>>> Messages generated by process 24460 on 2014-08-10 23:38:56 EDT for package dev-db/mysql-5.1.70: LOG: postrm Directory symlink(s) may need protection: /var/run Searching all installed packages for files installed via above symlink(s)... The above directory symlink(s) are all safe to remove. Removing them now... >>> Messages generated by process 24460 on 2014-08-10 23:38:56 EDT for package dev-db/mysql-5.5.39: LOG: unpack MySQL MY_DATADIR is /var/lib/mysql MySQL datadir found in /var/lib/mysql A new one will not be created. LOG: postinst You might want to run: "emerge --config =dev-db/mysql-5.5.39" if this is a new install. If you are upgrading major versions, you should run the mysql_upgrade tool.