build.log with failure

build.log (text/plain), 13.51 KB, created by Thomas Kahle (RETIRED) on 2014-04-22 14:29:11 UTC

[32;01m * [39;49;00mPackage:    dev-python/rpy-2.3.9
[32;01m * [39;49;00mRepository: gentoo
[32;01m * [39;49;00mMaintainer: [e-mail] [e-mail]
[32;01m * [39;49;00mUSE:        amd64 elibc_glibc kernel_linux python_targets_python2_7 python_targets_python3_3 userland_GNU
[32;01m * [39;49;00mFEATURES:   preserve-libs sandbox userpriv usersandbox
>>> Unpacking source...
>>> Unpacking rpy2-2.3.9.tar.gz to /var/tmp/portage/dev-python/rpy-2.3.9/work
>>> Source unpacked in /var/tmp/portage/dev-python/rpy-2.3.9/work
>>> Preparing source in /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9 ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9 ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9 ...
 [32;01m*[0m python3_3: running distutils-r1_run_phase distutils-r1_python_compile
/usr/bin/python3.3 setup.py build
warning: no previously-included files matching '*patch*' found anywhere in distribution
warning: no previously-included files matching '*diff*' found anywhere in distribution
warning: no previously-included files matching '.hg' found anywhere in distribution
no previously-included directories found matching 'dist'
Using 2to3 to translate Python2-only idioms into Python3 code. Please wait...
done.
running build
running build_py
creating /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib
creating /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2
copying build/python3_rpy/rpy/tests.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2
copying build/python3_rpy/rpy/tests_rpy_classic.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2
copying build/python3_rpy/rpy/__init__.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2
copying build/python3_rpy/rpy/rpy_classic.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2
creating /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/rlike
copying build/python3_rpy/rpy/rlike/container.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/rlike
copying build/python3_rpy/rpy/rlike/functional.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/rlike
copying build/python3_rpy/rpy/rlike/__init__.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/rlike
copying build/python3_rpy/rpy/rlike/indexing.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/rlike
creating /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/rlike/tests
copying build/python3_rpy/rpy/rlike/tests/test_container.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/rlike/tests
copying build/python3_rpy/rpy/rlike/tests/__init__.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/rlike/tests
copying build/python3_rpy/rpy/rlike/tests/test_functional.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/rlike/tests
copying build/python3_rpy/rpy/rlike/tests/test_indexing.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/rlike/tests
creating /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/rinterface
copying build/python3_rpy/rpy/rinterface/__init__.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/rinterface
creating /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/rinterface/tests
copying build/python3_rpy/rpy/rinterface/tests/test_SexpEnvironment.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/rinterface/tests
copying build/python3_rpy/rpy/rinterface/tests/test_Sexp.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/rinterface/tests
copying build/python3_rpy/rpy/rinterface/tests/test_Device.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/rinterface/tests
copying build/python3_rpy/rpy/rinterface/tests/test_SexpClosure.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/rinterface/tests
copying build/python3_rpy/rpy/rinterface/tests/test_SexpVectorNumeric.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/rinterface/tests
copying build/python3_rpy/rpy/rinterface/tests/__init__.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/rinterface/tests
copying build/python3_rpy/rpy/rinterface/tests/test_SexpVector.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/rinterface/tests
copying build/python3_rpy/rpy/rinterface/tests/test_EmbeddedR.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/rinterface/tests
copying build/python3_rpy/rpy/rinterface/tests/test_SexpExtPtr.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/rinterface/tests
creating /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects
copying build/python3_rpy/rpy/robjects/conversion.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects
copying build/python3_rpy/rpy/robjects/packages.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects
copying build/python3_rpy/rpy/robjects/numpy2ri.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects
copying build/python3_rpy/rpy/robjects/help.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects
copying build/python3_rpy/rpy/robjects/constants.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects
copying build/python3_rpy/rpy/robjects/vectors.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects
copying build/python3_rpy/rpy/robjects/functions.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects
copying build/python3_rpy/rpy/robjects/language.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects
copying build/python3_rpy/rpy/robjects/__init__.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects
copying build/python3_rpy/rpy/robjects/robject.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects
copying build/python3_rpy/rpy/robjects/environments.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects
copying build/python3_rpy/rpy/robjects/methods.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects
copying build/python3_rpy/rpy/robjects/pandas2ri.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects
creating /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects/tests
copying build/python3_rpy/rpy/robjects/tests/testVector.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects/tests
copying build/python3_rpy/rpy/robjects/tests/testRObject.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects/tests
copying build/python3_rpy/rpy/robjects/tests/testPandasConversions.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects/tests
copying build/python3_rpy/rpy/robjects/tests/testArray.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects/tests
copying build/python3_rpy/rpy/robjects/tests/testRobjects.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects/tests
copying build/python3_rpy/rpy/robjects/tests/testNumpyConversions.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects/tests
copying build/python3_rpy/rpy/robjects/tests/testFormula.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects/tests
copying build/python3_rpy/rpy/robjects/tests/testDataFrame.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects/tests
copying build/python3_rpy/rpy/robjects/tests/testMethods.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects/tests
copying build/python3_rpy/rpy/robjects/tests/__init__.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects/tests
copying build/python3_rpy/rpy/robjects/tests/testLanguage.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects/tests
copying build/python3_rpy/rpy/robjects/tests/testPackages.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects/tests
copying build/python3_rpy/rpy/robjects/tests/testHelp.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects/tests
copying build/python3_rpy/rpy/robjects/tests/testFunction.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects/tests
copying build/python3_rpy/rpy/robjects/tests/testEnvironment.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects/tests
creating /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects/lib
copying build/python3_rpy/rpy/robjects/lib/__init__.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects/lib
copying build/python3_rpy/rpy/robjects/lib/ggplot2.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects/lib
copying build/python3_rpy/rpy/robjects/lib/grid.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects/lib
creating /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects/lib/tests
copying build/python3_rpy/rpy/robjects/lib/tests/test_ggplot2.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects/lib/tests
copying build/python3_rpy/rpy/robjects/lib/tests/__init__.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/robjects/lib/tests
creating /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/interactive
copying build/python3_rpy/rpy/interactive/packages.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/interactive
copying build/python3_rpy/rpy/interactive/process_revents.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/interactive
copying build/python3_rpy/rpy/interactive/__init__.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/interactive
copying build/python3_rpy/rpy/interactive/ipython.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/interactive
creating /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/interactive/tests
copying build/python3_rpy/rpy/interactive/tests/__init__.py -> /var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9-python3_3/lib/rpy2/interactive/tests
warning: build_py: byte-compiling is disabled, skipping.

running build_ext
"/usr/lib64/R/bin/R" CMD config --ldflags
Invalid substring
-fopenmp
in string
-Wl,--export-dynamic -fopenmp -Wl,-O1 -Wl,--as-needed -L/usr/lib64/R/lib -lR -lpcre -llzma -lbz2 -lz -lrt -ldl -lm
Problem while running `"/usr/lib64/R/bin/R" CMD config --ldflags`

 [31;01m*[0m ERROR: dev-python/rpy-2.3.9::gentoo failed (compile phase):
 [31;01m*[0m   (no error message)
 [31;01m*[0m 
 [31;01m*[0m Call stack:
 [31;01m*[0m     ebuild.sh, line   93:  Called src_compile
 [31;01m*[0m   environment, line 3353:  Called distutils-r1_src_compile
 [31;01m*[0m   environment, line 1054:  Called _distutils-r1_run_foreach_impl 'distutils-r1_python_compile'
 [31;01m*[0m   environment, line  263:  Called python_parallel_foreach_impl 'distutils-r1_run_phase' 'distutils-r1_python_compile'
 [31;01m*[0m   environment, line 3212:  Called multibuild_parallel_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile'
 [31;01m*[0m   environment, line 2374:  Called multibuild_foreach_variant '_multibuild_parallel' '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile'
 [31;01m*[0m   environment, line 2317:  Called _multibuild_run '_multibuild_parallel' '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile'
 [31;01m*[0m   environment, line 2315:  Called _multibuild_parallel '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'distutils-r1_python_compile'
 [31;01m*[0m   environment, line 2365:  Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'distutils-r1_python_compile'
 [31;01m*[0m   environment, line  675:  Called distutils-r1_run_phase 'distutils-r1_python_compile'
 [31;01m*[0m   environment, line 1043:  Called distutils-r1_python_compile
 [31;01m*[0m   environment, line  926:  Called esetup.py 'build'
 [31;01m*[0m   environment, line 1493:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m       "${@}" || die
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the output of `emerge --info '=dev-python/rpy-2.3.9::gentoo'`,
 [31;01m*[0m the complete build log and the output of `emerge -pqv '=dev-python/rpy-2.3.9::gentoo'`.
 [31;01m*[0m The complete build log is located at '/var/tmp/portage/dev-python/rpy-2.3.9/temp/build.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/dev-python/rpy-2.3.9/temp/environment'.
 [31;01m*[0m Working directory: '/var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9'
 [31;01m*[0m S: '/var/tmp/portage/dev-python/rpy-2.3.9/work/rpy2-2.3.9'