* Package: sci-libs/vtk-5.10.1  * Repository: gentoo  * Maintainer: jlec@gentoo.org sci@gentoo.org,java@gentoo.org  * USE: X abi_x86_64 amd64 boost cg elibc_glibc ffmpeg java kernel_linux mpi multilib python qt4 theora threads userland_GNU  * FEATURES: sandbox * Please note that the VTK build occasionally fails when * using parallel make. Hence, if you experience a build * failure please try re-emerging with MAKEOPTS="-j1" first. * Using: sun-jdk-1.6 >>> Unpacking source... >>> Unpacking vtk-5.10.1.tar.gz to /var/tmp/portage/sci-libs/vtk-5.10.1/work >>> Source unpacked in /var/tmp/portage/sci-libs/vtk-5.10.1/work >>> Preparing source in /var/tmp/portage/sci-libs/vtk-5.10.1/work/VTK5.10.1 ... * Applying vtk-5.6.0-cg-path.patch ...  [ ok ] * Applying vtk-5.2.0-tcl-install.patch ...  [ ok ] * Applying vtk-5.8.0-R.patch ...  [ ok ] * Applying vtk-5.6.0-odbc.patch ...  [ ok ] * Applying vtk-5.6.1-ffmpeg.patch ...  [ ok ] * Applying vtk-5.6.1-libav-0.8.patch ...  [ ok ] * Applying vtk-5.10.1-tcl8.6.patch ...  [ ok ] * Applying vtk-5.10.1-ffmpeg-1.patch ...  [ ok ] >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-libs/vtk-5.10.1/work/VTK5.10.1 ... >>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/vtk-5.10.1/work/vtk-5.10.1_build" cmake --no-warn-unused-cli -C /var/tmp/portage/sci-libs/vtk-5.10.1/work/vtk-5.10.1_build/gentoo_common_config.cmake -G Unix Makefiles -DCMAKE_INSTALL_PREFIX=/usr -Wno-dev -DVTK_INSTALL_PACKAGE_DIR=/lib64/vtk-5.10 -DCMAKE_SKIP_RPATH=YES -DVTK_DIR=/var/tmp/portage/sci-libs/vtk-5.10.1/work/VTK5.10.1 -DVTK_INSTALL_LIB_DIR=/lib64/ -DVTK_DATA_ROOT:PATH=/usr/share/vtk/data -DCMAKE_INSTALL_PREFIX=/usr -DBUILD_SHARED_LIBS=ON -DVTK_USE_SYSTEM_EXPAT=ON -DVTK_USE_SYSTEM_FREETYPE=ON -DVTK_USE_SYSTEM_JPEG=ON -DVTK_USE_SYSTEM_LIBXML2=ON -DVTK_USE_SYSTEM_PNG=ON -DVTK_USE_SYSTEM_TIFF=ON -DVTK_USE_SYSTEM_ZLIB=ON -DVTK_USE_SYSTEM_HDF5=ON -DHDF5_LIBRARY=/usr/lib64 -DHDF5_INCLUDE_DIRS=/usr/include -DBUILD_TESTING=OFF -DBUILD_EXAMPLES=OFF -DVTK_USE_HYBRID=ON -DVTK_USE_GL2PS=ON -DVTK_USE_RENDERING=ON -DVTK_USE_BOOST=ON -DVTK_USE_CG_SHADERS=ON -DDOCUMENTATION_HTML_HELP=OFF -DBUILD_DOCUMENTATION=OFF -DVTK_USE_JAVA=ON -DVTK_USE_MPI=ON -DVTK_USE_MYSQL=OFF -DVTK_USE_PATENTED=OFF -DVTK_USE_POSTGRES=OFF -DVTK_USE_ODBC=OFF -DVTK_USE_QT=ON -DVTK_USE_OGGTHEORA_ENCODER=ON -DVTK_USE_FFMPEG_ENCODER=ON -DVTK_USE_TK=OFF -DVTK_USE_PARALLEL=ON -DVTK_USE_NVCONTROL=OFF -DVTK_USE_X=ON -DVTK_USE_GUISUPPORT=ON -DVTK_USE_GNU_R=OFF -DVTK_USE_CHEMISTRY=OFF -DVTK_USE_SYSTEM_OGGTHEORA=ON -DVTK_WRAP_JAVA=ON -DJAVA_AWT_INCLUDE_PATH=/opt/sun-jdk-1.6.0.43/include -DJAVA_INCLUDE_PATH:PATH=/opt/sun-jdk-1.6.0.43/include -DJAVA_INCLUDE_PATH2:PATH=/opt/sun-jdk-1.6.0.43/include/linux -DJAVA_AWT_LIBRARY=/opt/sun-jdk-1.6.0.43/jre/lib/amd64/libjawt.so -DPYTHON_INCLUDE_DIR=/usr/include/python2.7 -DPYTHON_LIBRARY=/usr/lib64/libpython2.7.so -DVTK_WRAP_PYTHON=ON -DVTK_WRAP_PYTHON_SIP=ON -DSIP_PYQT_DIR=/usr/share/sip -DSIP_INCLUDE_DIR=/usr/include/python2.7 -DPYTHON_INCLUDE_DIR=/usr/include/python2.7 -DPYTHON_LIBRARY=/usr/lib64/libpython2.7.so -DVTK_PYTHON_INCLUDE_DIR=/usr/include/python2.7 -DVTK_PYTHON_LIBRARY=/usr/lib64/libpython2.7.so -DVTK_PYTHON_SETUP_ARGS:STRING=--root=/var/tmp/portage/sci-libs/vtk-5.10.1/image/ -DVTK_USE_GUISUPPORT=ON -DVTK_USE_QVTK=ON -DVTK_USE_QVTK_OPENGL=ON -DVTK_USE_QVTK_QTOPENGL=ON -DQT_WRAP_CPP=ON -DQT_WRAP_UI=ON -DVTK_INSTALL_QT_DIR=/lib64/qt4/plugins/vtk -DDESIRED_QT_VERSION=4 -DQT_MOC_EXECUTABLE=/usr/bin/moc -DQT_UIC_EXECUTABLE=/usr/bin/uic -DQT_INCLUDE_DIR=/usr/include/qt4 -DQT_QMAKE_EXECUTABLE=/usr/bin/qmake -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_INSTALL_DO_STRIP=OFF -DCMAKE_USER_MAKE_RULES_OVERRIDE=/var/tmp/portage/sci-libs/vtk-5.10.1/work/vtk-5.10.1_build/gentoo_rules.cmake /var/tmp/portage/sci-libs/vtk-5.10.1/work/VTK5.10.1 Not searching for unused variables given on the command line. loading initial cache file /var/tmp/portage/sci-libs/vtk-5.10.1/work/vtk-5.10.1_build/gentoo_common_config.cmake -- The C compiler identification is GNU 4.6.3 -- The CXX compiler identification is GNU 4.6.3 -- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE -- Performing Test HAVE_GCC_ERROR_RETURN_TYPE - Success -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success -- Performing Test Support for 64 bit file systems -- Performing Test Support for 64 bit file systems - Success -- Performing Test VTK_CONST_REVERSE_ITERATOR_COMPARISON -- Performing Test VTK_CONST_REVERSE_ITERATOR_COMPARISON - Success -- Looking for Q_WS_X11 -- Looking for Q_WS_X11 - found -- Looking for Q_WS_WIN -- Looking for Q_WS_WIN - not found. -- Looking for Q_WS_QWS -- Looking for Q_WS_QWS - not found. -- Looking for Q_WS_MAC -- Looking for Q_WS_MAC - not found. -- Found Qt4: /usr/bin/qmake (found suitable version "4.8.4", required is "4.5.0") -- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so -- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib64/libX11.so -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of int -- Check size of int - done -- Check size of long -- Check size of long - done -- Check size of void* -- Check size of void* - done -- Check size of char -- Check size of char - done -- Check size of short -- Check size of short - done -- Check size of float -- Check size of float - done -- Check size of double -- Check size of double - done -- Looking for include file limits.h -- Looking for include file limits.h - found -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Looking for include files sys/types.h, sys/prctl.h -- Looking for include files sys/types.h, sys/prctl.h - found -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Looking for pthread_create -- Looking for pthread_create - not found. -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for C++ include iostream -- Looking for C++ include iostream - found -- Check for STD namespace -- Check for STD namespace - found -- Check for ANSI scope -- Check for ANSI scope - found -- Check for sstream -- Check for sstream - found -- Check size of long long -- Check size of long long - done -- Check size of __int64 -- Check size of __int64 - failed -- Check size of uintptr_t -- Check size of uintptr_t - done -- Checking support for C++ type bool -- Checking support for C++ type bool -- yes -- Checking signedness of char -- Checking signedness of char -- signed -- Looking for getsockname in socket -- Looking for getsockname in socket - not found -- Checking for getsockname with socklen_t -- Checking for getsockname with socklen_t -- yes -- Looking for SO_REUSEADDR -- Looking for SO_REUSEADDR - found -- Checking support for full template specialization syntax -- Checking support for full template specialization syntax -- yes -- Checking support for C++ explicit template instantiation -- Checking support for C++ explicit template instantiation -- yes -- Checking for builtin __sync_add_and_fetch -- Checking for builtin __sync_add_and_fetch -- success -- Looking for C++ include iosfwd -- Looking for C++ include iosfwd - found -- Looking for C++ include iostream.h -- Looking for C++ include iostream.h - not found -- Checking ANSI streams end-of-file bug level -- Checking ANSI streams end-of-file bug level - 1 -- Checking if ostream supports long long -- Checking if ostream supports long long -- yes -- Checking if istream supports long long -- Checking if istream supports long long -- yes -- Found ZLIB: /usr/lib64/libz.so (found version "1.2.7") -- Found HDF5: debug;/usr/lib64/libhdf5_hl.so;debug;/usr/lib64/libhdf5.so;debug;/usr/lib64/libsz.so;debug;/usr/lib64/libz.so;debug;/usr/lib64/librt.so;debug;/usr/lib64/libm.so;optimized;/usr/lib64/libhdf5_hl.so;optimized;/usr/lib64/libhdf5.so;optimized;/usr/lib64/libsz.so;optimized;/usr/lib64/libz.so;optimized;/usr/lib64/librt.so;optimized;/usr/lib64/libm.so -- Found JPEG: /usr/lib64/libjpeg.so -- Found PNG: /usr/lib64/libpng.so (found version "1.5.13") -- Found TIFF: /usr/lib64/libtiff.so (found version "4.0.2") -- Found EXPAT: /usr/lib64/libexpat.so (found version "2.1.0") -- Found LibXml2: /usr/lib64/libxml2.so (found version "2.9.0") -- Found OGGTHEORA: /usr/lib64/libogg.so -- Found OpenGL: /usr/lib64/libGL.so sandbox:stop caught signal 2 in pid 23615 sandbox:stop signal already caught and busy still cleaning up! /usr/portage/sci-libs/vtk/vtk-5.10.1.ebuild: src_configure aborted; exiting. !!! When you file a bug report, please include the following information: GENTOO_VM=sun-jdk-1.6 CLASSPATH="" JAVA_HOME="/opt/sun-jdk-1.6.0.43" JAVACFLAGS="-source 1.5 -target 1.5" COMPILER="" and of course, the output of emerge --info