build.log

build.log (text/plain), 12.78 KB, created by Jonas Stein on 2014-02-11 19:38:25 UTC

[32;01m * [39;49;00mPackage:    sci-chemistry/chemtool-1.6.12
[32;01m * [39;49;00mRepository: gentoo
[32;01m * [39;49;00mMaintainer: [e-mail]
[32;01m * [39;49;00mUSE:        abi_x86_64 amd64 elibc_glibc kernel_linux multilib nls policykit userland_GNU
[32;01m * [39;49;00mFEATURES:   preserve-libs sandbox userpriv usersandbox
>>> Unpacking source...
>>> Unpacking chemtool-1.6.12.tar.gz to /var/tmp/portage/sci-chemistry/chemtool-1.6.12/work
>>> Source unpacked in /var/tmp/portage/sci-chemistry/chemtool-1.6.12/work
>>> Compiling source in /var/tmp/portage/sci-chemistry/chemtool-1.6.12/work/chemtool-1.6.12 ...
 * econf: updating chemtool-1.6.12/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating chemtool-1.6.12/config.sub with /usr/share/gnuconfig/config.sub
./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 --without-kdedir --without-gnomedir --enable-menu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether NLS is requested... yes
checking for msgfmt... /usr/bin/msgfmt
checking for gmsgfmt... /usr/bin/gmsgfmt
checking for xgettext... /usr/bin/xgettext
checking for msgmerge... /usr/bin/msgmerge
checking for style of include used by make... GNU
checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ANSI C... none needed
checking dependency style of x86_64-pc-linux-gnu-gcc... none
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for ld used by GCC... /usr/x86_64-pc-linux-gnu/bin/ld
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for shared library run path origin... done
checking whether NLS is requested... yes
checking for GNU gettext in libc... yes
checking whether to use NLS... yes
checking where the gettext function comes from... libc
checking for x86_64-pc-linux-gnu-gcc... (cached) x86_64-pc-linux-gnu-gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... (cached) yes
checking for x86_64-pc-linux-gnu-gcc option to accept ANSI C... (cached) none needed
checking dependency style of x86_64-pc-linux-gnu-gcc... (cached) none
checking whether make sets $(MAKE)... (cached) yes
checking for a BSD-compatible install... /usr/bin/install -c
checking whether ln -s works... yes
checking for cp... /bin/cp
checking for rm... /bin/rm
checking for main in -libs... no
checking for acos in -lm... yes
checking for pkg-config... /usr/bin/pkg-config
checking for GTK version and compile options ... -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libdrm -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2 
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for X... libraries /usr/lib64, headers 
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for strings.h... (cached) yes
checking for unistd.h... (cached) yes
checking libintl.h usability... yes
checking libintl.h presence... yes
checking for libintl.h... yes
checking for an ANSI C-conforming const... yes
checking for size_t... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for working POSIX fnmatch... yes
checking for working memcmp... yes
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for getpagesize... yes
checking for working mmap... yes
checking for getcwd... yes
checking for getwd... yes
checking for mkdir... yes
checking for strtod... yes
checking for strtol... yes
checking for KDE ... no
checking for GNOME ... no
checking whether to enable libundo... yes
checking whether to use pull-down menus... yes
checking whether to enable emf output... no
checking whether standard GTK dialogs should be used instead of our own... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src-cht/Makefile
config.status: creating m4/Makefile
config.status: creating po/Makefile.in
config.status: creating po/Makefile
config.status: creating config.h
config.status: executing default-1 commands
config.status: creating po/POTFILES
config.status: creating po/Makefile
config.status: executing depfiles commands
make -j9 
make  all-recursive
make[1]: Entering directory `/var/tmp/portage/sci-chemistry/chemtool-1.6.12/work/chemtool-1.6.12'
Making all in m4
make[2]: Entering directory `/var/tmp/portage/sci-chemistry/chemtool-1.6.12/work/chemtool-1.6.12/m4'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/chemtool-1.6.12/work/chemtool-1.6.12/m4'
Making all in po
make[2]: Entering directory `/var/tmp/portage/sci-chemistry/chemtool-1.6.12/work/chemtool-1.6.12/po'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/chemtool-1.6.12/work/chemtool-1.6.12/po'
Making all in src-cht
make[2]: Entering directory `/var/tmp/portage/sci-chemistry/chemtool-1.6.12/work/chemtool-1.6.12/src-cht'
x86_64-pc-linux-gnu-gcc -march=native -O2 -pipe cht.c -o cht
make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/chemtool-1.6.12/work/chemtool-1.6.12/src-cht'
make[2]: Entering directory `/var/tmp/portage/sci-chemistry/chemtool-1.6.12/work/chemtool-1.6.12'
x86_64-pc-linux-gnu-gcc -DLOCALEDIR=\"/usr/share/locale\" -DHAVE_CONFIG_H -I. -I. -I.  -I. -I. -DGTK2 -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libdrm -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2     -march=native -O2 -pipe -c main.c
x86_64-pc-linux-gnu-gcc -DLOCALEDIR=\"/usr/share/locale\" -DHAVE_CONFIG_H -I. -I. -I.  -I. -I. -DGTK2 -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libdrm -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2     -march=native -O2 -pipe -c draw.c
x86_64-pc-linux-gnu-gcc -DLOCALEDIR=\"/usr/share/locale\" -DHAVE_CONFIG_H -I. -I. -I.  -I. -I. -DGTK2 -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libdrm -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2     -march=native -O2 -pipe -c graph.c
x86_64-pc-linux-gnu-gcc -DLOCALEDIR=\"/usr/share/locale\" -DHAVE_CONFIG_H -I. -I. -I.  -I. -I. -DGTK2 -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libdrm -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2     -march=native -O2 -pipe -c chemproc.c
x86_64-pc-linux-gnu-gcc -DLOCALEDIR=\"/usr/share/locale\" -DHAVE_CONFIG_H -I. -I. -I.  -I. -I. -DGTK2 -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libdrm -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2     -march=native -O2 -pipe -c undo.c
x86_64-pc-linux-gnu-gcc -DLOCALEDIR=\"/usr/share/locale\" -DHAVE_CONFIG_H -I. -I. -I.  -I. -I. -DGTK2 -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libdrm -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2     -march=native -O2 -pipe -c inout.c
x86_64-pc-linux-gnu-gcc -DLOCALEDIR=\"/usr/share/locale\" -DHAVE_CONFIG_H -I. -I. -I.  -I. -I. -DGTK2 -pthread -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/libdrm -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/libpng16 -I/usr/include/pango-1.0 -I/usr/include/harfbuzz -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/freetype2     -march=native -O2 -pipe -c -o cht.o `test -f 'src-cht/cht.c' || echo './'`src-cht/cht.c
inout.c: In function 'check_fig2sxd':
inout.c:5967:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result]
inout.c: In function 'check_babel':
inout.c:5889:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
inout.c: In function 'import_pdb':
inout.c:732:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result]
x86_64-pc-linux-gnu-gcc  -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed -o src-cht/cht  cht.o -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lfreetype -lfontconfig   -lm 
x86_64-pc-linux-gnu-gcc  -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed -o chemtool  main.o draw.o graph.o chemproc.o undo.o inout.o -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -latk-1.0 -lcairo -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lfreetype -lfontconfig   -lm 
/usr/lib/gcc/x86_64-pc-linux-gnu/4.7.3/../../../../x86_64-pc-linux-gnu/bin/ld: main.o: undefined reference to symbol 'XWarpPointer'
/usr/lib/gcc/x86_64-pc-linux-gnu/4.7.3/../../../../x86_64-pc-linux-gnu/bin/ld: note: 'XWarpPointer' is defined in DSO /usr/lib64/libX11.so.6 so try adding it to the linker command line
/usr/lib64/libX11.so.6: could not read symbols: Invalid operation
collect2: error: ld returned 1 exit status
make[2]: *** [chemtool] Error 1
make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/chemtool-1.6.12/work/chemtool-1.6.12'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/chemtool-1.6.12/work/chemtool-1.6.12'
make: *** [all] Error 2
emake failed
 [31;01m*[0m ERROR: sci-chemistry/chemtool-1.6.12::gentoo failed (compile phase):
 [31;01m*[0m   make failed
 [31;01m*[0m 
 [31;01m*[0m Call stack:
 [31;01m*[0m     ebuild.sh, line  93:  Called src_compile
 [31;01m*[0m   environment, line 1850:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m       emake || die "make failed"
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the output of `emerge --info '=sci-chemistry/chemtool-1.6.12::gentoo'`,
 [31;01m*[0m the complete build log and the output of `emerge -pqv '=sci-chemistry/chemtool-1.6.12::gentoo'`.
 [31;01m*[0m The complete build log is located at '/var/tmp/portage/sci-chemistry/chemtool-1.6.12/temp/build.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/chemtool-1.6.12/temp/environment'.
 [31;01m*[0m Working directory: '/var/tmp/portage/sci-chemistry/chemtool-1.6.12/work/chemtool-1.6.12'
 [31;01m*[0m S: '/var/tmp/portage/sci-chemistry/chemtool-1.6.12/work/chemtool-1.6.12'