcc: error: unrecognized command line option '-V'
x86_64-pc-linux-gnu-gcc: fatal error: no input files
compilation terminated.
configure:3713: $? = 1
configure:3702: x86_64-pc-linux-gnu-gcc -qversion >&5
x86_64-pc-linux-gnu-gcc: error: unrecognized command line option '-qversion'
x86_64-pc-linux-gnu-gcc: fatal error: no input files
compilation terminated.
configure:3713: $? = 1
configure:3733: checking whether the C compiler works
configure:3755: x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fno-strict-aliasing  -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu conftest.c  >&5
configure:3759: $? = 0
configure:3807: result: yes
configure:3810: checking for C compiler default output file name
configure:3812: result: a.out
configure:3818: checking for suffix of executables
configure:3825: x86_64-pc-linux-gnu-gcc -o conftest -march=native -Wformat -Werror=format-security -g0 -O2 -fno-strict-aliasing  -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu conftest.c  >&5
configure:3829: $? = 0
configure:3851: result: 
configure:3873: checking whether we are cross compiling
configure:3881: x86_64-pc-linux-gnu-gcc -o conftest -march=native -Wformat -Werror=format-security -g0 -O2 -fno-strict-aliasing  -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu conftest.c  >&5
configure:3885: $? = 0
configure:3892: ./conftest
configure:3896: $? = 0
configure:3911: result: no
configure:3916: checking for suffix of object files
configure:3938: x86_64-pc-linux-gnu-gcc -c -march=native -Wformat -Werror=format-security -g0 -O2 -fno-strict-aliasing  conftest.c >&5
configure:3942: $? = 0
configure:3963: result: o
configure:3967: checking whether we are using the GNU C compiler
configure:3986: x86_64-pc-linux-gnu-gcc -c -march=native -Wformat -Werror=format-security -g0 -O2 -fno-strict-aliasing  conftest.c >&5
configure:3986: $? = 0
configure:3995: result: yes
configure:4004: checking whether x86_64-pc-linux-gnu-gcc accepts -g
configure:4024: x86_64-pc-linux-gnu-gcc -c -g  conftest.c >&5
configure:4024: $? = 0
configure:4065: result: yes
configure:4082: checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89
configure:4145: x86_64-pc-linux-gnu-gcc  -c -march=native -Wformat -Werror=format-security -g0 -O2 -fno-strict-aliasing  conftest.c >&5
configure:4145: $? = 0
configure:4158: result: none needed
configure:4180: checking dependency style of x86_64-pc-linux-gnu-gcc
configure:4291: result: none
configure:4306: checking for a sed that does not truncate output
configure:4370: result: /bin/sed
configure:4388: checking for grep that handles long lines and -e
configure:4446: result: /bin/grep
configure:4451: checking for egrep
configure:4513: result: /bin/grep -E
configure:4518: checking for fgrep
configure:4580: result: /bin/grep -F
configure:4615: checking for ld used by x86_64-pc-linux-gnu-gcc
configure:4682: result: /usr/x86_64-pc-linux-gnu/bin/ld
configure:4689: checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld
configure:4704: result: yes
configure:4716: checking for BSD- or MS-compatible name lister (nm)
configure:4770: result: /usr/bin/x86_64-pc-linux-gnu-nm -B
configure:4900: checking the name lister (/usr/bin/x86_64-pc-linux-gnu-nm -B) interface
configure:4907: x86_64-pc-linux-gnu-gcc -c -march=native -Wformat -Werror=format-security -g0 -O2 -fno-strict-aliasing  conftest.c >&5
configure:4910: /usr/bin/x86_64-pc-linux-gnu-nm -B "conftest.o"
configure:4913: output
0000000000000000 B some_variable
configure:4920: result: BSD nm
configure:4923: checking whether ln -s works
configure:4927: result: yes
configure:4935: checking the maximum length of command line arguments
configure:5066: result: 1572864
configure:5114: checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format
configure:5154: result: func_convert_file_noop
configure:5161: checking how to convert x86_64-pc-linux-gnu file names to toolchain format
configure:5181: result: func_convert_file_noop
configure:5188: checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files
configure:5195: result: -r
configure:5229: checking for x86_64-pc-linux-gnu-objdump
configure:5245: found /usr/bin/x86_64-pc-linux-gnu-objdump
configure:5256: result: x86_64-pc-linux-gnu-objdump
configure:5328: checking how to recognize dependent libraries
configure:5528: result: pass_all
configure:5573: checking for x86_64-pc-linux-gnu-dlltool
configure:5603: result: no
configure:5613: checking for dlltool
configure:5643: result: no
configure:5673: checking how to associate runtime and link libraries
configure:5700: result: printf %s\n
configure:5717: checking for x86_64-pc-linux-gnu-ar
configure:5733: found /usr/bin/x86_64-pc-linux-gnu-ar
configure:5744: result: x86_64-pc-linux-gnu-ar
configure:5825: checking for archiver @FILE support
configure:5842: x86_64-pc-linux-gnu-gcc -c -march=native -Wformat -Werror=format-security -g0 -O2 -fno-strict-aliasing  conftest.c >&5
configure:5842: $? = 0
configure:5845: x86_64-pc-linux-gnu-ar cru libconftest.a @conftest.lst >&5
configure:5848: $? = 0
configure:5853: x86_64-pc-linux-gnu-ar cru libconftest.a @conftest.lst >&5
x86_64-pc-linux-gnu-ar: conftest.o: No such file or directory
configure:5856: $? = 1
configure:5868: result: @
configure:5886: checking for x86_64-pc-linux-gnu-strip
configure:5902: found /usr/bin/x86_64-pc-linux-gnu-strip
configure:5913: result: x86_64-pc-linux-gnu-strip
configure:5985: checking for x86_64-pc-linux-gnu-ranlib
configure:6001: found /usr/bin/x86_64-pc-linux-gnu-ranlib
configure:6012: result: x86_64-pc-linux-gnu-ranlib
configure:6154: checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm -B output from x86_64-pc-linux-gnu-gcc object
configure:6307: x86_64-pc-linux-gnu-gcc -c -march=native -Wformat -Werror=format-security -g0 -O2 -fno-strict-aliasing  conftest.c >&5
configure:6310: $? = 0
configure:6314: /usr/bin/x86_64-pc-linux-gnu-nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm
configure:6317: $? = 0
configure:6383: x86_64-pc-linux-gnu-gcc -o conftest -march=native -Wformat -Werror=format-security -g0 -O2 -fno-strict-aliasing  -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu conftest.c conftstm.o >&5
configure:6386: $? = 0
configure:6424: result: ok
configure:6471: checking for sysroot
configure:6501: result: no
configure:6508: checking for a working dd
configure:6546: result: /bin/dd
configure:6550: checking how to truncate binary pipes
configure:6565: result: /bin/dd bs=4096 count=1
configure:6686: x86_64-pc-linux-gnu-gcc -c -march=native -Wformat -Werror=format-security -g0 -O2 -fno-strict-aliasing  conftest.c >&5
configure:6689: $? = 0
configure:6839: checking for x86_64-pc-linux-gnu-mt
configure:6869: result: no
configure:6879: checking for mt
configure:6909: result: no
configure:6929: checking if : is a manifest tool
configure:6935: : '-?'
configure:6943: result: no
configure:7585: checking how to run the C preprocessor
configure:7616: x86_64-pc-linux-gnu-gcc -E  conftest.c
configure:7616: $? = 0
configure:7630: x86_64-pc-linux-gnu-gcc -E  conftest.c
conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory
 #include <ac_nonexistent.h>
                            ^
compilation terminated.
configure:7630: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "clipper"
| #define PACKAGE_TARNAME "clipper"
| #define PACKAGE_VERSION "2.1"
| #define PACKAGE_STRING "clipper 2.1"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL ""
| #define PACKAGE "clipper"
| #define VERSION "2.1"
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:7655: result: x86_64-pc-linux-gnu-gcc -E
configure:7675: x86_64-pc-linux-gnu-gcc -E  conftest.c
configure:7675: $? = 0
configure:7689: x86_64-pc-linux-gnu-gcc -E  conftest.c
conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory
 #include <ac_nonexistent.h>
                            ^
compilation terminated.
configure:7689: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "clipper"
| #define PACKAGE_TARNAME "clipper"
| #define PACKAGE_VERSION "2.1"
| #define PACKAGE_STRING "clipper 2.1"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL ""
| #define PACKAGE "clipper"
| #define VERSION "2.1"
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:7718: checking for ANSI C header files
configure:7738: x86_64-pc-linux-gnu-gcc -c -march=native -Wformat -Werror=format-security -g0 -O2 -fno-strict-aliasing  conftest.c >&5
configure:7738: $? = 0
configure:7811: x86_64-pc-linux-gnu-gcc -o conftest -march=native -Wformat -Werror=format-security -g0 -O2 -fno-strict-aliasing  -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu conftest.c  >&5
configure:7811: $? = 0
configure:7811: ./conftest
configure:7811: $? = 0
configure:7822: result: yes
configure:7835: checking for sys/types.h
configure:7835: x86_64-pc-linux-gnu-gcc -c -march=native -Wformat -Werror=format-security -g0 -O2 -fno-strict-aliasing  conftest.c >&5
configure:7835: $? = 0
configure:7835: result: yes
configure:7835: checking for sys/stat.h
configure:7835: x86_64-pc-linux-gnu-gcc -c -march=native -Wformat -Werror=format-security -g0 -O2 -fno-strict-aliasing  conftest.c >&5
configure:7835: $? = 0
configure:7835: result: yes
configure:7835: checking for stdlib.h
configure:7835: x86_64-pc-linux-gnu-gcc -c -march=native -Wformat -Werror=format-security -g0 -O2 -fno-strict-aliasing  conftest.c >&5
configure:7835: $? = 0
configure:7835: result: yes
configure:7835: checking for string.h
configure:7835: x86_64-pc-linux-gnu-gcc -c -march=native -Wformat -Werror=format-security -g0 -O2 -fno-strict-aliasing  conftest.c >&5
configure:7835: $? = 0
configure:7835: result: yes
configure:7835: checking for memory.h
configure:7835: x86_64-pc-linux-gnu-gcc -c -march=native -Wformat -Werror=format-security -g0 -O2 -fno-strict-aliasing  conftest.c >&5
configure:7835: $? = 0
configure:7835: result: yes
configure:7835: checking for strings.h
configure:7835: x86_64-pc-linux-gnu-gcc -c -march=native -Wformat -Werror=format-security -g0 -O2 -fno-strict-aliasing  conftest.c >&5
configure:7835: $? = 0
configure:7835: result: yes
configure:7835: checking for inttypes.h
configure:7835: x86_64-pc-linux-gnu-gcc -c -march=native -Wformat -Werror=format-security -g0 -O2 -fno-strict-aliasing  conftest.c >&5
configure:7835: $? = 0
configure:7835: result: yes
configure:7835: checking for stdint.h
configure:7835: x86_64-pc-linux-gnu-gcc -c -march=native -Wformat -Werror=format-security -g0 -O2 -fno-strict-aliasing  conftest.c >&5
configure:7835: $? = 0
configure:7835: result: yes
configure:7835: checking for unistd.h
configure:7835: x86_64-pc-linux-gnu-gcc -c -march=native -Wformat -Werror=format-security -g0 -O2 -fno-strict-aliasing  conftest.c >&5
configure:7835: $? = 0
configure:7835: result: yes
configure:7849: checking for dlfcn.h
configure:7849: x86_64-pc-linux-gnu-gcc -c -march=native -Wformat -Werror=format-security -g0 -O2 -fno-strict-aliasing  conftest.c >&5
configure:7849: $? = 0
configure:7849: result: yes
configure:8105: checking for objdir
configure:8120: result: .libs
configure:8391: checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions
configure:8409: x86_64-pc-linux-gnu-gcc -c -march=native -Wformat -Werror=format-security -g0 -O2 -fno-strict-aliasing  -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C [enabled by default]
configure:8413: $? = 0
configure:8426: result: no
configure:8784: checking for x86_64-pc-linux-gnu-gcc option to produce PIC
configure:8791: result: -fPIC -DPIC
configure:8799: checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works
configure:8817: x86_64-pc-linux-gnu-gcc -c -march=native -Wformat -Werror=format-security -g0 -O2 -fno-strict-aliasing  -fPIC -DPIC -DPIC conftest.c >&5
configure:8821: $? = 0
configure:8834: result: yes
configure:8863: checking if x86_64-pc-linux-gnu-gcc static flag -static works
configure:8891: result: yes
configure:8906: checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o
configure:8927: x86_64-pc-linux-gnu-gcc -c -march=native -Wformat -Werror=format-security -g0 -O2 -fno-strict-aliasing  -o out/conftest2.o conftest.c >&5
configure:8931: $? = 0
configure:8953: result: yes
configure:8961: checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o
configure:9008: result: yes
configure:9041: checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries
configure:10300: result: yes
configure:10337: checking whether -lc should be explicitly linked in
configure:10345: x86_64-pc-linux-gnu-gcc -c -march=native -Wformat -Werror=format-security -g0 -O2 -fno-strict-aliasing  conftest.c >&5
configure:10348: $? = 0
configure:10363: x86_64-pc-linux-gnu-gcc -shared  -fPIC -DPIC conftest.o  -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep  -lc  \>/dev/null 2\>\&1
configure:10366: $? = 0
configure:10380: result: no
configure:10540: checking dynamic linker characteristics
configure:11130: x86_64-pc-linux-gnu-gcc -o conftest -march=native -Wformat -Werror=format-security -g0 -O2 -fno-strict-aliasing  -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -Wl,-rpath -Wl,/foo conftest.c  >&5
configure:11130: $? = 0
configure:11362: result: GNU/Linux ld.so
configure:11469: checking how to hardcode library paths into programs
configure:11494: result: immediate
configure:12042: checking whether stripping libraries is possible
configure:12047: result: yes
configure:12082: checking if libtool supports shared libraries
configure:12084: result: yes
configure:12087: checking whether to build shared libraries
configure:12112: result: yes
configure:12115: checking whether to build static libraries
configure:12119: result: no
configure:12181: checking for x86_64-pc-linux-gnu-xlc++
configure:12211: result: no
configure:12181: checking for x86_64-pc-linux-gnu-CC
configure:12211: result: no
configure:12181: checking for x86_64-pc-linux-gnu-cxx
configure:12211: result: no
configure:12181: checking for x86_64-pc-linux-gnu-c++
configure:12197: found /usr/bin/x86_64-pc-linux-gnu-c++
configure:12208: result: x86_64-pc-linux-gnu-c++
configure:12279: checking for C++ compiler version
configure:12288: x86_64-pc-linux-gnu-c++ --version >&5
x86_64-pc-linux-gnu-c++ (Gentoo 4.8.3 p1.1, pie-0.5.9) 4.8.3
Copyright (C) 2013 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:12299: $? = 0
configure:12288: x86_64-pc-linux-gnu-c++ -v >&5
Using built-in specs.
COLLECT_GCC=/usr/x86_64-pc-linux-gnu/gcc-bin/4.8.3/x86_64-pc-linux-gnu-c++
COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-pc-linux-gnu/4.8.3/lto-wrapper
Target: x86_64-pc-linux-gnu
Configured with: /var/tmp/portage/sys-devel/gcc-4.8.3/work/gcc-4.8.3/configure --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/4.8.3 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.3/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.8.3 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.8.3/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.8.3/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.3/include/g++-v4 --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/4.8.3/python --enable-languages=c,c++,java,objc,fortran --enable-obsolete --enable-secureplt --disable-werror --with-system-zlib --enable-nls --without-included-gettext --enable-checking=release --with-bugurl=https://bugs.gentoo.org/ --with-pkgversion='Gentoo 4.8.3 p1.1, pie-0.5.9' --enable-libstdcxx-time --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --enable-multilib --with-multilib-list=m32,m64 --disable-altivec --disable-fixed-point --enable-targets=all --enable-libgomp --disable-libmudflap --disable-libssp --enable-lto --without-cloog --enable-libsanitizer
Thread model: posix
gcc version 4.8.3 (Gentoo 4.8.3 p1.1, pie-0.5.9) 
configure:12299: $? = 0
configure:12288: x86_64-pc-linux-gnu-c++ -V >&5
x86_64-pc-linux-gnu-c++: error: unrecognized command line option '-V'
x86_64-pc-linux-gnu-c++: fatal error: no input files
compilation terminated.
configure:12299: $? = 1
configure:12288: x86_64-pc-linux-gnu-c++ -qversion >&5
x86_64-pc-linux-gnu-c++: error: unrecognized command line option '-qversion'
x86_64-pc-linux-gnu-c++: fatal error: no input files
compilation terminated.
configure:12299: $? = 1
configure:12303: checking whether we are using the GNU C++ compiler
configure:12322: x86_64-pc-linux-gnu-c++ -c -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fno-strict-aliasing  conftest.cpp >&5
configure:12322: $? = 0
configure:12331: result: yes
configure:12340: checking whether x86_64-pc-linux-gnu-c++ accepts -g
configure:12360: x86_64-pc-linux-gnu-c++ -c -g  conftest.cpp >&5
configure:12360: $? = 0
configure:12401: result: yes
configure:12426: checking dependency style of x86_64-pc-linux-gnu-c++
configure:12537: result: none
configure:12570: checking how to run the C++ preprocessor
configure:12597: x86_64-pc-linux-gnu-c++ -E  conftest.cpp
configure:12597: $? = 0
configure:12611: x86_64-pc-linux-gnu-c++ -E  conftest.cpp
conftest.cpp:23:28: fatal error: ac_nonexistent.h: No such file or directory
 #include <ac_nonexistent.h>
                            ^
compilation terminated.
configure:12611: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "clipper"
| #define PACKAGE_TARNAME "clipper"
| #define PACKAGE_VERSION "2.1"
| #define PACKAGE_STRING "clipper 2.1"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL ""
| #define PACKAGE "clipper"
| #define VERSION "2.1"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:12636: result: x86_64-pc-linux-gnu-c++ -E
configure:12656: x86_64-pc-linux-gnu-c++ -E  conftest.cpp
configure:12656: $? = 0
configure:12670: x86_64-pc-linux-gnu-c++ -E  conftest.cpp
conftest.cpp:23:28: fatal error: ac_nonexistent.h: No such file or directory
 #include <ac_nonexistent.h>
                            ^
compilation terminated.
configure:12670: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "clipper"
| #define PACKAGE_TARNAME "clipper"
| #define PACKAGE_VERSION "2.1"
| #define PACKAGE_STRING "clipper 2.1"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL ""
| #define PACKAGE "clipper"
| #define VERSION "2.1"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:12839: checking for ld used by x86_64-pc-linux-gnu-c++
configure:12906: result: /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
configure:12913: checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld
configure:12928: result: yes
configure:12983: checking whether the x86_64-pc-linux-gnu-c++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries
configure:14056: result: yes
configure:14092: x86_64-pc-linux-gnu-c++ -c -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fno-strict-aliasing  conftest.cpp >&5
configure:14095: $? = 0
configure:14621: checking for x86_64-pc-linux-gnu-c++ option to produce PIC
configure:14628: result: -fPIC -DPIC
configure:14636: checking if x86_64-pc-linux-gnu-c++ PIC flag -fPIC -DPIC works
configure:14654: x86_64-pc-linux-gnu-c++ -c -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fno-strict-aliasing  -fPIC -DPIC -DPIC conftest.cpp >&5
configure:14658: $? = 0
configure:14671: result: yes
configure:14694: checking if x86_64-pc-linux-gnu-c++ static flag -static works
configure:14722: result: yes
configure:14734: checking if x86_64-pc-linux-gnu-c++ supports -c -o file.o
configure:14755: x86_64-pc-linux-gnu-c++ -c -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fno-strict-aliasing  -o out/conftest2.o conftest.cpp >&5
configure:14759: $? = 0
configure:14781: result: yes
configure:14786: checking if x86_64-pc-linux-gnu-c++ supports -c -o file.o
configure:14833: result: yes
configure:14863: checking whether the x86_64-pc-linux-gnu-c++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries
configure:14903: result: yes
configure:15044: checking dynamic linker characteristics
configure:15793: result: GNU/Linux ld.so
configure:15846: checking how to hardcode library paths into programs
configure:15871: result: immediate
configure:15921: checking for x86_64-pc-linux-gnu-xlc
configure:15948: result: x86_64-pc-linux-gnu-gcc
configure:16023: checking for C compiler version
configure:16032: x86_64-pc-linux-gnu-gcc --version >&5
x86_64-pc-linux-gnu-gcc (Gentoo 4.8.3 p1.1, pie-0.5.9) 4.8.3
Copyright (C) 2013 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:16043: $? = 0
configure:16032: x86_64-pc-linux-gnu-gcc -v >&5
Using built-in specs.
COLLECT_GCC=/usr/x86_64-pc-linux-gnu/gcc-bin/4.8.3/x86_64-pc-linux-gnu-gcc
COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-pc-linux-gnu/4.8.3/lto-wrapper
Target: x86_64-pc-linux-gnu
Configured with: /var/tmp/portage/sys-devel/gcc-4.8.3/work/gcc-4.8.3/configure --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/4.8.3 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.3/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.8.3 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.8.3/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.8.3/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.3/include/g++-v4 --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/4.8.3/python --enable-languages=c,c++,java,objc,fortran --enable-obsolete --enable-secureplt --disable-werror --with-system-zlib --enable-nls --without-included-gettext --enable-checking=release --with-bugurl=https://bugs.gentoo.org/ --with-pkgversion='Gentoo 4.8.3 p1.1, pie-0.5.9' --enable-libstdcxx-time --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --enable-multilib --with-multilib-list=m32,m64 --disable-altivec --disable-fixed-point --enable-targets=all --enable-libgomp --disable-libmudflap --disable-libssp --enable-lto --without-cloog --enable-libsanitizer
Thread model: posix
gcc version 4.8.3 (Gentoo 4.8.3 p1.1, pie-0.5.9) 
configure:16043: $? = 0
configure:16032: x86_64-pc-linux-gnu-gcc -V >&5
x86_64-pc-linux-gnu-gcc: error: unrecognized command line option '-V'
x86_64-pc-linux-gnu-gcc: fatal error: no input files
compilation terminated.
configure:16043: $? = 1
configure:16032: x86_64-pc-linux-gnu-gcc -qversion >&5
x86_64-pc-linux-gnu-gcc: error: unrecognized command line option '-qversion'
x86_64-pc-linux-gnu-gcc: fatal error: no input files
compilation terminated.
configure:16043: $? = 1
configure:16047: checking whether we are using the GNU C compiler
configure:16075: result: yes
configure:16084: checking whether x86_64-pc-linux-gnu-gcc accepts -g
configure:16145: result: yes
configure:16162: checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89
configure:16238: result: none needed
configure:16260: checking dependency style of x86_64-pc-linux-gnu-gcc
configure:16371: result: none
configure:16387: checking whether make sets $(MAKE)
configure:16409: result: yes
configure:16654: checking for sqrt in -lm
configure:16679: x86_64-pc-linux-gnu-c++ -o conftest -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fno-strict-aliasing  -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu conftest.cpp -lm   >&5
configure:16679: $? = 0
configure:16688: result: yes
configure:16756: checking for fftw_print_max_memory_usage in fftw
configure:16782: x86_64-pc-linux-gnu-c++ -o conftest  -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fno-strict-aliasing  -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu conftest.cpp  -lm  -lrfftw -lfftw >&5
configure:16782: $? = 0
configure:16805: x86_64-pc-linux-gnu-c++ -o conftest  -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fno-strict-aliasing  -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu conftest.cpp  -lm  -lrfftw -lfftw >&5
conftest.cpp: In function 'int main()':
conftest.cpp:31:9: error: cannot convert 'fftw_real* {aka double*}' to 'float*' in assignment
    fftp = fftwp;
         ^
configure:16805: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "clipper"
| #define PACKAGE_TARNAME "clipper"
| #define PACKAGE_VERSION "2.1"
| #define PACKAGE_STRING "clipper 2.1"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL ""
| #define PACKAGE "clipper"
| #define VERSION "2.1"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_LIBM 1
| /* end confdefs.h.  */
| #include <fftw.h>
| int
| main ()
| {
| 
|    fftw_real *fftwp = 0;
|    float *fftp = 0;
|    fftp = fftwp;
| 
|   ;
|   return 0;
| }
configure:16813: result: no
configure:16820: checking for fftw_print_max_memory_usage in sfftw
configure:16835: x86_64-pc-linux-gnu-c++ -o conftest  -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fno-strict-aliasing  -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu conftest.cpp  -lm  -lsrfftw -lsfftw >&5
configure:16835: $? = 0
configure:16858: x86_64-pc-linux-gnu-c++ -o conftest  -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fno-strict-aliasing  -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu conftest.cpp  -lm  -lsrfftw -lsfftw >&5
configure:16858: $? = 0
configure:16866: result: yes
configure:16978: checking for CMMDBManager in MMDB
configure:17003: x86_64-pc-linux-gnu-c++ -o conftest -I/usr/include -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fno-strict-aliasing  -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu conftest.cpp -L/usr/lib -lmmdb -lm  >&5
configure:17003: $? = 0
configure:17026: result: yes
configure:17205: checking for ccp4_errno in CCP4
configure:17263: x86_64-pc-linux-gnu-c++ -o conftest  -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fno-strict-aliasing  -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu conftest.cpp -lccp4c -lm  >&5
/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.3/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -lccp4c
collect2: error: ld returned 1 exit status
configure:17263: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "clipper"
| #define PACKAGE_TARNAME "clipper"
| #define PACKAGE_VERSION "2.1"
| #define PACKAGE_STRING "clipper 2.1"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL ""
| #define PACKAGE "clipper"
| #define VERSION "2.1"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_LIBM 1
| #define FFTW_ENABLE_FLOAT 1
| /* end confdefs.h.  */
| #include "ccp4/ccp4_errno.h"
| int
| main ()
| {
| int a = ccp4_errno;  CCP4::ccp4_error("conftest");
|   ;
|   return 0;
| }
configure:17276: result: no
configure:17314: error: Failed to find ccp4 libs, but --enable-ccp4 was given 

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=x86_64-pc-linux-gnu
ac_cv_c_compiler_gnu=yes
ac_cv_cxx_compiler_gnu=yes
ac_cv_enable_debug=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=set
ac_cv_env_CFLAGS_value='-march=native -Wformat -Werror=format-security -g0 -O2 -fno-strict-aliasing'
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=set
ac_cv_env_CXXFLAGS_value='-march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fno-strict-aliasing'
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_LDFLAGS_set=set
ac_cv_env_LDFLAGS_value='-Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu'
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=set
ac_cv_env_build_alias_value=x86_64-pc-linux-gnu
ac_cv_env_host_alias_set=set
ac_cv_env_host_alias_value=x86_64-pc-linux-gnu
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_header_dlfcn_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_host=x86_64-pc-linux-gnu
ac_cv_lib_m_sqrt=yes
ac_cv_objext=o
ac_cv_path_EGREP='/bin/grep -E'
ac_cv_path_FGREP='/bin/grep -F'
ac_cv_path_GREP=/bin/grep
ac_cv_path_SED=/bin/sed
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_lt_DD=/bin/dd
ac_cv_path_mkdir=/bin/mkdir
ac_cv_prog_AR=x86_64-pc-linux-gnu-ar
ac_cv_prog_AWK=gawk
ac_cv_prog_CC=x86_64-pc-linux-gnu-gcc
ac_cv_prog_CPP='x86_64-pc-linux-gnu-gcc -E'
ac_cv_prog_CXX=x86_64-pc-linux-gnu-c++
ac_cv_prog_CXXCPP='x86_64-pc-linux-gnu-c++ -E'
ac_cv_prog_OBJDUMP=x86_64-pc-linux-gnu-objdump
ac_cv_prog_RANLIB=x86_64-pc-linux-gnu-ranlib
ac_cv_prog_STRIP=x86_64-pc-linux-gnu-strip
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_make_make_set=yes
am_cv_CC_dependencies_compiler_type=none
am_cv_CXX_dependencies_compiler_type=none
am_cv_make_support_nested_variables=yes
lt_cv_ar_at_file=@
lt_cv_archive_cmds_need_lc=no
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/x86_64-pc-linux-gnu/bin/ld
lt_cv_path_LDCXX='/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64'
lt_cv_path_NM='/usr/bin/x86_64-pc-linux-gnu-nm -B'
lt_cv_path_mainfest_tool=no
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_CXX=yes
lt_cv_prog_compiler_pic='-fPIC -DPIC'
lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC'
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_pic_works_CXX=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_compiler_static_works=yes
lt_cv_prog_compiler_static_works_CXX=yes
lt_cv_prog_gnu_ld=yes
lt_cv_prog_gnu_ldcxx=yes
lt_cv_sharedlib_from_linklib_cmd='printf %s\n'
lt_cv_shlibpath_overrides_runpath=yes
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[	 ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[	 ][	 ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \(.*\) .*$/  {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/  {"\1", (void *) \&\1},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \(.*\) .*$/  {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(lib.*\)$/  {"\1", (void *) \&\1},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/  {"lib\1", (void *) \&\1},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''
lt_cv_sys_global_symbol_to_import=
lt_cv_sys_max_cmd_len=1572864
lt_cv_to_host_file_cmd=func_convert_file_noop
lt_cv_to_tool_file_cmd=func_convert_file_noop
lt_cv_truncate_bin='/bin/dd bs=4096 count=1'

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /var/tmp/portage/sci-libs/clipper-2.1_p100511-r1/work/clipper-2.1/config/missing aclocal-1.13'
ALLOCA=''
AMDEPBACKSLASH=''
AMDEP_FALSE=''
AMDEP_TRUE='#'
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
AM_DEFAULT_VERBOSITY='1'
AM_V='$(V)'
AR='x86_64-pc-linux-gnu-ar'
AR_FLAGS='cru'
AUTOCONF='${SHELL} /var/tmp/portage/sci-libs/clipper-2.1_p100511-r1/work/clipper-2.1/config/missing autoconf'
AUTOHEADER='${SHELL} /var/tmp/portage/sci-libs/clipper-2.1_p100511-r1/work/clipper-2.1/config/missing autoheader'
AUTOMAKE='${SHELL} /var/tmp/portage/sci-libs/clipper-2.1_p100511-r1/work/clipper-2.1/config/missing automake-1.13'
AWK='gawk'
CC='x86_64-pc-linux-gnu-gcc'
CCDEPMODE='depmode=none'
CCP4_CXXFLAGS=''
CCP4_LIBS=''
CFLAGS='-march=native -Wformat -Werror=format-security -g0 -O2 -fno-strict-aliasing'
CLIPPER_CCP4_DIR='ccp4'
CLIPPER_CIF_DIR='cif'
CLIPPER_CNS_DIR='cns'
CLIPPER_CONTRIB_DIR='contrib'
CLIPPER_LT_VERSION='2:7:0'
CLIPPER_MINIMOL_DIR='minimol'
CLIPPER_MMDB_DIR='mmdb'
CLIPPER_PHS_DIR='phs'
CPP='x86_64-pc-linux-gnu-gcc -E'
CPPFLAGS=''
CXX='x86_64-pc-linux-gnu-c++'
CXXCPP='x86_64-pc-linux-gnu-c++ -E'
CXXDEPMODE='depmode=none'
CXXFLAGS='-march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fno-strict-aliasing'
CYGPATH_W='echo'
DEBUG_FALSE=''
DEBUG_TRUE=''
DEFS=''
DEPDIR='.deps'
DLLTOOL='false'
DSYMUTIL=''
DUMPBIN=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/bin/grep -E'
EXEEXT=''
FFTW_CXXFLAGS=''
FFTW_LIBS=' -lsrfftw -lsfftw'
FGREP='/bin/grep -F'
GREP='/bin/grep'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
LD='/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64'
LDFLAGS='-Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu'
LIBOBJS=''
LIBS='-lm '
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIPO=''
LN_S='ln -s'
LTLIBOBJS=''
MAKEINFO='${SHELL} /var/tmp/portage/sci-libs/clipper-2.1_p100511-r1/work/clipper-2.1/config/missing makeinfo'
MANIFEST_TOOL=':'
MKDIR_P='/bin/mkdir -p'
MMDB_CXXFLAGS='-I/usr/include'
MMDB_LIBS='-L/usr/lib -lmmdb'
NM='/usr/bin/x86_64-pc-linux-gnu-nm -B'
NMEDIT=''
OBJDUMP='x86_64-pc-linux-gnu-objdump'
OBJEXT='o'
OTOOL64=''
OTOOL=''
PACKAGE='clipper'
PACKAGE_BUGREPORT='[e-mail]'
PACKAGE_NAME='clipper'
PACKAGE_STRING='clipper 2.1'
PACKAGE_TARNAME='clipper'
PACKAGE_URL=''
PACKAGE_VERSION='2.1'
PATH_SEPARATOR=':'
POW_LIB=''
RANLIB='x86_64-pc-linux-gnu-ranlib'
SED='/bin/sed'
SET_MAKE=''
SHELL='/bin/sh'
STRIP='x86_64-pc-linux-gnu-strip'
VERSION='2.1'
ac_ct_AR=''
ac_ct_CC=''
ac_ct_CXX=''
ac_ct_DUMPBIN=''
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE=''
am__fastdepCC_FALSE=''
am__fastdepCC_TRUE='#'
am__fastdepCXX_FALSE=''
am__fastdepCXX_TRUE='#'
am__include='include'
am__isrc=' -I$(srcdir)'
am__leading_dot='.'
am__nodep=''
am__quote=''
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
bindir='${exec_prefix}/bin'
build='x86_64-pc-linux-gnu'
build_alias='x86_64-pc-linux-gnu'
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='pc'
datadir='/usr/share'
datarootdir='${prefix}/share'
docdir='/usr/share/doc/clipper-2.1_p100511-r1'
dvidir='${docdir}'
exec_prefix='NONE'
host='x86_64-pc-linux-gnu'
host_alias='x86_64-pc-linux-gnu'
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='pc'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='/usr/share/info'
install_sh='${SHELL} /var/tmp/portage/sci-libs/clipper-2.1_p100511-r1/work/clipper-2.1/config/install-sh'
libdir='/usr/lib64'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='/var/lib'
mandir='/usr/share/man'
mkdir_p='$(MKDIR_P)'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/usr'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "clipper"
#define PACKAGE_TARNAME "clipper"
#define PACKAGE_VERSION "2.1"
#define PACKAGE_STRING "clipper 2.1"
#define PACKAGE_BUGREPORT "[e-mail]"
#define PACKAGE_URL ""
#define PACKAGE "clipper"
#define VERSION "2.1"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_LIBM 1
#define FFTW_ENABLE_FLOAT 1

configure: exit 1