build.log

cctbx-2013.02.27.0005:20130605-164818.log (text/x-log), 417.86 KB, created by Justin Lecher (RETIRED) on 2013-06-05 17:01:36 UTC

[32;01m * [39;49;00mPackage:    sci-libs/cctbx-2013.02.27.0005
[32;01m * [39;49;00mRepository: science
[32;01m * [39;49;00mMaintainer: [e-mail] [e-mail]
[32;01m * [39;49;00mUSE:        amd64 elibc_glibc kernel_linux minimal python_single_target_python2_7 python_targets_python2_6 python_targets_python2_7 userland_GNU
[32;01m * [39;49;00mFEATURES:   ccache compressdebug preserve-libs sandbox splitdebug userpriv usersandbox
>>> Unpacking source...
>>> Unpacking cctbx-2013.02.27.0005.tar.gz to /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work
>>> Source unpacked in /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work
>>> Preparing source in /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work ...
 [32;01m*[0m Applying 0001-remove-hardcoded-libtbx_build-env.patch ...
[A[151C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying 0002-fix-opengl-header-missing-gltbx.patch ...
[A[151C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying 0003-correct-paths-in-dispatcher-creation.patch ...
[A[151C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying 0006-options-for-system-libs-installtarget-and-prefix.patch ...
[A[151C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying 0007-adding-shlib-versioning.patch ...
[A[151C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying 0008-Fix-to-skip-pycbf-build.patch ...
[A[151C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying 0009-build-libann-statically.patch ...
[A[151C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying 0010-adding-setup_py.patch ...
[A[151C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying 0011-fix-missing-python-lib-during-linking.patch ...
[A[151C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying 0012-fix-to-remove-cctbx.python-interpreter.patch ...
[A[151C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying 0013-fix-to-support-LDFLAGS-in-use_enviroment_flags.patch ...
[A[151C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying 0014-Fix-to-append-CPPFLAGS-to-CXXFLAGS.patch ...
[A[151C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying 0016-autogenerate-pkgconfig-files.patch ...
[A[151C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying 0017-Fix-to-use-systems-include-path.patch ...
[A[151C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying 0018-Fix-to-skip-build-of-clipper-examples.patch ...
[A[151C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying 0101-system-cbf.patch ...
[A[151C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying 0101-system-clipper.patch ...
[A[151C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying 0101-system-libccp4.patch ...
[A[151C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying 0102-dontstrip.patch ...
[A[151C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying 0103-respect-cflags.patch ...
[A[151C [34;01m[ [32;01mok[34;01m ][0m
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work ...
/usr/bin/python2.7 setup.py build --build-base /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7 --build-platlib /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/lib --build-purelib /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/lib --build-scripts /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/scripts
running build
running build_py
copying with modification cctbx_sources/stdlib.py -> /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/lib/stdlib.py
copying with modification cctbx_sources/tntbx/tntbx/__init__.py -> /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/lib/tntbx/__init__.py
copying with modification cctbx_sources/tntbx/tntbx/eigensystem.py -> /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/lib/tntbx/eigensystem.py
copying with modification cctbx_sources/annlib_adaptbx/libtbx_refresh.py -> /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/lib/annlib_adaptbx/libtbx_refresh.py
copying with modification cctbx_sources/annlib_adaptbx/run_tests.py -> /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/lib/annlib_adaptbx/run_tests.py
copying with modification cctbx_sources/boost_adaptbx/libtbx_refresh.py -> /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/lib/boost_adaptbx/libtbx_refresh.py
copying with modification cctbx_sources/ccp4io_adaptbx/tst.py -> /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/lib/ccp4io_adaptbx/tst.py
copying with modification cctbx_sources/ccp4io_adaptbx/copy_files.py -> /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/lib/ccp4io_adaptbx/copy_files.py
copying with modification cctbx_sources/ccp4io_adaptbx/__init__.py -> /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/lib/ccp4io_adaptbx/__init__.py
copying cctbx_sources/cbflib_adaptbx/libtbx_refresh.py -> /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/lib/cbflib_adaptbx
copying cctbx_sources/libtbx/env_config.py -> /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/lib/libtbx
copying with modification cctbx_sources/libtbx/try_hello_world_c.py -> /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/lib/libtbx/try_hello_world_c.py
copying with modification cctbx_sources/libtbx/str_utils.py -> /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/lib/libtbx/str_utils.py
copying with modification cctbx_sources/libtbx/subprocess_with_fixes.py -> /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/lib/libtbx/subprocess_with_fixes.py
copying with modification cctbx_sources/annlib_adaptbx/annlib_adaptbx/self_match.py -> /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/lib/annlib_adaptbx/annlib_adaptbx/self_match.py
copying with modification cctbx_sources/annlib_adaptbx/annlib_adaptbx/sample.py -> /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/lib/annlib_adaptbx/annlib_adaptbx/sample.py
copying with modification cctbx_sources/annlib_adaptbx/source_generators/generate_all.py -> /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/lib/annlib_adaptbx/source_generators/generate_all.py
copying with modification cctbx_sources/smtbx/ab_initio/charge_flipping.py -> /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/lib/smtbx/ab_initio/charge_flipping.py
copying cctbx_sources/rstbx/bpcx/uc1_2.py -> /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/lib/rstbx/bpcx
copying with modification cctbx_sources/libtbx/command_line/scons.py -> /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/lib/libtbx/command_line/scons.py
copying with modification cctbx_sources/xfel/cxi/cspad_ana/cspad_tbx.py -> /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/lib/xfel/cxi/cspad_ana/cspad_tbx.py
copying with modification cctbx_sources/mptbx/data/tables/grd_0_05.py -> /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/lib/mptbx/data/tables/grd_0_05.py
copying with modification cctbx_sources/libtbx/queuing_system_utils/processing/transfer.py -> /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/lib/libtbx/queuing_system_utils/processing/transfer.py
warning: build_py: byte-compiling is disabled, skipping.

running build_ext
Python: 2.7.5 "/usr/bin/python2.7"
Compiler: default
Build mode: release
Warning level: 0
Precompiled Headers: False
Static libraries: False
Static exe: False
Scan Boost headers: False
Write full flex_fwd.h files: False
Build Boost.Python extensions: True
Define BOOST_PYTHON_NO_PY_SIGNATURES: False
Define BOOST_PYTHON_BOOL_INT_STRICT: True
Enable OpenMP if possible: False
Enable CUDA: False
Libtoolize: True
Use System Libraries: True
Install Prefix: /usr
Libdir: lib64
Install Destdir: 
Use opt_resources if available: False
Use environment flags: True
  CXXFLAGS =  -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare
  CFLAGS =  -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration
  CPPFLAGS =  
  LDFLAGS =  -Wl,-O1 -Wl,--as-needed -Wl,-O1 -Wl,--hash-style=gnu -Wl,--sort-common
command_version_suffix: None
Relocatable paths anchored at: /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build
Top-down list of all modules involved:
  clipper+adaptbx  "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/clipper"
                   "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/clipper_adaptbx"
  crys3d           "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/crys3d"
  fftw3tbx         "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/fftw3tbx"
  gltbx            "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/gltbx"
  mmtbx            "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/mmtbx"
  rstbx            "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/rstbx"
  smtbx            "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/smtbx"
  spotfinder       "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/spotfinder"
  annlib+adaptbx   "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/annlib"
                   "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/annlib_adaptbx"
  iotbx            "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/iotbx"
  cbflib+adaptbx   "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cbflib"
                   "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cbflib_adaptbx"
  ccp4io+adaptbx   "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/ccp4io"
                   "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/ccp4io_adaptbx"
  cctbx            "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx"
  chiltbx          "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/chiltbx"
  tntbx            "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/tntbx"
  scitbx           "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx"
  fable            "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/fable"
  omptbx           "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/omptbx"
  boost+adaptbx    "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/boost"
                   "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/boost_adaptbx"
  tbxx             "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/tbxx"
  ucif             "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/ucif"
  wxtbx            "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/wxtbx"
  libtbx           "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/libtbx"
Creating files in build directory: "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build"
    dispatcher_include_template.sh
    dispatcher_head.sh
    setpaths.sh
    setpaths.csh
    setpaths_all.sh
    setpaths_all.csh
    setpaths_debug.sh
    unsetpaths.sh
    setpaths_debug.csh
    unsetpaths.csh
    SConstruct
    Makefile
    run_tests.csh
Processing: "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/libtbx/command_line"
Processing: "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/wxtbx/command_line"
Processing: "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/boost_adaptbx/command_line"
Processing: "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/fable/command_line"
Processing: "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/command_line"
Processing: "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/command_line"
Processing: "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cbflib_adaptbx/command_line"
Processing: "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/iotbx/command_line"
Processing: "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/spotfinder/command_line"
Processing: "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/smtbx/command_line"
Processing: "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/rstbx/command_line"
Processing: "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/mmtbx/command_line"
Processing: "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/gltbx/command_line"
Processing: "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/fftw3tbx/command_line"
Processing: "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/crys3d/command_line"
Processing: "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/boost_adaptbx/libtbx_refresh.py"
Processing: "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/libtbx_refresh.py"
  Generating C++ header files in:
    "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include/scitbx/array_family"
  Generating C++ files in:
    "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include/scitbx/array_family/boost_python"
  Using fable to convert scitbx/lbfgs.f
Processing: "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/libtbx_refresh.py"
  Generating C++ files in:
    "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/cctbx/eltbx"
  Generating C++ files in:
    "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include/cctbx/boost_python"
Processing: "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cbflib_adaptbx/libtbx_refresh.py"
Processing: "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/iotbx/libtbx_refresh.py"
  Using fable to convert iotbx/pdb/hybrid_36_f.f
    Writing: iotbx/pdb/hybrid_36_fem.cpp
Processing: "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/annlib_adaptbx/libtbx_refresh.py"
  Generating C++ files for self-inclusive approximate nearest neighbor
Processing: "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/smtbx/libtbx_refresh.py"
  Generating C++ files in:
    "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include/smtbx/boost_python"
Processing: "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/mmtbx/libtbx_refresh.py"
Processing: "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/gltbx/libtbx_refresh.py"
  Generating C++ files in:
    "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/gltbx"
      Info: Re-using existing font cpp files.
      Hint: Remove gltbx/FONTS_UCS_DONE_FLAG_FILE
            to force generation of new font files.
Processing: "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/fftw3tbx/libtbx_refresh.py"
Processing: "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/crys3d/libtbx_refresh.py"
  Processing *.ui files in "/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/crys3d/qttbx"
/usr/bin/python2.7 /usr/bin/scons
scons: Reading SConscript files ...
libtbx.scons: using flags from initial environment: 
              CXXFLAGS =  -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare
              CFLAGS =  -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration
              CPPFLAGS =  
              LDFLAGS =  -Wl,-O1 -Wl,--as-needed -Wl,-O1 -Wl,--hash-style=gnu -Wl,--sort-common
libtbx.scons: OpenMP is disabled.
Checking for C library boost_python-py27... (cached) no
Could not find boost_python-py27 library!
Checking for C library boost_python-2.7... (cached) yes
Checking for C library boost_python-2.7... (cached) yes
Checking for C library boost_thread... (cached) yes
BOOST_VERSION: -1
Checking for C library boost_python-2.7... (cached) yes
Checking for C library ccp4c... (cached) yes
Checking for C library mmdb... (cached) yes
Checking for C library cbf... (cached) yes
Checking for C library cbf... (cached) yes
Checking for C library antlr3c... (cached) yes
Checking for C library gl2ps... (cached) yes
Checking for C library gl2ps... (cached) yes
Checking for C library clipper-core... (cached) yes
Checking for C library clipper-contrib... (cached) yes
scons: done reading SConscript files.
scons: Building targets ...
g++ -o cbflib_adaptbx/detectors/boost_python/cbflib_ext.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cbflib -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cbflib/examples -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cbflib_adaptbx/detectors/boost_python/cbflib_ext.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cbflib_adaptbx/detectors/buffer_based_service.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cbflib -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cbflib/examples /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cbflib_adaptbx/detectors/buffer_based_service.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cbflib_adaptbx/detectors/cbf_adaptor.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cbflib -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cbflib/examples /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cbflib_adaptbx/detectors/cbf_adaptor.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cbflib_adaptbx/detectors/cbf_byte_offset_optimized.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cbflib -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cbflib/examples /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cbflib_adaptbx/detectors/cbf_byte_offset_optimized.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cbflib_adaptbx/detectors/mar_adaptor.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cbflib -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cbflib/examples /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cbflib_adaptbx/detectors/mar_adaptor.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cbflib_adaptbx/detectors/tst_memory.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cbflib -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cbflib/examples /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cbflib_adaptbx/detectors/tst_memory.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o ccp4io/lib/ssm/ss_csia.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/ccp4io/lib/ssm/ss_csia.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o ccp4io/lib/ssm/ss_graph.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/ccp4io/lib/ssm/ss_graph.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o ccp4io/lib/ssm/ss_vxedge.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/ccp4io/lib/ssm/ss_vxedge.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o ccp4io/lib/ssm/ssm_align.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/ccp4io/lib/ssm/ssm_align.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o ccp4io/lib/ssm/ssm_superpose.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/ccp4io/lib/ssm/ssm_superpose.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o ccp4io_adaptbx/ext.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/ccp4io/lib/ssm -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/ccp4io_adaptbx/ext.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/adp_restraints/adp_restraints_bpl.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/adp_restraints/adp_restraints_bpl.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/adp_restraints/adp_restraints_ext.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/adp_restraints/adp_restraints_ext.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/adp_restraints/adp_similarity_bpl.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/adp_restraints/adp_similarity_bpl.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/adp_restraints/aniso_restraints_bpl.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/adp_restraints/aniso_restraints_bpl.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/adp_restraints/fixed_u_eq_adp_bpl.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/adp_restraints/fixed_u_eq_adp_bpl.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/adp_restraints/isotropic_adp_bpl.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/adp_restraints/isotropic_adp_bpl.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/adp_restraints/rigid_bond_bpl.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/adp_restraints/rigid_bond_bpl.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/adptbx/boost_python/adptbx_ext.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/adptbx/boost_python/adptbx_ext.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/adptbx/boost_python/hirshfeld.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/adptbx/boost_python/hirshfeld.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/array_family/boost_python/flex_ext.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/array_family/boost_python/flex_ext.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/array_family/boost_python/flex_hendrickson_lattman.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/array_family/boost_python/flex_hendrickson_lattman.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/array_family/boost_python/flex_miller_index.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/array_family/boost_python/flex_miller_index.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/array_family/boost_python/flex_xray_scatterer.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/array_family/boost_python/flex_xray_scatterer.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/boost_python/emma_ext.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/boost_python/emma_ext.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/boost_python/orientation_ext.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/boost_python/orientation_ext.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/boost_python/statistics_ext.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/boost_python/statistics_ext.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/covariance/boost_python/covariance_ext.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/covariance/boost_python/covariance_ext.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/crystal/asu_clusters_bpl.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/crystal/asu_clusters_bpl.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/crystal/close_packing_bpl.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/crystal/close_packing_bpl.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/crystal/coordination_sequences_bpl.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/crystal/coordination_sequences_bpl.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/crystal/crystal_ext.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/crystal/crystal_ext.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/crystal/direct_space_asu_bpl.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/crystal/direct_space_asu_bpl.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/crystal/incremental_pairs_bpl.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/crystal/incremental_pairs_bpl.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/crystal/neighbors_bpl.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/crystal/neighbors_bpl.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/crystal/pair_tables_bpl.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/crystal/pair_tables_bpl.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/crystal/site_cluster_analysis_bpl.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/crystal/site_cluster_analysis_bpl.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/crystal/symmetry_bpl.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/crystal/symmetry_bpl.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/dmtbx/boost_python/dmtbx_ext.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/dmtbx/boost_python/dmtbx_ext.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/dmtbx/boost_python/triplet_generator.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/dmtbx/boost_python/triplet_generator.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/dmtbx/boost_python/triplet_phase_relation.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/dmtbx/boost_python/triplet_phase_relation.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
libtool --mode=compile --tag=CXX g++ -o cctbx/eltbx/basic.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/basic.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/basic.cpp  -fPIC -DPIC -o cctbx/eltbx/.libs/basic.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/basic.cpp -o cctbx/eltbx/basic.o >/dev/null 2>&1
g++ -o cctbx/eltbx/boost_python/chemical_elements_ext.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/boost_python/chemical_elements_ext.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/eltbx/boost_python/covalent_radii_ext.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/boost_python/covalent_radii_ext.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/eltbx/boost_python/fp_fdp_ext.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/boost_python/fp_fdp_ext.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/eltbx/boost_python/henke_ext.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/boost_python/henke_ext.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/eltbx/boost_python/icsd_radii_ext.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/boost_python/icsd_radii_ext.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/eltbx/boost_python/neutron_ext.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/boost_python/neutron_ext.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/eltbx/boost_python/sasaki_ext.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/boost_python/sasaki_ext.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/eltbx/boost_python/tiny_pse_ext.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/boost_python/tiny_pse_ext.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/eltbx/boost_python/wavelengths_ext.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/boost_python/wavelengths_ext.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/eltbx/boost_python/xray_scattering_ext.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/boost_python/xray_scattering_ext.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
libtool --mode=compile --tag=CXX g++ -o cctbx/eltbx/covalent_radii.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/covalent_radii.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/covalent_radii.cpp  -fPIC -DPIC -o cctbx/eltbx/.libs/covalent_radii.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/covalent_radii.cpp -o cctbx/eltbx/covalent_radii.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/eltbx/electron_scattering/peng1996.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/electron_scattering/peng1996.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/electron_scattering/peng1996.cpp  -fPIC -DPIC -o cctbx/eltbx/electron_scattering/.libs/peng1996.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/electron_scattering/peng1996.cpp -o cctbx/eltbx/electron_scattering/peng1996.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/eltbx/fp_fdp.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/fp_fdp.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/fp_fdp.cpp  -fPIC -DPIC -o cctbx/eltbx/.libs/fp_fdp.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/fp_fdp.cpp -o cctbx/eltbx/fp_fdp.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/eltbx/henke.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/henke.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/henke.cpp  -fPIC -DPIC -o cctbx/eltbx/.libs/henke.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/henke.cpp -o cctbx/eltbx/henke.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/eltbx/henke_tables_01_12.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/henke_tables_01_12.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/henke_tables_01_12.cpp  -fPIC -DPIC -o cctbx/eltbx/.libs/henke_tables_01_12.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/henke_tables_01_12.cpp -o cctbx/eltbx/henke_tables_01_12.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/eltbx/henke_tables_13_24.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/henke_tables_13_24.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/henke_tables_13_24.cpp  -fPIC -DPIC -o cctbx/eltbx/.libs/henke_tables_13_24.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/henke_tables_13_24.cpp -o cctbx/eltbx/henke_tables_13_24.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/eltbx/henke_tables_25_36.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/henke_tables_25_36.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/henke_tables_25_36.cpp  -fPIC -DPIC -o cctbx/eltbx/.libs/henke_tables_25_36.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/henke_tables_25_36.cpp -o cctbx/eltbx/henke_tables_25_36.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/eltbx/henke_tables_37_48.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/henke_tables_37_48.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/henke_tables_37_48.cpp  -fPIC -DPIC -o cctbx/eltbx/.libs/henke_tables_37_48.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/henke_tables_37_48.cpp -o cctbx/eltbx/henke_tables_37_48.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/eltbx/henke_tables_49_60.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/henke_tables_49_60.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/henke_tables_49_60.cpp  -fPIC -DPIC -o cctbx/eltbx/.libs/henke_tables_49_60.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/henke_tables_49_60.cpp -o cctbx/eltbx/henke_tables_49_60.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/eltbx/henke_tables_61_72.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/henke_tables_61_72.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/henke_tables_61_72.cpp  -fPIC -DPIC -o cctbx/eltbx/.libs/henke_tables_61_72.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/henke_tables_61_72.cpp -o cctbx/eltbx/henke_tables_61_72.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/eltbx/henke_tables_73_84.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/henke_tables_73_84.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/henke_tables_73_84.cpp  -fPIC -DPIC -o cctbx/eltbx/.libs/henke_tables_73_84.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/henke_tables_73_84.cpp -o cctbx/eltbx/henke_tables_73_84.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/eltbx/henke_tables_85_92.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/henke_tables_85_92.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/henke_tables_85_92.cpp  -fPIC -DPIC -o cctbx/eltbx/.libs/henke_tables_85_92.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/henke_tables_85_92.cpp -o cctbx/eltbx/henke_tables_85_92.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/eltbx/icsd_radii.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/icsd_radii.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/icsd_radii.cpp  -fPIC -DPIC -o cctbx/eltbx/.libs/icsd_radii.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/icsd_radii.cpp -o cctbx/eltbx/icsd_radii.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/eltbx/neutron.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/neutron.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/neutron.cpp  -fPIC -DPIC -o cctbx/eltbx/.libs/neutron.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/neutron.cpp -o cctbx/eltbx/neutron.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/eltbx/sasaki.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/sasaki.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/sasaki.cpp  -fPIC -DPIC -o cctbx/eltbx/.libs/sasaki.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/sasaki.cpp -o cctbx/eltbx/sasaki.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/eltbx/sasaki_tables_01_12.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/sasaki_tables_01_12.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/sasaki_tables_01_12.cpp  -fPIC -DPIC -o cctbx/eltbx/.libs/sasaki_tables_01_12.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/sasaki_tables_01_12.cpp -o cctbx/eltbx/sasaki_tables_01_12.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/eltbx/sasaki_tables_13_24.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/sasaki_tables_13_24.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/sasaki_tables_13_24.cpp  -fPIC -DPIC -o cctbx/eltbx/.libs/sasaki_tables_13_24.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/sasaki_tables_13_24.cpp -o cctbx/eltbx/sasaki_tables_13_24.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/eltbx/sasaki_tables_25_36.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/sasaki_tables_25_36.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/sasaki_tables_25_36.cpp  -fPIC -DPIC -o cctbx/eltbx/.libs/sasaki_tables_25_36.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/sasaki_tables_25_36.cpp -o cctbx/eltbx/sasaki_tables_25_36.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/eltbx/sasaki_tables_37_48.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/sasaki_tables_37_48.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/sasaki_tables_37_48.cpp  -fPIC -DPIC -o cctbx/eltbx/.libs/sasaki_tables_37_48.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/sasaki_tables_37_48.cpp -o cctbx/eltbx/sasaki_tables_37_48.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/eltbx/sasaki_tables_49_60.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/sasaki_tables_49_60.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/sasaki_tables_49_60.cpp  -fPIC -DPIC -o cctbx/eltbx/.libs/sasaki_tables_49_60.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/sasaki_tables_49_60.cpp -o cctbx/eltbx/sasaki_tables_49_60.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/eltbx/sasaki_tables_61_72.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/sasaki_tables_61_72.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/sasaki_tables_61_72.cpp  -fPIC -DPIC -o cctbx/eltbx/.libs/sasaki_tables_61_72.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/sasaki_tables_61_72.cpp -o cctbx/eltbx/sasaki_tables_61_72.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/eltbx/sasaki_tables_73_82.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/sasaki_tables_73_82.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/sasaki_tables_73_82.cpp  -fPIC -DPIC -o cctbx/eltbx/.libs/sasaki_tables_73_82.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources cctbx/eltbx/sasaki_tables_73_82.cpp -o cctbx/eltbx/sasaki_tables_73_82.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/eltbx/tiny_pse.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/tiny_pse.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/tiny_pse.cpp  -fPIC -DPIC -o cctbx/eltbx/.libs/tiny_pse.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/tiny_pse.cpp -o cctbx/eltbx/tiny_pse.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/eltbx/wavelengths.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/wavelengths.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/wavelengths.cpp  -fPIC -DPIC -o cctbx/eltbx/.libs/wavelengths.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/wavelengths.cpp -o cctbx/eltbx/wavelengths.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/eltbx/xray_scattering/it1992.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/xray_scattering/it1992.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/xray_scattering/it1992.cpp  -fPIC -DPIC -o cctbx/eltbx/xray_scattering/.libs/it1992.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/xray_scattering/it1992.cpp -o cctbx/eltbx/xray_scattering/it1992.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/eltbx/xray_scattering/n_gaussian.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/xray_scattering/n_gaussian.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/xray_scattering/n_gaussian.cpp  -fPIC -DPIC -o cctbx/eltbx/xray_scattering/.libs/n_gaussian.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/xray_scattering/n_gaussian.cpp -o cctbx/eltbx/xray_scattering/n_gaussian.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/eltbx/xray_scattering/n_gaussian_raw.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/xray_scattering/n_gaussian_raw.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/xray_scattering/n_gaussian_raw.cpp  -fPIC -DPIC -o cctbx/eltbx/xray_scattering/.libs/n_gaussian_raw.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/xray_scattering/n_gaussian_raw.cpp -o cctbx/eltbx/xray_scattering/n_gaussian_raw.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/eltbx/xray_scattering/wk1995.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/xray_scattering/wk1995.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/xray_scattering/wk1995.cpp  -fPIC -DPIC -o cctbx/eltbx/xray_scattering/.libs/wk1995.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/eltbx/xray_scattering/wk1995.cpp -o cctbx/eltbx/xray_scattering/wk1995.o >/dev/null 2>&1
g++ -o cctbx/examples/convert_ccp4_symop_lib.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -Icctbx/examples -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/examples /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/examples/convert_ccp4_symop_lib.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/examples/find_distances.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -Icctbx/examples -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/examples /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/examples/find_distances.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/examples/getting_started.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -Icctbx/examples -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/examples /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/examples/getting_started.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/examples/lattice_symmetry.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -Icctbx/examples -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/examples /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/examples/lattice_symmetry.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/examples/sym_equiv_sites.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -Icctbx/examples -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/examples /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/examples/sym_equiv_sites.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/examples/sys_abs_equiv_space_groups.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -Icctbx/examples -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/examples /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/examples/sys_abs_equiv_space_groups.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/geometry/boost_python/geometry_ext.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry/boost_python/geometry_ext.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/geometry_restraints/angle_bpl.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/angle_bpl.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
In file included from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/tiny_plain.h:5:0,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/tiny.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:31,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/boost_python/shared_wrapper.h:12,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/angle_bpl.cpp:10:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/detail/misc.h: In member function ‘void scitbx::af::init_functor_null<ElementType>::operator()(ElementType*, const size_t&) const’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/detail/misc.h:44:168: warning: typedef ‘boost_static_assert_typedef_44’ locally defined but not used [-Wunused-local-typedefs]
       SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                        ^
In file included from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared.h:4:0,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/boost_python/shared_wrapper.h:12,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/angle_bpl.cpp:10:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain<ElementType>::shared_plain(scitbx::af::sharing_handle*)’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:198:170: warning: typedef ‘boost_static_assert_typedef_198’ locally defined but not used [-Wunused-local-typedefs]
         SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                          ^
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain<ElementType>::shared_plain(scitbx::af::sharing_handle*, scitbx::af::weak_ref_flag)’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:207:170: warning: typedef ‘boost_static_assert_typedef_207’ locally defined but not used [-Wunused-local-typedefs]
         SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                          ^
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h: In member function ‘scitbx::af::sharing_handle* scitbx::af::shared_plain<ElementType>::handle()’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:248:170: warning: typedef ‘boost_static_assert_typedef_248’ locally defined but not used [-Wunused-local-typedefs]
         SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                          ^
g++ -o cctbx/geometry_restraints/bond_bpl.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/bond_bpl.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
In file included from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/tiny_plain.h:5:0,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/tiny.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:31,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/boost_python/shared_wrapper.h:12,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/bond_bpl.cpp:8:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/detail/misc.h: In member function ‘void scitbx::af::init_functor_null<ElementType>::operator()(ElementType*, const size_t&) const’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/detail/misc.h:44:168: warning: typedef ‘boost_static_assert_typedef_44’ locally defined but not used [-Wunused-local-typedefs]
       SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                        ^
In file included from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared.h:4:0,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/boost_python/shared_wrapper.h:12,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/bond_bpl.cpp:8:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain<ElementType>::shared_plain(scitbx::af::sharing_handle*)’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:198:170: warning: typedef ‘boost_static_assert_typedef_198’ locally defined but not used [-Wunused-local-typedefs]
         SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                          ^
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain<ElementType>::shared_plain(scitbx::af::sharing_handle*, scitbx::af::weak_ref_flag)’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:207:170: warning: typedef ‘boost_static_assert_typedef_207’ locally defined but not used [-Wunused-local-typedefs]
         SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                          ^
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h: In member function ‘scitbx::af::sharing_handle* scitbx::af::shared_plain<ElementType>::handle()’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:248:170: warning: typedef ‘boost_static_assert_typedef_248’ locally defined but not used [-Wunused-local-typedefs]
         SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                          ^
g++ -o cctbx/geometry_restraints/bond_similarity_bpl.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/bond_similarity_bpl.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
In file included from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/tiny_plain.h:5:0,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/tiny.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:31,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/boost_python/shared_wrapper.h:12,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/bond_similarity_bpl.cpp:9:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/detail/misc.h: In member function ‘void scitbx::af::init_functor_null<ElementType>::operator()(ElementType*, const size_t&) const’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/detail/misc.h:44:168: warning: typedef ‘boost_static_assert_typedef_44’ locally defined but not used [-Wunused-local-typedefs]
       SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                        ^
In file included from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared.h:4:0,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/boost_python/shared_wrapper.h:12,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/bond_similarity_bpl.cpp:9:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain<ElementType>::shared_plain(scitbx::af::sharing_handle*)’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:198:170: warning: typedef ‘boost_static_assert_typedef_198’ locally defined but not used [-Wunused-local-typedefs]
         SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                          ^
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain<ElementType>::shared_plain(scitbx::af::sharing_handle*, scitbx::af::weak_ref_flag)’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:207:170: warning: typedef ‘boost_static_assert_typedef_207’ locally defined but not used [-Wunused-local-typedefs]
         SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                          ^
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h: In member function ‘scitbx::af::sharing_handle* scitbx::af::shared_plain<ElementType>::handle()’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:248:170: warning: typedef ‘boost_static_assert_typedef_248’ locally defined but not used [-Wunused-local-typedefs]
         SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                          ^
g++ -o cctbx/geometry_restraints/bond_sorted_bpl.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/bond_sorted_bpl.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
In file included from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/tiny_plain.h:5:0,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/tiny.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/vec3.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/mat3.h:6,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/sym_mat3.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/uctbx.h:8,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/utils.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/bond.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/bond_sorted.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/bond_sorted_bpl.cpp:8:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/detail/misc.h: In member function ‘void scitbx::af::init_functor_null<ElementType>::operator()(ElementType*, const size_t&) const’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/detail/misc.h:44:168: warning: typedef ‘boost_static_assert_typedef_44’ locally defined but not used [-Wunused-local-typedefs]
       SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                        ^
In file included from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared.h:4:0,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/uctbx.h:11,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/utils.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/bond.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/bond_sorted.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/bond_sorted_bpl.cpp:8:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain<ElementType>::shared_plain(scitbx::af::sharing_handle*)’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:198:170: warning: typedef ‘boost_static_assert_typedef_198’ locally defined but not used [-Wunused-local-typedefs]
         SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                          ^
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain<ElementType>::shared_plain(scitbx::af::sharing_handle*, scitbx::af::weak_ref_flag)’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:207:170: warning: typedef ‘boost_static_assert_typedef_207’ locally defined but not used [-Wunused-local-typedefs]
         SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                          ^
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h: In member function ‘scitbx::af::sharing_handle* scitbx::af::shared_plain<ElementType>::handle()’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:248:170: warning: typedef ‘boost_static_assert_typedef_248’ locally defined but not used [-Wunused-local-typedefs]
         SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                          ^
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/bond_sorted_bpl.cpp: In static member function ‘static void cctbx::geometry_restraints::{anonymous}::bond_sorted_asu_proxies_wrappers::wrap()’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/bond_sorted_bpl.cpp:68:57: warning: typedef ‘ccr’ locally defined but not used [-Wunused-local-typedefs]
       typedef return_value_policy<copy_const_reference> ccr;
                                                         ^
g++ -o cctbx/geometry_restraints/chirality_bpl.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/chirality_bpl.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
In file included from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/tiny_plain.h:5:0,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/tiny.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:31,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/boost_python/shared_wrapper.h:12,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/chirality_bpl.cpp:10:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/detail/misc.h: In member function ‘void scitbx::af::init_functor_null<ElementType>::operator()(ElementType*, const size_t&) const’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/detail/misc.h:44:168: warning: typedef ‘boost_static_assert_typedef_44’ locally defined but not used [-Wunused-local-typedefs]
       SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                        ^
In file included from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared.h:4:0,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/boost_python/shared_wrapper.h:12,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/chirality_bpl.cpp:10:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain<ElementType>::shared_plain(scitbx::af::sharing_handle*)’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:198:170: warning: typedef ‘boost_static_assert_typedef_198’ locally defined but not used [-Wunused-local-typedefs]
         SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                          ^
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain<ElementType>::shared_plain(scitbx::af::sharing_handle*, scitbx::af::weak_ref_flag)’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:207:170: warning: typedef ‘boost_static_assert_typedef_207’ locally defined but not used [-Wunused-local-typedefs]
         SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                          ^
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h: In member function ‘scitbx::af::sharing_handle* scitbx::af::shared_plain<ElementType>::handle()’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:248:170: warning: typedef ‘boost_static_assert_typedef_248’ locally defined but not used [-Wunused-local-typedefs]
         SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                          ^
g++ -o cctbx/geometry_restraints/dihedral_bpl.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/dihedral_bpl.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
In file included from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/tiny_plain.h:5:0,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/tiny.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:31,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/boost_python/shared_wrapper.h:12,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/dihedral_bpl.cpp:10:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/detail/misc.h: In member function ‘void scitbx::af::init_functor_null<ElementType>::operator()(ElementType*, const size_t&) const’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/detail/misc.h:44:168: warning: typedef ‘boost_static_assert_typedef_44’ locally defined but not used [-Wunused-local-typedefs]
       SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                        ^
In file included from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared.h:4:0,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/boost_python/shared_wrapper.h:12,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/dihedral_bpl.cpp:10:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain<ElementType>::shared_plain(scitbx::af::sharing_handle*)’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:198:170: warning: typedef ‘boost_static_assert_typedef_198’ locally defined but not used [-Wunused-local-typedefs]
         SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                          ^
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain<ElementType>::shared_plain(scitbx::af::sharing_handle*, scitbx::af::weak_ref_flag)’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:207:170: warning: typedef ‘boost_static_assert_typedef_207’ locally defined but not used [-Wunused-local-typedefs]
         SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                          ^
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h: In member function ‘scitbx::af::sharing_handle* scitbx::af::shared_plain<ElementType>::handle()’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:248:170: warning: typedef ‘boost_static_assert_typedef_248’ locally defined but not used [-Wunused-local-typedefs]
         SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                          ^
g++ -o cctbx/geometry_restraints/geometry_restraints_ext.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/geometry_restraints_ext.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/geometry_restraints/motif_bpl.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/motif_bpl.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
In file included from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/tiny_plain.h:5:0,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/tiny.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:31,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/motif.h:6,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/motif_bpl.cpp:9:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/detail/misc.h: In member function ‘void scitbx::af::init_functor_null<ElementType>::operator()(ElementType*, const size_t&) const’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/detail/misc.h:44:168: warning: typedef ‘boost_static_assert_typedef_44’ locally defined but not used [-Wunused-local-typedefs]
       SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                        ^
In file included from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared.h:4:0,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/motif.h:6,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/motif_bpl.cpp:9:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain<ElementType>::shared_plain(scitbx::af::sharing_handle*)’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:198:170: warning: typedef ‘boost_static_assert_typedef_198’ locally defined but not used [-Wunused-local-typedefs]
         SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                          ^
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain<ElementType>::shared_plain(scitbx::af::sharing_handle*, scitbx::af::weak_ref_flag)’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:207:170: warning: typedef ‘boost_static_assert_typedef_207’ locally defined but not used [-Wunused-local-typedefs]
         SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                          ^
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h: In member function ‘scitbx::af::sharing_handle* scitbx::af::shared_plain<ElementType>::handle()’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:248:170: warning: typedef ‘boost_static_assert_typedef_248’ locally defined but not used [-Wunused-local-typedefs]
         SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                          ^
g++ -o cctbx/geometry_restraints/nonbonded_bpl.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/nonbonded_bpl.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
In file included from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/tiny_plain.h:5:0,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/tiny.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:31,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/boost_python/shared_wrapper.h:12,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/nonbonded_bpl.cpp:9:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/detail/misc.h: In member function ‘void scitbx::af::init_functor_null<ElementType>::operator()(ElementType*, const size_t&) const’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/detail/misc.h:44:168: warning: typedef ‘boost_static_assert_typedef_44’ locally defined but not used [-Wunused-local-typedefs]
       SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                        ^
In file included from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared.h:4:0,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/boost_python/shared_wrapper.h:12,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/nonbonded_bpl.cpp:9:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain<ElementType>::shared_plain(scitbx::af::sharing_handle*)’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:198:170: warning: typedef ‘boost_static_assert_typedef_198’ locally defined but not used [-Wunused-local-typedefs]
         SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                          ^
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain<ElementType>::shared_plain(scitbx::af::sharing_handle*, scitbx::af::weak_ref_flag)’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:207:170: warning: typedef ‘boost_static_assert_typedef_207’ locally defined but not used [-Wunused-local-typedefs]
         SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                          ^
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h: In member function ‘scitbx::af::sharing_handle* scitbx::af::shared_plain<ElementType>::handle()’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:248:170: warning: typedef ‘boost_static_assert_typedef_248’ locally defined but not used [-Wunused-local-typedefs]
         SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                          ^
g++ -o cctbx/geometry_restraints/nonbonded_sorted_bpl.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/nonbonded_sorted_bpl.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
In file included from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/tiny_plain.h:5:0,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/tiny.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/vec3.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/mat3.h:6,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/sym_mat3.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/uctbx.h:8,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/sym_equiv_sites.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/crystal/direct_space_asu.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/asu_cache.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/nonbonded.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/nonbonded_sorted.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/nonbonded_sorted_bpl.cpp:7:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/detail/misc.h: In member function ‘void scitbx::af::init_functor_null<ElementType>::operator()(ElementType*, const size_t&) const’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/detail/misc.h:44:168: warning: typedef ‘boost_static_assert_typedef_44’ locally defined but not used [-Wunused-local-typedefs]
       SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                        ^
In file included from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared.h:4:0,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/uctbx.h:11,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/sym_equiv_sites.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/crystal/direct_space_asu.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/asu_cache.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/nonbonded.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/nonbonded_sorted.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/nonbonded_sorted_bpl.cpp:7:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain<ElementType>::shared_plain(scitbx::af::sharing_handle*)’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:198:170: warning: typedef ‘boost_static_assert_typedef_198’ locally defined but not used [-Wunused-local-typedefs]
         SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                          ^
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain<ElementType>::shared_plain(scitbx::af::sharing_handle*, scitbx::af::weak_ref_flag)’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:207:170: warning: typedef ‘boost_static_assert_typedef_207’ locally defined but not used [-Wunused-local-typedefs]
         SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                          ^
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h: In member function ‘scitbx::af::sharing_handle* scitbx::af::shared_plain<ElementType>::handle()’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:248:170: warning: typedef ‘boost_static_assert_typedef_248’ locally defined but not used [-Wunused-local-typedefs]
         SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                          ^
g++ -o cctbx/geometry_restraints/planarity_bpl.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/planarity_bpl.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
In file included from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/tiny_plain.h:5:0,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/tiny.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:31,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared.h:4,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/boost_python/shared_wrapper.h:12,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/planarity_bpl.cpp:10:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/detail/misc.h: In member function ‘void scitbx::af::init_functor_null<ElementType>::operator()(ElementType*, const size_t&) const’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/detail/misc.h:44:168: warning: typedef ‘boost_static_assert_typedef_44’ locally defined but not used [-Wunused-local-typedefs]
       SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                        ^
In file included from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared.h:4:0,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/boost_python/shared_wrapper.h:12,
                 from /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/geometry_restraints/planarity_bpl.cpp:10:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain<ElementType>::shared_plain(scitbx::af::sharing_handle*)’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:198:170: warning: typedef ‘boost_static_assert_typedef_198’ locally defined but not used [-Wunused-local-typedefs]
         SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                          ^
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h: In constructor ‘scitbx::af::shared_plain<ElementType>::shared_plain(scitbx::af::sharing_handle*, scitbx::af::weak_ref_flag)’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:207:170: warning: typedef ‘boost_static_assert_typedef_207’ locally defined but not used [-Wunused-local-typedefs]
         SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                          ^
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h: In member function ‘scitbx::af::sharing_handle* scitbx::af::shared_plain<ElementType>::handle()’:
/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/scitbx/array_family/shared_plain.h:248:170: warning: typedef ‘boost_static_assert_typedef_248’ locally defined but not used [-Wunused-local-typedefs]
         SCITBX_ARRAY_FAMILY_STATIC_ASSERT_HAS_TRIVIAL_DESTRUCTOR
                                                                                                                                                                          ^
g++ -o cctbx/maptbx/boost_python/basic_map.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/maptbx/boost_python/basic_map.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/maptbx/boost_python/coordinate_transformers.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/maptbx/boost_python/coordinate_transformers.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/maptbx/boost_python/grid_indices_around_sites.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/maptbx/boost_python/grid_indices_around_sites.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/maptbx/boost_python/grid_tags.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/maptbx/boost_python/grid_tags.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/maptbx/boost_python/gridding.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/maptbx/boost_python/gridding.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/maptbx/boost_python/mapper.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/maptbx/boost_python/mapper.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/maptbx/boost_python/maptbx_ext.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/maptbx/boost_python/maptbx_ext.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/maptbx/boost_python/misc.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/maptbx/boost_python/misc.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/maptbx/boost_python/peak_search.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/maptbx/boost_python/peak_search.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/maptbx/boost_python/pymol_interface.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/maptbx/boost_python/pymol_interface.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/maptbx/boost_python/real_space_refinement.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/maptbx/boost_python/real_space_refinement.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/maptbx/boost_python/statistics.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/maptbx/boost_python/statistics.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/maptbx/boost_python/structure_factors.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/maptbx/boost_python/structure_factors.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/masks/boost_python/masks_ext.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/masks/boost_python/masks_ext.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/math/boost_python/math_ext.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/math/boost_python/math_ext.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
g++ -o cctbx/math/time_trigonometry.o -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/math/time_trigonometry.cpp
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option ‘-Wimplicit-function-declaration’ is valid for C/ObjC but not for C++ [enabled by default]
libtool --mode=compile --tag=CXX g++ -o cctbx/miller/asu.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/miller/asu.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/miller/asu.cpp  -fPIC -DPIC -o cctbx/miller/.libs/asu.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/miller/asu.cpp -o cctbx/miller/asu.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/miller/bins.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/miller/bins.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/miller/bins.cpp  -fPIC -DPIC -o cctbx/miller/.libs/bins.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/miller/bins.cpp -o cctbx/miller/bins.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/miller/index_generator.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/miller/index_generator.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/miller/index_generator.cpp  -fPIC -DPIC -o cctbx/miller/.libs/index_generator.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/miller/index_generator.cpp -o cctbx/miller/index_generator.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/miller/index_span.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/miller/index_span.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/miller/index_span.cpp  -fPIC -DPIC -o cctbx/miller/.libs/index_span.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/miller/index_span.cpp -o cctbx/miller/index_span.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/miller/match_bijvoet_mates.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/miller/match_bijvoet_mates.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/miller/match_bijvoet_mates.cpp  -fPIC -DPIC -o cctbx/miller/.libs/match_bijvoet_mates.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/miller/match_bijvoet_mates.cpp -o cctbx/miller/match_bijvoet_mates.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/miller/match_indices.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/miller/match_indices.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/miller/match_indices.cpp  -fPIC -DPIC -o cctbx/miller/.libs/match_indices.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/miller/match_indices.cpp -o cctbx/miller/match_indices.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/miller/match_multi_indices.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/miller/match_multi_indices.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/miller/match_multi_indices.cpp  -fPIC -DPIC -o cctbx/miller/.libs/match_multi_indices.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/miller/match_multi_indices.cpp -o cctbx/miller/match_multi_indices.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/miller/sym_equiv.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/miller/sym_equiv.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/miller/sym_equiv.cpp  -fPIC -DPIC -o cctbx/miller/.libs/sym_equiv.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/miller/sym_equiv.cpp -o cctbx/miller/sym_equiv.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/sgtbx/bricks.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/bricks.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/bricks.cpp  -fPIC -DPIC -o cctbx/sgtbx/.libs/bricks.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/bricks.cpp -o cctbx/sgtbx/bricks.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/sgtbx/change_of_basis_op.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/change_of_basis_op.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/change_of_basis_op.cpp  -fPIC -DPIC -o cctbx/sgtbx/.libs/change_of_basis_op.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/change_of_basis_op.cpp -o cctbx/sgtbx/change_of_basis_op.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/sgtbx/find_affine.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/find_affine.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/find_affine.cpp  -fPIC -DPIC -o cctbx/sgtbx/.libs/find_affine.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/find_affine.cpp -o cctbx/sgtbx/find_affine.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/sgtbx/group_codes.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/group_codes.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/group_codes.cpp  -fPIC -DPIC -o cctbx/sgtbx/.libs/group_codes.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/group_codes.cpp -o cctbx/sgtbx/group_codes.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/sgtbx/hall_in.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/hall_in.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/hall_in.cpp  -fPIC -DPIC -o cctbx/sgtbx/.libs/hall_in.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/hall_in.cpp -o cctbx/sgtbx/hall_in.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/sgtbx/lattice_tr.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/lattice_tr.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/lattice_tr.cpp  -fPIC -DPIC -o cctbx/sgtbx/.libs/lattice_tr.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/lattice_tr.cpp -o cctbx/sgtbx/lattice_tr.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/sgtbx/lattice_symmetry.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/lattice_symmetry.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/lattice_symmetry.cpp  -fPIC -DPIC -o cctbx/sgtbx/.libs/lattice_symmetry.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/lattice_symmetry.cpp -o cctbx/sgtbx/lattice_symmetry.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/sgtbx/miller.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/miller.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/miller.cpp  -fPIC -DPIC -o cctbx/sgtbx/.libs/miller.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/miller.cpp -o cctbx/sgtbx/miller.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/sgtbx/reciprocal_space_asu.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/reciprocal_space_asu.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/reciprocal_space_asu.cpp  -fPIC -DPIC -o cctbx/sgtbx/.libs/reciprocal_space_asu.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/reciprocal_space_asu.cpp -o cctbx/sgtbx/reciprocal_space_asu.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/sgtbx/reciprocal_space_ref_asu.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/reciprocal_space_ref_asu.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/reciprocal_space_ref_asu.cpp  -fPIC -DPIC -o cctbx/sgtbx/.libs/reciprocal_space_ref_asu.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/reciprocal_space_ref_asu.cpp -o cctbx/sgtbx/reciprocal_space_ref_asu.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/sgtbx/rot_mx.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/rot_mx.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/rot_mx.cpp  -fPIC -DPIC -o cctbx/sgtbx/.libs/rot_mx.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/rot_mx.cpp -o cctbx/sgtbx/rot_mx.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/sgtbx/rot_mx_info.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/rot_mx_info.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/rot_mx_info.cpp  -fPIC -DPIC -o cctbx/sgtbx/.libs/rot_mx_info.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/rot_mx_info.cpp -o cctbx/sgtbx/rot_mx_info.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/sgtbx/row_echelon_solve.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/row_echelon_solve.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/row_echelon_solve.cpp  -fPIC -DPIC -o cctbx/sgtbx/.libs/row_echelon_solve.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/row_echelon_solve.cpp -o cctbx/sgtbx/row_echelon_solve.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/sgtbx/rt_mx.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/rt_mx.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/rt_mx.cpp  -fPIC -DPIC -o cctbx/sgtbx/.libs/rt_mx.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/rt_mx.cpp -o cctbx/sgtbx/rt_mx.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/sgtbx/select_generators.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/select_generators.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/select_generators.cpp  -fPIC -DPIC -o cctbx/sgtbx/.libs/select_generators.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/select_generators.cpp -o cctbx/sgtbx/select_generators.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/sgtbx/seminvariant.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/seminvariant.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/seminvariant.cpp  -fPIC -DPIC -o cctbx/sgtbx/.libs/seminvariant.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/seminvariant.cpp -o cctbx/sgtbx/seminvariant.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/sgtbx/site_symmetry.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/site_symmetry.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/site_symmetry.cpp  -fPIC -DPIC -o cctbx/sgtbx/.libs/site_symmetry.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/site_symmetry.cpp -o cctbx/sgtbx/site_symmetry.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/sgtbx/space_group.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/space_group.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/space_group.cpp  -fPIC -DPIC -o cctbx/sgtbx/.libs/space_group.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/space_group.cpp -o cctbx/sgtbx/space_group.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/sgtbx/space_group_type.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/space_group_type.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/space_group_type.cpp  -fPIC -DPIC -o cctbx/sgtbx/.libs/space_group_type.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/space_group_type.cpp -o cctbx/sgtbx/space_group_type.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/sgtbx/symbols.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/symbols.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/symbols.cpp  -fPIC -DPIC -o cctbx/sgtbx/.libs/symbols.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/symbols.cpp -o cctbx/sgtbx/symbols.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/sgtbx/tensor_rank_2.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/tensor_rank_2.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/tensor_rank_2.cpp  -fPIC -DPIC -o cctbx/sgtbx/.libs/tensor_rank_2.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/tensor_rank_2.cpp -o cctbx/sgtbx/tensor_rank_2.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/sgtbx/tr_group.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/tr_group.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/tr_group.cpp  -fPIC -DPIC -o cctbx/sgtbx/.libs/tr_group.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/tr_group.cpp -o cctbx/sgtbx/tr_group.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/sgtbx/tr_vec.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/tr_vec.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/tr_vec.cpp  -fPIC -DPIC -o cctbx/sgtbx/.libs/tr_vec.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/tr_vec.cpp -o cctbx/sgtbx/tr_vec.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/sgtbx/utils.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/utils.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/utils.cpp  -fPIC -DPIC -o cctbx/sgtbx/.libs/utils.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/utils.cpp -o cctbx/sgtbx/utils.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/sgtbx/wyckoff.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/wyckoff.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/wyckoff.cpp  -fPIC -DPIC -o cctbx/sgtbx/.libs/wyckoff.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/wyckoff.cpp -o cctbx/sgtbx/wyckoff.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/sgtbx/reference_settings/hall_symbol_table.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/reference_settings/hall_symbol_table.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/reference_settings/hall_symbol_table.cpp  -fPIC -DPIC -o cctbx/sgtbx/reference_settings/.libs/hall_symbol_table.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/reference_settings/hall_symbol_table.cpp -o cctbx/sgtbx/reference_settings/hall_symbol_table.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/sgtbx/reference_settings/matrix_group_code_table.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/reference_settings/matrix_group_code_table.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/reference_settings/matrix_group_code_table.cpp  -fPIC -DPIC -o cctbx/sgtbx/reference_settings/.libs/matrix_group_code_table.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/reference_settings/matrix_group_code_table.cpp -o cctbx/sgtbx/reference_settings/matrix_group_code_table.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/sgtbx/reference_settings/normalizer.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/reference_settings/normalizer.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/reference_settings/normalizer.cpp  -fPIC -DPIC -o cctbx/sgtbx/reference_settings/.libs/normalizer.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/reference_settings/normalizer.cpp -o cctbx/sgtbx/reference_settings/normalizer.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/sgtbx/reference_settings/wyckoff.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/reference_settings/wyckoff.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/reference_settings/wyckoff.cpp  -fPIC -DPIC -o cctbx/sgtbx/reference_settings/.libs/wyckoff.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/sgtbx/reference_settings/wyckoff.cpp -o cctbx/sgtbx/reference_settings/wyckoff.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/uctbx/uctbx.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/uctbx/uctbx.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/uctbx/uctbx.cpp  -fPIC -DPIC -o cctbx/uctbx/.libs/uctbx.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/uctbx/uctbx.cpp -o cctbx/uctbx/uctbx.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/uctbx/spoil_optimization.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/uctbx/spoil_optimization.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/uctbx/spoil_optimization.cpp  -fPIC -DPIC -o cctbx/uctbx/.libs/spoil_optimization.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/uctbx/spoil_optimization.cpp -o cctbx/uctbx/spoil_optimization.o >/dev/null 2>&1
libtool --mode=compile --tag=CXX g++ -o cctbx/uctbx/crystal_orientation.lo -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/uctbx/crystal_orientation.cpp
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/uctbx/crystal_orientation.cpp  -fPIC -DPIC -o cctbx/uctbx/.libs/crystal_orientation.o
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
cc1plus: warning: command line option '-Wimplicit-function-declaration' is valid for C/ObjC but not for C++ [enabled by default]
libtool: compile:  g++ -c -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wenum-compare -fPIC -fno-strict-aliasing -w -DNDEBUG -DBOOST_ALL_NO_LIB -Ofast -funroll-loops -pipe -ftracer -march=corei7-avx -mtune=corei7-avx -mcx16 -msahf -mno-movbe -maes -mpclmul -mpopcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mavx -msse4.2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -frecord-gcc-switches -g -Wimplicit-function-declaration -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work_python2.7/temp.linux-x86_64-2.7/cctbx-build/include -I/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/cctbx/uctbx/crystal_orientation.cpp -o cctbx/uctbx/crystal_orientation.o >/dev/null 2>&1
libtool --mode=link --tag=CXX g++ -o lib/libcctbx.la -Wl,-O1 -Wl,--as-needed -Wl,-O1 -Wl,--hash-style=gnu -Wl,--sort-common -rpath /usr/lib64 cctbx/eltbx/basic.lo cctbx/eltbx/xray_scattering/it1992.lo cctbx/eltbx/xray_scattering/wk1995.lo cctbx/eltbx/xray_scattering/n_gaussian_raw.lo cctbx/eltbx/xray_scattering/n_gaussian.lo cctbx/eltbx/fp_fdp.lo cctbx/eltbx/henke.lo cctbx/eltbx/henke_tables_01_12.lo cctbx/eltbx/henke_tables_13_24.lo cctbx/eltbx/henke_tables_25_36.lo cctbx/eltbx/henke_tables_37_48.lo cctbx/eltbx/henke_tables_49_60.lo cctbx/eltbx/henke_tables_61_72.lo cctbx/eltbx/henke_tables_73_84.lo cctbx/eltbx/henke_tables_85_92.lo cctbx/eltbx/icsd_radii.lo cctbx/eltbx/covalent_radii.lo cctbx/eltbx/neutron.lo cctbx/eltbx/sasaki.lo cctbx/eltbx/sasaki_tables_01_12.lo cctbx/eltbx/sasaki_tables_13_24.lo cctbx/eltbx/sasaki_tables_25_36.lo cctbx/eltbx/sasaki_tables_37_48.lo cctbx/eltbx/sasaki_tables_49_60.lo cctbx/eltbx/sasaki_tables_61_72.lo cctbx/eltbx/sasaki_tables_73_82.lo cctbx/eltbx/tiny_pse.lo cctbx/eltbx/wavelengths.lo cctbx/eltbx/electron_scattering/peng1996.lo cctbx/miller/asu.lo cctbx/miller/bins.lo cctbx/miller/index_generator.lo cctbx/miller/index_span.lo cctbx/miller/match_bijvoet_mates.lo cctbx/miller/match_indices.lo cctbx/miller/match_multi_indices.lo cctbx/miller/sym_equiv.lo cctbx/sgtbx/bricks.lo cctbx/sgtbx/change_of_basis_op.lo cctbx/sgtbx/find_affine.lo cctbx/sgtbx/group_codes.lo cctbx/sgtbx/hall_in.lo cctbx/sgtbx/lattice_tr.lo cctbx/sgtbx/lattice_symmetry.lo cctbx/sgtbx/miller.lo cctbx/sgtbx/reciprocal_space_asu.lo cctbx/sgtbx/reciprocal_space_ref_asu.lo cctbx/sgtbx/rot_mx.lo cctbx/sgtbx/rot_mx_info.lo cctbx/sgtbx/row_echelon_solve.lo cctbx/sgtbx/rt_mx.lo cctbx/sgtbx/select_generators.lo cctbx/sgtbx/seminvariant.lo cctbx/sgtbx/site_symmetry.lo cctbx/sgtbx/space_group.lo cctbx/sgtbx/space_group_type.lo cctbx/sgtbx/symbols.lo cctbx/sgtbx/tensor_rank_2.lo cctbx/sgtbx/tr_group.lo cctbx/sgtbx/tr_vec.lo cctbx/sgtbx/utils.lo cctbx/sgtbx/wyckoff.lo cctbx/sgtbx/reference_settings/hall_symbol_table.lo cctbx/sgtbx/reference_settings/matrix_group_code_table.lo cctbx/sgtbx/reference_settings/normalizer.lo cctbx/sgtbx/reference_settings/wyckoff.lo cctbx/uctbx/uctbx.lo cctbx/uctbx/spoil_optimization.lo cctbx/uctbx/crystal_orientation.lo -Llib -L/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/lib -Llib/usr/lib64 -L/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/lib/usr/lib64 -lm
libtool: link: x86_64-pc-linux-gnu-g++  -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/4.8.0/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.8.0/crtbeginS.o  cctbx/eltbx/.libs/basic.o cctbx/eltbx/xray_scattering/.libs/it1992.o cctbx/eltbx/xray_scattering/.libs/wk1995.o cctbx/eltbx/xray_scattering/.libs/n_gaussian_raw.o cctbx/eltbx/xray_scattering/.libs/n_gaussian.o cctbx/eltbx/.libs/fp_fdp.o cctbx/eltbx/.libs/henke.o cctbx/eltbx/.libs/henke_tables_01_12.o cctbx/eltbx/.libs/henke_tables_13_24.o cctbx/eltbx/.libs/henke_tables_25_36.o cctbx/eltbx/.libs/henke_tables_37_48.o cctbx/eltbx/.libs/henke_tables_49_60.o cctbx/eltbx/.libs/henke_tables_61_72.o cctbx/eltbx/.libs/henke_tables_73_84.o cctbx/eltbx/.libs/henke_tables_85_92.o cctbx/eltbx/.libs/icsd_radii.o cctbx/eltbx/.libs/covalent_radii.o cctbx/eltbx/.libs/neutron.o cctbx/eltbx/.libs/sasaki.o cctbx/eltbx/.libs/sasaki_tables_01_12.o cctbx/eltbx/.libs/sasaki_tables_13_24.o cctbx/eltbx/.libs/sasaki_tables_25_36.o cctbx/eltbx/.libs/sasaki_tables_37_48.o cctbx/eltbx/.libs/sasaki_tables_49_60.o cctbx/eltbx/.libs/sasaki_tables_61_72.o cctbx/eltbx/.libs/sasaki_tables_73_82.o cctbx/eltbx/.libs/tiny_pse.o cctbx/eltbx/.libs/wavelengths.o cctbx/eltbx/electron_scattering/.libs/peng1996.o cctbx/miller/.libs/asu.o cctbx/miller/.libs/bins.o cctbx/miller/.libs/index_generator.o cctbx/miller/.libs/index_span.o cctbx/miller/.libs/match_bijvoet_mates.o cctbx/miller/.libs/match_indices.o cctbx/miller/.libs/match_multi_indices.o cctbx/miller/.libs/sym_equiv.o cctbx/sgtbx/.libs/bricks.o cctbx/sgtbx/.libs/change_of_basis_op.o cctbx/sgtbx/.libs/find_affine.o cctbx/sgtbx/.libs/group_codes.o cctbx/sgtbx/.libs/hall_in.o cctbx/sgtbx/.libs/lattice_tr.o cctbx/sgtbx/.libs/lattice_symmetry.o cctbx/sgtbx/.libs/miller.o cctbx/sgtbx/.libs/reciprocal_space_asu.o cctbx/sgtbx/.libs/reciprocal_space_ref_asu.o cctbx/sgtbx/.libs/rot_mx.o cctbx/sgtbx/.libs/rot_mx_info.o cctbx/sgtbx/.libs/row_echelon_solve.o cctbx/sgtbx/.libs/rt_mx.o cctbx/sgtbx/.libs/select_generators.o cctbx/sgtbx/.libs/seminvariant.o cctbx/sgtbx/.libs/site_symmetry.o cctbx/sgtbx/.libs/space_group.o cctbx/sgtbx/.libs/space_group_type.o cctbx/sgtbx/.libs/symbols.o cctbx/sgtbx/.libs/tensor_rank_2.o cctbx/sgtbx/.libs/tr_group.o cctbx/sgtbx/.libs/tr_vec.o cctbx/sgtbx/.libs/utils.o cctbx/sgtbx/.libs/wyckoff.o cctbx/sgtbx/reference_settings/.libs/hall_symbol_table.o cctbx/sgtbx/reference_settings/.libs/matrix_group_code_table.o cctbx/sgtbx/reference_settings/.libs/normalizer.o cctbx/sgtbx/reference_settings/.libs/wyckoff.o cctbx/uctbx/.libs/uctbx.o cctbx/uctbx/.libs/spoil_optimization.o cctbx/uctbx/.libs/crystal_orientation.o   -Llib -L/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/lib -Llib/usr/lib64 -L/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work/cctbx_sources/lib/usr/lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.8.0/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/4.8.0/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/4.8.0/../../../../lib64/crtn.o  -Wl,-O1 -Wl,--as-needed -Wl,-O1 -Wl,--hash-style=gnu -Wl,--sort-common   -Wl,-soname -Wl,libcctbx.so.0 -o lib/.libs/libcctbx.so.0.0.0
x86_64-pc-linux-gnu-g++: error: /usr/lib/gcc/x86_64-pc-linux-gnu/4.8.0/crtbeginS.o: No such file or directory
x86_64-pc-linux-gnu-g++: error: /usr/lib/gcc/x86_64-pc-linux-gnu/4.8.0/crtendS.o: No such file or directory
scons: *** [lib/libcctbx.la] Error 1
scons: building terminated because of errors.
error: command '/usr/bin/python2.7' failed with exit status 2
 [31;01m*[0m ERROR: sci-libs/cctbx-2013.02.27.0005 failed (compile phase):
 [31;01m*[0m   (no error message)
 [31;01m*[0m 
 [31;01m*[0m Call stack:
 [31;01m*[0m     ebuild.sh, line   93:  Called src_compile
 [31;01m*[0m   environment, line 3189:  Called distutils-r1_src_compile
 [31;01m*[0m   environment, line  943:  Called _distutils-r1_run_foreach_impl 'distutils-r1_python_compile'
 [31;01m*[0m   environment, line  411:  Called distutils-r1_run_phase 'distutils-r1_python_compile'
 [31;01m*[0m   environment, line  932:  Called distutils-r1_python_compile
 [31;01m*[0m   environment, line  836:  Called esetup.py
 [31;01m*[0m   environment, line 1705:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m       "${@}" || die
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the output of `emerge --info '=sci-libs/cctbx-2013.02.27.0005'`,
 [31;01m*[0m the complete build log and the output of `emerge -pqv '=sci-libs/cctbx-2013.02.27.0005'`.
 [31;01m*[0m This ebuild is from an overlay named 'science': '/local/overlays/sci/'
 [31;01m*[0m The complete build log is located at '/var/log/portage/build/sci-libs/cctbx-2013.02.27.0005:20130605-164818.log'.
 [31;01m*[0m For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/temp/build.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/temp/environment'.
 [31;01m*[0m Working directory: '/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work'
 [31;01m*[0m S: '/var/tmp/portage/sci-libs/cctbx-2013.02.27.0005/work'