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Gentoo's Bugzilla – Attachment 398718 Details for
Bug 543018
sci-chemistry/pymol fails to compile with format-security
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pymol-1.7.0.1:20150312-092316.log
pymol-1.7.0.1:20150312-092316.log (text/plain), 216.37 KB, created by
Agostino Sarubbo
on 2015-03-12 09:26:56 UTC
(
hide
)
Description:
pymol-1.7.0.1:20150312-092316.log
Filename:
MIME Type:
Creator:
Agostino Sarubbo
Created:
2015-03-12 09:26:56 UTC
Size:
216.37 KB
patch
obsolete
> * Package: sci-chemistry/pymol-1.7.0.1 > * Repository: gentoo > * Maintainer: jlec@gentoo.org sci-chemistry@gentoo.org > * USE: abi_x86_64 amd64 elibc_glibc kernel_linux python_targets_python2_7 userland_GNU > * FEATURES: preserve-libs sandbox userpriv usersandbox > * python2_7: running distutils-r1_run_phase distutils-r1_python_compile >/usr/bin/python2.7 setup.py build >argparse not available >running build >running build_py >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/cc1.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/arc.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/xyz.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/mol.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/pdb.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/mmd.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/protein_amber99.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/bonds.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/cpv.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/gms.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/cif.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/mae.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/sdf.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/water_amber.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/io.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/charge.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/dictdb.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/models.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/mass.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/cex.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/protein_amber.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/gamess1.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/pkl.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/water_residues.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/bond_mmff.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/lst.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/place.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/neighbor.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/hetatm.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/mol2.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/protein.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/map.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/bond_amber.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/protein_residues.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/protein_mmff.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/solvate.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >copying modules/chempy/brick.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy/bmin >copying modules/chempy/bmin/state.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy/bmin >copying modules/chempy/bmin/realtime.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy/bmin >copying modules/chempy/bmin/util.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy/bmin >copying modules/chempy/bmin/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy/bmin >copying modules/chempy/bmin/commands.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy/bmin >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy/fragments >copying modules/chempy/fragments/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy/fragments >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy/fast >copying modules/chempy/fast/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy/fast >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy/champ >copying modules/chempy/champ/amber99.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy/champ >copying modules/chempy/champ/formal_charges.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy/champ >copying modules/chempy/champ/assign.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy/champ >copying modules/chempy/champ/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy/champ >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy/tinker >copying modules/chempy/tinker/state.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy/tinker >copying modules/chempy/tinker/realtime.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy/tinker >copying modules/chempy/tinker/keyword.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy/tinker >copying modules/chempy/tinker/amber.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy/tinker >copying modules/chempy/tinker/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/chempy/tinker >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/keywords.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/movie.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/constants.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/viewing.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/xray.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/headering.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/importing.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/povray.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/preset.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/keyboard.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/fitting.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/menu.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/setting.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/vfont.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/rpc.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/parsing.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/invocation.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/editor.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/colorramping.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/selector.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/querying.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/monitoring.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/shortcut.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/feedingback.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/controlling.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/util.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/xwin.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/gui.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/wizarding.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/editing.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/internal.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/locking.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/constants_palette.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/creating.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/moving.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/exporting.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/cmd.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/checking.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/cgo.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/helping.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/selecting.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/parser.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/externing.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/experimenting.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/completing.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/api.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/callback.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/commanding.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/computing.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >copying modules/pymol/m4x.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/opengl >copying modules/pymol/opengl/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/opengl >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/opengl/glu >copying modules/pymol/opengl/glu/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/opengl/glu >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/opengl/gl >copying modules/pymol/opengl/gl/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/opengl/gl >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/opengl/glut >copying modules/pymol/opengl/glut/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/opengl/glut >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/plugins >copying modules/pymol/plugins/installation.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/plugins >copying modules/pymol/plugins/managergui.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/plugins >copying modules/pymol/plugins/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/plugins >copying modules/pymol/plugins/legacysupport.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/plugins >copying modules/pymol/plugins/repository.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/plugins >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/embed >copying modules/pymol/embed/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/embed >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/embed/epymol >copying modules/pymol/embed/epymol/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/embed/epymol >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/embed/wxpymol >copying modules/pymol/embed/wxpymol/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/embed/wxpymol >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/wizard >copying modules/pymol/wizard/demo.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/wizard >copying modules/pymol/wizard/filter.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/wizard >copying modules/pymol/wizard/distance.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/wizard >copying modules/pymol/wizard/fedora.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/wizard >copying modules/pymol/wizard/measurement.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/wizard >copying modules/pymol/wizard/sculpting.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/wizard >copying modules/pymol/wizard/pair_fit.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/wizard >copying modules/pymol/wizard/mutagenesis.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/wizard >copying modules/pymol/wizard/density.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/wizard >copying modules/pymol/wizard/annotation.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/wizard >copying modules/pymol/wizard/renaming.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/wizard >copying modules/pymol/wizard/charge.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/wizard >copying modules/pymol/wizard/stereodemo.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/wizard >copying modules/pymol/wizard/dragging.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/wizard >copying modules/pymol/wizard/label.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/wizard >copying modules/pymol/wizard/benchmark.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/wizard >copying modules/pymol/wizard/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/wizard >copying modules/pymol/wizard/toggle.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/wizard >copying modules/pymol/wizard/cleanup.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/wizard >copying modules/pymol/wizard/box.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/wizard >copying modules/pymol/wizard/message.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/wizard >copying modules/pymol/wizard/pseudoatom.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/wizard >copying modules/pymol/wizard/security.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/wizard >copying modules/pymol/wizard/appearance.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/wizard >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/contrib >copying modules/pymol/contrib/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol/contrib >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol2 >copying modules/pymol2/make_cmd2.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol2 >copying modules/pymol2/cmd2.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol2 >copying modules/pymol2/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pymol2 >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pmg_tk >copying modules/pmg_tk/SetEditor.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pmg_tk >copying modules/pmg_tk/PMGApp.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pmg_tk >copying modules/pmg_tk/Setting.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pmg_tk >copying modules/pmg_tk/PyMOLMapLoad.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pmg_tk >copying modules/pmg_tk/Demo.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pmg_tk >copying modules/pmg_tk/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pmg_tk >copying modules/pmg_tk/ColorEditor.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pmg_tk >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pmg_tk/startup >copying modules/pmg_tk/startup/remote_pdb_load.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pmg_tk/startup >copying modules/pmg_tk/startup/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pmg_tk/startup >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pmg_tk/skins >copying modules/pmg_tk/skins/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pmg_tk/skins >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pmg_tk/skins/demo >copying modules/pmg_tk/skins/demo/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pmg_tk/skins/demo >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pmg_tk/skins/normal >copying modules/pmg_tk/skins/normal/ColorMap.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pmg_tk/skins/normal >copying modules/pmg_tk/skins/normal/volume.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pmg_tk/skins/normal >copying modules/pmg_tk/skins/normal/builder.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pmg_tk/skins/normal >copying modules/pmg_tk/skins/normal/ModalWindow.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pmg_tk/skins/normal >copying modules/pmg_tk/skins/normal/hist.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pmg_tk/skins/normal >copying modules/pmg_tk/skins/normal/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pmg_tk/skins/normal >copying modules/pmg_tk/skins/normal/ColorRampModel.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pmg_tk/skins/normal >copying modules/pmg_tk/skins/normal/SimpleColorChooser.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pmg_tk/skins/normal >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pmg_wx >copying modules/pmg_wx/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/pmg_wx >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/web >copying modules/web/pymolhttpd.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/web >copying modules/web/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/web >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/web/examples >copying modules/web/examples/justhttpd.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/web/examples >copying modules/web/examples/__init__.py -> /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/lib/web/examples >warning: build_py: byte-compiling is disabled, skipping. > >running build_ext >building 'pymol._cmd' extension >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7 >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/ov >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/ov/src >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer0 >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1 >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2 >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer3 >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer4 >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer5 >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/modules >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/modules/cealign >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/modules/cealign/src >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/build >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/build/generated >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin >creating /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/ov_utility.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/ov/src/ov_utility.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVHeapArray.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/ov/src/OVHeapArray.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Feedback.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer0/Feedback.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Raw.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer0/Raw.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Sphere.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer0/Sphere.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Queue.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer0/Queue.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/TypeFace.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/TypeFace.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Movie.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/Movie.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVHeap.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/ov/src/OVHeap.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Word.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer0/Word.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVRandom.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/ov/src/OVRandom.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/FontGLUTHel18.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/FontGLUTHel18.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVOneToAny.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/ov/src/OVOneToAny.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/ButMode.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/ButMode.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Matrix.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer0/Matrix.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/ShaderMgr.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer0/ShaderMgr.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Pixmap.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer0/Pixmap.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Vector.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer0/Vector.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVOneToOne.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/ov/src/OVOneToOne.o >In file included from /usr/include/python2.7/Python.h:8:0, > from layer0/os_python.h:28, > from layer0/ShaderMgr.c:18: >/usr/include/python2.7/pyconfig.h:1182:0: warning: "_POSIX_C_SOURCE" redefined [enabled by default] > #define _POSIX_C_SOURCE 200112L > ^ >In file included from /usr/include/malloc.h:22:0, > from layer0/os_predef.h:106, > from layer0/os_gl_pre.h:4, > from layer0/os_gl.h:4, > from layer0/ShaderMgr.c:17: >/usr/include/features.h:230:0: note: this is the location of the previous definition > # define _POSIX_C_SOURCE 200809L > ^ >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Block.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer0/Block.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Setting.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/Setting.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVLexicon.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/ov/src/OVLexicon.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Isosurf.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer0/Isosurf.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Deferred.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer0/Deferred.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c ov/src/OVContext.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/ov/src/OVContext.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Tracker.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer0/Tracker.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Seq.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/Seq.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/ScrollBar.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/ScrollBar.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/os_gl.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer0/os_gl.o >In file included from /usr/include/python2.7/Python.h:8:0, > from layer0/os_python.h:28, > from layer1/Setting.h:20, > from layer1/CGO.h:22, > from layer1/ScrollBar.c:23: >/usr/include/python2.7/pyconfig.h:1182:0: warning: "_POSIX_C_SOURCE" redefined [enabled by default] > #define _POSIX_C_SOURCE 200112L > ^ >In file included from /usr/include/malloc.h:22:0, > from layer0/os_predef.h:106, > from layer0/os_gl_pre.h:4, > from layer0/os_gl.h:4, > from layer1/ScrollBar.c:17: >/usr/include/features.h:230:0: note: this is the location of the previous definition > # define _POSIX_C_SOURCE 200809L > ^ >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Map.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer0/Map.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/P.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/P.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/MemoryCache.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer0/MemoryCache.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/FontGLUTHel10.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/FontGLUTHel10.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Field.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer0/Field.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Ray.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/Ray.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/PyMOLObject.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/PyMOLObject.o >layer1/P.c: In function âPUnlockAPIAsGlutâ: >layer1/P.c:1448:5: warning: format â%xâ expects argument of type âunsigned intâ, but argument 3 has type âlong intâ [-Wformat=] > ENDFD; > ^ >layer1/P.c: In function âPUnlockAPIAsGlutNoFlushâ: >layer1/P.c:1462:5: warning: format â%xâ expects argument of type âunsigned intâ, but argument 3 has type âlong intâ [-Wformat=] > ENDFD; > ^ >layer1/P.c: In function âPLockAPIAsGlutâ: >layer1/P.c:1513:5: warning: format â%xâ expects argument of type âunsigned intâ, but argument 3 has type âlong intâ [-Wformat=] > ENDFD; > ^ >layer1/P.c:1525:5: warning: format â%xâ expects argument of type âunsigned intâ, but argument 3 has type âlong intâ [-Wformat=] > ENDFD; > ^ >layer1/P.c:1543:7: warning: format â%xâ expects argument of type âunsigned intâ, but argument 3 has type âlong intâ [-Wformat=] > ENDFD; > ^ >layer1/P.c: In function âPFlushFastâ: >layer1/P.c:2673:7: warning: format â%xâ expects argument of type âunsigned intâ, but argument 4 has type âlong intâ [-Wformat=] > ENDFD; > ^ >layer1/P.c: In function âPAutoBlockâ: >layer1/P.c:2769:9: warning: format â%xâ expects argument of type âunsigned intâ, but argument 3 has type âlong intâ [-Wformat=] > SavedThread[MAX_SAVED_THREAD - 2].id, SavedThread[MAX_SAVED_THREAD - 3].id ENDFD; > ^ >layer1/P.c:2778:5: warning: format â%xâ expects argument of type âunsigned intâ, but argument 3 has type âlong intâ [-Wformat=] > ENDFD; > ^ >layer1/P.c: In function âPUnblockâ: >layer1/P.c:2798:5: warning: format â%xâ expects argument of type âunsigned intâ, but argument 3 has type âlong intâ [-Wformat=] > ENDFD; > ^ >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Match.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer0/Match.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Triangle.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer0/Triangle.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Util.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer0/Util.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Color.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/Color.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/MemoryDebug.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer0/MemoryDebug.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Wizard.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/Wizard.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Tetsurf.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer0/Tetsurf.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Extrude.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/Extrude.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/FontGLUT8x13.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/FontGLUT8x13.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Shaker.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/Shaker.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Err.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer0/Err.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Texture.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer0/Texture.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Pop.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/Pop.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/FontGLUT9x15.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/FontGLUT9x15.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Symmetry.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/Symmetry.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Crystal.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer0/Crystal.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Control.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/Control.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Font.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/Font.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Text.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/Text.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/FontGLUTHel12.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/FontGLUTHel12.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/DistSet.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/DistSet.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Character.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/Character.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Rep.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/Rep.o >In file included from /usr/include/python2.7/Python.h:8:0, > from layer0/os_python.h:28, > from layer1/Setting.h:20, > from layer1/CGO.h:22, > from layer1/Character.c:29: >/usr/include/python2.7/pyconfig.h:1182:0: warning: "_POSIX_C_SOURCE" redefined [enabled by default] > #define _POSIX_C_SOURCE 200112L > ^ >In file included from /usr/include/malloc.h:22:0, > from layer0/os_predef.h:106, > from layer0/os_gl_pre.h:4, > from layer0/os_gl.h:4, > from layer1/Character.c:18: >/usr/include/features.h:230:0: note: this is the location of the previous definition > # define _POSIX_C_SOURCE 200809L > ^ >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/FontGLUT.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/FontGLUT.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectGadgetRamp.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/ObjectGadgetRamp.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Scene.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/Scene.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/CoordSet.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/CoordSet.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Parse.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer0/Parse.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/Debug.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer0/Debug.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/View.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/View.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepNonbondedSphere.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/RepNonbondedSphere.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer0/MyPNG.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer0/MyPNG.o >In file included from /usr/include/python2.7/Python.h:8:0, > from layer0/os_python.h:28, > from layer1/Setting.h:20, > from layer0/MyPNG.c:56: >/usr/include/python2.7/pyconfig.h:1182:0: warning: "_POSIX_C_SOURCE" redefined [enabled by default] > #define _POSIX_C_SOURCE 200112L > ^ >In file included from /usr/include/malloc.h:22:0, > from layer0/os_predef.h:106, > from layer0/MyPNG.c:16: >/usr/include/features.h:230:0: note: this is the location of the previous definition > # define _POSIX_C_SOURCE 200809L > ^ >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepLabel.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/RepLabel.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectGadget.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/ObjectGadget.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepAngle.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/RepAngle.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectVolume.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/ObjectVolume.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepMesh.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/RepMesh.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Basis.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/Basis.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/CGO.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/CGO.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectMolecule.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/ObjectMolecule.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectAlignment.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/ObjectAlignment.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepDistDash.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/RepDistDash.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectSlice.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/ObjectSlice.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/AtomInfo.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/AtomInfo.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectSurface.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/ObjectSurface.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectCallback.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/ObjectCallback.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/PConv.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/PConv.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectMap.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/ObjectMap.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/SculptCache.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/SculptCache.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/VFont.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/VFont.o >In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1804:0, > from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17, > from layer2/ObjectMap.c:42: >/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] > #warning "Using deprecated NumPy API, disable it by " \ > ^ >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/Sculpt.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/Sculpt.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/Ortho.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/Ortho.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectMolecule2.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/ObjectMolecule2.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/GadgetSet.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/GadgetSet.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepCartoon.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/RepCartoon.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepEllipsoid.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/RepEllipsoid.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepDistLabel.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/RepDistLabel.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer3/PlugIOManager.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer3/PlugIOManager.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepRibbon.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/RepRibbon.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer3/Seeker.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer3/Seeker.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer1/FontType.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer1/FontType.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectMesh.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/ObjectMesh.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer4/Export.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer4/Export.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer5/TestPyMOL.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer5/TestPyMOL.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepNonbonded.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/RepNonbonded.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer3/Selector.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer3/Selector.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer5/PyMOL.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer5/PyMOL.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer3/Executive.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer3/Executive.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectDist.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/ObjectDist.o >contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function âread_vaspposcar_timestepâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:232:8: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:237:10: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:246:48: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > for (i = 0; i < data->version - 2; ++i) fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:249:40: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:256:10: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function âread_vaspposcar_structureâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:195:47: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > for (i = 0; i < data->version + 3; ++i) fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:198:39: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > if (tolower(lineptr[0]) == 's') fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:203:9: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c: In function âopen_vaspposcar_readâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:70:8: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:74:32: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > for (i = 0; i < 5; ++i) fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspposcarplugin.c:87:12: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, data->file); > ^ >In file included from layer0/OOMac.h:21:0, > from layer3/Executive.c:24: >layer3/Executive.c: In function âExecutiveSetSymmetryâ: >layer3/Executive.c:5887:19: warning: assignment makes integer from pointer without a cast [enabled by default] > th_assert(1, ok = symmetry); > ^ >layer0/Err.h:32:31: note: in definition of macro âth_assertâ > #define th_assert(x, c) {if(!(c)) th_raise(x);} > ^ >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.o >In file included from contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:38:0: >contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function âeatlineâ: >contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:835:10: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(readbuf, 1024, fd); > ^ >contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c: In function âopen_molden_readâ: >contrib/uiuc/plugins/molfile_plugin/src/moldenplugin.c:213:17: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result [-Wunused-result] > fscanf(data->file, "%d", &natm); > ^ >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/tinkerplugin.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.o >contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function âread_vaspchgcar_dataâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:238:65: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:283:12: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function âread_vaspchgcar_metadataâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:151:8: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c: In function âopen_vaspchgcar_readâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:72:8: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:76:8: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:82:10: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:93:8: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:104:12: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspchgcarplugin.c:132:49: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); > ^ >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pqrplugin.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/ObjectGroup.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/ObjectGroup.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/jsplugin.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/jsplugin.o >contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function âread_vaspoutcar_timestepâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:240:12: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:243:7: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function âread_vaspoutcar_structureâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:205:14: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c: In function âopen_vaspoutcar_readâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspoutcarplugin.c:88:8: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, data->file); > ^ >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/carplugin.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/carplugin.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepDihedral.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/RepDihedral.o >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function âread_car_timestepâ: >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:326:10: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:339:10: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:344:10: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:349:8: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:363:12: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:373:10: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function âread_car_structureâ: >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:266:10: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:268:10: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:272:8: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:295:12: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:305:10: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c: In function âopen_car_readâ: >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:169:8: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, fd); > ^ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:179:8: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, fd); > ^ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:182:10: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, fd); > ^ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:210:8: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, fd); > ^ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:213:8: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, fd); > ^ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:224:10: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, fd); > ^ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:226:10: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, fd); > ^ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:230:8: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, fd); > ^ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:234:12: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, fd); > ^ >contrib/uiuc/plugins/molfile_plugin/src/carplugin.c:245:10: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, fd); > ^ >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/corplugin.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/corplugin.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/basissetplugin.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepDot.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/RepDot.o >contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function âread_vaspxdatcar_timestepâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:284:8: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function âread_vaspxdatcar_structureâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:229:32: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > for (i = 0; i < 4; ++i) fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:234:10: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:238:37: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > for (i = 0; i < 2; ++i) fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:253:49: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > for (i = 0; i < 10 - data->version; ++i) fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c: In function âopen_vaspxdatcar_readâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:90:8: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, poscar); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:93:8: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, poscar); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:98:10: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, poscar); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:112:8: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, poscar); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspxdatcarplugin.c:122:12: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, poscar); > ^ >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.o >contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c: In function âvtf_parse_atomâ: >contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:234:7: warning: format â%sâ expects argument of type âchar *â, but argument 3 has type âchar (*)[16]â [-Wformat=] > if (sscanf(s, "%16s %n", &atom.name, &n) < 1) { > ^ >contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:243:7: warning: format â%sâ expects argument of type âchar *â, but argument 3 has type âchar (*)[16]â [-Wformat=] > if (sscanf(s, "%16s %n", &atom.type, &n) < 1) { > ^ >In file included from contrib/uiuc/plugins/molfile_plugin/src/gamessplugin.c:160:0: >contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h: In function âeatlineâ: >contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:269:2: warning: format â%sâ expects argument of type âchar *â, but argument 3 has type âchar (*)[8]â [-Wformat=] > if (sscanf(s, "%8s %n", &atom.resname, &n) < 1) { > ^ >contrib/uiuc/plugins/molfile_plugin/src/qmplugin.h:835:10: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(readbuf, 1024, fd); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:284:7: warning: format â%sâ expects argument of type âchar *â, but argument 3 has type âchar (*)[8]â [-Wformat=] > if (sscanf(s, "%8s %n", &atom.segid, &n) < 1) { > ^ >contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:293:7: warning: format â%sâ expects argument of type âchar *â, but argument 3 has type âchar (*)[2]â [-Wformat=] > if (sscanf(s, "%2s %n", &atom.insertion, &n) < 1) { > ^ >contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:305:2: warning: format â%sâ expects argument of type âchar *â, but argument 3 has type âchar (*)[2]â [-Wformat=] > if (sscanf(s, "%2s %n", &atom.chain, &n) < 1) { > ^ >contrib/uiuc/plugins/molfile_plugin/src/vtfplugin.c:339:2: warning: format â%sâ expects argument of type âchar *â, but argument 3 has type âchar (*)[2]â [-Wformat=] > if (sscanf(s, "%2s %n", &atom.altloc, &n) < 1) { > ^ >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepSurface.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/RepSurface.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xyzplugin.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/binposplugin.o >contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c: In function âopen_binpos_readâ: >contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:64:8: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > fread(magicchar,sizeof(char),4,fd); > ^ >contrib/uiuc/plugins/molfile_plugin/src/binposplugin.c:72:8: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > fread(&igarb,sizeof(int),1,fd); > ^ >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dcdplugin.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/crdplugin.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/crdplugin.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/PlugIOManagerInit.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pdbplugin.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.o >contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c: In function âopen_rst_readâ: >contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:57:8: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(title, 82, fd); > ^ >contrib/uiuc/plugins/molfile_plugin/src/rst7plugin.c:60:8: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, 82, fd); > ^ >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer5/main.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer5/main.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.o >contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function âread_vaspparchg_dataâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:239:65: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > for (n = 0; n < data->numatoms + data->version + 5; ++n) fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function âread_vaspparchg_metadataâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:151:8: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c: In function âopen_vaspparchg_readâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:72:8: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:76:8: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:82:10: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:93:8: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:104:12: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspparchgplugin.c:132:49: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > for (i = 0; i < data->numatoms + 2; ++i) fgets(lineptr, LINESIZE, data->file); > ^ >x86_64-pc-linux-gnu-g++ -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/raster3dplugin.o >x86_64-pc-linux-gnu-g++ -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/msmsplugin.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepSphere.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/RepSphere.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.o >contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c: In function âopen_namdbin_readâ: >contrib/uiuc/plugins/molfile_plugin/src/namdbinplugin.c:70:8: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > fread(&filen, sizeof(namdbin_int32), 1, fd); > ^ >x86_64-pc-linux-gnu-g++ -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/grdplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/grdplugin.o >x86_64-pc-linux-gnu-g++ -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/biomoccaplugin.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.o >contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c: In function âread_dlpoly_timestepâ: >contrib/uiuc/plugins/molfile_plugin/src/dlpolyplugin.c:420:8: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(fbuffer, 1024, data->file); > ^ >x86_64-pc-linux-gnu-g++ -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c modules/cealign/src/ccealignmodule.cpp -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/modules/cealign/src/ccealignmodule.o >x86_64-pc-linux-gnu-g++ -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/stlplugin.o >x86_64-pc-linux-gnu-g++ -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pltplugin.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/hash.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/hash.o >contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp: In function âint read_rawgraphics(void*, int*, const molfile_graphics_t**)â: >contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:96:28: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, 80, infile); > ^ >contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:104:28: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, 80, infile); > ^ >contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp: In function âvoid* open_plt_read(const char*, const char*, int*)â: >contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:69:39: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(intHeader, sizeof(int), 5, fd); > ^ >contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:119:30: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, 80, infile); > ^ >contrib/uiuc/plugins/molfile_plugin/src/pltplugin.cpp:82:43: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(floatHeader, sizeof(float), 6, fd); > ^ >contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:131:32: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, 80, infile); > ^ >contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:153:30: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, 80, infile); > ^ >contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:162:30: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, 80, infile); > ^ >contrib/uiuc/plugins/molfile_plugin/src/stlplugin.cpp:171:30: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, 80, infile); > ^ >x86_64-pc-linux-gnu-g++ -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/gridplugin.o >x86_64-pc-linux-gnu-g++ -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.o >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.o >contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp: In function âvoid* open_grid_read(const char*, const char*, int*)â: >contrib/uiuc/plugins/molfile_plugin/src/gridplugin.cpp:84:40: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(&dataBegin, sizeof(int), 1, fd); > ^ >contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function âint read_bgf_timestep(void*, int, molfile_timestep_t*)â: >contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:243:37: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, bgf->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:252:37: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, bgf->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function âint read_bgf_bonds_aux(void*, int*, int**, int**, float**)â: >contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:328:37: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, bgf->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:346:35: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, bgf->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:355:41: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fgets(nextline, LINESIZE, bgf->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:419:41: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, bgf->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function âint read_bgf_structure(void*, int*, molfile_atom_t*)â: >contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:194:37: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, bgf->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:203:37: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, bgf->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp: In function âvoid* open_bgf_read(const char*, const char*, int*)â: >contrib/uiuc/plugins/molfile_plugin/src/bgfplugin.cpp:59:30: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, fd); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function âread_vaspxml_structureâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:140:12: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:145:14: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c: In function âopen_vaspxml_readâ: >contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:87:13: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, data->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/vaspxmlplugin.c:93:13: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lineptr, LINESIZE, data->file); > ^ >x86_64-pc-linux-gnu-g++ -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/edmplugin.o >contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function âint read_edm_data(void*, int, float*, float*)â: >contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:270:30: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fgets(readbuf, 13, edm->fd); > ^ >contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp: In function âvoid eatline(FILE*)â: >contrib/uiuc/plugins/molfile_plugin/src/edmplugin.cpp:44:27: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fgets(readbuf, 1024, fd); // go on to next line > ^ >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/psfplugin.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/psfplugin.o >x86_64-pc-linux-gnu-g++ -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.o >x86_64-pc-linux-gnu-g++ -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.o >contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function âint read_xbgf_timestep(void*, int, molfile_timestep_t*)â: >contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:288:37: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, bgf->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:297:37: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, bgf->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function âint read_xbgf_bonds_aux(void*, int*, int**, int**, float**)â: >contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:365:37: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, bgf->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:387:35: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, bgf->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:395:41: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fgets(nextline, LINESIZE, bgf->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:455:41: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, bgf->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function âint read_xbgf_structure(void*, int*, molfile_atom_t*)â: >contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:241:37: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, bgf->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:250:37: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, bgf->file); > ^ >contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp: In function âvoid* open_xbgf_read(const char*, const char*, int*)â: >contrib/uiuc/plugins/molfile_plugin/src/xbgfplugin.cpp:72:30: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fgets(line, LINESIZE, fd); > ^ >contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp: In function âvoid* open_fs4_read(const char*, const char*, int*)â: >contrib/uiuc/plugins/molfile_plugin/src/fs4plugin.cpp:79:40: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(&dataBegin, sizeof(int), 1, fd); > ^ >x86_64-pc-linux-gnu-g++ -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/graspplugin.o >x86_64-pc-linux-gnu-g++ -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.o >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function âvoid line3(FILE*, GRASSP*)â: >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:186:30: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(line3, 1, 80, infile); > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp: In function âint read_rawgraphics(void*, int*, const molfile_graphics_t**)â: >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:284:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > TRASH; > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:285:29: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(line, 1, 80, infile); > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:291:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > TRASH; > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:305:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > TRASH; > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:306:29: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(line, 1, 80, infile); > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:307:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > TRASH; > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:311:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > TRASH; > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:313:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > TRASH; > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:318:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > TRASH; > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:319:29: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(line, 1, 80, infile); > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:320:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > TRASH; > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:328:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > TRASH; > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:329:29: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(line, 1, 80, infile); > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:330:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > TRASH; > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:354:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > TRASH; > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:355:50: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(vertex, 3 * sizeof(float), nvert, infile); > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:356:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > TRASH; > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:357:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > TRASH; > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:358:50: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(access, 3 * sizeof(float), nvert, infile); > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:359:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > TRASH; > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:360:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > TRASH; > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:361:50: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(normal, 3 * sizeof(float), nvert, infile); > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:362:8: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > TRASH; > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:371:10: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > TRASH; > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:372:57: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(triangle, 3 * sizeof(int), ntriangles, infile); > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:373:10: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > TRASH; > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:374:10: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > TRASH; > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:375:56: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(properties, 3 * sizeof(float), nvert, infile); > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:394:10: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > TRASH; > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:395:60: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(striangle, sizeof(short), 3 * ntriangles, infile); > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:396:10: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > TRASH; > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:397:10: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > TRASH; > ^ >contrib/uiuc/plugins/molfile_plugin/src/graspplugin.cpp:398:56: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(properties, sizeof(float), 3 * nvert, infile); > ^ >x86_64-pc-linux-gnu-g++ -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.o >contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp: In function âvoid* open_uhbd_read(const char*, const char*, int*)â: >contrib/uiuc/plugins/molfile_plugin/src/uhbdplugin.cpp:102:41: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(&headersize, sizeof(int), 1, fd); > ^ >contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp: In function âint read_pbeq_data(void*, int, float*, float*)â: >contrib/uiuc/plugins/molfile_plugin/src/pbeqplugin.cpp:262:55: warning: format â%dâ expects argument of type âintâ, but argument 2 has type âlong intâ [-Wformat=] > printf("pbeqplugin) offset: %d\n", ftell(fd)); > ^ >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c layer2/RepWireBond.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/layer2/RepWireBond.o >x86_64-pc-linux-gnu-g++ -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.o >x86_64-pc-linux-gnu-g++ -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.o >x86_64-pc-linux-gnu-g++ -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/avsplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/avsplugin.o >contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function âint read_dsn6_data(void*, int, float*, float*)â: >contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:233:44: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(brick, sizeof(char), 512, fd); > ^ >contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp: In function âvoid* open_dsn6_read(const char*, const char*, int*)â: >contrib/uiuc/plugins/molfile_plugin/src/dsn6plugin.cpp:91:43: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(fileHeader, sizeof(short), 19, fd); > ^ >x86_64-pc-linux-gnu-g++ -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/situsplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/situsplugin.o >x86_64-pc-linux-gnu-g++ -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/mapplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/mapplugin.o >x86_64-pc-linux-gnu-g++ -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.o >x86_64-pc-linux-gnu-g++ -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/brixplugin.o >contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp: In function âint {anonymous}::write_timestep(void*, const molfile_timestep_t*)â: >contrib/uiuc/plugins/molfile_plugin/src/maeffplugin.cpp:1986:31: error: format not a string literal and no format arguments [-Werror=format-security] > fprintf(stderr, e.what()); > ^ >contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function âint read_brix_data(void*, int, float*, float*)â: >contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:247:44: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fread(brick, sizeof(char), 512, fd); > ^ >contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp: In function âvoid* open_brix_read(const char*, const char*, int*)â: >contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:79:29: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result [-Wunused-result] > fscanf(fd, "%3s", keyWord); > ^ >contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:86:62: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result [-Wunused-result] > fscanf(fd, " %s %d %d %d", keyWord, &org_x, &org_y, &org_z); > ^ >contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:93:62: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result [-Wunused-result] > fscanf(fd, " %s %d %d %d", keyWord, &ext_x, &ext_y, &ext_z); > ^ >contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:100:65: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result [-Wunused-result] > fscanf(fd, " %s %f %f %f", keyWord, &grid_x, &grid_y, &grid_z); > ^ >contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:110:74: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result [-Wunused-result] > &cell_x, &cell_y, &cell_z, &cell_alpha, &cell_beta, &cell_gamma); > ^ >contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:123:39: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result [-Wunused-result] > fscanf(fd, " %s %f", keyWord, &prod); > ^ >contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:128:39: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result [-Wunused-result] > fscanf(fd, " %s %f", keyWord, &plus); > ^ >contrib/uiuc/plugins/molfile_plugin/src/brixplugin.cpp:135:40: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result [-Wunused-result] > fscanf(fd, " %s %f", keyWord, &sigma); > ^ >x86_64-pc-linux-gnu-gcc -march=native -Wformat -Werror=format-security -g0 -O2 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c build/generated/ShaderText.c -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/build/generated/ShaderText.o >x86_64-pc-linux-gnu-g++ -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.o >contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function âvoid* open_cube_read(const char*, const char*, int*)â: >contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:181:32: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fgets(readbuf, 256, cube->fd); // go on to next line > ^ >contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:351:41: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result [-Wunused-result] > fscanf(cube->fd, "%d", &cube->nsets); > ^ >contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:356:35: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result [-Wunused-result] > fscanf(cube->fd, "%d", &orb); > ^ >contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp: In function âvoid eatline(FILE*)â: >contrib/uiuc/plugins/molfile_plugin/src/cubeplugin.cpp:141:27: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result [-Wunused-result] > fgets(readbuf, 1024, fd); // go on to next line > ^ >x86_64-pc-linux-gnu-g++ -march=native -Wformat -Werror=format-security -g0 -O2 -Wabi -fabi-version=6 -fPIC -D_PYMOL_VMD_PLUGINS -D_PYMOL_LIBPNG -D_PYMOL_FREETYPE -D_PYMOL_INLINE -D_PYMOL_OPENGL_SHADERS -DNO_MMLIBS -D_PYMOL_CGO_DRAWARRAYS -D_PYMOL_CGO_DRAWBUFFERS -D_CGO_DRAWARRAYS -D_PYMOL_GL_CALLLISTS -DOPENGL_ES_2 -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -Imodules/cealign/src -Imodules/cealign/src/tnt -Ibuild/generated -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include/freetype2 -I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c contrib/uiuc/plugins/molfile_plugin/src/phiplugin.cpp -o /var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol-python2_7/temp.linux-x86_64-2.7/contrib/uiuc/plugins/molfile_plugin/src/phiplugin.o >cc1plus: some warnings being treated as errors >error: command 'x86_64-pc-linux-gnu-g++' failed with exit status 1 > * ERROR: sci-chemistry/pymol-1.7.0.1::gentoo failed (compile phase): > * (no error message) > * > * Call stack: >contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp: In member function âbool desres::molfile::Timekeys::init(const string&)â: >contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:488:48: warning: format â%dâ expects argument of type âintâ, but argument 2 has type âuint64_t {aka long unsigned int}â [-Wformat=] > keys[i].size(), m_framesize); > ^ >contrib/uiuc/plugins/molfile_plugin/src/dtrplugin.cpp:488:48: warning: format â%dâ expects argument of type âintâ, but argument 3 has type âuint64_t {aka long unsigned int}â [-Wformat=] > * ebuild.sh, line 93: Called src_compile > * environment, line 3856: Called distutils-r1_src_compile > * environment, line 1090: Called _distutils-r1_run_foreach_impl 'distutils-r1_python_compile' > * environment, line 328: Called python_foreach_impl 'distutils-r1_run_phase' 'distutils-r1_python_compile' > * environment, line 3379: Called multibuild_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile' > * environment, line 2495: Called _multibuild_run '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile' > * environment, line 2493: Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'distutils-r1_python_compile' > * environment, line 769: Called distutils-r1_run_phase 'distutils-r1_python_compile' > * environment, line 1081: Called distutils-r1_python_compile > * environment, line 966: Called esetup.py 'build' > * environment, line 1564: Called die > * The specific snippet of code: > * "${@}" || die > * > * If you need support, post the output of `emerge --info '=sci-chemistry/pymol-1.7.0.1::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-chemistry/pymol-1.7.0.1::gentoo'`. > * The complete build log is located at '/var/log/log/build/sci-chemistry/pymol-1.7.0.1:20150312-092316.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-chemistry/pymol-1.7.0.1/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/pymol-1.7.0.1/temp/environment'. > * Working directory: '/var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol' > * S: '/var/tmp/portage/sci-chemistry/pymol-1.7.0.1/work/pymol-1.7.0.1/pymol'
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