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Gentoo's Bugzilla – Attachment 345698 Details for
Bug 466112
sci-libs/libghemical-3.0.0 fails to configure - blas library not found due to package expecting tradition blas.so lapack.so symlinks in /usr/lib
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1366081008-install-sci-libs_libghemical-3.0.0:0::gentoo.out
1366081008-install-sci-libs_libghemical-3.0.0:0::gentoo.out (text/plain), 10.97 KB, created by
cmuelle8
on 2013-04-16 14:41:06 UTC
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Description:
1366081008-install-sci-libs_libghemical-3.0.0:0::gentoo.out
Filename:
MIME Type:
Creator:
cmuelle8
Created:
2013-04-16 14:41:06 UTC
Size:
10.97 KB
patch
obsolete
>[34m>>>[0m Running ebuild phase killold as root:root... >[34m>>>[0m Starting builtin_killold >[34m>>>[0m Done builtin_killold >[34m>>>[0m Completed ebuild phase killold >[34m>>>[0m Running ebuild phases init saveenv as paludisbuild:paludisbuild... >[34m>>>[0m Starting builtin_init >[34m>>>[0m Done builtin_init >[34m>>>[0m Starting builtin_saveenv >[34m>>>[0m Done builtin_saveenv >[34m>>>[0m Completed ebuild phases init saveenv >[34m>>>[0m Running ebuild phases loadenv setup saveenv as root:root... >[34m>>>[0m Starting builtin_loadenv >[34m>>>[0m Done builtin_loadenv >[34m>>>[0m Starting pkg_setup >[34m>>>[0m Done pkg_setup >[34m>>>[0m Starting builtin_saveenv >[34m>>>[0m Done builtin_saveenv >[34m>>>[0m Completed ebuild phases loadenv setup saveenv >[34m>>>[0m Running ebuild phases loadenv unpack saveenv as paludisbuild:paludisbuild... >[34m>>>[0m Starting builtin_loadenv >[34m>>>[0m Done builtin_loadenv >[34m>>>[0m Starting src_unpack >>>> Unpacking libghemical-3.0.0.tar.gz to /var/tmp/paludis/sci-libs-libghemical-3.0.0/work >tar zxf /var/paludis/distfiles/libghemical-3.0.0.tar.gz --no-same-owner >[34m>>>[0m Done src_unpack >[34m>>>[0m Starting builtin_saveenv >[34m>>>[0m Done builtin_saveenv >[34m>>>[0m Completed ebuild phases loadenv unpack saveenv >[34m>>>[0m Running ebuild phases loadenv prepare saveenv as paludisbuild:paludisbuild... >[34m>>>[0m Starting builtin_loadenv >[34m>>>[0m Done builtin_loadenv >[34m>>>[0m Starting src_prepare > [32;01m*[0m Applying libghemical-2.98-gl.patch ... >[A[73G [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running eautoreconf in '/var/tmp/paludis/sci-libs-libghemical-3.0.0/work/libghemical-3.0.0' ... > [32;01m*[0m Running glib-gettextize --copy --force ... >[A[73G [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running intltoolize --automake --copy --force ... >[A[73G [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running libtoolize --install --copy --force --automake ... >[A[73G [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running aclocal ... >[A[73G [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running autoconf ... >[A[73G [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running autoheader ... >[A[73G [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running automake --add-missing --copy ... >[A[73G [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running elibtoolize in: libghemical-3.0.0/ > [32;01m*[0m Applying portage/1.2.0 patch ... > [32;01m*[0m Applying sed/1.5.6 patch ... > [32;01m*[0m Applying as-needed/2.4.2 patch ... >[34m>>>[0m Done src_prepare >[34m>>>[0m Starting builtin_saveenv >[34m>>>[0m Done builtin_saveenv >[34m>>>[0m Completed ebuild phases loadenv prepare saveenv >[34m>>>[0m Running ebuild phases loadenv configure saveenv as paludisbuild:paludisbuild... >[34m>>>[0m Starting builtin_loadenv >[34m>>>[0m Done builtin_loadenv >[34m>>>[0m Starting src_configure >econf: updating /var/tmp/paludis/sci-libs-libghemical-3.0.0/work/libghemical-3.0.0/config.guess with /usr/share/gnuconfig/config.guess >econf: updating /var/tmp/paludis/sci-libs-libghemical-3.0.0/work/libghemical-3.0.0/config.sub with /usr/share/gnuconfig/config.sub >./configure --prefix=/usr --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 --enable-shared --enable-mopac7 --enable-mpqc --disable-static --build=x86_64-pc-linux-gnu >configure: loading site script /usr/share/config.site >checking for a BSD-compatible install... /usr/bin/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking for style of include used by make... GNU >checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3 >checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++ >checking whether we are using the GNU C++ compiler... yes >checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes >checking dependency style of x86_64-pc-linux-gnu-g++... gcc3 >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E >checking how to print strings... printf >checking for a sed that does not truncate output... /bin/sed >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B >checking the name lister (/usr/bin/nm -B) interface... BSD nm >checking whether ln -s works... yes >checking the maximum length of command line arguments... 1572864 >checking whether the shell understands some XSI constructs... yes >checking whether the shell understands "+="... yes >checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop >checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop >checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r >checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-dlltool... no >checking for dlltool... no >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar >checking for archiver @FILE support... @ >checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok >checking for sysroot... no >checking for x86_64-pc-linux-gnu-mt... no >checking for mt... no >checking if : is a manifest tool... no >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E >checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64 >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes >checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes >checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... (cached) GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking for ar... /usr/bin/ar >checking for sh... /bin/sh >checking whether make sets $(MAKE)... (cached) yes >checking for x86_64-pc-linux-gnu-pkg-config... /usr/bin/x86_64-pc-linux-gnu-pkg-config >checking pkg-config is at least version 0.9.0... yes >checking whether NLS is requested... yes >checking for intltool >= 0.40.0... 0.50.2 found >checking for intltool-update... /usr/bin/intltool-update >checking for intltool-merge... /usr/bin/intltool-merge >checking for intltool-extract... /usr/bin/intltool-extract >checking for xgettext... /usr/bin/xgettext >checking for msgmerge... /usr/bin/msgmerge >checking for msgfmt... /usr/bin/msgfmt >checking for gmsgfmt... /usr/bin/gmsgfmt >checking for perl... /usr/bin/perl >checking for perl >= 5.8.1... 5.16.3 >checking for XML::Parser... ok >checking locale.h usability... yes >checking locale.h presence... yes >checking for locale.h... yes >checking for LC_MESSAGES... yes >checking libintl.h usability... yes >checking libintl.h presence... yes >checking for libintl.h... yes >checking for ngettext in libc... yes >checking for dgettext in libc... yes >checking for bind_textdomain_codeset... yes >checking for msgfmt... (cached) /usr/bin/msgfmt >checking for dcgettext... yes >checking if msgfmt accepts -c... yes >checking for gmsgfmt... (cached) /usr/bin/gmsgfmt >checking for xgettext... (cached) /usr/bin/xgettext >checking whether build environment is sane... yes >checking for acos in -lm... yes >checking for main in -lblas... no >configure: error: Cannot find blas library needed for MPQC support > >!!! ERROR in sci-libs/libghemical-3.0.0::gentoo: >!!! In econf at line 2033 >!!! econf failed > >!!! Call stack: >!!! * econf (/var/tmp/paludis/sci-libs-libghemical-3.0.0/temp/loadsaveenv:2033) >!!! * src_configure (/var/tmp/paludis/sci-libs-libghemical-3.0.0/temp/loadsaveenv:4466) >!!! * ebuild_f_configure (/usr/libexec/paludis/2/src_configure.bash:54) >!!! * ebuild_main (/usr/libexec/paludis/ebuild.bash:668) >!!! * main (/usr/libexec/paludis/ebuild.bash:691) > >diefunc: making ebuild PID 21885 exit with error >die trap: exiting with error.
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bug 466112
: 345698