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Gentoo's Bugzilla – Attachment 371392 Details for
Bug 502406
sci-libs/scipy-0.12.1 with sci-libs/mkl - libraries mkl_gf_lp64kl_sequentialkl_core,mkl_gf_lp64kl_sequentialkl_core not found in ['/opt/intel/mkl/10.0.5.025/lib/em64t', '/usr/lib64']
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build.log
build.log (text/plain), 13.25 KB, created by
HMolina
on 2014-02-27 12:17:37 UTC
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Description:
build.log
Filename:
MIME Type:
Creator:
HMolina
Created:
2014-02-27 12:17:37 UTC
Size:
13.25 KB
patch
obsolete
>[32;01m * [39;49;00mPackage: sci-libs/scipy-0.12.1 >[32;01m * [39;49;00mRepository: gentoo >[32;01m * [39;49;00mMaintainer: sci@gentoo.org >[32;01m * [39;49;00mUSE: amd64 elibc_glibc kernel_linux python_targets_python2_7 python_targets_python3_3 userland_GNU >[32;01m * [39;49;00mFEATURES: preserve-libs sandbox userpriv usersandbox > [32;01m*[0m Using following Fortran compiler: > [32;01m*[0m F77: x86_64-pc-linux-gnu-gfortran > [32;01m*[0m FC: x86_64-pc-linux-gnu-gfortran >>>> Unpacking source... >>>> Unpacking scipy-0.12.1.tar.gz to /var/tmp/portage/sci-libs/scipy-0.12.1/work >>>> Source unpacked in /var/tmp/portage/sci-libs/scipy-0.12.1/work >>>> Preparing source in /var/tmp/portage/sci-libs/scipy-0.12.1/work/scipy-0.12.1 ... > [32;01m*[0m Applying scipy-0.12.0-gerqf.patch ... >[A[204C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying scipy-0.12.0-blitz.patch ... >[A[204C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying scipy-0.12.0-restore-sys-argv.patch ... >[A[204C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying scipy-0.12.0-cephes-missing-include.patch ... >[A[204C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Will copy sources from /var/tmp/portage/sci-libs/scipy-0.12.1/work/scipy-0.12.1 > [32;01m*[0m python3_3: copying to /var/tmp/portage/sci-libs/scipy-0.12.1/work/scipy-0.12.1-python3_3 > [32;01m*[0m python2_7: copying to /var/tmp/portage/sci-libs/scipy-0.12.1/work/scipy-0.12.1-python2_7 >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-libs/scipy-0.12.1/work/scipy-0.12.1 ... >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-libs/scipy-0.12.1/work/scipy-0.12.1 ... > [32;01m*[0m python3_3: running distutils-r1_run_phase python_compile > [32;01m*[0m python2_7: running distutils-r1_run_phase python_compile >/usr/bin/python2.7 setup.py build config_fc --noopt --noarch >/usr/bin/python3.3 setup.py build config_fc --noopt --noarch >Running from scipy source directory. >blas_opt_info: >system_info: > NOT AVAILABLE > >/usr/lib64/python2.7/site-packages/numpy/distutils/system_info.py:1512: UserWarning: > Atlas (http://math-atlas.sourceforge.net/) libraries not found. > Directories to search for the libraries can be specified in the > numpy/distutils/site.cfg file (section [atlas]) or by setting > the ATLAS environment variable. > warnings.warn(AtlasNotFoundError.__doc__) >blas_info: > libraries mkl_gf_lp64kl_sequentialkl_core,mkl_gf_lp64kl_sequentialkl_core not found in ['/opt/intel/mkl/10.0.5.025/lib/em64t', '/usr/lib64'] > NOT AVAILABLE > >/usr/lib64/python2.7/site-packages/numpy/distutils/system_info.py:1521: UserWarning: > Blas (http://www.netlib.org/blas/) libraries not found. > Directories to search for the libraries can be specified in the > numpy/distutils/site.cfg file (section [blas]) or by setting > the BLAS environment variable. > warnings.warn(BlasNotFoundError.__doc__) >blas_src_info: > NOT AVAILABLE > >/usr/lib64/python2.7/site-packages/numpy/distutils/system_info.py:1524: UserWarning: > Blas (http://www.netlib.org/blas/) sources not found. > Directories to search for the sources can be specified in the > numpy/distutils/site.cfg file (section [blas_src]) or by setting > the BLAS_SRC environment variable. > warnings.warn(BlasSrcNotFoundError.__doc__) >Traceback (most recent call last): > File "setup.py", line 165, in <module> > setup_package() > File "setup.py", line 161, in setup_package > configuration=configuration) > File "/usr/lib64/python2.7/site-packages/numpy/distutils/core.py", line 135, in setup > config = configuration() > File "setup.py", line 136, in configuration > config.add_subpackage('scipy') > File "/usr/lib64/python2.7/site-packages/numpy/distutils/misc_util.py", line 966, in add_subpackage > caller_level = 2) > File "/usr/lib64/python2.7/site-packages/numpy/distutils/misc_util.py", line 935, in get_subpackage > caller_level = caller_level + 1) > File "/usr/lib64/python2.7/site-packages/numpy/distutils/misc_util.py", line 872, in _get_configuration_from_setup_py > config = setup_module.configuration(*args) > File "scipy/setup.py", line 9, in configuration > config.add_subpackage('integrate') > File "/usr/lib64/python2.7/site-packages/numpy/distutils/misc_util.py", line 966, in add_subpackage > caller_level = 2) > File "/usr/lib64/python2.7/site-packages/numpy/distutils/misc_util.py", line 935, in get_subpackage > caller_level = caller_level + 1) > File "/usr/lib64/python2.7/site-packages/numpy/distutils/misc_util.py", line 872, in _get_configuration_from_setup_py > config = setup_module.configuration(*args) > File "scipy/integrate/setup.py", line 11, in configuration > blas_opt = get_info('blas_opt',notfound_action=2) > File "/usr/lib64/python2.7/site-packages/numpy/distutils/system_info.py", line 340, in get_info > return cl().get_info(notfound_action) > File "/usr/lib64/python2.7/site-packages/numpy/distutils/system_info.py", line 499, in get_info > raise self.notfounderror(self.notfounderror.__doc__) >numpy.distutils.system_info.BlasNotFoundError: > Blas (http://www.netlib.org/blas/) libraries not found. > Directories to search for the libraries can be specified in the > numpy/distutils/site.cfg file (section [blas]) or by setting > the BLAS environment variable. > [31;01m*[0m ERROR: sci-libs/scipy-0.12.1::gentoo failed (compile phase): > [31;01m*[0m (no error message) > [31;01m*[0m > [31;01m*[0m Call stack: > [31;01m*[0m ebuild.sh, line 93: Called src_compile > [31;01m*[0m environment, line 3956: Called distutils-r1_src_compile > [31;01m*[0m environment, line 1427: Called _distutils-r1_run_foreach_impl 'python_compile' > [31;01m*[0m environment, line 281: Called python_parallel_foreach_impl 'distutils-r1_run_phase' 'python_compile' >blas_opt_info: >system_info: > NOT AVAILABLE > > [31;01m*[0m environment, line 3690: Called multibuild_parallel_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile' >blas_info: > libraries mkl_gf_lp64kl_sequentialkl_core,mkl_gf_lp64kl_sequentialkl_core not found in ['/opt/intel/mkl/10.0.5.025/lib/em64t', '/usr/lib64'] > NOT AVAILABLE > >blas_src_info: > NOT AVAILABLE > >Running from scipy source directory. >/usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py:1512: UserWarning: > Atlas (http://math-atlas.sourceforge.net/) libraries not found. > Directories to search for the libraries can be specified in the > numpy/distutils/site.cfg file (section [atlas]) or by setting > the ATLAS environment variable. > warnings.warn(AtlasNotFoundError.__doc__) >/usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py:1521: UserWarning: > Blas (http://www.netlib.org/blas/) libraries not found. > Directories to search for the libraries can be specified in the > numpy/distutils/site.cfg file (section [blas]) or by setting > the BLAS environment variable. > warnings.warn(BlasNotFoundError.__doc__) >/usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py:1524: UserWarning: > Blas (http://www.netlib.org/blas/) sources not found. > Directories to search for the sources can be specified in the > numpy/distutils/site.cfg file (section [blas_src]) or by setting > the BLAS_SRC environment variable. > warnings.warn(BlasSrcNotFoundError.__doc__) >Traceback (most recent call last): > File "setup.py", line 165, in <module> > setup_package() > File "setup.py", line 161, in setup_package > configuration=configuration) > File "/usr/lib64/python3.3/site-packages/numpy/distutils/core.py", line 135, in setup > config = configuration() > File "setup.py", line 136, in configuration > config.add_subpackage('scipy') > File "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line 966, in add_subpackage > caller_level = 2) > File "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line 935, in get_subpackage > caller_level = caller_level + 1) > File "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line 872, in _get_configuration_from_setup_py > config = setup_module.configuration(*args) > File "scipy/setup.py", line 9, in configuration > config.add_subpackage('integrate') > File "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line 966, in add_subpackage > caller_level = 2) > File "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line 935, in get_subpackage > caller_level = caller_level + 1) > File "/usr/lib64/python3.3/site-packages/numpy/distutils/misc_util.py", line 872, in _get_configuration_from_setup_py > config = setup_module.configuration(*args) > File "scipy/integrate/setup.py", line 11, in configuration > blas_opt = get_info('blas_opt',notfound_action=2) > File "/usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py", line 340, in get_info > return cl().get_info(notfound_action) > File "/usr/lib64/python3.3/site-packages/numpy/distutils/system_info.py", line 499, in get_info > raise self.notfounderror(self.notfounderror.__doc__) >numpy.distutils.system_info.BlasNotFoundError: > Blas (http://www.netlib.org/blas/) libraries not found. > Directories to search for the libraries can be specified in the > numpy/distutils/site.cfg file (section [blas]) or by setting > the BLAS environment variable. > [31;01m*[0m environment, line 2852: Called multibuild_foreach_variant '_multibuild_parallel' '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile' > [31;01m*[0m environment, line 2800: Called _multibuild_run '_multibuild_parallel' '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile' > [31;01m*[0m environment, line 2798: Called _multibuild_parallel '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile' > [31;01m*[0m ERROR: sci-libs/scipy-0.12.1::gentoo failed (compile phase): > [31;01m*[0m (no error message) > [31;01m*[0m environment, line 2843: Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'python_compile' > [31;01m*[0m > [31;01m*[0m Call stack: > [31;01m*[0m environment, line 874: Called distutils-r1_run_phase 'python_compile' > [31;01m*[0m ebuild.sh, line 93: Called src_compile > [31;01m*[0m environment, line 3956: Called distutils-r1_src_compile > [31;01m*[0m environment, line 1418: Called python_compile > [31;01m*[0m environment, line 1427: Called _distutils-r1_run_foreach_impl 'python_compile' > [31;01m*[0m environment, line 3276: Called distutils-r1_python_compile 'config_fc' '--noopt' '--noarch' > [31;01m*[0m environment, line 281: Called python_parallel_foreach_impl 'distutils-r1_run_phase' 'python_compile' > [31;01m*[0m environment, line 1301: Called esetup.py 'build' 'config_fc' '--noopt' '--noarch' > [31;01m*[0m environment, line 1868: Called die > [31;01m*[0m The specific snippet of code: > [31;01m*[0m environment, line 3690: Called multibuild_parallel_foreach_variant '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile' > [31;01m*[0m environment, line 2852: Called multibuild_foreach_variant '_multibuild_parallel' '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile' > [31;01m*[0m environment, line 2800: Called _multibuild_run '_multibuild_parallel' '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile' > [31;01m*[0m "${@}" || die > [31;01m*[0m > [31;01m*[0m environment, line 2798: Called _multibuild_parallel '_python_multibuild_wrapper' 'distutils-r1_run_phase' 'python_compile' > [31;01m*[0m If you need support, post the output of `emerge --info '=sci-libs/scipy-0.12.1::gentoo'`, > [31;01m*[0m the complete build log and the output of `emerge -pqv '=sci-libs/scipy-0.12.1::gentoo'`. > [31;01m*[0m environment, line 2843: Called _python_multibuild_wrapper 'distutils-r1_run_phase' 'python_compile' > [31;01m*[0m The complete build log is located at '/var/tmp/portage/sci-libs/scipy-0.12.1/temp/build.log'. > [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-libs/scipy-0.12.1/temp/environment'. > [31;01m*[0m environment, line 874: Called distutils-r1_run_phase 'python_compile' > [31;01m*[0m Working directory: '/var/tmp/portage/sci-libs/scipy-0.12.1/work/scipy-0.12.1-python2_7' > [31;01m*[0m S: '/var/tmp/portage/sci-libs/scipy-0.12.1/work/scipy-0.12.1' > [31;01m*[0m environment, line 1418: Called python_compile > [31;01m*[0m environment, line 3276: Called distutils-r1_python_compile 'config_fc' '--noopt' '--noarch' > [31;01m*[0m environment, line 1301: Called esetup.py 'build' 'config_fc' '--noopt' '--noarch' > [31;01m*[0m environment, line 1868: Called die > [31;01m*[0m The specific snippet of code: > [31;01m*[0m "${@}" || die > [31;01m*[0m > [31;01m*[0m If you need support, post the output of `emerge --info '=sci-libs/scipy-0.12.1::gentoo'`, > [31;01m*[0m the complete build log and the output of `emerge -pqv '=sci-libs/scipy-0.12.1::gentoo'`. > [31;01m*[0m The complete build log is located at '/var/tmp/portage/sci-libs/scipy-0.12.1/temp/build.log'. > [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-libs/scipy-0.12.1/temp/environment'. > [31;01m*[0m Working directory: '/var/tmp/portage/sci-libs/scipy-0.12.1/work/scipy-0.12.1-python3_3' > [31;01m*[0m S: '/var/tmp/portage/sci-libs/scipy-0.12.1/work/scipy-0.12.1' >/usr/lib64/portage/bin/isolated-functions.sh: line 219: kill: (9697) - No such process
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bug 502406
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