original error message when emerging scipy

error_log.txt (text/plain), 7.72 KB, created by brandsmeier on 2013-05-08 21:56:09 UTC

# emerge -1v "<=sci-libs/scipy-0.10.0"

These are the packages that would be merged, in order:

Calculating dependencies... done!
[ebuild     UD ] sci-libs/scipy-0.9.0-r1 [0.11.0-r1] USE="-doc -umfpack (-test%)" PYTHON_TARGETS="(-python2_5%) (-python2_6%) (-python2_7%*)" 0 kB

Total: 1 package (1 downgrade), Size of downloads: 0 kB

!!! The following installed packages are masked:
- dev-util/eclipse-sdk-3.5.1-r1::gentoo (masked by: package.mask)
/usr/portage/profiles/package.mask:
# Ralph Sennhauser <[e-mail]> (18 Jul 2012)
# Unmaintained, multiple vulnarabilities. #351626
# A more recent source build maintained by the community is available in the
# seden overlay. A more recent binary is available in the java-overlay.

For more information, see the MASKED PACKAGES section in the emerge
man page or refer to the Gentoo Handbook.



>>> Verifying ebuild manifests

>>> Emerging (1 of 1) sci-libs/scipy-0.9.0-r1
 * scipy-0.9.0.tar.gz SHA256 SHA512 WHIRLPOOL size ;-) ...                                                [ ok ]
 * Using following Fortran compiler:
 *   F77: x86_64-pc-linux-gnu-gfortran
 *   FC:  x86_64-pc-linux-gnu-gfortran
>>> Unpacking source...
>>> Unpacking scipy-0.9.0.tar.gz to /var/tmp/portage/sci-libs/scipy-0.9.0-r1/work
>>> Source unpacked in /var/tmp/portage/sci-libs/scipy-0.9.0-r1/work
>>> Preparing source in /var/tmp/portage/sci-libs/scipy-0.9.0-r1/work/scipy-0.9.0 ...
 * Applying scipy-0.9.0-superlu.patch ...                                                                 [ ok ]
 * Applying scipy-0.9.0-qhull.patch ...                                                                   [ ok ]
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-libs/scipy-0.9.0-r1/work/scipy-0.9.0 ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-libs/scipy-0.9.0-r1/work/scipy-0.9.0 ...
 * Building of sci-libs/scipy-0.9.0-r1 with CPython 2.7...
python2.7 setup.py build -b build-2.7 config_fc --noopt --noarch
Warning: No configuration returned, assuming unavailable.blas_opt_info:
blas_mkl_info:
  libraries mkl,vml,guide not found in ['/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib']
  NOT AVAILABLE

system_info:
  NOT AVAILABLE

/usr/lib64/python2.7/site-packages/numpy/distutils/system_info.py:1488: UserWarning: 
    Atlas (http://math-atlas.sourceforge.net/) libraries not found.
    Directories to search for the libraries can be specified in the
    numpy/distutils/site.cfg file (section [atlas]) or by setting
    the ATLAS environment variable.
  warnings.warn(AtlasNotFoundError.__doc__)
blas_info:
/usr/lib64/python2.7/site-packages/numpy/distutils/system_info.py:558: UserWarning: Specified path  is invalid.
  warnings.warn('Specified path %s is invalid.' % d)
  libraries cblas,atlas,blas,atlas not found in ['/usr/lib64']
  NOT AVAILABLE

/usr/lib64/python2.7/site-packages/numpy/distutils/system_info.py:1497: UserWarning: 
    Blas (http://www.netlib.org/blas/) libraries not found.
    Directories to search for the libraries can be specified in the
    numpy/distutils/site.cfg file (section [blas]) or by setting
    the BLAS environment variable.
  warnings.warn(BlasNotFoundError.__doc__)
blas_src_info:
  NOT AVAILABLE

/usr/lib64/python2.7/site-packages/numpy/distutils/system_info.py:1500: UserWarning: 
    Blas (http://www.netlib.org/blas/) sources not found.
    Directories to search for the sources can be specified in the
    numpy/distutils/site.cfg file (section [blas_src]) or by setting
    the BLAS_SRC environment variable.
  warnings.warn(BlasSrcNotFoundError.__doc__)
Traceback (most recent call last):
  File "setup.py", line 181, in <module>
    setup_package()
  File "setup.py", line 173, in setup_package
    configuration=configuration )
  File "/usr/lib64/python2.7/site-packages/numpy/distutils/core.py", line 152, in setup
    config = configuration()
  File "setup.py", line 122, in configuration
    config.add_subpackage('scipy')
  File "/usr/lib64/python2.7/site-packages/numpy/distutils/misc_util.py", line 1003, in add_subpackage
    caller_level = 2)
  File "/usr/lib64/python2.7/site-packages/numpy/distutils/misc_util.py", line 972, in get_subpackage
    caller_level = caller_level + 1)
  File "/usr/lib64/python2.7/site-packages/numpy/distutils/misc_util.py", line 909, in _get_configuration_from_setup_py
    config = setup_module.configuration(*args)
  File "scipy/setup.py", line 8, in configuration
    config.add_subpackage('integrate')
  File "/usr/lib64/python2.7/site-packages/numpy/distutils/misc_util.py", line 1003, in add_subpackage
    caller_level = 2)
  File "/usr/lib64/python2.7/site-packages/numpy/distutils/misc_util.py", line 972, in get_subpackage
    caller_level = caller_level + 1)
  File "/usr/lib64/python2.7/site-packages/numpy/distutils/misc_util.py", line 909, in _get_configuration_from_setup_py
    config = setup_module.configuration(*args)
  File "scipy/integrate/setup.py", line 10, in configuration
    blas_opt = get_info('blas_opt',notfound_action=2)
  File "/usr/lib64/python2.7/site-packages/numpy/distutils/system_info.py", line 332, in get_info
    return cl().get_info(notfound_action)
  File "/usr/lib64/python2.7/site-packages/numpy/distutils/system_info.py", line 491, in get_info
    raise self.notfounderror(self.notfounderror.__doc__)
numpy.distutils.system_info.BlasNotFoundError: 
    Blas (http://www.netlib.org/blas/) libraries not found.
    Directories to search for the libraries can be specified in the
    numpy/distutils/site.cfg file (section [blas]) or by setting
    the BLAS environment variable.
 * ERROR: sci-libs/scipy-0.9.0-r1 failed (compile phase):
 *   Building failed with CPython 2.7 in distutils_building() function
 * 
 * Call stack:
 *     ebuild.sh, line   93:  Called src_compile
 *   environment, line 5710:  Called distutils_src_compile 'config_fc' '--noopt' '--noarch'
 *   environment, line 1507:  Called python_execute_function 'distutils_building' 'config_fc' '--noopt' '--noarch'
 *   environment, line 3974:  Called die
 * The specific snippet of code:
 *                       die "${failure_message}";
 * 
 * If you need support, post the output of `emerge --info '=sci-libs/scipy-0.9.0-r1'`,
 * the complete build log and the output of `emerge -pqv '=sci-libs/scipy-0.9.0-r1'`.
 * The complete build log is located at '/var/tmp/portage/sci-libs/scipy-0.9.0-r1/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-libs/scipy-0.9.0-r1/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-libs/scipy-0.9.0-r1/work/scipy-0.9.0'
 * S: '/var/tmp/portage/sci-libs/scipy-0.9.0-r1/work/scipy-0.9.0'

>>> Failed to emerge sci-libs/scipy-0.9.0-r1, Log file:

>>>  '/var/tmp/portage/sci-libs/scipy-0.9.0-r1/temp/build.log'

 * Messages for package sci-libs/scipy-0.9.0-r1:

 * ERROR: sci-libs/scipy-0.9.0-r1 failed (compile phase):
 *   Building failed with CPython 2.7 in distutils_building() function
 * 
 * Call stack:
 *     ebuild.sh, line   93:  Called src_compile
 *   environment, line 5710:  Called distutils_src_compile 'config_fc' '--noopt' '--noarch'
 *   environment, line 1507:  Called python_execute_function 'distutils_building' 'config_fc' '--noopt' '--noarch'
 *   environment, line 3974:  Called die
 * The specific snippet of code:
 *                       die "${failure_message}";
 * 
 * If you need support, post the output of `emerge --info '=sci-libs/scipy-0.9.0-r1'`,
 * the complete build log and the output of `emerge -pqv '=sci-libs/scipy-0.9.0-r1'`.
 * The complete build log is located at '/var/tmp/portage/sci-libs/scipy-0.9.0-r1/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-libs/scipy-0.9.0-r1/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-libs/scipy-0.9.0-r1/work/scipy-0.9.0'
 * S: '/var/tmp/portage/sci-libs/scipy-0.9.0-r1/work/scipy-0.9.0'