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Gentoo's Bugzilla – Attachment 350956 Details for
Bug 473294
sci-libs/arpack hangs during configure: checking for MPI_Init...
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build.log
file_473294.txt (text/plain), 8.02 KB, created by
Manuel Rüger (RETIRED)
on 2013-06-14 17:52:59 UTC
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Description:
build.log
Filename:
MIME Type:
Creator:
Manuel Rüger (RETIRED)
Created:
2013-06-14 17:52:59 UTC
Size:
8.02 KB
patch
obsolete
> * Package: sci-libs/arpack-0.96-r3 > * Repository: gentoo > * Maintainer: sci@gentoo.org > * USE: abi_x86_64 amd64 consolekit elibc_glibc kernel_linux mpi multilib policykit userland_GNU > * FEATURES: preserve-libs sandbox > * Using following Fortran compiler: > * F77: x86_64-pc-linux-gnu-gfortran > * FC: x86_64-pc-linux-gnu-gfortran >>>> Unpacking source... >>>> Unpacking arpack96.tar.gz to /var/tmp/portage/sci-libs/arpack-0.96-r3/work >>>> Unpacking parpack96.tar.gz to /var/tmp/portage/sci-libs/arpack-0.96-r3/work >>>> Unpacking arpack-96-patches-2.tar.bz2 to /var/tmp/portage/sci-libs/arpack-0.96-r3/work >>>> Unpacking ./patch.tar.gz to /var/tmp/portage/sci-libs/arpack-0.96-r3/work >>>> Unpacking ./ppatch.tar.gz to /var/tmp/portage/sci-libs/arpack-0.96-r3/work >>>> Source unpacked in /var/tmp/portage/sci-libs/arpack-0.96-r3/work >>>> Preparing source in /var/tmp/portage/sci-libs/arpack-0.96-r3/work/ARPACK ... > * Applying arpack-arscnd.patch ... > [ ok ] > * Applying arpack-neupd.patch ... > [ ok ] > * Applying arpack-autotools.patch ... > [ ok ] > * Running eautoreconf in '/var/tmp/portage/sci-libs/arpack-0.96-r3/work/ARPACK' ... > * Running libtoolize --install --copy --force --automake ... > [ ok ] > * Running aclocal ... > [ ok ] > * Running autoconf ... > [ ok ] > * Running automake --add-missing --copy --foreign ... > [ ok ] > * Running elibtoolize in: ARPACK/ > * Applying portage/1.2.0 patch ... > * Applying sed/1.5.6 patch ... > * Applying as-needed/2.2.6 patch ... > * Applying target-nm/2.4.2 patch ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-libs/arpack-0.96-r3/work/ARPACK ... > * econf: updating ARPACK/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating ARPACK/config.guess with /usr/share/gnuconfig/config.guess >./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 --disable-dependency-tracking --with-blas=-lblas --with-lapack=-llapack -lblas --disable-static --enable-mpi >configure: loading site script /usr/share/config.site >checking for a BSD-compatible install... /usr/bin/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking for x86_64-pc-linux-gnu-g77... x86_64-pc-linux-gnu-gfortran >checking whether the Fortran 77 compiler works... yes >checking for Fortran 77 compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU Fortran 77 compiler... yes >checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking how to print strings... printf >checking for style of include used by make... GNU >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking dependency style of x86_64-pc-linux-gnu-gcc... none >checking for a sed that does not truncate output... /bin/sed >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-pc-linux-gnu-nm -B >checking the name lister (/usr/bin/x86_64-pc-linux-gnu-nm -B) interface... BSD nm >checking whether ln -s works... yes >checking the maximum length of command line arguments... 1572864 >checking whether the shell understands some XSI constructs... yes >checking whether the shell understands "+="... yes >checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop >checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop >checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r >checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-dlltool... no >checking for dlltool... no >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar >checking for archiver @FILE support... @ >checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm -B output from x86_64-pc-linux-gnu-gcc object... ok >checking for sysroot... no >checking for x86_64-pc-linux-gnu-mt... no >checking for mt... no >checking if : is a manifest tool... no >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC >checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes >checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes >checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... (cached) GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking how to get verbose linking output from x86_64-pc-linux-gnu-gfortran... -v >checking for Fortran 77 libraries of x86_64-pc-linux-gnu-gfortran... -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.7.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.7.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.7.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.7.3/../../.. -lgfortran -lm -lquadmath >checking for dummy main to link with Fortran 77 libraries... none >checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore >checking for sgemm_ in -lblas ... yes >checking for cheev_ in -llapack -lblas ... yes >checking for MPI mode... checking for mpif77... mpif77 >checking for MPI_Init...
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bug 473294
: 350956