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Gentoo's Bugzilla – Attachment 358576 Details for
Bug 484046
sci-mathematics/pymc-2.2 - /usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../../../lib64/crt1.o: In function `_start': (.text+0x20): undefined reference to `main'
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full build log
build.log (text/x-log), 68.45 KB, created by
Luciano
on 2013-09-13 13:19:59 UTC
(
hide
)
Description:
full build log
Filename:
MIME Type:
Creator:
Luciano
Created:
2013-09-13 13:19:59 UTC
Size:
68.45 KB
patch
obsolete
> * Package: sci-mathematics/pymc-2.2 > * Repository: gentoo > * Maintainer: heroxbd@gentoo.org > * USE: abi_x86_64 amd64 elibc_glibc kernel_linux multilib userland_GNU > * FEATURES: preserve-libs sandbox >>>> Unpacking source... >>>> Source unpacked in /tmp/portage/sci-mathematics/pymc-2.2/work >>>> Preparing source in /tmp/portage/sci-mathematics/pymc-2.2/work/pymc-2.2 ... >>>> Source prepared. >>>> Configuring source in /tmp/portage/sci-mathematics/pymc-2.2/work/pymc-2.2 ... >>>> Source configured. >>>> Compiling source in /tmp/portage/sci-mathematics/pymc-2.2/work/pymc-2.2 ... >python2.7 setup.py build --fcompiler=gnu95 >/usr/lib64/python2.7/site-packages/numpy/distutils/system_info.py:1402: UserWarning: > Atlas (http://math-atlas.sourceforge.net/) libraries not found. > Directories to search for the libraries can be specified in the > numpy/distutils/site.cfg file (section [atlas]) or by setting > the ATLAS environment variable. > warnings.warn(AtlasNotFoundError.__doc__) >/usr/lib64/python2.7/site-packages/numpy/distutils/system_info.py:558: UserWarning: Specified path is invalid. > warnings.warn('Specified path %s is invalid.' % d) >[39mrunning build[0m >[39mrunning config_cc[0m >[39munifing config_cc, config, build_clib, build_ext, build commands --compiler options[0m >[39mrunning config_fc[0m >[39munifing config_fc, config, build_clib, build_ext, build commands --fcompiler options[0m >[39mrunning build_src[0m >[39mbuild_src[0m >[39mbuilding extension "pymc.flib" sources[0m >[39mf2py options: ['skip:ppnd7'][0m >[39mf2py:> build/src.linux-x86_64-2.7/pymc/flibmodule.c[0m >[39mcreating build[0m >[39mcreating build/src.linux-x86_64-2.7[0m >[39mcreating build/src.linux-x86_64-2.7/pymc[0m >IOError: [Errno 2] No such file or directory: 'skip:ppnd7'. Skipping file "skip:ppnd7". >Reading fortran codes... > Reading file 'pymc/flib.f' (format:fix,strict) >updatevars:gradlike: attempt to change 'dimension(nx)' to 'dimension(na)'. Ignoring. >updatevars:gradlike: attempt to change 'dimension(nx)' to 'dimension(nb)'. Ignoring. >updatevars:gradlike: attempt to change 'dimension (nmu)' to 'dimension(nmu)'. Ignoring. >updatevars:gradlike: attempt to change 'dimension (na)' to 'dimension(na)'. Ignoring. > Reading file 'pymc/histogram.f' (format:fix,strict) >rmbadname1: Replacing "index" with "index_bn". > Reading file 'pymc/flib_blas.f' (format:fix,strict) > Reading file 'pymc/blas_wrap.f' (format:fix,strict) > Reading file 'pymc/math.f' (format:fix,strict) > Reading file 'pymc/gibbsit.f' (format:fix,strict) >updatevars: "character curterms(20)*24" is mapped to "character curterms(20,24)" >updatevars: "character septerms(20)*24" is mapped to "character septerms(20,24)" >updatevars: "character tokens(maxtok)*(*)" is mapped to "character tokens(maxtok,(*))" >rmbadname1: Replacing "index" with "index_bn". >rmbadname1: Replacing "len" with "len_bn". >Line #1125 in pymc/gibbsit.f:" DOUBLE PRECISION INTENT(CACHE,HIDE), DIMENSION(2*ITERACNT) :: WORK" > updatevars: attempt to change the type of "work" ("integer") to "double precision". Ignoring. >Post-processing... > Block: flib > Block: symmetrize > Block: logsum > Block: logsum_cpx > Block: combinationln >{'attrspec': ['intent(hide)']} >In: :flib:pymc/flib.f:expand_triangular >vars2fortran: No typespec for argument "nf". >{'attrspec': ['intent(hide)']} >In: :flib:pymc/flib.f:expand_triangular >vars2fortran: No typespec for argument "n". > Block: expand_triangular > Block: mod_to_circle > Block: standardize > Block: gammln > Block: mvgammln > Block: factrl > Block: factln > Block: normcdf > Block: sn_like > Block: rskewnorm > Block: uniform_like > Block: uniform_grad_x > Block: uniform_grad_l > Block: uniform_grad_u > Block: duniform_like > Block: exponweib > Block: exponweib_gx > Block: exponweib_gl > Block: exponweib_gk > Block: exponweib_ga > Block: exponweib_gs > Block: exponweib_ppf > Block: constrain > Block: poisson > Block: poisson_gmu > Block: trpoisson > Block: trpoisson_gmu > Block: t > Block: t_grad_x > Block: t_grad_nu > Block: chi2_grad_nu > Block: nct > Block: multinomial > Block: weibull > Block: weibull_gx > Block: weibull_ga > Block: weibull_gb > Block: logistic > Block: normal > Block: normal_grad_tau > Block: normal_grad_x > Block: normal_grad_mu > Block: hnormal > Block: hnormal_gradx > Block: hnormal_gradtau > Block: lognormal > Block: lognormal_gradx > Block: lognormal_gradmu > Block: lognormal_gradtau > Block: arlognormal > Block: gev > Block: gev_ppf > Block: gamma > Block: gamma_grad_x > Block: gamma_grad_alpha > Block: gamma_grad_beta > Block: igamma > Block: igamma_grad_x > Block: igamma_grad_alpha > Block: igamma_grad_beta > Block: hyperg > Block: geometric > Block: geometric_gp > Block: dirichlet > Block: cauchy > Block: cauchy_grad_x > Block: cauchy_grad_a > Block: cauchy_grad_b > Block: negbin > Block: negbin2 > Block: negbin2_gmu > Block: negbin2_ga > Block: binomial > Block: binomial_gp > Block: bernoulli > Block: bern_grad_p > Block: beta_like > Block: beta_grad_x > Block: beta_grad_a > Block: beta_grad_b > Block: betabin_like > Block: betabin_ga > Block: betabin_gb > Block: mvhyperg > Block: dirmultinom > Block: wishart > Block: trace > Block: gamfun > Block: gammds > Block: psi > Block: gser > Block: gcf > Block: gammq > Block: trans > Block: matmult > Block: dtrm > Block: elgs > Block: bico > Block: chol > Block: hermpoly > Block: set_uniform > Block: categorical > Block: rcat > Block: logit > Block: invlogit > Block: stukel_logit > Block: stukel_invlogit > Block: vonmises > Block: pareto > Block: truncated_pareto > Block: fixed_binsize >sortvarnames: failed to compute dependencies because of cyclic dependencies between x, nx > Block: weighted_fixed_binsize >sortvarnames: failed to compute dependencies because of cyclic dependencies between w, x, nx > Block: fixed_binsize_nd >sortvarnames: failed to compute dependencies because of cyclic dependencies between n, nx, bin0, delta, x, d >{'attrspec': ['dimension(n)']} >In: :flib:pymc/histogram.f:qsorti >vars2fortran: No typespec for argument "ord". > Block: qsorti >"object of type 'builtin_function_or_method' has no len()" in evaluating 'len(ord)' (available names: []) > Block: checksymm > Block: chol_mvnorm > Block: cov_mvnorm > Block: prec_mvnorm > Block: blas_wishart > Block: blas_wishart_cov > Block: blas_inv_wishart >{'attrspec': ['intent(hide)']} >In: :flib:pymc/blas_wrap.f:dcopy_wrap >vars2fortran: No typespec for argument "nx". > Block: dcopy_wrap > Block: dtrmm_wrap > Block: dtrsm_wrap > Block: dpotrf_wrap > Block: dchdc_wrap > Block: dpotrs_wrap > Block: ppnd16 > Block: calerf > Block: derf > Block: derfc > Block: derfcx > Block: gibbsit > Block: matinput > Block: vecinput > Block: oneparse > Block: gibbmain > Block: empquant > Block: dichot > Block: thin > Block: mctest > Block: indtest > Block: mcest > Block: ppnd7 > Block: ssort >Post-processing (stage 2)... >Building modules... > Building module "flib"... > Constructing wrapper function "symmetrize"... > symmetrize(c,[cmin,cmax]) > Constructing wrapper function "logsum"... > s = logsum(x) > Constructing wrapper function "logsum_cpx"... > s = logsum_cpx(x) > Creating wrapper for Fortran function "combinationln"("combinationln")... > Constructing wrapper function "combinationln"... > combinationln = combinationln(n,k) > Constructing wrapper function "expand_triangular"... > t = expand_triangular(d,f) > Constructing wrapper function "mod_to_circle"... > mx = mod_to_circle(x,u,l) > Constructing wrapper function "standardize"... > z = standardize(x,loc,scale) > Creating wrapper for Fortran function "gammln"("gammln")... > Constructing wrapper function "gammln"... > gammln = gammln(xx) > Creating wrapper for Fortran function "mvgammln"("mvgammln")... > Constructing wrapper function "mvgammln"... > mvgammln = mvgammln(x,k) > Creating wrapper for Fortran function "factrl"("factrl")... > Constructing wrapper function "factrl"... > factrl = factrl(n) > Creating wrapper for Fortran function "factln"("factln")... > Constructing wrapper function "factln"... > factln = factln(n) > Constructing wrapper function "normcdf"... > normcdf(x) > Constructing wrapper function "sn_like"... > like = sn_like(x,mu,tau,alph) > Constructing wrapper function "rskewnorm"... > x = rskewnorm(nx,mu,tau,alph,rn) > Constructing wrapper function "uniform_like"... > like = uniform_like(x,lower,upper) > Constructing wrapper function "uniform_grad_x"... > gradxlike = uniform_grad_x(x,lower,upper) > Constructing wrapper function "uniform_grad_l"... > gradllike = uniform_grad_l(x,lower,upper) > Constructing wrapper function "uniform_grad_u"... > gradulike = uniform_grad_u(x,lower,upper) > Constructing wrapper function "duniform_like"... > like = duniform_like(x,lower,upper) > Constructing wrapper function "exponweib"... > like = exponweib(x,a,c,loc,scale) > Constructing wrapper function "exponweib_gx"... > gradlike = exponweib_gx(x,alpha,k,loc,scale) > Constructing wrapper function "exponweib_gl"... > gradlike = exponweib_gl(x,alpha,k,loc,scale) > Constructing wrapper function "exponweib_gk"... > gradlike = exponweib_gk(x,alpha,k,loc,scale) > Constructing wrapper function "exponweib_ga"... > gradlike = exponweib_ga(x,alpha,k,loc,scale,[nk]) > Constructing wrapper function "exponweib_gs"... > gradlike = exponweib_gs(x,alpha,k,loc,scale) > Constructing wrapper function "exponweib_ppf"... > ppf = exponweib_ppf(q,a,c) > Constructing wrapper function "constrain"... > pass = constrain(x,a,b,allow_equal) > Constructing wrapper function "poisson"... > like = poisson(x,mu) > Constructing wrapper function "poisson_gmu"... > gradlike = poisson_gmu(x,mu) > Constructing wrapper function "trpoisson"... > like = trpoisson(x,mu,k) > Constructing wrapper function "trpoisson_gmu"... > gradlike = trpoisson_gmu(x,mu,k) > Constructing wrapper function "t"... > like = t(x,nu) > Constructing wrapper function "t_grad_x"... > gradlikex = t_grad_x(x,nu) > Constructing wrapper function "t_grad_nu"... > gradlikenu = t_grad_nu(x,nu) > Constructing wrapper function "chi2_grad_nu"... > gradlikenu = chi2_grad_nu(x,nu) > Constructing wrapper function "nct"... > like = nct(x,mu,lam,nu) > Constructing wrapper function "multinomial"... > like = multinomial(x,n,p) > Constructing wrapper function "weibull"... > like = weibull(x,alpha,beta) > Constructing wrapper function "weibull_gx"... > gradlike = weibull_gx(x,alpha,beta) > Constructing wrapper function "weibull_ga"... > gradlike = weibull_ga(x,alpha,beta) > Constructing wrapper function "weibull_gb"... > gradlike = weibull_gb(x,alpha,beta) > Constructing wrapper function "logistic"... > like = logistic(x,mu,tau) > Constructing wrapper function "normal"... > like = normal(x,mu,tau) > Constructing wrapper function "normal_grad_tau"... > grad_tau_like = normal_grad_tau(x,mu,tau) > Constructing wrapper function "normal_grad_x"... > grad_x_like = normal_grad_x(x,mu,tau) > Constructing wrapper function "normal_grad_mu"... > gradmulike = normal_grad_mu(x,mu,tau) > Constructing wrapper function "hnormal"... > like = hnormal(x,tau) > Constructing wrapper function "hnormal_gradx"... > gradlike = hnormal_gradx(x,tau) > Constructing wrapper function "hnormal_gradtau"... > gradlike = hnormal_gradtau(x,tau) > Constructing wrapper function "lognormal"... > like = lognormal(x,mu,tau) > Constructing wrapper function "lognormal_gradx"... > gradlike = lognormal_gradx(x,mu,tau) > Constructing wrapper function "lognormal_gradmu"... > gradlike = lognormal_gradmu(x,mu,tau) > Constructing wrapper function "lognormal_gradtau"... > gradlike = lognormal_gradtau(x,mu,tau) > Constructing wrapper function "arlognormal"... > like = arlognormal(x,mu,sigma,rho,beta) > Constructing wrapper function "gev"... > like = gev(x,xi,mu,sigma) > Constructing wrapper function "gev_ppf"... > ppf = gev_ppf(q,xi) > Constructing wrapper function "gamma"... > like = gamma(x,alpha,beta) > Constructing wrapper function "gamma_grad_x"... > gradxlike = gamma_grad_x(x,alpha,beta) > Constructing wrapper function "gamma_grad_alpha"... > gradalphalike = gamma_grad_alpha(x,alpha,beta) > Constructing wrapper function "gamma_grad_beta"... > gradbetalike = gamma_grad_beta(x,alpha,beta) > Constructing wrapper function "igamma"... > like = igamma(x,alpha,beta) > Constructing wrapper function "igamma_grad_x"... > gradxlike = igamma_grad_x(x,alpha,beta) > Constructing wrapper function "igamma_grad_alpha"... > gradalphalike = igamma_grad_alpha(x,alpha,beta) > Constructing wrapper function "igamma_grad_beta"... > gradbetalike = igamma_grad_beta(x,alpha,beta) > Constructing wrapper function "hyperg"... > like = hyperg(x,draws,success,total) > Constructing wrapper function "geometric"... > like = geometric(x,p) > Constructing wrapper function "geometric_gp"... > gradlike = geometric_gp(x,p) > Constructing wrapper function "dirichlet"... > like = dirichlet(x,theta) > Constructing wrapper function "cauchy"... > like = cauchy(x,alpha,beta) > Constructing wrapper function "cauchy_grad_x"... > gradlike = cauchy_grad_x(x,alpha,beta) > Constructing wrapper function "cauchy_grad_a"... > gradlike = cauchy_grad_a(x,alpha,beta) > Constructing wrapper function "cauchy_grad_b"... > gradlike = cauchy_grad_b(x,alpha,beta) > Constructing wrapper function "negbin"... > like = negbin(x,r,p) > Constructing wrapper function "negbin2"... > like = negbin2(x,mu,a) > Constructing wrapper function "negbin2_gmu"... > gradlike = negbin2_gmu(x,mu,alpha) > Constructing wrapper function "negbin2_ga"... > gradlike = negbin2_ga(x,mu,alpha) > Constructing wrapper function "binomial"... > like = binomial(x,n,p) > Constructing wrapper function "binomial_gp"... > gradlike = binomial_gp(x,n,p) > Constructing wrapper function "bernoulli"... > like = bernoulli(x,p) > Constructing wrapper function "bern_grad_p"... > grad_like = bern_grad_p(x,p) > Constructing wrapper function "beta_like"... > like = beta_like(x,alpha,beta) > Constructing wrapper function "beta_grad_x"... > gradlikex = beta_grad_x(x,alpha,beta) > Constructing wrapper function "beta_grad_a"... > gradlikea = beta_grad_a(x,alpha,beta) > Constructing wrapper function "beta_grad_b"... > gradlikeb = beta_grad_b(x,alpha,beta) > Constructing wrapper function "betabin_like"... > like = betabin_like(x,alpha,beta,n) > Constructing wrapper function "betabin_ga"... > gradlike = betabin_ga(x,alpha,beta,n) > Constructing wrapper function "betabin_gb"... > gradlike = betabin_gb(x,alpha,beta,n) > Constructing wrapper function "mvhyperg"... > like = mvhyperg(x,color) > Constructing wrapper function "dirmultinom"... > like = dirmultinom(x,theta) > Constructing wrapper function "wishart"... > like = wishart(x,n,sigma) > Constructing wrapper function "trace"... > trace(mat,tr,[k]) > Constructing wrapper function "gamfun"... > gx = gamfun(xx) > Creating wrapper for Fortran function "gammds"("gammds")... > Constructing wrapper function "gammds"... > gammds = gammds(y,p,ifault) > Creating wrapper for Fortran function "psi"("psi")... > Constructing wrapper function "psi"... > psi = psi(x) > Constructing wrapper function "gser"... > gser(gamser,a,x,gln) > Constructing wrapper function "gcf"... > gcf(gammcf,a,x,gln) > Creating wrapper for Fortran function "gammq"("gammq")... > Constructing wrapper function "gammq"... > gammq = gammq(a,x) > Constructing wrapper function "trans"... > tmat = trans(mat) > Constructing wrapper function "matmult"... > prod = matmult(mat1,mat2) > Constructing wrapper function "dtrm"... > d = dtrm(a) > Constructing wrapper function "elgs"... > elgs(a,indx,[n]) > Creating wrapper for Fortran function "bico"("bico")... > Constructing wrapper function "bico"... > bico = bico(n,k) > Constructing wrapper function "chol"... > c = chol(a,[n]) > Constructing wrapper function "hermpoly"... > cx = hermpoly(n,x) > Constructing wrapper function "set_uniform"... > set_uniform(seed1,seed2) > Constructing wrapper function "categorical"... > like = categorical(x,p) > Constructing wrapper function "rcat"... > s = rcat(p,rands) > Constructing wrapper function "logit"... > ltheta = logit(theta) > Constructing wrapper function "invlogit"... > theta = invlogit(ltheta) > Constructing wrapper function "stukel_logit"... > ltheta = stukel_logit(theta,a1,a2,[overwrite_theta]) > Constructing wrapper function "stukel_invlogit"... > theta = stukel_invlogit(ltheta,a1,a2,[overwrite_ltheta]) > Constructing wrapper function "vonmises"... > like = vonmises(x,mu,kappa) > Constructing wrapper function "pareto"... > like = pareto(x,alpha,m) > Constructing wrapper function "truncated_pareto"... > like = truncated_pareto(x,alpha,m,b) > Constructing wrapper function "fixed_binsize"... > h = fixed_binsize(x,bin0,delta,n) > Constructing wrapper function "weighted_fixed_binsize"... > h = weighted_fixed_binsize(x,w,bin0,delta,n) > Constructing wrapper function "fixed_binsize_nd"... > count = fixed_binsize_nd(x,bin0,delta,n,nc) > Constructing wrapper function "qsorti"... > qsorti(ord,a,[n]) > Constructing wrapper function "checksymm"... > cs = checksymm(x) > Constructing wrapper function "chol_mvnorm"... > like = chol_mvnorm(x,mu,sig,[overwrite_x,overwrite_mu]) > Constructing wrapper function "cov_mvnorm"... > like = cov_mvnorm(x,mu,c,[overwrite_x,overwrite_mu,overwrite_c]) > Constructing wrapper function "prec_mvnorm"... > like = prec_mvnorm(x,mu,tau,[overwrite_x,overwrite_mu,overwrite_tau]) > Constructing wrapper function "blas_wishart"... > like = blas_wishart(x,n,t,[overwrite_x,overwrite_t]) > Constructing wrapper function "blas_wishart_cov"... > like = blas_wishart_cov(x,n,v,[overwrite_x,overwrite_v]) > Constructing wrapper function "blas_inv_wishart"... > like = blas_inv_wishart(x,n,t,[overwrite_x,overwrite_t]) > Constructing wrapper function "dcopy_wrap"... > dcopy_wrap(x,y) > Constructing wrapper function "dtrmm_wrap"... > dtrmm_wrap(a,b,side,transa,uplo,alpha) > Constructing wrapper function "dtrsm_wrap"... > dtrsm_wrap(a,b,side,transa,uplo,alpha) > Constructing wrapper function "dpotrf_wrap"... > info = dpotrf_wrap(a) > Constructing wrapper function "dchdc_wrap"... > piv,info = dchdc_wrap(a) > Constructing wrapper function "dpotrs_wrap"... > info = dpotrs_wrap(chol_fac,b,[uplo]) > Creating wrapper for Fortran function "ppnd16"("ppnd16")... > Constructing wrapper function "ppnd16"... > ppnd16 = ppnd16(p,ifault) > Constructing wrapper function "calerf"... > calerf(arg,result,jint) > Creating wrapper for Fortran function "derf"("derf")... > Constructing wrapper function "derf"... > derf = derf(x) > Creating wrapper for Fortran function "derfc"("derfc")... > Constructing wrapper function "derfc"... > derfc = derfc(x) > Creating wrapper for Fortran function "derfcx"("derfcx")... > Constructing wrapper function "derfcx"... > derfcx = derfcx(x) > Constructing wrapper function "matinput"... > matinput(uid,matout,rowused,colused,r15,[rowmax,colmax]) > Constructing wrapper function "vecinput"... > vecinput(uid,vecout,vecused,r15,[vecmax]) > Constructing wrapper function "oneparse"... >getarrdims:warning: assumed shape array, using 0 instead of '(*)' > oneparse(instring,delimit,tokens,tokcnt,r15,[maxtok]) > Constructing wrapper function "gibbmain"... > nmin,kthin,nburn,nprec,kmind = gibbmain(original,q,r,s,epsilon) > Creating wrapper for Fortran function "empquant"("empquant")... > Constructing wrapper function "empquant"... >getarrdims:warning: assumed shape array, using 0 instead of '*' > empquant = empquant(data,q,work,[iteracnt]) > Constructing wrapper function "dichot"... > dichot(data,cutpt,zt,[iteracnt]) > Constructing wrapper function "thin"... > thin(series,kthin,result,thincnt,[iteracnt]) > Constructing wrapper function "mctest"... > mctest(data,g2,bic,[datacnt]) > Constructing wrapper function "indtest"... > indtest(data,g2,bic,[datacnt]) > Constructing wrapper function "mcest"... > mcest(data,alpha,beta,[datacnt]) > Creating wrapper for Fortran function "ppnd7"("ppnd7")... > Constructing wrapper function "ppnd7"... > ppnd7 = ppnd7(p,ifault) > Constructing wrapper function "ssort"... > ssort(x,y,kflag,[n]) > Constructing COMMON block support for "unif_seeds"... > s1,s2 > Wrote C/API module "flib" to file "build/src.linux-x86_64-2.7/pymc/flibmodule.c" > Fortran 77 wrappers are saved to "build/src.linux-x86_64-2.7/pymc/flib-f2pywrappers.f" >[39m adding 'build/src.linux-x86_64-2.7/fortranobject.c' to sources.[0m >[39m adding 'build/src.linux-x86_64-2.7' to include_dirs.[0m >[39mcopying /usr/lib64/python2.7/site-packages/numpy/f2py/src/fortranobject.c -> build/src.linux-x86_64-2.7[0m >[39mcopying /usr/lib64/python2.7/site-packages/numpy/f2py/src/fortranobject.h -> build/src.linux-x86_64-2.7[0m >[39m adding 'build/src.linux-x86_64-2.7/pymc/flib-f2pywrappers.f' to sources.[0m >[39mbuilding extension "pymc.LazyFunction" sources[0m >[39mbuilding extension "pymc.Container_values" sources[0m >[39mbuilding extension "pymc.gp.linalg_utils" sources[0m >[39mf2py options: [][0m >[39mf2py:> build/src.linux-x86_64-2.7/pymc/gp/linalg_utilsmodule.c[0m >[39mcreating build/src.linux-x86_64-2.7/pymc/gp[0m >Reading fortran codes... > Reading file 'pymc/gp/linalg_utils.f' (format:fix,strict) > Reading file 'pymc/blas_wrap.f' (format:fix,strict) >Post-processing... > Block: linalg_utils > Block: remove_duplicates > Block: check_repeats > Block: diag_call > Block: cov_fun >{'attrspec': ['intent(hide)']} >In: :linalg_utils:pymc/gp/linalg_utils.f:basis_diag_call >vars2fortran: No typespec for argument "nbas". > Block: basis_diag_call > Block: gp_array_logp > Block: asqs >{'attrspec': ['intent(hide)']} >In: :linalg_utils:pymc/blas_wrap.f:dcopy_wrap >vars2fortran: No typespec for argument "nx". > Block: dcopy_wrap > Block: dtrmm_wrap > Block: dtrsm_wrap > Block: dpotrf_wrap > Block: dchdc_wrap > Block: dpotrs_wrap >Post-processing (stage 2)... >Building modules... > Constructing call-back function "cb_cov_fun_in_diag_call__user__routines" > def cov_fun(xe): return q > Building module "linalg_utils"... > Constructing wrapper function "remove_duplicates"... > nr,rf,rt,nu,xu,ui = remove_duplicates(x) > Constructing wrapper function "check_repeats"... > f,new_indices,n_new_indices = check_repeats(x,x_sofar,f_sofar) > Constructing wrapper function "diag_call"... > v = diag_call(x,cov_fun,[cov_fun_extra_args]) > Constructing wrapper function "basis_diag_call"... > v = basis_diag_call(basis_x) > Constructing wrapper function "gp_array_logp"... > like = gp_array_logp(x,mu,sig,[overwrite_x,overwrite_mu]) > Constructing wrapper function "asqs"... > asqs(c,s,[cmin,cmax]) > Constructing wrapper function "dcopy_wrap"... > dcopy_wrap(x,y) > Constructing wrapper function "dtrmm_wrap"... > dtrmm_wrap(a,b,side,transa,uplo,alpha) > Constructing wrapper function "dtrsm_wrap"... > dtrsm_wrap(a,b,side,transa,uplo,alpha) > Constructing wrapper function "dpotrf_wrap"... > info = dpotrf_wrap(a) > Constructing wrapper function "dchdc_wrap"... > piv,info = dchdc_wrap(a) > Constructing wrapper function "dpotrs_wrap"... > info = dpotrs_wrap(chol_fac,b,[uplo]) > Wrote C/API module "linalg_utils" to file "build/src.linux-x86_64-2.7/pymc/gp/linalg_utilsmodule.c" >[39m adding 'build/src.linux-x86_64-2.7/fortranobject.c' to sources.[0m >[39m adding 'build/src.linux-x86_64-2.7' to include_dirs.[0m >[39mbuilding extension "pymc.gp.incomplete_chol" sources[0m >[39mf2py options: [][0m >[39mf2py:> build/src.linux-x86_64-2.7/pymc/gp/incomplete_cholmodule.c[0m >Reading fortran codes... > Reading file 'pymc/gp/incomplete_chol.f' (format:fix,strict) >Post-processing... > Block: incomplete_chol > Block: ichol_continue > Block: rowfun > Block: ichol > Block: rowfun >{'attrspec': ['intent(hide)']} >In: :incomplete_chol:pymc/gp/incomplete_chol.f:ichol_basis >vars2fortran: No typespec for argument "n_nug". > Block: ichol_basis > Block: ichol_full >Post-processing (stage 2)... >Building modules... > Constructing call-back function "cb_rowfun_in_ichol_continue__user__routines" > def rowfun(itot,x,rowvec): return > Constructing call-back function "cb_rowfun_in_ichol__user__routines" > def rowfun(i,x,rowvec): return > Building module "incomplete_chol"... > Constructing wrapper function "ichol_continue"... > m,piv = ichol_continue(sig,diag,piv,reltol,x,rowfun,mold,[overwrite_x,rowfun_extra_args]) > Constructing wrapper function "ichol"... > sig,m,piv = ichol(diag,reltol,x,rowfun,rl,[overwrite_x,rowfun_extra_args]) > Constructing wrapper function "ichol_basis"... > sig,p,m = ichol_basis(basis,nug,reltol) > Constructing wrapper function "ichol_full"... > sig,m,p = ichol_full(c,reltol) > Wrote C/API module "incomplete_chol" to file "build/src.linux-x86_64-2.7/pymc/gp/incomplete_cholmodule.c" >[39m adding 'build/src.linux-x86_64-2.7/fortranobject.c' to sources.[0m >[39m adding 'build/src.linux-x86_64-2.7' to include_dirs.[0m >[39mbuilding extension "pymc.gp.cov_funs.isotropic_cov_funs" sources[0m >[39mf2py options: [][0m >[39mf2py:> build/src.linux-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funsmodule.c[0m >[39mcreating build/src.linux-x86_64-2.7/pymc/gp/cov_funs[0m >Reading fortran codes... > Reading file 'pymc/gp/cov_funs/isotropic_cov_funs.f' (format:fix,strict) > Reading file 'blas/BLAS/dscal.f' (format:fix,strict) >Post-processing... > Block: isotropic_cov_funs > Block: imul > Block: symmetrize > Block: matern > Block: nsmatrn > Block: stein_spatiotemporal > Block: nsst > Block: gaussian > Block: exponential > Block: brownian > Block: frac_brownian > Block: pow_exp > Block: sphere > Block: quadratic > Block: dgamma > Block: rkbesl > Block: dscal >Post-processing (stage 2)... >Building modules... > Building module "isotropic_cov_funs"... > Constructing wrapper function "imul"... > imul(c,a,[cmin,cmax,symm]) > Constructing wrapper function "symmetrize"... > symmetrize(c,[cmin,cmax]) > Constructing wrapper function "matern"... > matern(c,diff_degree,[cmin,cmax,symm]) > Constructing wrapper function "nsmatrn"... > nsmatrn(c,ddx,ddy,hx,hy,nmax,[cmin,cmax,symm]) > Constructing wrapper function "stein_spatiotemporal"... > stein_spatiotemporal(c,gt,origin_val,[cmin,cmax,symm]) > Constructing wrapper function "nsst"... > nsst(c,gt,origin_val,hx,hy,[cmin,cmax,symm]) > Constructing wrapper function "gaussian"... > gaussian(c,[cmin,cmax,symm]) > Constructing wrapper function "exponential"... > exponential(c,[cmin,cmax,symm]) > Constructing wrapper function "brownian"... > brownian(c,x,y,[cmin,cmax,symm]) > Constructing wrapper function "frac_brownian"... > frac_brownian(c,x,y,h,[cmin,cmax,symm]) > Constructing wrapper function "pow_exp"... > pow_exp(c,pow,[cmin,cmax,symm]) > Constructing wrapper function "sphere"... > sphere(c,[cmin,cmax,symm]) > Constructing wrapper function "quadratic"... > quadratic(c,phi,[cmin,cmax,symm]) > Creating wrapper for Fortran function "dgamma"("dgamma")... > Constructing wrapper function "dgamma"... > dgamma = dgamma(x) > Constructing wrapper function "rkbesl"... > bk = rkbesl(x,alpha,nb,ize,ncalc) > Constructing wrapper function "dscal"... >getarrdims:warning: assumed shape array, using 0 instead of '*' > dscal(n,da,dx,incx) > Wrote C/API module "isotropic_cov_funs" to file "build/src.linux-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funsmodule.c" > Fortran 77 wrappers are saved to "build/src.linux-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f" >[39m adding 'build/src.linux-x86_64-2.7/fortranobject.c' to sources.[0m >[39m adding 'build/src.linux-x86_64-2.7' to include_dirs.[0m >[39m adding 'build/src.linux-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f' to sources.[0m >[39mbuilding extension "pymc.gp.cov_funs.distances" sources[0m >[39mf2py options: [][0m >[39mf2py:> build/src.linux-x86_64-2.7/pymc/gp/cov_funs/distancesmodule.c[0m >Reading fortran codes... > Reading file 'pymc/gp/cov_funs/distances.f' (format:fix,strict) >Post-processing... > Block: distances > Block: euclidean > Block: geographic > Block: paniso_geo_rad > Block: aniso_geo_rad >Post-processing (stage 2)... >Building modules... > Building module "distances"... > Constructing wrapper function "euclidean"... > euclidean(d,x,y,[cmin,cmax,symm]) > Constructing wrapper function "geographic"... > geographic(d,x,y,[cmin,cmax,symm]) > Constructing wrapper function "paniso_geo_rad"... > paniso_geo_rad(d,x,y,ctrs,scals,[cmin,cmax,symm]) > Constructing wrapper function "aniso_geo_rad"... > aniso_geo_rad(d,x,y,inc,ecc,[cmin,cmax,symm]) > Wrote C/API module "distances" to file "build/src.linux-x86_64-2.7/pymc/gp/cov_funs/distancesmodule.c" >[39m adding 'build/src.linux-x86_64-2.7/fortranobject.c' to sources.[0m >[39m adding 'build/src.linux-x86_64-2.7' to include_dirs.[0m >[39mbuild_src: building npy-pkg config files[0m >[39mrunning build_py[0m >[39mcreating build/lib.linux-x86_64-2.7[0m >[39mcreating build/lib.linux-x86_64-2.7/pymc[0m >[39mcopying pymc/utils.py -> build/lib.linux-x86_64-2.7/pymc[0m >[39mcopying pymc/threadpool.py -> build/lib.linux-x86_64-2.7/pymc[0m >[39mcopying pymc/six.py -> build/lib.linux-x86_64-2.7/pymc[0m >[39mcopying pymc/progressbar.py -> build/lib.linux-x86_64-2.7/pymc[0m >[39mcopying pymc/graph.py -> build/lib.linux-x86_64-2.7/pymc[0m >[39mcopying pymc/distributions.py -> build/lib.linux-x86_64-2.7/pymc[0m >[39mcopying pymc/diagnostics.py -> build/lib.linux-x86_64-2.7/pymc[0m >[39mcopying pymc/decorators.py -> build/lib.linux-x86_64-2.7/pymc[0m >[39mcopying pymc/datatypes.py -> build/lib.linux-x86_64-2.7/pymc[0m >[39mcopying pymc/calc_utils.py -> build/lib.linux-x86_64-2.7/pymc[0m >[39mcopying pymc/__init__.py -> build/lib.linux-x86_64-2.7/pymc[0m >[39mcopying pymc/StepMethods.py -> build/lib.linux-x86_64-2.7/pymc[0m >[39mcopying pymc/ScipyDistributions.py -> build/lib.linux-x86_64-2.7/pymc[0m >[39mcopying pymc/PyMCObjects.py -> build/lib.linux-x86_64-2.7/pymc[0m >[39mcopying pymc/NumpyDeterministics.py -> build/lib.linux-x86_64-2.7/pymc[0m >[39mcopying pymc/NormalApproximation.py -> build/lib.linux-x86_64-2.7/pymc[0m >[39mcopying pymc/Node.py -> build/lib.linux-x86_64-2.7/pymc[0m >[39mcopying pymc/Model.py -> build/lib.linux-x86_64-2.7/pymc[0m >[39mcopying pymc/Matplot.py -> build/lib.linux-x86_64-2.7/pymc[0m >[39mcopying pymc/MCMC.py -> build/lib.linux-x86_64-2.7/pymc[0m >[39mcopying pymc/InstantiationDecorators.py -> build/lib.linux-x86_64-2.7/pymc[0m >[39mcopying pymc/Container.py -> build/lib.linux-x86_64-2.7/pymc[0m >[39mcopying pymc/CommonDeterministics.py -> build/lib.linux-x86_64-2.7/pymc[0m >[39mcopying pymc/CircularStochastic.py -> build/lib.linux-x86_64-2.7/pymc[0m >[39mcreating build/lib.linux-x86_64-2.7/pymc/database[0m >[39mcopying pymc/database/txt.py -> build/lib.linux-x86_64-2.7/pymc/database[0m >[39mcopying pymc/database/sqlite.py -> build/lib.linux-x86_64-2.7/pymc/database[0m >[39mcopying pymc/database/ram.py -> build/lib.linux-x86_64-2.7/pymc/database[0m >[39mcopying pymc/database/pickle.py -> build/lib.linux-x86_64-2.7/pymc/database[0m >[39mcopying pymc/database/no_trace.py -> build/lib.linux-x86_64-2.7/pymc/database[0m >[39mcopying pymc/database/hdf5.py -> build/lib.linux-x86_64-2.7/pymc/database[0m >[39mcopying pymc/database/base.py -> build/lib.linux-x86_64-2.7/pymc/database[0m >[39mcopying pymc/database/__init__.py -> build/lib.linux-x86_64-2.7/pymc/database[0m >[39mcreating build/lib.linux-x86_64-2.7/pymc/examples[0m >[39mcopying pymc/examples/zip.py -> build/lib.linux-x86_64-2.7/pymc/examples[0m >[39mcopying pymc/examples/weibull_fit.py -> build/lib.linux-x86_64-2.7/pymc/examples[0m >[39mcopying pymc/examples/melanoma_data.py -> build/lib.linux-x86_64-2.7/pymc/examples[0m >[39mcopying pymc/examples/melanoma.py -> build/lib.linux-x86_64-2.7/pymc/examples[0m >[39mcopying pymc/examples/gelman_bioassay.py -> build/lib.linux-x86_64-2.7/pymc/examples[0m >[39mcopying pymc/examples/disaster_model_null.py -> build/lib.linux-x86_64-2.7/pymc/examples[0m >[39mcopying pymc/examples/disaster_model_missing.py -> build/lib.linux-x86_64-2.7/pymc/examples[0m >[39mcopying pymc/examples/disaster_model_linear.py -> build/lib.linux-x86_64-2.7/pymc/examples[0m >[39mcopying pymc/examples/disaster_model_gof.py -> build/lib.linux-x86_64-2.7/pymc/examples[0m >[39mcopying pymc/examples/disaster_model.py -> build/lib.linux-x86_64-2.7/pymc/examples[0m >[39mcopying pymc/examples/custom_step.py -> build/lib.linux-x86_64-2.7/pymc/examples[0m >[39mcopying pymc/examples/__init__.py -> build/lib.linux-x86_64-2.7/pymc/examples[0m >[39mcreating build/lib.linux-x86_64-2.7/pymc/examples/gp[0m >[39mcopying pymc/examples/gp/realizations.py -> build/lib.linux-x86_64-2.7/pymc/examples/gp[0m >[39mcopying pymc/examples/gp/observation.py -> build/lib.linux-x86_64-2.7/pymc/examples/gp[0m >[39mcopying pymc/examples/gp/mesh_choice.py -> build/lib.linux-x86_64-2.7/pymc/examples/gp[0m >[39mcopying pymc/examples/gp/mean.py -> build/lib.linux-x86_64-2.7/pymc/examples/gp[0m >[39mcopying pymc/examples/gp/covparams.py -> build/lib.linux-x86_64-2.7/pymc/examples/gp[0m >[39mcopying pymc/examples/gp/cov.py -> build/lib.linux-x86_64-2.7/pymc/examples/gp[0m >[39mcopying pymc/examples/gp/basiscov.py -> build/lib.linux-x86_64-2.7/pymc/examples/gp[0m >[39mcopying pymc/examples/gp/__init__.py -> build/lib.linux-x86_64-2.7/pymc/examples/gp[0m >[39mcopying pymc/examples/gp/PyMCmodel.py -> build/lib.linux-x86_64-2.7/pymc/examples/gp[0m >[39mcopying pymc/examples/gp/MCMC.py -> build/lib.linux-x86_64-2.7/pymc/examples/gp[0m >[39mcreating build/lib.linux-x86_64-2.7/pymc/tests[0m >[39mcopying pymc/tests/test_utils.py -> build/lib.linux-x86_64-2.7/pymc/tests[0m >[39mcopying pymc/tests/test_special_methods.py -> build/lib.linux-x86_64-2.7/pymc/tests[0m >[39mcopying pymc/tests/test_realization.py -> build/lib.linux-x86_64-2.7/pymc/tests[0m >[39mcopying pymc/tests/test_observation.py -> build/lib.linux-x86_64-2.7/pymc/tests[0m >[39mcopying pymc/tests/test_norm_approx.py -> build/lib.linux-x86_64-2.7/pymc/tests[0m >[39mcopying pymc/tests/test_missing.py -> build/lib.linux-x86_64-2.7/pymc/tests[0m >[39mcopying pymc/tests/test_mean.py -> build/lib.linux-x86_64-2.7/pymc/tests[0m >[39mcopying pymc/tests/test_interactive.py -> build/lib.linux-x86_64-2.7/pymc/tests[0m >[39mcopying pymc/tests/test_instantiation.py -> build/lib.linux-x86_64-2.7/pymc/tests[0m >[39mcopying pymc/tests/test_graph.py -> build/lib.linux-x86_64-2.7/pymc/tests[0m >[39mcopying pymc/tests/test_gradients.py -> build/lib.linux-x86_64-2.7/pymc/tests[0m >[39mcopying pymc/tests/test_distributions.py -> build/lib.linux-x86_64-2.7/pymc/tests[0m >[39mcopying pymc/tests/test_database.py -> build/lib.linux-x86_64-2.7/pymc/tests[0m >[39mcopying pymc/tests/test_cov.py -> build/lib.linux-x86_64-2.7/pymc/tests[0m >[39mcopying pymc/tests/test_convergence.py -> build/lib.linux-x86_64-2.7/pymc/tests[0m >[39mcopying pymc/tests/test_container.py -> build/lib.linux-x86_64-2.7/pymc/tests[0m >[39mcopying pymc/tests/test_binary_step.py -> build/lib.linux-x86_64-2.7/pymc/tests[0m >[39mcopying pymc/tests/test_basiscov.py -> build/lib.linux-x86_64-2.7/pymc/tests[0m >[39mcopying pymc/tests/test_adaptive.py -> build/lib.linux-x86_64-2.7/pymc/tests[0m >[39mcopying pymc/tests/test_MCMCSampler.py -> build/lib.linux-x86_64-2.7/pymc/tests[0m >[39mcopying pymc/tests/test_LazyFunction.py -> build/lib.linux-x86_64-2.7/pymc/tests[0m >[39mcopying pymc/tests/test_GP_MCMC.py -> build/lib.linux-x86_64-2.7/pymc/tests[0m >[39mcopying pymc/tests/test_AM.py -> build/lib.linux-x86_64-2.7/pymc/tests[0m >[39mcopying pymc/tests/objectmodel.py -> build/lib.linux-x86_64-2.7/pymc/tests[0m >[39mcopying pymc/tests/__init__.py -> build/lib.linux-x86_64-2.7/pymc/tests[0m >[39mcreating build/lib.linux-x86_64-2.7/pymc/gp[0m >[39mcopying pymc/gp/step_methods.py -> build/lib.linux-x86_64-2.7/pymc/gp[0m >[39mcopying pymc/gp/gpplots.py -> build/lib.linux-x86_64-2.7/pymc/gp[0m >[39mcopying pymc/gp/gp_submodel.py -> build/lib.linux-x86_64-2.7/pymc/gp[0m >[39mcopying pymc/gp/__init__.py -> build/lib.linux-x86_64-2.7/pymc/gp[0m >[39mcopying pymc/gp/Realization.py -> build/lib.linux-x86_64-2.7/pymc/gp[0m >[39mcopying pymc/gp/NearlyFullRankCovariance.py -> build/lib.linux-x86_64-2.7/pymc/gp[0m >[39mcopying pymc/gp/Mean.py -> build/lib.linux-x86_64-2.7/pymc/gp[0m >[39mcopying pymc/gp/GPutils.py -> build/lib.linux-x86_64-2.7/pymc/gp[0m >[39mcopying pymc/gp/FullRankCovariance.py -> build/lib.linux-x86_64-2.7/pymc/gp[0m >[39mcopying pymc/gp/Covariance.py -> build/lib.linux-x86_64-2.7/pymc/gp[0m >[39mcopying pymc/gp/BasisCovariance.py -> build/lib.linux-x86_64-2.7/pymc/gp[0m >[39mcreating build/lib.linux-x86_64-2.7/pymc/gp/cov_funs[0m >[39mcopying pymc/gp/cov_funs/wrapped_distances.py -> build/lib.linux-x86_64-2.7/pymc/gp/cov_funs[0m >[39mcopying pymc/gp/cov_funs/nsmatern.py -> build/lib.linux-x86_64-2.7/pymc/gp/cov_funs[0m >[39mcopying pymc/gp/cov_funs/cov_utils.py -> build/lib.linux-x86_64-2.7/pymc/gp/cov_funs[0m >[39mcopying pymc/gp/cov_funs/brownian.py -> build/lib.linux-x86_64-2.7/pymc/gp/cov_funs[0m >[39mcopying pymc/gp/cov_funs/bases.py -> build/lib.linux-x86_64-2.7/pymc/gp/cov_funs[0m >[39mcopying pymc/gp/cov_funs/__init__.py -> build/lib.linux-x86_64-2.7/pymc/gp/cov_funs[0m >[31mwarning: build_py: byte-compiling is disabled, skipping. >[0m >[39mrunning build_ext[0m >[39mcustomize UnixCCompiler[0m >[39mcustomize UnixCCompiler using build_ext[0m >[39mcustomize Gnu95FCompiler[0m >[32mFound executable /usr/bin/gfortran[0m >[39mcustomize Gnu95FCompiler using build_ext[0m >[39mbuilding 'pymc.flib' extension[0m >[39mcompiling C sources[0m >[39mC compiler: x86_64-pc-linux-gnu-gcc -pthread -O2 -pipe -march=core2 -fPIC >[0m >[39mcreating build/temp.linux-x86_64-2.7[0m >[39mcreating build/temp.linux-x86_64-2.7/cephes[0m >[39mcreating build/temp.linux-x86_64-2.7/build[0m >[39mcreating build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7[0m >[39mcreating build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/pymc[0m >[39mcompile options: '-DNO_ATLAS_INFO=1 -Ibuild/src.linux-x86_64-2.7 -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'[0m >[39mx86_64-pc-linux-gnu-gcc: build/src.linux-x86_64-2.7/pymc/flibmodule.c[0m >In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728:0, > from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17, > from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15, > from build/src.linux-x86_64-2.7/fortranobject.h:13, > from build/src.linux-x86_64-2.7/pymc/flibmodule.c:18: >/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] >[39mx86_64-pc-linux-gnu-gcc: cephes/chbevl.c[0m >[39mx86_64-pc-linux-gnu-gcc: build/src.linux-x86_64-2.7/fortranobject.c[0m >In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728:0, > from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17, > from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15, > from build/src.linux-x86_64-2.7/fortranobject.h:13, > from build/src.linux-x86_64-2.7/fortranobject.c:2: >/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] >[39mx86_64-pc-linux-gnu-gcc: cephes/c2f.c[0m >[39mx86_64-pc-linux-gnu-gcc: cephes/i0.c[0m >[39mcompiling Fortran sources[0m >[39mFortran f77 compiler: /usr/bin/gfortran -Wall -ffixed-form -fno-second-underscore -O2 -pipe -O3 -funroll-loops >Fortran f90 compiler: /usr/bin/gfortran -Wall -fno-second-underscore -O2 -pipe -O3 -funroll-loops >Fortran fix compiler: /usr/bin/gfortran -Wall -ffixed-form -fno-second-underscore -Wall -fno-second-underscore -O2 -pipe -O3 -funroll-loops[0m >[39mcreating build/temp.linux-x86_64-2.7/pymc[0m >[39mcompile options: '-DNO_ATLAS_INFO=1 -Ibuild/src.linux-x86_64-2.7 -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'[0m >[39mgfortran:f77: pymc/flib.f[0m >Warning: Nonconforming tab character in column 1 of line 509 >Warning: Nonconforming tab character in column 1 of line 510 >Warning: Nonconforming tab character in column 1 of line 511 >Warning: Nonconforming tab character in column 1 of line 512 >Warning: Nonconforming tab character in column 1 of line 513 >Warning: Nonconforming tab character in column 1 of line 557 >Warning: Nonconforming tab character in column 1 of line 558 >Warning: Nonconforming tab character in column 1 of line 559 >Warning: Nonconforming tab character in column 1 of line 560 >Warning: Nonconforming tab character in column 1 of line 561 >Warning: Nonconforming tab character in column 6 of line 707 >Warning: Nonconforming tab character in column 6 of line 711 >Warning: Nonconforming tab character in column 6 of line 715 >Warning: Nonconforming tab character in column 1 of line 723 >Warning: Nonconforming tab character in column 6 of line 775 >Warning: Nonconforming tab character in column 6 of line 779 >Warning: Nonconforming tab character in column 6 of line 783 >Warning: Nonconforming tab character in column 1 of line 791 >Warning: Nonconforming tab character in column 6 of line 849 >Warning: Nonconforming tab character in column 6 of line 853 >Warning: Nonconforming tab character in column 6 of line 857 >Warning: Nonconforming tab character in column 1 of line 865 >Warning: Nonconforming tab character in column 6 of line 921 >Warning: Nonconforming tab character in column 6 of line 925 >Warning: Nonconforming tab character in column 6 of line 929 >Warning: Nonconforming tab character in column 1 of line 937 >Warning: Nonconforming tab character in column 6 of line 991 >Warning: Nonconforming tab character in column 6 of line 995 >Warning: Nonconforming tab character in column 6 of line 999 >Warning: Nonconforming tab character in column 1 of line 1007 >Warning: Nonconforming tab character in column 1 of line 1195 >Warning: Nonconforming tab character in column 1 of line 1196 >Warning: Nonconforming tab character in column 1 of line 1197 >Warning: Nonconforming tab character in column 1 of line 1200 >Warning: Nonconforming tab character in column 1 of line 1201 >Warning: Nonconforming tab character in column 1 of line 1408 >Warning: Nonconforming tab character in column 1 of line 1409 >Warning: Nonconforming tab character in column 1 of line 1412 >Warning: Nonconforming tab character in column 5 of line 1420 >Warning: Nonconforming tab character in column 5 of line 1421 >Warning: Nonconforming tab character in column 5 of line 1422 >Warning: Nonconforming tab character in column 5 of line 1423 >Warning: Nonconforming tab character in column 5 of line 1424 >Warning: Nonconforming tab character in column 5 of line 1425 >Warning: Nonconforming tab character in column 1 of line 1452 >Warning: Nonconforming tab character in column 1 of line 1454 >Warning: Nonconforming tab character in column 1 of line 1457 >Warning: Nonconforming tab character in column 5 of line 1465 >Warning: Nonconforming tab character in column 5 of line 1466 >Warning: Nonconforming tab character in column 5 of line 1467 >Warning: Nonconforming tab character in column 5 of line 1469 >Warning: Nonconforming tab character in column 5 of line 1470 >Warning: Nonconforming tab character in column 5 of line 1471 >Warning: Nonconforming tab character in column 5 of line 1472 >Warning: Nonconforming tab character in column 5 of line 1473 >Warning: Nonconforming tab character in column 1 of line 1478 >Warning: Nonconforming tab character in column 1 of line 1499 >Warning: Nonconforming tab character in column 1 of line 1501 >Warning: Nonconforming tab character in column 1 of line 1504 >Warning: Nonconforming tab character in column 5 of line 1512 >Warning: Nonconforming tab character in column 5 of line 1513 >Warning: Nonconforming tab character in column 5 of line 1514 >Warning: Nonconforming tab character in column 5 of line 1515 >Warning: Nonconforming tab character in column 5 of line 1516 >Warning: Nonconforming tab character in column 5 of line 1517 >Warning: Nonconforming tab character in column 1 of line 1740 >Warning: Nonconforming tab character in column 1 of line 1743 >Warning: Nonconforming tab character in column 1 of line 1746 >Warning: Nonconforming tab character in column 1 of line 1755 >Warning: Nonconforming tab character in column 1 of line 1783 >Warning: Nonconforming tab character in column 1 of line 1786 >Warning: Nonconforming tab character in column 1 of line 1789 >Warning: Nonconforming tab character in column 1 of line 1798 >Warning: Nonconforming tab character in column 1 of line 1800 >Warning: Nonconforming tab character in column 1 of line 1832 >Warning: Nonconforming tab character in column 1 of line 1835 >Warning: Nonconforming tab character in column 1 of line 1838 >Warning: Nonconforming tab character in column 1 of line 1847 >Warning: Nonconforming tab character in column 1 of line 1849 >Warning: Nonconforming tab character in column 1 of line 1977 >Warning: Nonconforming tab character in column 1 of line 1978 >Warning: Nonconforming tab character in column 1 of line 2030 >Warning: Nonconforming tab character in column 1 of line 2031 >Warning: Nonconforming tab character in column 1 of line 2079 >Warning: Nonconforming tab character in column 1 of line 2080 >Warning: Nonconforming tab character in column 1 of line 2168 >Warning: Nonconforming tab character in column 1 of line 2174 >Warning: Nonconforming tab character in column 1 of line 2218 >Warning: Nonconforming tab character in column 1 of line 2224 >Warning: Nonconforming tab character in column 1 of line 2339 >Warning: Nonconforming tab character in column 1 of line 2395 >Warning: Nonconforming tab character in column 1 of line 2692 >Warning: Nonconforming tab character in column 1 of line 2693 >Warning: Nonconforming tab character in column 1 of line 2694 >Warning: Nonconforming tab character in column 1 of line 2696 >Warning: Nonconforming tab character in column 1 of line 2697 >Warning: Nonconforming tab character in column 1 of line 2756 >Warning: Nonconforming tab character in column 1 of line 2820 >Warning: Nonconforming tab character in column 1 of line 2881 >Warning: Nonconforming tab character in column 1 of line 3191 >Warning: Nonconforming tab character in column 1 of line 3192 >Warning: Nonconforming tab character in column 1 of line 3656 >Warning: Nonconforming tab character in column 1 of line 3657 >Warning: Nonconforming tab character in column 1 of line 3658 >Warning: Nonconforming tab character in column 1 of line 3660 >Warning: Nonconforming tab character in column 1 of line 3661 >Warning: Nonconforming tab character in column 1 of line 3662 >Warning: Nonconforming tab character in column 1 of line 3664 >Warning: Nonconforming tab character in column 1 of line 3665 >Warning: Nonconforming tab character in column 1 of line 3666 >Warning: Nonconforming tab character in column 1 of line 3716 >Warning: Nonconforming tab character in column 1 of line 3717 >Warning: Nonconforming tab character in column 1 of line 3718 >Warning: Nonconforming tab character in column 1 of line 3720 >Warning: Nonconforming tab character in column 1 of line 3721 >Warning: Nonconforming tab character in column 1 of line 3722 >Warning: Nonconforming tab character in column 1 of line 3724 >Warning: Nonconforming tab character in column 1 of line 3725 >Warning: Nonconforming tab character in column 1 of line 3726 >Warning: Nonconforming tab character in column 1 of line 3732 >Warning: Nonconforming tab character in column 1 of line 3846 >Warning: Nonconforming tab character in column 1 of line 3847 >Warning: Nonconforming tab character in column 1 of line 3849 >Warning: Nonconforming tab character in column 1 of line 3851 >Warning: Nonconforming tab character in column 1 of line 3875 >Warning: Nonconforming tab character in column 1 of line 3876 >Warning: Nonconforming tab character in column 1 of line 3877 >Warning: Nonconforming tab character in column 1 of line 3878 >Warning: Nonconforming tab character in column 1 of line 4276 >Warning: Nonconforming tab character in column 1 of line 4277 >Warning: Nonconforming tab character in column 1 of line 4278 >Warning: Nonconforming tab character in column 1 of line 4280 >Warning: Nonconforming tab character in column 1 of line 4281 >Warning: Nonconforming tab character in column 1 of line 4282 >Warning: Nonconforming tab character in column 1 of line 4284 >Warning: Nonconforming tab character in column 1 of line 4285 >Warning: Nonconforming tab character in column 1 of line 4286 >Warning: Nonconforming tab character in column 1 of line 4288 >Warning: Nonconforming tab character in column 1 of line 4289 >Warning: Nonconforming tab character in column 1 of line 4290 >Warning: Nonconforming tab character in column 1 of line 4342 >Warning: Nonconforming tab character in column 1 of line 4343 >Warning: Nonconforming tab character in column 1 of line 4344 >Warning: Nonconforming tab character in column 1 of line 4346 >Warning: Nonconforming tab character in column 1 of line 4347 >Warning: Nonconforming tab character in column 1 of line 4348 >Warning: Nonconforming tab character in column 1 of line 4350 >Warning: Nonconforming tab character in column 1 of line 4351 >Warning: Nonconforming tab character in column 1 of line 4352 >Warning: Nonconforming tab character in column 1 of line 4354 >Warning: Nonconforming tab character in column 1 of line 4355 >Warning: Nonconforming tab character in column 1 of line 4356 >Warning: Nonconforming tab character in column 1 of line 4620 >Warning: Nonconforming tab character in column 1 of line 4622 >Warning: Nonconforming tab character in column 1 of line 4623 >Warning: Nonconforming tab character in column 1 of line 4624 >Warning: Nonconforming tab character in column 1 of line 4626 >Warning: Nonconforming tab character in column 1 of line 4628 >Warning: Nonconforming tab character in column 1 of line 4630 >Warning: Nonconforming tab character in column 1 of line 4632 >Warning: Nonconforming tab character in column 1 of line 4633 >Warning: Nonconforming tab character in column 1 of line 4634 >Warning: Nonconforming tab character in column 1 of line 4635 >Warning: Nonconforming tab character in column 1 of line 4637 >Warning: Nonconforming tab character in column 1 of line 4638 >Warning: Nonconforming tab character in column 1 of line 4639 >Warning: Nonconforming tab character in column 1 of line 4640 >Warning: Nonconforming tab character in column 1 of line 4642 >Warning: Nonconforming tab character in column 1 of line 4643 >Warning: Nonconforming tab character in column 1 of line 4644 >Warning: Nonconforming tab character in column 1 of line 4645 >Warning: Nonconforming tab character in column 1 of line 4646 >pymc/flib.f:316.55: > > DOUBLE PRECISION mu_now, tau_now, alph_now, d_now, like > 1 >Warning: Unused variable 'd_now' declared at (1) >pymc/flib.f:314.42: > > INTEGER i, nx, nalph, nmu, ntau, tnx > 1 >Warning: Unused variable 'tnx' declared at (1) >pymc/flib.f:442.71: > > subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) > 1 >Warning: Unused dummy argument 'gradxlike' at (1) >pymc/flib.f:461.40: > > DOUBLE PRECISION like, low, high > 1 >Warning: Unused variable 'high' declared at (1) >pymc/flib.f:458.36: > > INTEGER n, nlower, nupper, i > 1 >Warning: Unused variable 'i' declared at (1) >pymc/flib.f:461.29: > > DOUBLE PRECISION like, low, high > 1 >Warning: Unused variable 'like' declared at (1) >pymc/flib.f:461.34: > > DOUBLE PRECISION like, low, high > 1 >Warning: Unused variable 'low' declared at (1) >pymc/flib.f:442.39: > > subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) > 1 >Warning: Unused dummy argument 'lower' at (1) >pymc/flib.f:442.45: > > subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) > 1 >Warning: Unused dummy argument 'upper' at (1) >pymc/flib.f:442.33: > > subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) > 1 >Warning: Unused dummy argument 'x' at (1) >pymc/flib.f:692.41: > > DOUBLE PRECISION aa, cc, sigma, pdf > 1 >Warning: Unused variable 'pdf' declared at (1) >pymc/flib.f:760.41: > > DOUBLE PRECISION aa, cc, sigma, pdf > 1 >Warning: Unused variable 'pdf' declared at (1) >pymc/flib.f:834.41: > > DOUBLE PRECISION aa, cc, sigma, pdf > 1 >Warning: Unused variable 'pdf' declared at (1) >pymc/flib.f:906.41: > > DOUBLE PRECISION aa, cc, sigma, pdf > 1 >Warning: Unused variable 'pdf' declared at (1) >pymc/flib.f:976.41: > > DOUBLE PRECISION aa, cc, sigma, pdf > 1 >Warning: Unused variable 'pdf' declared at (1) >pymc/flib.f:1186.29: > > DOUBLE PRECISION factln > 1 >Warning: Unused variable 'factln' declared at (1) >pymc/flib.f:1185.51: > > DOUBLE PRECISION sumx, mut, infinity, sumfact > 1 >Warning: Unused variable 'sumfact' declared at (1) >pymc/flib.f:1185.27: > > DOUBLE PRECISION sumx, mut, infinity, sumfact > 1 >Warning: Unused variable 'sumx' declared at (1) >pymc/flib.f:1300.55: > > DOUBLE PRECISION mu(nmu), gradlike(nmu),grad, cdf > 1 >Warning: Unused variable 'cdf' declared at (1) >pymc/flib.f:1302.29: > > DOUBLE PRECISION factln, gammq > 1 >Warning: Unused variable 'factln' declared at (1) >pymc/flib.f:1302.36: > > DOUBLE PRECISION factln, gammq > 1 >Warning: Unused variable 'gammq' declared at (1) >pymc/flib.f:1301.59: > > DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf > 1 >Warning: Unused variable 'sumcdf' declared at (1) >pymc/flib.f:1301.51: > > DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf > 1 >Warning: Unused variable 'sumfact' declared at (1) >pymc/flib.f:1301.27: > > DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf > 1 >Warning: Unused variable 'sumx' declared at (1) >pymc/flib.f:1402.29: > > DOUBLE PRECISION gammln > 1 >Warning: Unused variable 'gammln' declared at (1) >pymc/flib.f:2154.40: > > DOUBLE PRECISION gradlike(n), grad > 1 >Warning: Unused variable 'grad' declared at (1) >pymc/flib.f:2665.29: > > DOUBLE PRECISION gammln > 1 >Warning: Unused variable 'gammln' declared at (1) >pymc/flib.f:2728.29: > > DOUBLE PRECISION gammln, psi > 1 >Warning: Unused variable 'gammln' declared at (1) >pymc/flib.f:2793.29: > > DOUBLE PRECISION gammln > 1 >Warning: Unused variable 'gammln' declared at (1) >pymc/flib.f:2903.29: > > DOUBLE PRECISION gammln > 1 >Warning: Unused variable 'gammln' declared at (1) >pymc/flib.f:2959.29: > > DOUBLE PRECISION gammln, psi > 1 >Warning: Unused variable 'gammln' declared at (1) >pymc/flib.f:3021.29: > > DOUBLE PRECISION gammln > 1 >Warning: Unused variable 'gammln' declared at (1) >pymc/flib.f:3396.58: > > DOUBLE PRECISION gradlike(nx), atmp, btmp, PI, glike > 1 >Warning: Unused variable 'glike' declared at (1) >pymc/flib.f:3646.37: > > DOUBLE PRECISION gammln, factln > 1 >Warning: Unused variable 'factln' declared at (1) >pymc/flib.f:3646.29: > > DOUBLE PRECISION gammln, factln > 1 >Warning: Unused variable 'gammln' declared at (1) >pymc/flib.f:3706.37: > > DOUBLE PRECISION gammln, factln, psi > 1 >Warning: Unused variable 'factln' declared at (1) >pymc/flib.f:3706.29: > > DOUBLE PRECISION gammln, factln, psi > 1 >Warning: Unused variable 'gammln' declared at (1) >pymc/flib.f:3836.29: > > DOUBLE PRECISION factln > 1 >Warning: Unused variable 'factln' declared at (1) >pymc/flib.f:4039.26: > > DOUBLE PRECISION psi > 1 >Warning: Unused variable 'psi' declared at (1) >pymc/flib.f:4266.29: > > DOUBLE PRECISION gammln, psi > 1 >Warning: Unused variable 'gammln' declared at (1) >pymc/flib.f:4332.29: > > DOUBLE PRECISION gammln, psi > 1 >Warning: Unused variable 'gammln' declared at (1) >pymc/flib.f:5184.35: > > DOUBLE PRECISION like, factln, infinity, sump > 1 >Warning: Unused variable 'factln' declared at (1) >pymc/flib.f:5186.23: > > INTEGER i,j,n_tmp > 1 >Warning: Unused variable 'n_tmp' declared at (1) >pymc/flib.f:5772.26: > > DOUBLE PRECISION tmp > 1 >Warning: Unused variable 'tmp' declared at (1) >pymc/flib.f:5826.25: > > DOUBLE PRECISION i0 > 1 >Warning: Unused variable 'i0' declared at (1) >pymc/flib.f:5819.26: > > DOUBLE PRECISION tmp > 1 >Warning: Unused variable 'tmp' declared at (1) >pymc/flib.f:5873.25: > > DOUBLE PRECISION i0 > 1 >Warning: Unused variable 'i0' declared at (1) >pymc/flib.f:5866.26: > > DOUBLE PRECISION tmp > 1 >Warning: Unused variable 'tmp' declared at (1) >pymc/flib.f: In function âelgsâ: >pymc/flib.f:4882:0: warning: âkâ may be used uninitialized in this function [-Wuninitialized] >pymc/flib.f: In function âexponweib_glâ: >pymc/flib.f:778:0: warning: âncâ may be used uninitialized in this function [-Wuninitialized] >pymc/flib.f: In function âexponweib_gsâ: >pymc/flib.f:994:0: warning: âncâ may be used uninitialized in this function [-Wuninitialized] >[39mgfortran:f77: pymc/histogram.f[0m >[39mgfortran:f77: pymc/flib_blas.f[0m >pymc/flib_blas.f:372.17: > > LOGICAL csx > 1 >Warning: Unused variable 'csx' declared at (1) >[39mgfortran:f77: pymc/blas_wrap.f[0m >[39mgfortran:f77: pymc/math.f[0m >pymc/math.f:396.6: > > DOUBLE PRECISION FUNCTION DERF(X) > 1 >Warning: 'derf' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. >pymc/math.f:417.6: > > DOUBLE PRECISION FUNCTION DERFC(X) > 1 >Warning: 'derfc' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. >[39mgfortran:f77: pymc/gibbsit.f[0m >pymc/gibbsit.f:2160.5: > > 215 IF (R .GT. .5898437) GO TO 220 > 1 >Warning: Label 215 at (1) defined but not used >pymc/gibbsit.f:2077.5: > > 115 IF (R .GT. .5898437) GO TO 120 > 1 >Warning: Label 115 at (1) defined but not used >pymc/gibbsit.f:2064.5: > > 15 IF (KFLAG.GE.1) GO TO 30 > 1 >Warning: Label 15 at (1) defined but not used >pymc/gibbsit.f:1204.48: > > cutpt = empquant(original,iteracnt,qhat,work) > 1 >Warning: Type mismatch in argument 'work' at (1); passed INTEGER(4) to REAL(8) >[39mgfortran:f77: build/src.linux-x86_64-2.7/pymc/flib-f2pywrappers.f[0m >[39m/usr/bin/gfortran -Wall -Wl,-O1 -Wl,--as-needed build/temp.linux-x86_64-2.7/cephes/i0.o build/temp.linux-x86_64-2.7/cephes/c2f.o build/temp.linux-x86_64-2.7/cephes/chbevl.o build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/pymc/flibmodule.o build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/fortranobject.o build/temp.linux-x86_64-2.7/pymc/flib.o build/temp.linux-x86_64-2.7/pymc/histogram.o build/temp.linux-x86_64-2.7/pymc/flib_blas.o build/temp.linux-x86_64-2.7/pymc/blas_wrap.o build/temp.linux-x86_64-2.7/pymc/math.o build/temp.linux-x86_64-2.7/pymc/gibbsit.o build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/pymc/flib-f2pywrappers.o -L/usr/lib64 -L/usr/lib64 -llapack -lblas -lcblas -lblas -lpython2.7 -lgfortran -o build/lib.linux-x86_64-2.7/pymc/flib.so[0m >[39mbuilding 'pymc.LazyFunction' extension[0m >[39mcompiling C sources[0m >[39mC compiler: x86_64-pc-linux-gnu-gcc -pthread -O2 -pipe -march=core2 -fPIC >[0m >[39mcompile options: '-I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'[0m >[39mx86_64-pc-linux-gnu-gcc: pymc/LazyFunction.c[0m >In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728:0, > from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17, > from pymc/LazyFunction.c:224: >/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] >[39mx86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,--as-needed -L. -Wl,-O1 -Wl,--as-needed -O2 -pipe -march=core2 build/temp.linux-x86_64-2.7/pymc/LazyFunction.o -L/usr/lib64 -lpython2.7 -o build/lib.linux-x86_64-2.7/pymc/LazyFunction.so[0m >[39mbuilding 'pymc.Container_values' extension[0m >[39mcompiling C sources[0m >[39mC compiler: x86_64-pc-linux-gnu-gcc -pthread -O2 -pipe -march=core2 -fPIC >[0m >[39mcompile options: '-I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'[0m >[39mx86_64-pc-linux-gnu-gcc: pymc/Container_values.c[0m >In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728:0, > from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17, > from pymc/Container_values.c:223: >/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] >[39mx86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,--as-needed -L. -Wl,-O1 -Wl,--as-needed -O2 -pipe -march=core2 build/temp.linux-x86_64-2.7/pymc/Container_values.o -L/usr/lib64 -lpython2.7 -o build/lib.linux-x86_64-2.7/pymc/Container_values.so[0m >[39mbuilding 'pymc.gp.linalg_utils' extension[0m >[39mcompiling C sources[0m >[39mC compiler: x86_64-pc-linux-gnu-gcc -pthread -O2 -pipe -march=core2 -fPIC >[0m >[39mcreating build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/pymc/gp[0m >[39mcompile options: '-DNO_ATLAS_INFO=1 -Ibuild/src.linux-x86_64-2.7 -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'[0m >[39mx86_64-pc-linux-gnu-gcc: build/src.linux-x86_64-2.7/fortranobject.c[0m >In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728:0, > from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17, > from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15, > from build/src.linux-x86_64-2.7/fortranobject.h:13, > from build/src.linux-x86_64-2.7/fortranobject.c:2: >/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] >[39mx86_64-pc-linux-gnu-gcc: build/src.linux-x86_64-2.7/pymc/gp/linalg_utilsmodule.c[0m >In file included from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1728:0, > from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17, > from /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:15, > from build/src.linux-x86_64-2.7/fortranobject.h:13, > from build/src.linux-x86_64-2.7/pymc/gp/linalg_utilsmodule.c:18: >/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/npy_deprecated_api.h:11:2: warning: #warning "Using deprecated NumPy API, disable it by #defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] >[39mcompiling Fortran sources[0m >[39mFortran f77 compiler: /usr/bin/gfortran -Wall -ffixed-form -fno-second-underscore -O2 -pipe -O3 -funroll-loops >Fortran f90 compiler: /usr/bin/gfortran -Wall -fno-second-underscore -O2 -pipe -O3 -funroll-loops >Fortran fix compiler: /usr/bin/gfortran -Wall -ffixed-form -fno-second-underscore -Wall -fno-second-underscore -O2 -pipe -O3 -funroll-loops[0m >[39mcreating build/temp.linux-x86_64-2.7/pymc/gp[0m >[39mcompile options: '-DNO_ATLAS_INFO=1 -Ibuild/src.linux-x86_64-2.7 -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include/python2.7 -c'[0m >[39mgfortran:f77: pymc/gp/linalg_utils.f[0m >pymc/gp/linalg_utils.f:151.56: > > SUBROUTINE gp_array_logp(x, mu, sig, n, like, info) > 1 >Warning: Unused dummy argument 'info' at (1) >[39mgfortran:f77: pymc/blas_wrap.f[0m >[39m/usr/bin/gfortran -Wall -Wl,-O1 -Wl,--as-needed build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/pymc/gp/linalg_utilsmodule.o build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/fortranobject.o build/temp.linux-x86_64-2.7/pymc/gp/linalg_utils.o build/temp.linux-x86_64-2.7/pymc/blas_wrap.o -L/usr/lib64 -L/usr/lib64 -llapack -lblas -lcblas -lblas -lpython2.7 -lgfortran -o build/lib.linux-x86_64-2.7/pymc/gp/linalg_utils.so[0m >/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../../../lib64/crt1.o: In function `_start': >(.text+0x20): undefined reference to `main' >collect2: ld returned 1 exit status >/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../../../lib64/crt1.o: In function `_start': >(.text+0x20): undefined reference to `main' >collect2: ld returned 1 exit status >error: Command "/usr/bin/gfortran -Wall -Wl,-O1 -Wl,--as-needed build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/pymc/gp/linalg_utilsmodule.o build/temp.linux-x86_64-2.7/build/src.linux-x86_64-2.7/fortranobject.o build/temp.linux-x86_64-2.7/pymc/gp/linalg_utils.o build/temp.linux-x86_64-2.7/pymc/blas_wrap.o -L/usr/lib64 -L/usr/lib64 -llapack -lblas -lcblas -lblas -lpython2.7 -lgfortran -o build/lib.linux-x86_64-2.7/pymc/gp/linalg_utils.so" failed with exit status 1 > * ERROR: sci-mathematics/pymc-2.2 failed (compile phase): > * Building failed > * > * Call stack: > * ebuild.sh, line 93: Called src_compile > * environment, line 3668: Called distutils_src_compile '--fcompiler=gnu95' > * environment, line 1015: Called die > * The specific snippet of code: > * "$(PYTHON)" "${setup_file#*|}" "${_DISTUTILS_GLOBAL_OPTIONS[@]}" build "$@" || die "Building failed"; > * > * If you need support, post the output of `emerge --info '=sci-mathematics/pymc-2.2'`, > * the complete build log and the output of `emerge -pqv '=sci-mathematics/pymc-2.2'`. > * The complete build log is located at '/tmp/portage/sci-mathematics/pymc-2.2/temp/build.log'. > * The ebuild environment file is located at '/tmp/portage/sci-mathematics/pymc-2.2/temp/environment'. > * Working directory: '/tmp/portage/sci-mathematics/pymc-2.2/work/pymc-2.2' > * S: '/tmp/portage/sci-mathematics/pymc-2.2/work/pymc-2.2'
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