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Gentoo's Bugzilla – Attachment 340508 Details for
Bug 459726
sci-biology/ncbi-tools does not respect LDFLAGS
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build log
ncbi-tools-2.2.26:20130228-150211.log (text/plain), 253.36 KB, created by
Agostino Sarubbo
on 2013-02-28 15:27:27 UTC
(
hide
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Description:
build log
Filename:
MIME Type:
Creator:
Agostino Sarubbo
Created:
2013-02-28 15:27:27 UTC
Size:
253.36 KB
patch
obsolete
> * Package: sci-biology/ncbi-tools-2.2.26 > * Repository: gentoo > * Maintainer: weaver@gentoo.org sci-biology@gentoo.org > * USE: X elibc_glibc kernel_linux ppc64 userland_GNU > * FEATURES: sandbox userpriv usersandbox > > * Please note that the NCBI toolkit (and especially the X > * applications) are known to have compilation and run-time > * problems when compiled with agressive compilation flags. The > * "-O3" flag is filtered by the ebuild on the x86 architecture if > * X support is enabled. > >>>> Unpacking source... >>>> Unpacking ncbi-tools-2.2.26.tar.gz to /var/tmp/portage/sci-biology/ncbi-tools-2.2.26/work >>>> Source unpacked in /var/tmp/portage/sci-biology/ncbi-tools-2.2.26/work >>>> Preparing source in /var/tmp/portage/sci-biology/ncbi-tools-2.2.26/work/ncbi ... > * Applying ncbi-tools-extra_vib.patch ... > [ ok ] > * Applying ncbi-tools-lop.patch ... > [ ok ] >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-biology/ncbi-tools-2.2.26/work/ncbi ... >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-biology/ncbi-tools-2.2.26/work/ncbi ... >LSB Version: n/a >Distributor ID: Gentoo >Description: Gentoo Base System release 2.1 >Release: 2.1 >Codename: n/a >libs version is: >lrwxrwxrwx 1 root root 12 Jan 8 14:07 /lib/libc.so.6 -> libc-2.15.so >the gcc version is: >Using built-in specs. >COLLECT_GCC=/usr/powerpc64-unknown-linux-gnu/gcc-bin/4.6.3/gcc >COLLECT_LTO_WRAPPER=/usr/libexec/gcc/powerpc64-unknown-linux-gnu/4.6.3/lto-wrapper >Target: powerpc64-unknown-linux-gnu >Configured with: /var/tmp/portage/sys-devel/gcc-4.6.3/work/gcc-4.6.3/configure --prefix=/usr --bindir=/usr/powerpc64-unknown-linux-gnu/gcc-bin/4.6.3 --includedir=/usr/lib/gcc/powerpc64-unknown-linux-gnu/4.6.3/include --datadir=/usr/share/gcc-data/powerpc64-unknown-linux-gnu/4.6.3 --mandir=/usr/share/gcc-data/powerpc64-unknown-linux-gnu/4.6.3/man --infodir=/usr/share/gcc-data/powerpc64-unknown-linux-gnu/4.6.3/info --with-gxx-include-dir=/usr/lib/gcc/powerpc64-unknown-linux-gnu/4.6.3/include/g++-v4 --host=powerpc64-unknown-linux-gnu --build=powerpc64-unknown-linux-gnu --disable-altivec --disable-fixed-point --without-ppl --without-cloog --enable-lto --enable-nls --without-included-gettext --with-system-zlib --enable-obsolete --disable-werror --enable-secureplt --disable-multilib --enable-libmudflap --disable-libssp --enable-libgomp --with-python-dir=/share/gcc-data/powerpc64-unknown-linux-gnu/4.6.3/python --enable-checking=release --disable-libgcj --enable-libstdcxx-time --enable-languages=c,c++,fortran --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --enable-targets=all --with-bugurl=http://bugs.gentoo.org/ --with-pkgversion='Gentoo 4.6.3 p1.11, pie-0.5.2' >Thread model: posix >gcc version 4.6.3 (Gentoo 4.6.3 p1.11, pie-0.5.2) >Motif found at /usr/include/Xm >Warning: Motif version 1.2 is recommended >OpenGL found at /usr/include/GL >platform is linux-power >Linux timberdoodle 3.2.34 #1 SMP Thu Nov 29 11:53:12 PST 2012 ppc64 POWER7 (architected) CHRP IBM,8231-E2B GNU/Linux >Disabling assert(). >BLAST version is 2.2.26 >make CFLAGS1="-DNDEBUG -O3 -D_LARGE_FILE -c " LDFLAGS1="-O3 -D_LARGE_FILES " OTHERLIBS="-lm" SHELL="/bin/sh" LCL="lnx" RAN="ranlib" AR="ar" CC="gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE" LIB30=libncbicn3d.a LIB28=libvibgif.a LIB4=libvibrant.a LIB20=libncbidesk.a LIB45=libddvlib.a VIBFLAG="-I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF" VIBLIBS="-L/usr/X11R6/lib -lXmu -lXm -Wl,-Bdynamic -lXt -lSM -lICE -lXext -lXp -lX11 -ldl" all >chmod -R ug+rw,o+r . ../include >./ln-if-absent ../corelib/tsprintf.h ../include >./ln-if-absent ../corelib/gifgen.h ../include >./ln-if-absent ../corelib/ncbi*.h ../include >./ln-if-absent ../corelib/tree*.h ../include >./ln-if-absent ../corelib/regex.h ../include >./ln-if-absent ../corelib/matrix.h ../include >./ln-if-absent ../corelib/binary.h ../include >./ln-if-absent ../corelib/morefile/*.h ../include >./ln-if-absent ../corelib/morefile/*.c . >./ln-if-absent ../link/macmet/MoreCarbonAccessors.h ../include >./ln-if-absent ../corelib/ncbilcl.lnx ../include/ncbilcl.h >./ln-if-absent ../corelib/*.c . >./ln-if-absent ../corelib/core*.h . >./ln-if-absent ../asnlib/*.h . >rm -f ../include/asn.h >mv asn.h ../include >./ln-if-absent ../asnlib/*.c . >./ln-if-absent ../connect/*.c . >./ln-if-absent ../connect/ncbi_ansi_ext.h . >./ln-if-absent ../connect/ncbi_assert.h . >./ln-if-absent ../connect/ncbi_priv.h . >./ln-if-absent ../connect/ncbi_comm.h . >./ln-if-absent ../connect/ncbi_config.h . >./ln-if-absent ../connect/ncbi_connssl.h . >./ln-if-absent ../connect/ncbi_lbsm.h . >make: [copy] Error 1 (ignored) >./ln-if-absent ../connect/ncbi_lbsm_ipc.h . >make: [copy] Error 1 (ignored) >./ln-if-absent ../connect/ncbi_host_infop.h . >./ln-if-absent ../connect/ncbi_server_infop.h . >./ln-if-absent ../connect/ncbi_servicep.h . >./ln-if-absent ../connect/ncbi_socketp.h . >./ln-if-absent ../connect/ncbi_dispd.h . >./ln-if-absent ../connect/ncbi_lbsmd.h . >./ln-if-absent ../connect/ncbi_local.h . >./ln-if-absent ../connect/ncbi_lb.h . >./ln-if-absent ../connect/ncbi_version.h . >./ln-if-absent ../connect/ncbi_base64.h . >./ln-if-absent ../connect/urlquery.h ../include >mkdir ../include/connect >chmod ug+rw,o+r ../include/connect >cp -fp ../connect/ncbi_*.h ../connect/connect_export.h ../include/connect >./ln-if-absent ../util/tables/*.c . >mkdir -p ../include/util/tables >cp -fp ../util/tables/*.h ../include/util/tables >./ln-if-absent ../util/creaders/*.c . >mkdir -p ../include/util/creaders >cp -fp ../util/creaders/*.h ../include/util/creaders >./ln-if-absent ../ctools/*.c . >./ln-if-absent ../ctools/*.h . >mkdir ../include/ctools >chmod ug+rw,o+r ../include/ctools >cp -fp ../ctools/*.h ../include/ctools >./ln-if-absent ../object/*.c . >./ln-if-absent ../object/*.h ../include >./ln-if-absent ../access/*.c . >./ln-if-absent ../access/*.h ../include >./ln-if-absent ../asnstat/*.h ../include >./ln-if-absent ../api/*.h ../include >./ln-if-absent ../api/*.c . >./ln-if-absent ../api/*.inc . >./ln-if-absent ../cdromlib/*.h ../include >./ln-if-absent ../cdromlib/*.c . >./ln-if-absent ../vibrant/*.h ../include >./ln-if-absent ../vibrant/*.c . >./ln-if-absent ../desktop/*.h ../include >./ln-if-absent ../desktop/*.c . >./ln-if-absent ../biostruc/*.h ../include >./ln-if-absent ../biostruc/*.c . >./ln-if-absent ../biostruc/cdd/*.h ../include >./ln-if-absent ../biostruc/cdd/*.c . >./ln-if-absent ../biostruc/cn3d/*.h ../include >./ln-if-absent ../biostruc/cn3d/*.c . >./ln-if-absent ../tools/*.h ../include >./ln-if-absent ../tools/*.c . >./ln-if-absent ../cn3d/*.h ../include >./ln-if-absent ../cn3d/*.c . >./ln-if-absent ../gif/*.c . >./ln-if-absent ../gif/*.h ../include >./ln-if-absent ../ddv/*.h ../include >./ln-if-absent ../ddv/*.c . >./ln-if-absent ../regexp/*.c . >./ln-if-absent ../regexp/*.h ../include >./ln-if-absent ../internal/compr/*.c . >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../internal/compr/*.h ../include >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../internal/libindx/*.c . >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../internal/libindx/*.h ../include >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../internal/libpars/*.c . >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../internal/libpars/*.h ../include >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../internal/ideogram/*.c . >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../internal/ideogram/*.dat . >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../internal/ideogram/ideochr*.h ../include >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../internal/ideogram/ideoorgs.h . >make: [copy] Error 1 (ignored) >./ln-if-absent ../internal/ccap/*.c . >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../internal/ccap/*.dat . >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../internal/ccap/*.h ../include >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ncbidraw.c ncbidrwg.c >./ln-if-absent ncbithr.c ncbithrs.c >./ln-if-absent ../network/nsclilib/*.h ../include >./ln-if-absent ../network/blast3/client/*.h ../include >./ln-if-absent ../network/id1arch/*.h ../include >./ln-if-absent ../network/id2arch/*.h ../include >mkdir -p ../include/algo/blast/core >./ln-if-absent ../algo/blast/core/*.c . >./ln-if-absent ../algo/blast/core/*.h . >./ln-if-absent ../algo/blast/core/*.inl . >cp -fp ../algo/blast/core/*.h ../include/algo/blast/core >mkdir -p ../include/algo/blast/composition_adjustment >./ln-if-absent ../algo/blast/composition_adjustment/*.c . >./ln-if-absent ../algo/blast/composition_adjustment/*.h ../include >cp -fp ../algo/blast/composition_adjustment/*.h \ > ../include/algo/blast/composition_adjustment >mkdir -p ../include/algo/blast/api >./ln-if-absent ../algo/blast/api/*.c . >cp -fp ../algo/blast/api/*.h ../include/algo/blast/api >chmod -R ug+rw,o+r . >echo Waiting...go >Waiting...go >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbithr.c >cp -p ncbithr.o ../lib >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbimain.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbibs.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF wwwutils.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbierr.c >ncbierr.c: In function 'Nlm_ErrLogPrintStr': >ncbierr.c:631:21: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result [-Wunused-result] >ncbierr.c:638:21: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result [-Wunused-result] >ncbierr.c:658:17: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result [-Wunused-result] >In file included from /usr/include/string.h:642:0, > from ../include/ncbilcl.h:156, > from ../include/ncbi.h:57, > from corepriv.h:85, > from ncbierr.c:235: >In function 'strncat', > inlined from 'ErrMsgRoot_fopen.isra.1' at ncbierr.c:955:20: >/usr/include/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbienv.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbifile.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbiprop.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbimath.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbimem.c >ncbimem.c:181:0: warning: "__USE_BSD" redefined [enabled by default] >/usr/include/features.h:293:0: note: this is the location of the previous definition >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbimisc.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbimsg.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbistr.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbisgml.c >In file included from /usr/include/string.h:642:0, > from ../include/ncbilcl.h:156, > from ../include/ncbi.h:57, > from ncbisgml.c:80: >In function 'strncat', > inlined from 'Nlm_Sgml2Ascii' at ncbisgml.c:265:12: >/usr/include/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] >In function 'strncat', > inlined from 'Nlm_Sgml2Ascii' at ncbisgml.c:284:12: >/usr/include/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] >In function 'strncat', > inlined from 'Nlm_Sgml2AsciiLen' at ncbisgml.c:340:12: >/usr/include/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] >In function 'strncat', > inlined from 'Nlm_Sgml2AsciiLen' at ncbisgml.c:354:12: >/usr/include/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbitime.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbilang.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF asnbufo.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF asndebin.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF asnenbin.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF asngen.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF asnio.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF asnlex.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF asnlext.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF asnout.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF asnprint.c >asnprint.c: In function 'AsnPrintTreeType': >asnprint.c:2572:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF asntypes.c >asntypes.c: In function 'AsnTreeLoad': >asntypes.c:1274:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >asntypes.c:1288:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >asntypes.c:1301:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >asntypes.c:1333:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF asngenob.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF gifgen.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF togif.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNCBI_NOTHREADS_AVAIL -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbithrs.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DHAVE_STRING_H -DREGEX_MALLOC regex.c >regex.c: In function 're_match_2': >regex.c:3762:31: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] >regex.c:3762:54: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] >regex.c:3768:19: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] >regex.c:3768:19: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] >regex.c:3915:11: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] >regex.c:3915:11: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] >regex.c:3968:11: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] >regex.c:3968:11: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] >regex.c:4074:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] >regex.c:4074:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] >regex.c:4107:11: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] >regex.c:4107:11: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] >regex.c:4120:11: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] >regex.c:4120:11: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] >regex.c:4288:11: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] >regex.c:4288:11: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF tsprintf.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbiargs.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF tree.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF matrix.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbi_socket.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbi_buffer.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbi_types.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbi_core.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbi_core_c.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbi_util.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbi_priv.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbi_ansi_ext.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbi_connection.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbi_connector.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbi_connutil.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbi_file_connector.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbi_heapmgr.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbi_http_connector.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbi_memory_connector.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbi_lbsmd_stub.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbi_host_info.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbi_server_info.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbi_service.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbi_version.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbi_service_connector.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbi_ftp_connector.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbi_dispd.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbi_lb.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbi_local.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbi_socket_connector.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF urlquery.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF binary.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbi_sendmail.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbi_base64.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF asn_connection.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF raw_scoremat.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF drwnflpt.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF drwnfspc.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF drwnmfls.c >rm -f libncbi.a >ar cru libncbi.a ncbimain.o ncbibs.o wwwutils.o ncbierr.o ncbienv.o ncbifile.o ncbiprop.o ncbimath.o ncbimem.o ncbimisc.o ncbimsg.o ncbistr.o ncbisgml.o ncbitime.o ncbilang.o asnbufo.o asndebin.o asnenbin.o asngen.o asnio.o asnlex.o asnlext.o asnout.o asnprint.o asntypes.o asngenob.o gifgen.o togif.o ncbithrs.o regex.o tsprintf.o ncbiargs.o tree.o matrix.o ncbi_socket.o ncbi_buffer.o ncbi_types.o ncbi_core.o ncbi_core_c.o ncbi_util.o ncbi_priv.o ncbi_ansi_ext.o ncbi_connection.o ncbi_connector.o ncbi_connutil.o ncbi_file_connector.o ncbi_heapmgr.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_lbsmd_stub.o ncbi_host_info.o ncbi_server_info.o ncbi_service.o ncbi_version.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_dispd.o ncbi_lb.o ncbi_local.o ncbi_socket_connector.o urlquery.o binary.o ncbi_sendmail.o ncbi_base64.o asn_connection.o raw_scoremat.o drwnflpt.o drwnfspc.o drwnmfls.o >cp -p libncbi.a ../lib >ranlib ../lib/libncbi.a >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objacces.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objalign.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objall.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objbibli.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objfeat.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objgen.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objloc.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objmedli.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objpub.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objres.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objscoremat.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objseq.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objblock.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objcode.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objsset.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objsub.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objprt.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objfdef.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objalignloc.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objtable.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objpubme.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objmdrs.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objproj.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objgbseq.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objtseq.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objinsdseq.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objmacro.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objent2.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ent2api.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF pmfapi.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objtax3.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF tax3api.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objegkludge.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objentgene.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objmla2.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF mla2api.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF qblastapi.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF vecscnapi.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objmim.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objvalid.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF mimapi.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF cddapi.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF seqport.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF sequtil.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF prtutil.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF simple.c >In file included from simple.c:69:0: >../include/all.h:7078:0: warning: "RNA_QUAL" redefined [enabled by default] >../include/all.h:5651:0: note: this is the location of the previous definition >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF tofasta.c >tofasta.c: In function 'FastaToSeqEntryInternalExEx': >tofasta.c:2453:14: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] >tofasta.c:2478:18: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF tofile.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF tomedlin.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF valid.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF valapi.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF alignmgr.c >alignmgr.c: In function 'AlnMgrIndexParentSA': >alignmgr.c:1603:19: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF aliparse.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF aliread.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF alignval.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF sqnutil1.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF sqnutil2.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF sqnutil3.c >sqnutil3.c: In function 'RmvMrnaOverlappingPseudoGene': >sqnutil3.c:7213:11: warning: assignment from incompatible pointer type [enabled by default] >sqnutil3.c: In function 'FillInMissingTraces': >sqnutil3.c:29436:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF sqnutil4.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF subutil.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF edutil.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF asn2ff1.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF asn2ff2.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF asn2ff3.c >asn2ff3.c: In function 'Add_gene_id': >asn2ff3.c:3303:2: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'Nlm_VoidPtr' [-Wformat] >asn2ff3.c: In function 'Add_trid': >asn2ff3.c:3728:4: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] >asn2ff3.c: In function 'AddPID': >asn2ff3.c:3771:5: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF asn2ff4.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF asn2ff5.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF asn2ff6.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF asn2gnb1.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF asn2gnb2.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF asn2gnb3.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF asn2gnb4.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF asn2gnb5.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF asn2gnb6.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ftusrstr.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF gbfeat.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF gbftglob.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF gbparint.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF utilpars.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF utilpub.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ffprint.c >ffprint.c: In function 'ff_print_string': >ffprint.c:408:10: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result [-Wunused-result] >ffprint.c:410:10: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result [-Wunused-result] >ffprint.c:412:9: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result [-Wunused-result] >ffprint.c:416:8: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result [-Wunused-result] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF wprint.c >wprint.c: In function 'www_featkey': >wprint.c:435:8: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Nlm_Int4' [-Wformat] >wprint.c: In function 'www_muid': >wprint.c:479:13: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Nlm_Int4' [-Wformat] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF satutil.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF seqmgr.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objmgr.c >objmgr.c: In function 'ObjMgrDump': >objmgr.c:2931:13: warning: format '%u' expects argument of type 'unsigned int', but argument 11 has type 'long unsigned int' [-Wformat] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF gather.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF accmmdbs.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF acccn3ds.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF lsqfetch.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF findrepl.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF codon.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF jzcoll.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF jzmisc.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF maputil.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF mconsist.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF macroapi.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF salpedit.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF salpstat.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF salpacc.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF salprop.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF salsap.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF salstruc.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF salutil.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF udvseq.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blocks.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF pgppop.c >pgppop.c: In function 'DDV_GetFullGapFASTAforIdxAli': >pgppop.c:2997:5: warning: format not a string literal and no format arguments [-Wformat-security] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF samutil.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ddvcolor.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF viewmgr.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ddvcreate.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF jsavlt.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF needleman.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF txalign.c >txalign.c: In function 'DrawTextToBuffer': >txalign.c:1769:8: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] >txalign.c:1769:8: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat] >txalign.c:1770:8: warning: format not a string literal and no format arguments [-Wformat-security] >txalign.c:1776:6: warning: format not a string literal and no format arguments [-Wformat-security] >txalign.c:1793:45: warning: format not a string literal and no format arguments [-Wformat-security] >txalign.c:1802:45: warning: format not a string literal and no format arguments [-Wformat-security] >txalign.c:1818:7: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat] >txalign.c:1819:7: warning: format not a string literal and no format arguments [-Wformat-security] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF fdlobj.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF alignmgr2.c >alignmgr2.c: In function 'AlnMgr2PrintSeqAlign': >alignmgr2.c:5619:16: warning: format not a string literal and no format arguments [-Wformat-security] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF alnread.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF acerdapi.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF aceread.c >rm -f libncbiobj.a >ar cru libncbiobj.a objacces.o objalign.o objall.o objbibli.o objfeat.o objgen.o objloc.o objmedli.o objpub.o objres.o objscoremat.o objseq.o objblock.o objcode.o objsset.o objsub.o objprt.o objfdef.o objalignloc.o objtable.o objpubme.o objmdrs.o objproj.o objgbseq.o objtseq.o objinsdseq.o objmacro.o objent2.o ent2api.o pmfapi.o objtax3.o tax3api.o objegkludge.o objentgene.o objmla2.o mla2api.o qblastapi.o vecscnapi.o objmim.o objvalid.o mimapi.o cddapi.o seqport.o sequtil.o prtutil.o simple.o tofasta.o tofile.o tomedlin.o valid.o valapi.o alignmgr.o aliparse.o aliread.o alignval.o sqnutil1.o sqnutil2.o sqnutil3.o sqnutil4.o subutil.o edutil.o asn2ff1.o asn2ff2.o asn2ff3.o asn2ff4.o asn2ff5.o asn2ff6.o asn2gnb1.o asn2gnb2.o asn2gnb3.o asn2gnb4.o asn2gnb5.o asn2gnb6.o ftusrstr.o gbfeat.o gbftglob.o gbparint.o utilpars.o utilpub.o ffprint.o wprint.o satutil.o seqmgr.o objmgr.o gather.o accmmdbs.o acccn3ds.o lsqfetch.o findrepl.o codon.o jzcoll.o jzmisc.o maputil.o mconsist.o macroapi.o salpedit.o salpstat.o salpacc.o salprop.o salsap.o salstruc.o salutil.o udvseq.o blocks.o pgppop.o samutil.o ddvcolor.o viewmgr.o ddvcreate.o jsavlt.o needleman.o txalign.o fdlobj.o alignmgr2.o alnread.o acerdapi.o aceread.o >cp -p libncbiobj.a ../lib >ranlib ../lib/libncbiobj.a >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF cdentrez.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF cdromlib.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF cdnewlib.c >cdnewlib.c: In function 'cd3_CdDocAsnOpen': >cdnewlib.c:1342:12: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] >cdnewlib.c: In function 'UidIndex_ReadPage': >cdnewlib.c:1937:10: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] >cdnewlib.c:1945:10: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] >In file included from /usr/include/string.h:642:0, > from ../include/ncbilcl.h:156, > from ../include/ncbi.h:57, > from ../include/asn.h:54, > from ../include/objacces.h:64, > from ../include/cdromlib.h:71, > from cdnewlib.c:208: >In function 'strncat', > inlined from 'CdDevice_FileBuildPath.part.16' at cdnewlib.c:2679:12: >/usr/include/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] >In function 'strncat', > inlined from 'CdDevice_Init.part.20' at cdnewlib.c:2751:10: >/usr/include/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] >In function 'strncat', > inlined from 'CdDevice_Init.part.20' at cdnewlib.c:2769:13: >/usr/include/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF casn.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF cdconfig.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objentr.c >rm -f libncbicdr.a >ar cru libncbicdr.a cdentrez.o cdromlib.o cdnewlib.o casn.o cdconfig.o objentr.o >cp -p libncbicdr.a ../lib >ranlib ../lib/libncbicdr.a >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF vibbutns.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF vibextra.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF vibfiles.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF vibforms.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF vibgroup.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF viblists.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF vibmenus.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF vibprmpt.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF vibsbars.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF vibslate.c >vibslate.c: In function 'Nlm_SelectSlate': >vibslate.c:1515:5: warning: missing sentinel in function call [-Wformat] >vibslate.c:1517:5: warning: missing sentinel in function call [-Wformat] >vibslate.c: In function 'Nlm_SelectPanel': >vibslate.c:1544:3: warning: missing sentinel in function call [-Wformat] >vibslate.c:1546:3: warning: missing sentinel in function call [-Wformat] >vibslate.c: In function 'Nlm_SlateClickCallback': >vibslate.c:2157:3: warning: missing sentinel in function call [-Wformat] >vibslate.c:2159:3: warning: missing sentinel in function call [-Wformat] >vibslate.c: In function 'Nlm_SlateInputCallback': >vibslate.c:2313:7: warning: missing sentinel in function call [-Wformat] >vibslate.c:2315:7: warning: missing sentinel in function call [-Wformat] >vibslate.c: In function 'Nlm_SlateDrawCallback': >vibslate.c:2359:3: warning: missing sentinel in function call [-Wformat] >vibslate.c:2361:3: warning: missing sentinel in function call [-Wformat] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF vibtexts.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF vibutils.c >vibutils.c: In function 'Nlm_VibMessageHook': >vibutils.c:776:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF vibwndws.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF vibmain.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbidraw.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF drawing.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF mapping.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF picture.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF viewer.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF document.c >document.c: In function 'Nlm_PrintDocument': >document.c:4413:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] >document.c:4417:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF table.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF palette.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF diagnost.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF image.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF pictur3d.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF prim3d1.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF prim3d2.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF prim3d3.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF prim3d4.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF prim3d5.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF viewer3d.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF vibmouse.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF netscape.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF imagelst.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF treeview.c >treeview.c: In function 'getNodeLength': >treeview.c:177:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] >treeview.c: In function 'getIconId': >treeview.c:187:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF shim3d.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF odlbox.c >rm -f libvibrant.a >ar cru libvibrant.a vibbutns.o vibextra.o vibfiles.o vibforms.o vibgroup.o viblists.o vibmenus.o vibprmpt.o vibsbars.o vibslate.o vibtexts.o vibutils.o vibwndws.o vibmain.o ncbidraw.o drawing.o mapping.o picture.o viewer.o document.o table.o palette.o diagnost.o image.o pictur3d.o prim3d1.o prim3d2.o prim3d3.o prim3d4.o prim3d5.o viewer3d.o vibmouse.o netscape.o imagelst.o treeview.o shim3d.o odlbox.o >cp -p libvibrant.a ../lib >ranlib ../lib/libvibrant.a >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF accentr.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF accutils.c >rm -f libncbiacc.a >ar cru libncbiacc.a accentr.o accutils.o >cp -p libncbiacc.a ../lib >ranlib ../lib/libncbiacc.a >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF drawseq.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF dotmatrx.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF fea2seg.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF fstyle.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF smdlg1.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF smdlg2.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF smdlg3.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF smtools.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF styleman.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF stylemui.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF glbpic.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF layout.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF saldist.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF saled.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF salfiles.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF salpanel.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF salparam.c >salparam.c: In function 'FileInProc': >salparam.c:782:16: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF salsa.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF seqfltr.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF seqgraph.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF seqgrphx.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF seqmtrx.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF seqpcc.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF seqanal.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF aacomp.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF seqscrl.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF valdlg.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF vsm.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF vsmfile.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF vsmutil.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF udvgraph.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF udvopen.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF udvpanel.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF dotvibrant.c >dotvibrant.c: In function 'DOT_SVPopulateDiagViewer': >dotvibrant.c:2876:11: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF dlgutil1.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF dlgutil2.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF e2trmlst.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF e2docsum.c >e2docsum.c: In function 'FormatDocsum': >e2docsum.c:1020:5: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Uint4' [-Wformat] >e2docsum.c: In function 'LaunchStructureViewer': >e2docsum.c:2981:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] >e2docsum.c: In function 'LaunchSequin': >e2docsum.c:2838:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF asn2graphic.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF medview.c >medview.c: In function 'PrintMedlineViewForm': >medview.c:588:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF bspview.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF gbfview.c >gbfview.c: In function 'ReleaseIcon': >gbfview.c:667:28: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] >gbfview.c: In function 'PrintFlatFileFastaOrAsn': >gbfview.c:2491:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF gphview.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF gphdraw.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF gxydraw.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF gtrdraw.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF seqpanel.c >seqpanel.c: In function 'WriteAlignmentInterleaveToFileEx': >seqpanel.c:8664:15: warning: format not a string literal and no format arguments [-Wformat-security] >seqpanel.c: In function 'WriteAlignmentContiguousToFile': >seqpanel.c:8760:13: warning: format not a string literal and no format arguments [-Wformat-security] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ingengraph.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ingenext.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ingenwin.c >ingenwin.c: In function 'Ing_ShowComplexity': >ingenwin.c:1270:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF macrodlg.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF biosrc.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF cdrgn.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF import.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF pubdesc.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF seqsub.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF mapgene.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF prtgene.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF salogif.c >salogif.c: In function 'PrintImageMapForGlobal': >salogif.c:291:17: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] >rm -f libncbidesk.a >ar cru libncbidesk.a drawseq.o dotmatrx.o fea2seg.o fstyle.o smdlg1.o smdlg2.o smdlg3.o smtools.o styleman.o stylemui.o glbpic.o layout.o saldist.o saled.o salfiles.o salpanel.o salparam.o salsa.o seqfltr.o seqgraph.o seqgrphx.o seqmtrx.o seqpcc.o seqanal.o aacomp.o seqscrl.o valdlg.o vsm.o vsmfile.o vsmutil.o udvgraph.o udvopen.o udvpanel.o dotvibrant.o dlgutil1.o dlgutil2.o e2trmlst.o e2docsum.o asn2graphic.o medview.o bspview.o gbfview.o gphview.o gphdraw.o gxydraw.o gtrdraw.o seqpanel.o ingengraph.o ingenext.o ingenwin.o macrodlg.o biosrc.o cdrgn.o import.o pubdesc.o seqsub.o mapgene.o prtgene.o salogif.o >cp -p libncbidesk.a ../lib >ranlib ../lib/libncbidesk.a >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ddvclick.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ddvgraph.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ddvopen.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ddvpanel.c >rm -f libddvlib.a >ar cru libddvlib.a ddvclick.o ddvgraph.o ddvopen.o ddvpanel.o >cp -p libddvlib.a ../lib >ranlib ../lib/libddvlib.a >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF corematx.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF dvncode.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objmmdb1.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objmmdb2.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objmmdb3.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objcn3d.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF mmdbapi.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF mmdbapi1.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF mmdbapi2.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF mmdbapi3.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF mmdbapi4.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF mmdbentr.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF vastsubs.c >vastsubs.c: In function 'LoadSubsetTable': >vastsubs.c:212:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >vastsubs.c:239:8: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >vastsubs.c:258:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >vastsubs.c:287:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >vastsubs.c:296:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >vastsubs.c:302:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >vastsubs.c:304:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF prunebsc.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objcdd.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF cddutil.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF cddposutil.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF objmime.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF strucapi.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF thrdalgs.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF thrdatd.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF thrdbwfi.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF thrdcpal.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF thrdcpll.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF thrdcprl.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF thrdcxei.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF thrddgri.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF thrdrsmp.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF thrdsal0.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF thrdsalr.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF thrdsalu.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF thrdsgoi.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF thrdslo0.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF thrdslor.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF thrdslou.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF thrdspci.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF thrdspea.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF thrdspel.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF thrdspni.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF thrdttb0.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF thrdttbi.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF thrdzsc.c >rm -f libncbimmdb.a >ar cru libncbimmdb.a corematx.o dvncode.o objmmdb1.o objmmdb2.o objmmdb3.o objcn3d.o mmdbapi.o mmdbapi1.o mmdbapi2.o mmdbapi3.o mmdbapi4.o mmdbentr.o vastsubs.o prunebsc.o objcdd.o cddutil.o cddposutil.o objmime.o strucapi.o thrdalgs.o thrdatd.o thrdbwfi.o thrdcpal.o thrdcpll.o thrdcprl.o thrdcxei.o thrddgri.o thrdrsmp.o thrdsal0.o thrdsalr.o thrdsalu.o thrdsgoi.o thrdslo0.o thrdslor.o thrdslou.o thrdspci.o thrdspea.o thrdspel.o thrdspni.o thrdttb0.o thrdttbi.o thrdzsc.o >cp -p libncbimmdb.a ../lib >ranlib ../lib/libncbimmdb.a >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF csim.c >csim.c: In function 'set_pam_file': >csim.c:227:18: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF db_slist.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF dust.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_dust.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF falign.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF g_any.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF sim2.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF sim3.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF sim4.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF simutil.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF slist.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF sec.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF tfuns.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF toasn3.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF toporg.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF pobutil.c >In file included from /usr/include/string.h:642:0, > from ../include/ncbilcl.h:156, > from ../include/ncbi.h:57, > from ../include/asn.h:54, > from ../include/objsset.h:48, > from ../include/sequtil.h:43, > from ../include/seqport.h:47, > from ../include/pobutil.h:7, > from pobutil.c:3: >In function 'memset', > inlined from 'FindHumanRepeats' at pobutil.c:2380:8: >/usr/include/bits/string3.h:82:30: warning: call to '__warn_memset_zero_len' declared with attribute warning: memset used with constant zero length parameter; this could be due to transposed parameters [enabled by default] >In function 'memset', > inlined from 'FindHumanRepeats' at pobutil.c:2381:8: >/usr/include/bits/string3.h:82:30: warning: call to '__warn_memset_zero_len' declared with attribute warning: memset used with constant zero length parameter; this could be due to transposed parameters [enabled by default] >In function 'memset', > inlined from 'AluFeat' at pobutil.c:2380:8: >/usr/include/bits/string3.h:82:30: warning: call to '__warn_memset_zero_len' declared with attribute warning: memset used with constant zero length parameter; this could be due to transposed parameters [enabled by default] >In function 'memset', > inlined from 'AluFeat' at pobutil.c:2381:8: >/usr/include/bits/string3.h:82:30: warning: call to '__warn_memset_zero_len' declared with attribute warning: memset used with constant zero length parameter; this could be due to transposed parameters [enabled by default] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF stsutil.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF suggadj.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF suggest.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF suggslp.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blastutl.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blastool.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blastconcat.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF splutil.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF gapxdrop.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF bandalg0.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF bandalg1.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF bandalg2.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF bandalg3.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF bandalg4.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF bandalg5.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF bandalgn.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blastkar.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF actutils.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF posit.c >posit.c: In function 'posFindAlignmentDimensions': >posit.c:3064:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] >posit.c:3070:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] >posit.c:3079:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] >posit.c:3086:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] >posit.c: In function 'posPreprocessAlignment': >posit.c:3137:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] >posit.c:3152:12: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] >posit.c: In function 'posReadAlignment': >posit.c:3253:7: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF lookup.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF readdb.c >readdb.c: In function 'readdb_read_alias_file': >readdb.c:3150:17: warning: format '%lld' expects argument of type 'long long int *', but argument 3 has type 'Nlm_Int8 *' [-Wformat] >readdb.c: In function 'FDBCleanUpInProgress': >readdb.c:8100:9: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat] >readdb.c: In function 'ScanDIFile': >readdb.c:11662:17: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'int' [-Wformat] >readdb.c:11662:17: warning: format '%d' expects argument of type 'int', but argument 4 has type 'Nlm_CharPtr' [-Wformat] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbisam.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbisort.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF salign.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF salptool.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF urkutil.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF urkpcc.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF urkptpf.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF urkepi.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF urkfltr.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF urkdust.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF urksigu.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF seg.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF urkbias.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF urkcnsrt.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF urktree.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF pseed3.c >pseed3.c: In function 'PGPOutTextMessages': >pseed3.c:212:15: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result [-Wunused-result] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF pattern1.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF impatool.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF posit2.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF mbalign.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF vecscrn.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF mblast.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF rpsutil.c >rpsutil.c: In function 'getAuxInformation': >rpsutil.c:398:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >rpsutil.c:404:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >rpsutil.c:405:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >rpsutil.c:406:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >rpsutil.c:407:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >rpsutil.c:408:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >rpsutil.c:409:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >rpsutil.c:410:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >rpsutil.c:415:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >rpsutil.c:416:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF kappa.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF xmlblast.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF bxmlobj.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF dotseq.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF spidey.c >spidey.c: In function 'SPI_PrintResult': >spidey.c:2091:23: warning: format not a string literal and no format arguments [-Wformat-security] >spidey.c: In function 'SPI_PrintHerdResult': >spidey.c:2420:25: warning: format not a string literal and no format arguments [-Wformat-security] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF motif.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blfmtutl.c >rm -f libncbitool.a >ar cru libncbitool.a csim.o db_slist.o dust.o blast_dust.o falign.o g_any.o sim2.o sim3.o sim4.o simutil.o slist.o sec.o tfuns.o toasn3.o toporg.o pobutil.o stsutil.o suggadj.o suggest.o suggslp.o blast.o blastutl.o blastool.o blastconcat.o splutil.o gapxdrop.o bandalg0.o bandalg1.o bandalg2.o bandalg3.o bandalg4.o bandalg5.o bandalgn.o blastkar.o actutils.o posit.o lookup.o readdb.o ncbisam.o ncbisort.o salign.o salptool.o urkutil.o urkpcc.o urkptpf.o urkepi.o urkfltr.o urkdust.o urksigu.o seg.o urkbias.o urkcnsrt.o urktree.o pseed3.o pattern1.o impatool.o posit2.o mbalign.o vecscrn.o mblast.o rpsutil.o kappa.o xmlblast.o bxmlobj.o dotseq.o spidey.o motif.o blfmtutl.o >cp -p libncbitool.a ../lib >ranlib ../lib/libncbitool.a >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF matrix_frequency_data.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF compo_mode_condition.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF composition_adjustment.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF nlm_linear_algebra.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF optimize_target_freq.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF compo_heap.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF smith_waterman.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF redo_alignment.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF unified_pvalues.c >rm -f libblastcompadj.a >ar cru libblastcompadj.a matrix_frequency_data.o compo_mode_condition.o composition_adjustment.o nlm_linear_algebra.o optimize_target_freq.o compo_heap.o smith_waterman.o redo_alignment.o unified_pvalues.o >cp -p libblastcompadj.a ../lib >ranlib ../lib/libblastcompadj.a >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF gdfontg.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF gdfontmb.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF gdfontt.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF pictogif.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF gdfontl.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF gdfonts.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DWIN_GIF -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbidrwg.c >rm -f libvibgif.a >ar cru libvibgif.a gdfontg.o gdfontmb.o gdfontt.o pictogif.o gdfontl.o gdfonts.o ncbidrwg.o drawing.o mapping.o picture.o ncbimain.o >cp -p libvibgif.a ../lib >ranlib ../lib/libvibgif.a >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF algorend.c >algorend.c: In function 'Cn3D_ColSeqCons': >algorend.c:1795:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF cn3dmsel.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF cn3dopen.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF cn3dsave.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF cn3dxprt.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF cn3dwin.c >cn3dwin.c: In function 'Cn3D_Menus': >cn3dwin.c:2131:11: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF cn3dentr.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF cn3dmsg.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF cn3dmatn.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF cn3dmodl.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF cn3dshim.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF cn3dmesh.c >cn3dmesh.c: In function 'Cn3D_MeshAcceptProc': >cn3dmesh.c:111:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >cn3dmesh.c:119:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >cn3dmesh.c:129:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >cn3dmesh.c:133:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF cn3dstyl.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF seqcons.c >rm -f libncbicn3d.a >ar cru libncbicn3d.a algorend.o cn3dmsel.o cn3dopen.o cn3dsave.o cn3dxprt.o cn3dwin.o cn3dentr.o cn3dmsg.o cn3dmatn.o cn3dmodl.o cn3dshim.o cn3dmesh.o cn3dstyl.o seqcons.o >cp -p libncbicn3d.a ../lib >ranlib ../lib/libncbicn3d.a >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF chartables.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF get.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF maketables.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF pcre.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF pcreposix.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF study.c >rm -f libregexp.a >ar cru libregexp.a chartables.o get.o maketables.o pcre.o pcreposix.o study.o >cp -p libregexp.a ../lib >ranlib ../lib/libregexp.a >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF aa_ungapped.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_diagnostics.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_engine.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_extend.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_filter.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_gapalign.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_hits.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_itree.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_lookup.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_message.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_options.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_seg.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_seqsrc.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_sw.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_setup.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_stat.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_traceback.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_util.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF gapinfo.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF greedy_align.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF link_hsps.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF lookup_wrap.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF na_ungapped.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbi_math.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ncbi_std.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF pattern.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF phi_extend.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF phi_lookup.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF lookup_util.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_encoding.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_psi.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_psi_priv.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_kappa.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF matrix_freq_ratios.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_hspstream.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_parameters.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_posit.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF phi_gapalign.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_program.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_query_info.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_tune.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_aalookup.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_nalookup.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_aascan.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_nascan.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_dynarray.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF split_query.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF gencode_singleton.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF index_ungapped.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF hspfilter_collector.c >rm -f libblast.a >ar cru libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_itree.o blast_lookup.o blast_message.o blast_options.o blast_seg.o blast_seqsrc.o blast_sw.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o link_hsps.o lookup_wrap.o na_ungapped.o ncbi_math.o ncbi_std.o pattern.o phi_extend.o phi_lookup.o lookup_util.o blast_encoding.o blast_psi.o blast_psi_priv.o blast_kappa.o matrix_freq_ratios.o blast_hspstream.o blast_parameters.o blast_posit.o phi_gapalign.o blast_program.o blast_query_info.o blast_tune.o blast_aalookup.o blast_nalookup.o blast_aascan.o blast_nascan.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o hspfilter_collector.o >cp -p libblast.a ../lib >ranlib ../lib/libblast.a >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_api.c >blast_api.c: In function 's_BlastRPSInfoInit': >blast_api.c:149:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >blast_api.c:151:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >blast_api.c:152:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >blast_api.c:153:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >blast_api.c:154:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >blast_api.c:155:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >blast_api.c:156:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >blast_api.c:157:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >blast_api.c:161:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >blast_api.c:162:13: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_input.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_format.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_mtlock.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_options_api.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_prelim.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_returns.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_seq.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_seqalign.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_tabular.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF repeats_filter.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF seqsrc_multiseq.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF seqsrc_readdb.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF twoseq_api.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF dust_filter.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF blast_message_api.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF hspfilter_queue.c >rm -f libblastapi.a >ar cru libblastapi.a blast_api.o blast_input.o blast_format.o blast_mtlock.o blast_options_api.o blast_prelim.o blast_returns.o blast_seq.o blast_seqalign.o blast_tabular.o repeats_filter.o seqsrc_multiseq.o seqsrc_readdb.o twoseq_api.o dust_filter.o blast_message_api.o hspfilter_queue.o >cp -p libblastapi.a ../lib >ranlib ../lib/libblastapi.a >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o asntool -O3 -D_LARGE_FILES -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -L../lib asntool.c asncode.c ../lib/libncbi.a -lm >asncode.c: In function 'AsnCodeCheckFileDoneRoutines': >asncode.c:3391:6: warning: format '%x' expects argument of type 'unsigned int', but argument 3 has type 'AsnCodeSpooledPtr' [-Wformat] >asncode.c: In function 'AsnIterTakeBufReal': >asncode.c:3428:7: warning: format '%x' expects argument of type 'unsigned int', but argument 4 has type 'AsnCodeSpooledPtr' [-Wformat] >cp -p asntool ../bin >make -f makedemo.unx CFLAGS1="-DNDEBUG -O3 -D_LARGE_FILE -c " LDFLAGS1="-O3 -D_LARGE_FILES " SHELL="/bin/sh" OTHERLIBS="-lm" LCL="lnx" RAN="ranlib" AR="ar" CC="gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE" >./ln-if-absent ../demo/*.* . >./ln-if-absent ../regexp/test/*.* . >./ln-if-absent ../regexp/demo/*.* . >./ln-if-absent ../internal/*.* . >set: No match. >make: [copy] Error 1 (ignored) >chmod -R ug+rw,o+r . >echo Waiting...go >Waiting...go >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o testcore -O3 -D_LARGE_FILES -I../include -L../lib testcore.c -lncbi -lm >testcore.c: In function 'BuildBS': >testcore.c:326:13: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o makeset -O3 -D_LARGE_FILES -I../include -L../lib makeset.c -lncbiobj -lncbi -lm >In file included from makeset.c:9:0: >../include/all.h:7078:0: warning: "RNA_QUAL" redefined [enabled by default] >../include/all.h:5651:0: note: this is the location of the previous definition >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o getmesh -O3 -D_LARGE_FILES -I../include -L../lib getmesh.c -lncbiobj -lncbi -lm >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o indexpub -O3 -D_LARGE_FILES -I../include -L../lib indexpub.c -lncbiobj -lncbi -lm >indexpub.c: In function 'Nlm_Main': >indexpub.c:60:4: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] >indexpub.c:60:4: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Nlm_Int4' [-Wformat] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o getpub -O3 -D_LARGE_FILES -I../include -L../lib getpub.c -lncbiobj -lncbi -lm >getpub.c: In function 'Nlm_Main': >getpub.c:64:3: warning: format '%ld' expects argument of type 'long int *', but argument 3 has type 'Nlm_Int4 *' [-Wformat] >getpub.c:64:3: warning: format '%ld' expects argument of type 'long int *', but argument 4 has type 'Nlm_Int4 *' [-Wformat] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o testobj -O3 -D_LARGE_FILES -I../include -L../lib testobj.c -lncbiobj -lncbi -lm >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o seqtest -O3 -D_LARGE_FILES -I../include -L../lib seqtest.c -lncbiobj -lncbi -lm >seqtest.c: In function 'Nlm_Main': >seqtest.c:99:3: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] >seqtest.c:99:3: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Nlm_Int4' [-Wformat] >seqtest.c:99:3: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'Nlm_Int4' [-Wformat] >seqtest.c:103:5: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o dosimple -O3 -D_LARGE_FILES -I../include -L../lib dosimple.c -lncbiobj -lncbi -lm >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o asn2ff -O3 -D_LARGE_FILES -I../include -L../lib asn2ff.c -lncbiobj -lncbi -lm >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o checksub -O3 -D_LARGE_FILES -I../include -L../lib checksub.c -lncbiobj -lncbi -lm >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o asndhuff -O3 -D_LARGE_FILES -I../include -L../lib asndhuff.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o entrcmd -O3 -D_LARGE_FILES -I../include -L../lib entrcmd.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm >entrcmd.c: In function 'ProcessOutput': >entrcmd.c:722:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] >entrcmd.c:730:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] >entrcmd.c:773:17: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat] >entrcmd.c:887:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] >entrcmd.c:895:21: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] >entrcmd.c:915:17: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o errhdr -O3 -D_LARGE_FILES -I../include -L../lib errhdr.c -lncbiobj -lncbi -lm >In file included from /usr/include/string.h:642:0, > from ../include/ncbilcl.h:156, > from ../include/ncbi.h:57, > from errhdr.c:1: >In function 'strncat', > inlined from 'main' at errhdr.c:44:11: >/usr/include/bits/string3.h:152:3: warning: call to __builtin___strncat_chk might overflow destination buffer [enabled by default] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o cdscan -O3 -D_LARGE_FILES -I../include -L../lib cdscan.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o findspl -O3 -D_LARGE_FILES -I../include -L../lib findspl.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o ncbisort -O3 -D_LARGE_FILES -I../include -L../lib sortcmd.c -lncbitool -lblastcompadj \ > -lncbi -lm >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o fa2htgs -O3 -D_LARGE_FILES -I../include -L../lib fa2htgs.c -lncbiobj -lncbi -lm >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o fastacmd -O3 -D_LARGE_FILES -I../include -L../lib fastacmd.c -lncbitool -lblastcompadj \ > -lncbiobj -lncbi -lm >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o formatdb -O3 -D_LARGE_FILES -I../include -L../lib formatdb.c -lncbitool -lblastcompadj \ > -lncbiobj -lncbi -lm >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o formatrpsdb -O3 -D_LARGE_FILES -I../include -L../lib formatrpsdb.c -lblastapi -lncbitool \ > -lblastcompadj -lblast -lncbiobj -lncbi -lm >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o blastall -O3 -D_LARGE_FILES -I../include -L../lib blastall.c -lblastapi \ > -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi \ > -lm >blastall.c: In function 'Main_new': >blastall.c:1484:9: warning: format '%ld' expects argument of type 'long int *', but argument 3 has type 'Nlm_Int4 *' [-Wformat] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o blastpgp -O3 -D_LARGE_FILES -I../include -L../lib blastpgp.c -lncbitool \ > -lblastcompadj -lncbiobj -lncbi -lm >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o testval -O3 -D_LARGE_FILES -I../include -L../lib testval.c -lncbiobj -lncbi -lm >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o seedtop -O3 -D_LARGE_FILES -I../include -L../lib seedtop.c -lncbitool \ > -lblastcompadj -lncbiobj -lncbi -lm >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o makemat -O3 -D_LARGE_FILES -I../include -L../lib makemat.c -lncbitool \ > -lblastcompadj -lncbiobj -lncbi -lm >makemat.c: In function 'convertToMatrices': >makemat.c:277:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >makemat.c:279:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >makemat.c:290:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >makemat.c:292:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o copymat -O3 -D_LARGE_FILES -I../include -L../lib copymat.c -lblast -lncbitool \ > -lblastcompadj -lncbiobj -lncbi -lm >copymat.c: In function 'findTotalLength': >copymat.c:429:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >copymat.c:430:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >copymat.c:431:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >copymat.c:432:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >copymat.c:433:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >copymat.c:434:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >copymat.c:435:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >copymat.c:436:11: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >copymat.c:439:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >copymat.c:440:15: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >copymat.c: In function 'readAllMatrices': >copymat.c:383:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >copymat.c:385:19: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >copymat.c: In function 'readNextMatrix': >copymat.c:299:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >copymat.c:301:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >copymat.c:304:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >copymat.c:305:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >copymat.c:306:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >copymat.c:307:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >copymat.c:309:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >copymat.c:310:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >copymat.c:311:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >copymat.c:312:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >copymat.c:314:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >copymat.c:315:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >copymat.c:316:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >copymat.c:317:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >copymat.c:319:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o impala -O3 -D_LARGE_FILES -I../include -L../lib profiles.c -lncbitool \ > -lblastcompadj -lncbiobj -lncbi -lm >profiles.c: In function 'findProfileParams': >profiles.c:461:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:462:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:463:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:464:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:465:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:466:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:467:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:468:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:471:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:472:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c: In function 'findMatchingProfiles': >profiles.c:1104:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:1106:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:1117:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:1119:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c: In function 'computeL': >profiles.c:379:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:380:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:381:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:382:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:383:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:397:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:398:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:399:10: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:412:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:414:12: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c: In function 'readkbp': >profiles.c:267:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:273:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:276:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:277:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:278:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:279:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:281:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:282:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:283:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:284:9: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c: In function 'readSequence': >profiles.c:204:11: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:206:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:235:11: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] >profiles.c:237:14: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result [-Wunused-result] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o megablast -O3 -D_LARGE_FILES -I../include -L../lib megablast.c -lblastapi \ > -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lm \ > >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o vecscreen -O3 -D_LARGE_FILES -I../include -L../lib vecscreen.c -lncbitool \ > -lblastcompadj -lncbiobj -lncbi -lm >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o gil2bin -O3 -D_LARGE_FILES -I../include -L../lib gil2bin.c -lncbitool -lblastcompadj \ > -lncbiobj -lncbi -lm >gil2bin.c: In function 'MakeGiFileText': >gil2bin.c:73:9: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o blastclust -O3 -D_LARGE_FILES -I../include -L../lib blastclust.c -lncbitool \ > -lblastcompadj -lncbiobj -lncbi -lm >blastclust.c: In function 'BlastClusterNeighbours': >blastclust.c:430:17: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] >blastclust.c: In function 'Nlm_Main': >blastclust.c:1230:20: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat] >blastclust.c:1268:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Nlm_Int4' [-Wformat] >blastclust.c:1268:21: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'Nlm_Int4' [-Wformat] >blastclust.c:1271:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Nlm_Int4' [-Wformat] >blastclust.c:1331:22: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o rpsblast -O3 -D_LARGE_FILES -I../include -L../lib rpsblast.c -lblastapi \ > -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lm \ > >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o asn2xml -O3 -D_LARGE_FILES -I../include -L../lib asn2xml.c -lncbiobj -lncbi -lm >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o debruijn -O3 -D_LARGE_FILES -I../include -L../lib debruijn.c -lblast -lblastcompadj -lncbi -lm >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o asn2idx -O3 -D_LARGE_FILES -I../include -L../lib asn2idx.c -lncbitool -lblastcompadj -lncbiobj \ > -lncbi -lm >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o sortbyquote -O3 -D_LARGE_FILES -I../include -L../lib sortbyquote.c -lncbiobj -lncbi -lm >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o subfuse -O3 -D_LARGE_FILES -I../include -L../lib subfuse.c -lncbiobj -lncbi -lm >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o test_regexp -O3 -D_LARGE_FILES -I../include -L../lib pcretest.c -lregexp >pcretest.c: In function 'main': >pcretest.c:497:5: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long unsigned int' [-Wformat] >pcretest.c:779:9: warning: format '%d' expects argument of type 'int', but argument 3 has type 'size_t' [-Wformat] >pcretest.c:779:9: warning: format '%d' expects argument of type 'int', but argument 4 has type 'size_t' [-Wformat] >pcretest.c:1021:15: warning: format '%d' expects argument of type 'int', but argument 2 has type 'long unsigned int' [-Wformat] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o demo_regexp -O3 -D_LARGE_FILES -I../include -L../lib pcredemo.c -lregexp >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o demo_regexp_grep -O3 -D_LARGE_FILES -I../include -L../lib pcregrep.c -lregexp >make -f makedemo.unx CFLAGS1="-DNDEBUG -O3 -D_LARGE_FILE -c " LDFLAGS1="-O3 -D_LARGE_FILES " SHELL="/bin/sh" OTHERLIBS="-lm" LCL="lnx" RAN="ranlib" AR="ar" CC="gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE" THREAD_OBJ=ncbithr.o THREAD_OTHERLIBS="-lpthread" blastall blastpgp seedtop megablast rpsblast blastclust >./ln-if-absent ../demo/*.* . >./ln-if-absent ../regexp/test/*.* . >./ln-if-absent ../regexp/demo/*.* . >./ln-if-absent ../internal/*.* . >set: No match. >make: [copy] Error 1 (ignored) >chmod -R ug+rw,o+r . >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o blastall -O3 -D_LARGE_FILES -I../include -L../lib blastall.c ncbithr.o -lblastapi \ > -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi \ > -lm -lpthread >blastall.c: In function 'Main_new': >blastall.c:1484:9: warning: format '%ld' expects argument of type 'long int *', but argument 3 has type 'Nlm_Int4 *' [-Wformat] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o blastpgp -O3 -D_LARGE_FILES -I../include -L../lib blastpgp.c ncbithr.o -lncbitool \ > -lblastcompadj -lncbiobj -lncbi -lm -lpthread >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o seedtop -O3 -D_LARGE_FILES -I../include -L../lib seedtop.c ncbithr.o -lncbitool \ > -lblastcompadj -lncbiobj -lncbi -lm -lpthread >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o megablast -O3 -D_LARGE_FILES -I../include -L../lib megablast.c ncbithr.o -lblastapi \ > -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lm \ > -lpthread >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o rpsblast -O3 -D_LARGE_FILES -I../include -L../lib rpsblast.c ncbithr.o -lblastapi \ > -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lm \ > -lpthread >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o blastclust -O3 -D_LARGE_FILES -I../include -L../lib blastclust.c ncbithr.o -lncbitool \ > -lblastcompadj -lncbiobj -lncbi -lm -lpthread >blastclust.c: In function 'BlastClusterNeighbours': >blastclust.c:430:17: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] >blastclust.c: In function 'Nlm_Main': >blastclust.c:1230:20: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'int' [-Wformat] >blastclust.c:1268:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Nlm_Int4' [-Wformat] >blastclust.c:1268:21: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'Nlm_Int4' [-Wformat] >blastclust.c:1271:21: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'Nlm_Int4' [-Wformat] >blastclust.c:1331:22: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat] >make -f makenet.unx CFLAGS1="-DNDEBUG -O3 -D_LARGE_FILE -c " LDFLAGS1="-O3 -D_LARGE_FILES " SHELL="/bin/sh" AR="ar" CC="gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE" RAN="ranlib" OTHERLIBS="-lm" THREAD_OBJ=ncbithr.o THREAD_OTHERLIBS="-lpthread" NETENTREZVERSION="2.02c2ASN1SPEC6 " BLIB31=libvibnet.a VIBLIBS="-L/usr/X11R6/lib -lXmu -lXm -Wl,-Bdynamic -lXt -lSM -lICE -lXext -lXp -lX11 -ldl" OGLLIBS=" " VIBFLAG="-I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF" VIB="Psequin sbtedit Nentrez udv ddv blastcl3 taxblast idfetch bl2seq asn2gb tbl2asn gene2xml entrez2 gbseqget psiblast.REAL psiblast_cs.REAL blast.REAL blast_cs.REAL nph-viewgif.cgi wblast2.REAL wblast2_cs.REAL bl2bag.cgi " >./ln-if-absent ../connect/test/*.c . >./ln-if-absent ../network/entrez/client/*.h ../include >./ln-if-absent ../network/entrez/client/*.c . >./ln-if-absent ../network/medarch/client/*.h ../include >./ln-if-absent ../network/medarch/client/*.c . >./ln-if-absent ../network/taxonomy/client/*.h ../include >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../network/taxonomy/client/*.c . >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../network/taxon1/common/*.h ../include >./ln-if-absent ../network/taxon1/common/*.c . >./ln-if-absent ../network/taxon1/taxon2/*.h ../include >./ln-if-absent ../network/taxon1/taxon2/*.c . >./ln-if-absent ../network/id0arch/client/*.h ../include >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../network/id0arch/client/*.c . >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../network/id1arch/*.h ../include >./ln-if-absent ../network/id1arch/*.c . >./ln-if-absent ../network/id2arch/*.h ../include >./ln-if-absent ../network/id2arch/*.c . >./ln-if-absent ../network/spell/client/*.h ../include >./ln-if-absent ../network/spell/client/*.c . >./ln-if-absent ../network/suggest/client/*.h ../include >./ln-if-absent ../network/suggest/client/*.c . >./ln-if-absent ../network/blast3/client/*.h ../include >./ln-if-absent ../network/blast3/client/*.c . >./ln-if-absent ../tools/taxblast.h ../include >./ln-if-absent ../tools/taxblast.c . >./ln-if-absent /*.c . >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../internal/misc/*.c . >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../internal/misc/*.h ../include >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../internal/ssparse/*.c . >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../internal/ssparse/*.h ../include >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../internal/libparsn/*.c . >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../internal/libparsn/*.h ../include >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../internal/smart/smartnet/*.c . >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../internal/smart/smartnet/*.h ../include >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../internal/www/*.c . >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../internal/www/*.h ../include >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../internal/query/*.c . >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../internal/query/*.h ../include >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../network/sybutils/ctlib/*.c . >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../network/sybutils/ctlib/*.h ../include >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../network/sybutils/oslib/*.c . >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../network/sybutils/oslib/*.h ../include >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../network/sybutils/idloadlib/*.c . >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../network/sybutils/idloadlib/*.h ../include >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../network/nsclilib/*.h ../include >./ln-if-absent ../network/nsclilib/*.c . >./ln-if-absent ../network/vibnet/*.c . >./ln-if-absent ../network/vibnet/*.h ../include >./ln-if-absent ../cdromlib/*.h ../include >./ln-if-absent ../network/wwwblast/Src/*.c . >./ln-if-absent ../network/wwwblast/Src/*.h ../include >./ln-if-absent ../cdromlib/accentr.c . >./ln-if-absent ../cdromlib/accutils.c . >./ln-if-absent ../sequin/*.* . >./ln-if-absent ../demo/entrez.c . >./ln-if-absent ../demo/seqget.c . >./ln-if-absent ../demo/entrcmd.c . >./ln-if-absent ../demo/batch.c . >./ln-if-absent ../demo/qbatch.c . >./ln-if-absent ../demo/elecpcr.c . >./ln-if-absent ../demo/asn2fast.c . >./ln-if-absent ../demo/asn2asn.c . >./ln-if-absent ../demo/cleanasn.c . >./ln-if-absent ../demo/cspeedtest.c . >./ln-if-absent ../demo/sqn2agp.c . >./ln-if-absent ../demo/sugint.c . >./ln-if-absent ../demo/fetchent.c . >./ln-if-absent ../demo/udvmain.c . >./ln-if-absent ../demo/rtestval.c . >./ln-if-absent ../demo/aceread_tst.c . >./ln-if-absent ../demo/asn2ff.c . >./ln-if-absent ../demo/asn2gb.c . >./ln-if-absent ../demo/asn2fsa.c . >./ln-if-absent ../demo/asn2all.c . >./ln-if-absent ../demo/gene2xml.c . >./ln-if-absent ../demo/asnval.c . >./ln-if-absent ../demo/asndisc.c . >./ln-if-absent ../demo/asnbarval.c . >./ln-if-absent ../demo/aceread_tst.c . >./ln-if-absent ../demo/asnmacro.c . >./ln-if-absent ../demo/asnstrip.c . >./ln-if-absent ../demo/tbl2asn.c . >./ln-if-absent ../demo/raw2delt.c . >./ln-if-absent ../demo/flint.c . >./ln-if-absent ../demo/xlint.c . >./ln-if-absent ../demo/diffshift.c . >./ln-if-absent ../demo/gbseqget.c . >./ln-if-absent ../demo/insdseqget.c . >./ln-if-absent ../demo/nps2gps.c . >./ln-if-absent ../demo/testent2.c . >./ln-if-absent ../demo/trna2sap.c . >./ln-if-absent ../demo/trna2tbl.c . >./ln-if-absent ../demo/entrez2.c . >./ln-if-absent ../demo/condense.c . >./ln-if-absent ../demo/spideymain.c . >./ln-if-absent ../demo/dotmain.c . >./ln-if-absent ../demo/ingenmain.c . >./ln-if-absent ../demo/bl2seq.c . >./ln-if-absent ../demo/blastall.c . >./ln-if-absent ../demo/blast_driver.c . >./ln-if-absent ../demo/src_chk.c . >./ln-if-absent ../demo/tbl_chk.c . >./ln-if-absent ../demo/srchnt.c ../demo/srchaa.c ../demo/mts.c ../demo/sigme.c ../demo/dst.c ../demo/ccp.c ../demo/epi.c ../demo/twop.c ../demo/cnsrt.c ../demo/cnsgn.c ../demo/ccpv.c ../demo/dustv.c ../demo/epiv.c ../demo/sigmev.c ../demo/twopv.c ../demo/cnsrtv.c ../demo/cnsgnv.c ../demo/searchv.c . >./ln-if-absent ../network/entrez/server/*.* . >set: No match. >make: [copy] Error 1 (ignored) >./ln-if-absent ../network/suggest/server/*.* . >chmod -R ug+rw,o+r . >echo Waiting...go >Waiting...go >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_lib_.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_debug.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_service.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_error.c >rm -f libnetcli.a >ar cru libnetcli.a ni_lib_.o ni_debug.o ni_service.o ni_error.o >cp -p libnetcli.a ../lib >ranlib ../lib/libnetcli.a >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netentr.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netlib.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objneten.c >rm -f libnetentr.a >ar cru libnetentr.a netentr.o netlib.o objneten.o >cp -p libnetentr.a ../lib >ranlib ../lib/libnetentr.a >./ln-if-absent accentr.c Naccentr.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NETENT_ Naccentr.c >rm -f libncbiNacc.a >ar cru libncbiNacc.a Naccentr.o accutils.o >cp -p libncbiNacc.a ../lib >ranlib ../lib/libncbiNacc.a >./ln-if-absent accentr.c Caccentr.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NET_AND_CD_ Caccentr.c >rm -f libncbiCacc.a >ar cru libncbiCacc.a Caccentr.o accutils.o >cp -p libncbiCacc.a ../lib >ranlib ../lib/libncbiCacc.a >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netcnfg.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" trmlst.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" docsum.c >docsum.c: In function 'LaunchStructureViewer': >docsum.c:4192:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] >rm -f libvibnet.a >ar cru libvibnet.a netcnfg.o trmlst.o docsum.o >cp -p libvibnet.a ../lib >ranlib ../lib/libvibnet.a >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objtax1.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxutil.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o tc2dproc.o -DTAXSERVICE tc2proc.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o txcdproc.o -DTAXSERVICE txcdproc.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" parttree.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxcs.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxblast.c >rm -f libncbitxc2.a >ar cru libncbitxc2.a objtax1.o taxutil.o tc2dproc.o txcdproc.o parttree.o taxcs.o taxblast.o >cp -p libncbitxc2.a ../lib >ranlib ../lib/libncbitxc2.a >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1gen.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1arch.c >id1arch.c: In function 'SeqHistPrintTable': >id1arch.c:556:57: warning: '0' flag ignored with precision and '%d' gnu_printf format [-Wformat] >id1arch.c:556:57: warning: '0' flag ignored with precision and '%d' gnu_printf format [-Wformat] >id1arch.c:556:57: warning: '0' flag ignored with precision and '%d' gnu_printf format [-Wformat] >id1arch.c:563:25: warning: spurious trailing '%' in format [-Wformat] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" accid1.c >rm -f libncbiid1.a >ar cru libncbiid1.a id1gen.o id1arch.o accid1.o >cp -p libncbiid1.a ../lib >ranlib ../lib/libncbiid1.a >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objblst3.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netblap3.c >rm -f libnetblast.a >ar cru libnetblast.a objblst3.o netblap3.o >cp -p libnetblast.a ../lib >ranlib ../lib/libnetblast.a >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -DNLM_OBJ_INCL=\"mapmla.h\" objmla.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medarch.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medutil.c >rm -f libncbimla.a >ar cru libncbimla.a objmla.o medarch.o medutil.o >cp -p libncbimla.a ../lib >ranlib ../lib/libncbimla.a >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o Psequin -I. -O3 -D_LARGE_FILES -I../include -L../lib -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -UINTERNAL_NCBI_SEQUIN sequin1.c sequin2.c sequin3.c sequin4.c sequin5.c sequin6.c sequin7.c sequin8.c sequin9.c sequin10.c sequinx.c \ >-lncbicn3d -lddvlib -lvibnet -lncbidesk -lblastapi -lblast -lncbimmdb \ >-lncbitxc2 -lncbiid1 -lnetblast -lncbitool -lblastcompadj -lncbimla \ >-lncbiNacc -lnetentr -lnetcli -lncbicdr -lvibrant -lncbiobj -lncbi -L/usr/X11R6/lib -lXmu -lXm -Wl,-Bdynamic -lXt -lSM -lICE -lXext -lXp -lX11 -ldl -lm >sequin1.c: In function 'LaunchedGoogleEarth': >sequin1.c:1492:18: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] >sequin1.c: In function 'Entrez2QueryProc': >sequin1.c:10098:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] >sequin3.c: In function 'AddBlastTag': >sequin3.c:18668:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast] >sequin3.c: In function 'CommonAddBlastToSeqAnnot': >sequin3.c:18693:60: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] >sequin7.c: In function 'GetSubListForRNAStrandCorrection': >sequin7.c:7934:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] >sequin9.c: In function 'UpdatePairToUpdateTitlesDialog': >sequin9.c:13978:17: warning: large integer implicitly truncated to unsigned type [-Woverflow] >../lib/libncbitool.a(pobutil.o):(.text+0x4d40): warning: memset used with constant zero length parameter; this could be due to transposed parameters >: Psequin >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o sbtedit -I. -O3 -D_LARGE_FILES -I../include -L../lib -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -UINTERNAL_NCBI_SEQUIN sbtedit.c \ >-lncbicn3d -lddvlib -lvibnet -lncbidesk -lblastapi -lblast -lncbimmdb \ >-lncbitxc2 -lncbiid1 -lnetblast -lncbitool -lblastcompadj -lncbimla \ >-lncbiNacc -lnetentr -lnetcli -lncbicdr -lvibrant -lncbiobj -lncbi -L/usr/X11R6/lib -lXmu -lXm -Wl,-Bdynamic -lXt -lSM -lICE -lXext -lXp -lX11 -ldl -lm >: sbtedit >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o Nentrez -O3 -D_LARGE_FILES -I../include -L../lib -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF entrez.c -lncbiid1 -lvibnet -lncbicn3d -lncbidesk -lblastapi -lblast -lncbimmdb -lddvlib \ >-lnetblast -lncbitool -lblastcompadj -lncbiNacc -lnetentr -lnetcli -lncbiacc -lvibrant -lncbicdr -lncbiobj -lncbi -L/usr/X11R6/lib -lXmu -lXm -Wl,-Bdynamic -lXt -lSM -lICE -lXext -lXp -lX11 -ldl -lm >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" udvmain.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o udv -O3 -D_LARGE_FILES -I../include -L../lib -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF udvmain.o -lncbiid1 -lvibnet -lncbidesk -lblastapi -lblast -lncbimmdb -lddvlib \ >-lncbiNacc -lnetentr -lnetcli -lncbicdr -lvibrant \ >-lncbitool -lblastcompadj -lncbiobj \ >-lncbi -L/usr/X11R6/lib -lXmu -lXm -Wl,-Bdynamic -lXt -lSM -lICE -lXext -lXp -lX11 -ldl -lm >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -DNDEBUG -O3 -D_LARGE_FILE -c -I../include -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ddvmain.c >ddvmain.c:147:13: warning: 'DDV_myargs' initialized and declared 'extern' [enabled by default] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o ddv -O3 -D_LARGE_FILES -I../include -L../lib -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF ddvmain.o -lncbiid1 -lvibnet -lncbidesk -lblastapi -lblast -lncbimmdb -lddvlib \ >-lncbiNacc -lnetentr -lnetcli -lncbicdr -lvibrant -lncbitool \ >-lblastcompadj -lncbiobj -lncbi \ >-L/usr/X11R6/lib -lXmu -lXm -Wl,-Bdynamic -lXt -lSM -lICE -lXext -lXp -lX11 -ldl -lm >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -g -o blastcl3 -O3 -D_LARGE_FILES -I../include -L../lib -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DBLAST_CS_API blastall.c \ > -lblastapi -lblast -lnetblast -lncbitool -lblastcompadj \ > -lnetcli -lncbiobj -lncbi -lm >blastall.c: In function 'Main_new': >blastall.c:1484:9: warning: format '%ld' expects argument of type 'long int *', but argument 3 has type 'Nlm_Int4 *' [-Wformat] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -g -o taxblast -O3 -D_LARGE_FILES -I../include -L../lib -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF taxblast_main.c \ > -lblastapi -lblast -lnetblast -lncbiid1 -lncbitxc2 -lncbitool -lblastcompadj \ > -lnetcli -lncbiobj -lncbi -lm >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -g -o idfetch -O3 -D_LARGE_FILES -I../include -L../lib -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF idfetch.c -lncbiid1 -lnetcli -lncbiobj -lncbi -lm >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o bl2seq -O3 -D_LARGE_FILES -I../include -L../lib -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF bl2seq.c -lblastapi -lblast -lncbitool \ > -lblastcompadj -lncbiid1 -lnetcli -lncbiobj -lncbi \ > -lm >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -g -o asn2gb -O3 -D_LARGE_FILES -I../include -L../lib -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF asn2gb.c -lncbiid1 -lnetcli \ > -lncbitool -lblastcompadj -lncbiobj -lncbi -lm >asn2gb.c: In function 'HandleMultipleRecords': >asn2gb.c:1739:10: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] >asn2gb.c: In function 'CompareFlatFiles': >asn2gb.c:1184:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] >asn2gb.c:1191:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] >asn2gb.c:1216:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] >asn2gb.c:1242:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] >asn2gb.c:1245:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] >asn2gb.c:1250:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] >asn2gb.c:1253:14: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] >asn2gb.c:1273:18: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result [-Wunused-result] >asn2gb.c: In function 'ReportDiffs': >asn2gb.c:1071:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] >asn2gb.c:1074:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] >asn2gb.c:1077:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] >asn2gb.c:1080:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] >asn2gb.c:1083:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] >asn2gb.c:1089:16: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result [-Wunused-result] >asn2gb.c:1096:12: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o tbl2asn -O3 -D_LARGE_FILES -I../include -L../lib -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF tbl2asn.c -lncbitool -lblastcompadj \ > -lncbiobj -lnetcli -lncbi -lm >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -g -o gene2xml -O3 -D_LARGE_FILES -I../include -L../lib -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF gene2xml.c -lnetcli -lncbiobj -lncbi -lm >gene2xml.c: In function 'ProcessOneRecord': >gene2xml.c:364:16: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -g -o entrez2 -O3 -D_LARGE_FILES -I../include -L../lib -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF entrez2.c -lncbiid1 -lnetcli -lncbidesk \ > -lblastapi -lblast -lncbimmdb -lncbitool -lblastcompadj \ > -lncbiobj -lvibrant -lncbi -L/usr/X11R6/lib -lXmu -lXm -Wl,-Bdynamic -lXt -lSM -lICE -lXext -lXp -lX11 -ldl -lm >: entrez2 >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -g -o gbseqget -O3 -D_LARGE_FILES -I../include -L../lib -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF gbseqget.c -lncbiid1 -lnetcli \ > -lncbitool -lblastcompadj -lncbiobj -lncbi -lm >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o psiblast.REAL -O3 -D_LARGE_FILES -I../include -L../lib -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF psiblast.c wwwbutl.c ncbithr.o \ >-lncbidesk -lblastapi -lblast -lncbitool -lblastcompadj \ >-lvibgif -lncbiobj -lncbi -lm -lpthread >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o psiblast_cs.REAL -O3 -D_LARGE_FILES -I../include -L../lib -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DNCBI_ENTREZ_CLIENT psiblast.c wwwbutl.c \ >ncbithr.o -lncbitxc2 -lncbiid1 -lnetblast -lnetcli -lncbidesk -lblastapi \ >-lblast -lncbitool -lblastcompadj -lvibgif \ >-lncbiobj -lncbi -lm -lpthread >wwwbutl.c: In function 'WWWCreateSearchOptions': >wwwbutl.c:948:32: warning: assignment from incompatible pointer type [enabled by default] >wwwbutl.c:968:15: warning: passing argument 1 of 'Nlm_BSWrite' from incompatible pointer type [enabled by default] >../include/ncbibs.h:80:29: note: expected 'Nlm_ByteStorePtr' but argument is of type 'SeqDataPtr' >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o blast.REAL -O3 -D_LARGE_FILES -I../include -L../lib -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF wwwblast.c wwwbutl.c ncbithr.o \ >-lncbidesk -lblastapi -lblast -lncbitool -lblastcompadj -lvibgif -lncbiobj \ >-lncbi -lm -lpthread >wwwblast.c: In function 'WWWBlastDoSearch': >wwwblast.c:1076:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o blast_cs.REAL -O3 -D_LARGE_FILES -I../include -L../lib -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DNCBI_ENTREZ_CLIENT wwwblast.c wwwbutl.c \ >ncbithr.o -lncbitxc2 -lncbiid1 -lnetblast -lnetcli -lncbidesk -lblastapi \ >-lblast -lncbitool -lblastcompadj -lvibgif \ >-lncbiobj -lncbi -lm -lpthread >wwwblast.c: In function 'WWWBlastDoSearch': >wwwblast.c:1076:25: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] >wwwbutl.c: In function 'WWWCreateSearchOptions': >wwwbutl.c:948:32: warning: assignment from incompatible pointer type [enabled by default] >wwwbutl.c:968:15: warning: passing argument 1 of 'Nlm_BSWrite' from incompatible pointer type [enabled by default] >../include/ncbibs.h:80:29: note: expected 'Nlm_ByteStorePtr' but argument is of type 'SeqDataPtr' >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o nph-viewgif.cgi -O3 -D_LARGE_FILES -I../include -L../lib -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF viewgif.c >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o wblast2.REAL -O3 -D_LARGE_FILES -I../include -L../lib -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DBL2SEQ_STANDALONE wblast2.c \ >-lblastapi -lncbitool -lblastcompadj -lncbiobj -lblast -lncbi -lm >wblast2.c: In function 'Blast2SeqMainPage': >wblast2.c:759:13: warning: format '%d' expects argument of type 'int', but argument 2 has type 'Nlm_FloatHi' [-Wformat] >wblast2.c: In function 'PrintOutScore': >wblast2.c:1052:16: warning: assignment from incompatible pointer type [enabled by default] >wblast2.c:1057:26: warning: assignment from incompatible pointer type [enabled by default] >wblast2.c:1070:23: warning: assignment from incompatible pointer type [enabled by default] >wblast2.c:1082:22: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat] >wblast2.c:1082:22: warning: format '%ld' expects argument of type 'long int', but argument 7 has type 'int' [-Wformat] >wblast2.c:1084:15: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat] >wblast2.c: In function 'PrintParam': >wblast2.c:1647:5: warning: format '%d' expects argument of type 'int', but argument 2 has type 'Nlm_FloatHi' [-Wformat] >wblast2.c:1724:9: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'Nlm_Int4' [-Wformat] >wblast2.c:1724:9: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] >wblast2.c:1741:5: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'Nlm_Int4' [-Wformat] >wblast2.c:1743:9: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'Nlm_Int4' [-Wformat] >wblast2.c:1743:9: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] >wblast2.c:1749:9: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'Nlm_Int4' [-Wformat] >wblast2.c:1749:9: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] >wblast2.c:1765:5: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'Nlm_Int4' [-Wformat] >wblast2.c:1767:9: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'Nlm_Int4' [-Wformat] >wblast2.c:1767:9: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o wblast2_cs.REAL -O3 -D_LARGE_FILES -I../include -L../lib -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF -DNCBI_ENTREZ_CLIENT -DBL2SEQ_STANDALONE \ >wblast2.c -lncbiid1 -lnetcli -lblastapi -lncbitool -lblastcompadj \ >-lncbiobj -lblast -lncbi \ >-lm >wblast2.c: In function 'Blast2SeqMainPage': >wblast2.c:759:13: warning: format '%d' expects argument of type 'int', but argument 2 has type 'Nlm_FloatHi' [-Wformat] >wblast2.c: In function 'PrintOutScore': >wblast2.c:1052:16: warning: assignment from incompatible pointer type [enabled by default] >wblast2.c:1057:26: warning: assignment from incompatible pointer type [enabled by default] >wblast2.c:1070:23: warning: assignment from incompatible pointer type [enabled by default] >wblast2.c:1082:22: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat] >wblast2.c:1082:22: warning: format '%ld' expects argument of type 'long int', but argument 7 has type 'int' [-Wformat] >wblast2.c:1084:15: warning: format '%ld' expects argument of type 'long int', but argument 4 has type 'int' [-Wformat] >wblast2.c: In function 'FindSeqByAccession': >wblast2.c:1573:17: warning: assignment from incompatible pointer type [enabled by default] >wblast2.c:1574:18: warning: assignment from incompatible pointer type [enabled by default] >wblast2.c:1582:7: warning: passing argument 1 of 'Nlm_BSWrite' from incompatible pointer type [enabled by default] >../include/ncbibs.h:80:29: note: expected 'Nlm_ByteStorePtr' but argument is of type 'SeqDataPtr' >wblast2.c: In function 'PrintParam': >wblast2.c:1647:5: warning: format '%d' expects argument of type 'int', but argument 2 has type 'Nlm_FloatHi' [-Wformat] >wblast2.c:1724:9: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'Nlm_Int4' [-Wformat] >wblast2.c:1724:9: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] >wblast2.c:1741:5: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'Nlm_Int4' [-Wformat] >wblast2.c:1743:9: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'Nlm_Int4' [-Wformat] >wblast2.c:1743:9: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] >wblast2.c:1749:9: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'Nlm_Int4' [-Wformat] >wblast2.c:1749:9: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] >wblast2.c:1765:5: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'Nlm_Int4' [-Wformat] >wblast2.c:1767:9: warning: format '%ld' expects argument of type 'long int', but argument 2 has type 'Nlm_Int4' [-Wformat] >wblast2.c:1767:9: warning: format '%ld' expects argument of type 'long int', but argument 3 has type 'Nlm_Int4' [-Wformat] >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o bl2bag.cgi -O3 -D_LARGE_FILES -I../include -L../lib -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF bl2bag.c -lncbi -lm >make -f makenet.unx CFLAGS1="-DNDEBUG -O3 -D_LARGE_FILE -c " LDFLAGS1="-O3 -D_LARGE_FILES " SHELL="/bin/sh" AR="ar" CC="gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE" RAN="ranlib" OTHERLIBS="-lm" THREAD_OBJ=ncbithr.o THREAD_OTHERLIBS="-lpthread" NETENTREZVERSION="2.02c2ASN1SPEC6 " BLIB31=libvibnet.a VIBLIBS="-L/usr/X11R6/lib -lXmu -lXm -Wl,-Bdynamic -lXt -lSM -lICE -lXext -lXp -lX11 -ldl" OGLLIBS=" " VIBFLAG="-I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF" VIB="Psequin sbtedit Nentrez udv ddv blastcl3 taxblast idfetch bl2seq asn2gb tbl2asn gene2xml entrez2 gbseqget psiblast.REAL psiblast_cs.REAL blast.REAL blast_cs.REAL nph-viewgif.cgi wblast2.REAL wblast2_cs.REAL bl2bag.cgi " asn2all asn2asn >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -g -o asn2all -O3 -D_LARGE_FILES -I../include -L../lib -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF asn2all.c ncbithr.o -lncbiid1 \ > -lnetcli -lncbitool -lblastcompadj -lncbiobj -lncbi \ > -lm -lpthread >gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -o asn2asn -O3 -D_LARGE_FILES -I../include -L../lib -I/usr/X11R6/include -L/usr/X11R6/lib -DWIN_MOTIF asn2asn.c -lncbiid1 -lnetcli -lncbiobj -lncbi -lm >Put the date stamp to the file ../VERSION >********************************************************* >*The new binaries are located in ./ncbi/build/ directory* >********************************************************* >make -j30 -f ../make/makenet.unx 'CC=powerpc64-unknown-linux-gnu-gcc -O2 -pipe -I../include -L../lib' 'LDFLAGS=-Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu' spidey >powerpc64-unknown-linux-gnu-gcc -O2 -pipe -I../include -L../lib -o spidey -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu spideymain.c -lncbiid1 -lncbitool \ > -lblastcompadj -lnetcli -lncbiobj -lncbi -lm >>>> Source compiled. >>>> Test phase [not enabled]: sci-biology/ncbi-tools-2.2.26 > >>>> Install ncbi-tools-2.2.26 into /var/tmp/portage/sci-biology/ncbi-tools-2.2.26/image/ category sci-biology >>>> Completed installing ncbi-tools-2.2.26 into /var/tmp/portage/sci-biology/ncbi-tools-2.2.26/image/ > >strip: powerpc64-unknown-linux-gnu-strip --strip-unneeded -R .comment -R .GCC.command.line > usr/bin/Nentrez > usr/bin/Psequin > usr/bin/asn2ff > usr/bin/asn2gb > usr/bin/asn2idx > usr/bin/asn2xml > usr/bin/asndhuff > usr/bin/asntool > usr/bin/bl2seq > usr/bin/blastall > usr/bin/blastclust > usr/bin/blastcl3 > usr/bin/cdscan-ncbi > usr/bin/blastpgp > usr/bin/copymat > usr/bin/checksub > usr/bin/demo_regexp > usr/bin/debruijn > usr/bin/demo_regexp_grep > usr/bin/ddv > usr/bin/dosimple > usr/bin/entrcmd > usr/bin/entrez2 > usr/bin/fa2htgs > usr/bin/errhdr > usr/bin/formatrpsdb > usr/bin/formatdb > usr/bin/fastacmd > usr/bin/findspl > usr/bin/gene2xml > usr/bin/gil2bin > usr/bin/getmesh > usr/bin/idfetch > usr/bin/getpub > usr/bin/impala > usr/bin/indexpub > usr/bin/makemat > usr/bin/makeset > usr/bin/megablast > usr/bin/ncbisort > usr/bin/rpsblast > usr/bin/sbtedit > usr/bin/seedtop > usr/bin/seqtest > usr/bin/spidey > usr/bin/taxblast > usr/bin/tbl2asn > usr/bin/test_regexp > usr/bin/testcore > usr/bin/testobj > usr/bin/testval > usr/bin/udv > usr/bin/vecscreen > usr/bin/asn2all > usr/bin/asn2asn >ecompressdir: bzip2 -9 /usr/share/man >ecompressdir: bzip2 -9 /usr/share/doc > > * QA Notice: Files built without respecting LDFLAGS have been detected > * Please include the following list of files in your report: > * /usr/bin/entrcmd > * /usr/bin/sbtedit > * /usr/bin/asn2gb > * /usr/bin/fa2htgs > * /usr/bin/seqtest > * /usr/bin/gene2xml > * /usr/bin/formatdb > * /usr/bin/checksub > * /usr/bin/asntool > * /usr/bin/demo_regexp > * /usr/bin/asn2xml > * /usr/bin/demo_regexp_grep > * /usr/bin/testcore > * /usr/bin/cdscan-ncbi > * /usr/bin/impala > * /usr/bin/testval > * /usr/bin/asn2ff > * /usr/bin/megablast > * /usr/bin/Nentrez > * /usr/bin/blastpgp > * /usr/bin/blastall > * /usr/bin/asn2idx > * /usr/bin/getmesh > * /usr/bin/vecscreen > * /usr/bin/gil2bin > * /usr/bin/tbl2asn > * /usr/bin/blastcl3 > * /usr/bin/debruijn > * /usr/bin/seedtop > * /usr/bin/Psequin > * /usr/bin/fastacmd > * /usr/bin/makemat > * /usr/bin/entrez2 > * /usr/bin/testobj > * /usr/bin/dosimple > * /usr/bin/bl2seq > * /usr/bin/makeset > * /usr/bin/idfetch > * /usr/bin/getpub > * /usr/bin/errhdr > * /usr/bin/test_regexp > * /usr/bin/taxblast > * /usr/bin/copymat > * /usr/bin/udv > * /usr/bin/asn2asn > * /usr/bin/ddv > * /usr/bin/blastclust > * /usr/bin/ncbisort > * /usr/bin/asndhuff > * /usr/bin/asn2all > * /usr/bin/findspl > * /usr/bin/indexpub > * /usr/bin/formatrpsdb > * /usr/bin/rpsblast > > [32;01m*[39;49;00m checking 913 files for package collisions >>>> Merging sci-biology/ncbi-tools-2.2.26 to / >--- /usr/ >--- /usr/include/ >--- /usr/include/ncbi/ >>>> /usr/include/ncbi/mmdbapi3.h >>>> /usr/include/ncbi/smith_waterman.h >>>> /usr/include/ncbi/seqpcc.h >>>> /usr/include/ncbi/pubdesc.h >>>> /usr/include/ncbi/acerdapi.h >>>> /usr/include/ncbi/pcreposix.h >>>> /usr/include/ncbi/pobutil.h >>>> /usr/include/ncbi/urkfltr.h >>>> /usr/include/ncbi/corematx.h >>>> /usr/include/ncbi/asnfdef.h >>>> /usr/include/ncbi/seqsplit.h >>>> /usr/include/ncbi/legend.h >>>> /usr/include/ncbi/gifgen.h >>>> /usr/include/ncbi/taxuerr.h >>>> /usr/include/ncbi/objsset.h >>>> /usr/include/ncbi/prtgene.h >>>> /usr/include/ncbi/gapxdrop.h >>>> /usr/include/ncbi/splutil.h >>>> /usr/include/ncbi/a2ferrdf.h >>>> /usr/include/ncbi/cdnewlib.h >>>> /usr/include/ncbi/ncbibs.h >>>> /usr/include/ncbi/objmgr.h >>>> /usr/include/ncbi/seqpanel.h >>>> /usr/include/ncbi/netscape.h >>>> /usr/include/ncbi/OptimizationEnd.h >>>> /usr/include/ncbi/blastpri.h >>>> /usr/include/ncbi/tsprintf.h >>>> /usr/include/ncbi/objvalid.h >>>> /usr/include/ncbi/cddutil.h >>>> /usr/include/ncbi/taxutil.h >>>> /usr/include/ncbi/salogif.h >>>> /usr/include/ncbi/ncbidraw.h >>>> /usr/include/ncbi/vibmouse.h >>>> /usr/include/ncbi/asnmim.h >>>> /usr/include/ncbi/objmmdb1.h >>>> /usr/include/ncbi/seed.h >>>> /usr/include/ncbi/asnfeat.h >>>> /usr/include/ncbi/asnres.h >>>> /usr/include/ncbi/diagnost.h >>>> /usr/include/ncbi/dvncode.h >>>> /usr/include/ncbi/bspview.h >>>> /usr/include/ncbi/objmmdb3.h >>>> /usr/include/ncbi/cn3dentr.h >>>> /usr/include/ncbi/asn2ffg.h >>>> /usr/include/ncbi/showalignwrap.h >>>> /usr/include/ncbi/db_list.h >>>> /usr/include/ncbi/ncbiport.h >>>> /usr/include/ncbi/objtax1.h >>>> /usr/include/ncbi/asnsubmt.h >>>> /usr/include/ncbi/salutil.h >>>> /usr/include/ncbi/taxext.h >>>> /usr/include/ncbi/salpedit.h >>>> /usr/include/ncbi/valapi.h >>>> /usr/include/ncbi/mmdbdata.h >>>> /usr/include/ncbi/vast2mage.h >>>> /usr/include/ncbi/cdconfig.h >>>> /usr/include/ncbi/spell.h >>>> /usr/include/ncbi/asninsdseq.h >>>> /usr/include/ncbi/asnblock.h >>>> /usr/include/ncbi/id1gen.h >>>> /usr/include/ncbi/posit.h >>>> /usr/include/ncbi/ncbimisc.h >>>> /usr/include/ncbi/asnneten.h >>>> /usr/include/ncbi/ncbilang.h >>>> /usr/include/ncbi/udvdef.h >>>> /usr/include/ncbi/sugmap.h >>>> /usr/include/ncbi/jsavlt.h >>>> /usr/include/ncbi/MoreCarbonAccessors.h >>>> /usr/include/ncbi/cn3dopen.h >>>> /usr/include/ncbi/objinsdseq.h >>>> /usr/include/ncbi/asnalign.h >>>> /usr/include/ncbi/netentr.h >>>> /usr/include/ncbi/aliread.h >>>> /usr/include/ncbi/asn2ffp.h >>>> /usr/include/ncbi/asnacces.h >>>> /usr/include/ncbi/biosrc.h >>>> /usr/include/ncbi/objblst3.h >>>> /usr/include/ncbi/lsqfetch.h >>>> /usr/include/ncbi/objloc.h >>>> /usr/include/ncbi/stsutil.h >>>> /usr/include/ncbi/id1.h >>>> /usr/include/ncbi/asnmacro.h >>>> /usr/include/ncbi/saledit.h >>>> /usr/include/ncbi/ncbilcl.h >>>> /usr/include/ncbi/asngbseq.h >>>> /usr/include/ncbi/medarch.h >--- /usr/include/ncbi/algo/ >--- /usr/include/ncbi/algo/blast/ >--- /usr/include/ncbi/algo/blast/composition_adjustment/ >>>> /usr/include/ncbi/algo/blast/composition_adjustment/smith_waterman.h >>>> /usr/include/ncbi/algo/blast/composition_adjustment/composition_constants.h >>>> /usr/include/ncbi/algo/blast/composition_adjustment/matrix_frequency_data.h >>>> /usr/include/ncbi/algo/blast/composition_adjustment/redo_alignment.h >>>> /usr/include/ncbi/algo/blast/composition_adjustment/compo_mode_condition.h >>>> /usr/include/ncbi/algo/blast/composition_adjustment/unified_pvalues.h >>>> /usr/include/ncbi/algo/blast/composition_adjustment/composition_adjustment.h >>>> /usr/include/ncbi/algo/blast/composition_adjustment/nlm_linear_algebra.h >>>> /usr/include/ncbi/algo/blast/composition_adjustment/optimize_target_freq.h >>>> /usr/include/ncbi/algo/blast/composition_adjustment/compo_heap.h >--- /usr/include/ncbi/algo/blast/core/ >>>> /usr/include/ncbi/algo/blast/core/gapinfo.h >>>> /usr/include/ncbi/algo/blast/core/blast_posit.h >>>> /usr/include/ncbi/algo/blast/core/blast_setup.h >>>> /usr/include/ncbi/algo/blast/core/hspfilter_collector.h >>>> /usr/include/ncbi/algo/blast/core/blast_stat.h >>>> /usr/include/ncbi/algo/blast/core/blast_psi_priv.h >>>> /usr/include/ncbi/algo/blast/core/blast_seqsrc.h >>>> /usr/include/ncbi/algo/blast/core/ncbi_std.h >>>> /usr/include/ncbi/algo/blast/core/matrix_freq_ratios.h >>>> /usr/include/ncbi/algo/blast/core/blast_encoding.h >>>> /usr/include/ncbi/algo/blast/core/blast_aascan.h >>>> /usr/include/ncbi/algo/blast/core/link_hsps.h >>>> /usr/include/ncbi/algo/blast/core/blast_query_info.h >>>> /usr/include/ncbi/algo/blast/core/blast_hspstream.h >>>> /usr/include/ncbi/algo/blast/core/lookup_wrap.h >>>> /usr/include/ncbi/algo/blast/core/blast_parameters.h >>>> /usr/include/ncbi/algo/blast/core/blast_program.h >>>> /usr/include/ncbi/algo/blast/core/blast_seqsrc_impl.h >>>> /usr/include/ncbi/algo/blast/core/blast_gapalign_priv.h >>>> /usr/include/ncbi/algo/blast/core/blast_dynarray.h >>>> /usr/include/ncbi/algo/blast/core/blast_nalookup.h >>>> /usr/include/ncbi/algo/blast/core/index_ungapped.h >>>> /usr/include/ncbi/algo/blast/core/blast_tune.h >>>> /usr/include/ncbi/algo/blast/core/blast_traceback.h >>>> /usr/include/ncbi/algo/blast/core/blast_hits.h >>>> /usr/include/ncbi/algo/blast/core/blast_rps.h >>>> /usr/include/ncbi/algo/blast/core/blast_lookup.h >>>> /usr/include/ncbi/algo/blast/core/blast_sw.h >>>> /usr/include/ncbi/algo/blast/core/blast_nascan.h >>>> /usr/include/ncbi/algo/blast/core/blast_message.h >>>> /usr/include/ncbi/algo/blast/core/blast_diagnostics.h >>>> /usr/include/ncbi/algo/blast/core/blast_filter.h >>>> /usr/include/ncbi/algo/blast/core/phi_gapalign.h >>>> /usr/include/ncbi/algo/blast/core/phi_extend.h >>>> /usr/include/ncbi/algo/blast/core/blast_aalookup.h >>>> /usr/include/ncbi/algo/blast/core/blast_seg.h >>>> /usr/include/ncbi/algo/blast/core/blast_gapalign.h >>>> /usr/include/ncbi/algo/blast/core/gencode_singleton.h >>>> /usr/include/ncbi/algo/blast/core/blast_hits_priv.h >>>> /usr/include/ncbi/algo/blast/core/phi_lookup.h >>>> /usr/include/ncbi/algo/blast/core/blast_itree.h >>>> /usr/include/ncbi/algo/blast/core/greedy_align.h >>>> /usr/include/ncbi/algo/blast/core/ncbi_math.h >>>> /usr/include/ncbi/algo/blast/core/pattern_priv.h >>>> /usr/include/ncbi/algo/blast/core/aa_ungapped.h >>>> /usr/include/ncbi/algo/blast/core/blast_psi.h >>>> /usr/include/ncbi/algo/blast/core/blast_extend.h >>>> /usr/include/ncbi/algo/blast/core/blast_util.h >>>> /usr/include/ncbi/algo/blast/core/blast_hspfilter.h >>>> /usr/include/ncbi/algo/blast/core/blast_options.h >>>> /usr/include/ncbi/algo/blast/core/na_ungapped.h >>>> /usr/include/ncbi/algo/blast/core/erfc.h >>>> /usr/include/ncbi/algo/blast/core/mb_indexed_lookup.h >>>> /usr/include/ncbi/algo/blast/core/blast_def.h >>>> /usr/include/ncbi/algo/blast/core/split_query.h >>>> /usr/include/ncbi/algo/blast/core/blast_engine.h >>>> /usr/include/ncbi/algo/blast/core/hspfilter_besthit.h >>>> /usr/include/ncbi/algo/blast/core/lookup_util.h >>>> /usr/include/ncbi/algo/blast/core/pattern.h >>>> /usr/include/ncbi/algo/blast/core/blast_export.h >>>> /usr/include/ncbi/algo/blast/core/blast_toolkit.h >>>> /usr/include/ncbi/algo/blast/core/blast_kappa.h >--- /usr/include/ncbi/algo/blast/api/ >>>> /usr/include/ncbi/algo/blast/api/blast_input.h >>>> /usr/include/ncbi/algo/blast/api/twoseq_api.h >>>> /usr/include/ncbi/algo/blast/api/seqsrc_readdb.h >>>> /usr/include/ncbi/algo/blast/api/hspfilter_queue.h >>>> /usr/include/ncbi/algo/blast/api/blast_api.h >>>> /usr/include/ncbi/algo/blast/api/blast_prelim.h >>>> /usr/include/ncbi/algo/blast/api/repeats_filter.h >>>> /usr/include/ncbi/algo/blast/api/dust_filter.h >>>> /usr/include/ncbi/algo/blast/api/seqsrc_multiseq.h >>>> /usr/include/ncbi/algo/blast/api/blast_seq.h >>>> /usr/include/ncbi/algo/blast/api/blast_format.h >>>> /usr/include/ncbi/algo/blast/api/blast_message_api.h >>>> /usr/include/ncbi/algo/blast/api/blast_mtlock.h >>>> /usr/include/ncbi/algo/blast/api/blast_seqalign.h >>>> /usr/include/ncbi/algo/blast/api/blast_returns.h >>>> /usr/include/ncbi/algo/blast/api/blast_tabular.h >>>> /usr/include/ncbi/algo/blast/api/blast_options_api.h >>>> /usr/include/ncbi/algorend.h >>>> /usr/include/ncbi/mlkludge.h >>>> /usr/include/ncbi/objmime.h >>>> /usr/include/ncbi/ni_defin.h >>>> /usr/include/ncbi/viewer.h >>>> /usr/include/ncbi/accutils.h >>>> /usr/include/ncbi/mappubme.h >>>> /usr/include/ncbi/toporg.h >>>> /usr/include/ncbi/odlbox.h >>>> /usr/include/ncbi/readdb.h >>>> /usr/include/ncbi/ni_types.h >>>> /usr/include/ncbi/image.h >>>> /usr/include/ncbi/seqmgr.h >>>> /usr/include/ncbi/asn2ff6.h >>>> /usr/include/ncbi/objcn3d.h >>>> /usr/include/ncbi/id2.h >>>> /usr/include/ncbi/objacces.h >>>> /usr/include/ncbi/objentgene.h >>>> /usr/include/ncbi/udvseq.h >--- /usr/include/ncbi/connect/ >>>> /usr/include/ncbi/connect/ncbi_connector.h >>>> /usr/include/ncbi/connect/ncbi_gnutls.h >>>> /usr/include/ncbi/connect/ncbi_priv.h >>>> /usr/include/ncbi/connect/ncbi_host_infop.h >>>> /usr/include/ncbi/connect/ncbi_util.h >>>> /usr/include/ncbi/connect/ncbi_memory_connector.h >>>> /usr/include/ncbi/connect/ncbi_lb.h >>>> /usr/include/ncbi/connect/ncbi_host_info.h >>>> /usr/include/ncbi/connect/ncbi_ansi_ext.h >>>> /usr/include/ncbi/connect/ncbi_local.h >>>> /usr/include/ncbi/connect/ncbi_buffer.h >>>> /usr/include/ncbi/connect/ncbi_socket_connector.h >>>> /usr/include/ncbi/connect/ncbi_http_connector.h >>>> /usr/include/ncbi/connect/ncbi_connection.h >>>> /usr/include/ncbi/connect/ncbi_comm.h >>>> /usr/include/ncbi/connect/ncbi_config.h >>>> /usr/include/ncbi/connect/ncbi_ftp_connector.h >>>> /usr/include/ncbi/connect/connect_export.h >>>> /usr/include/ncbi/connect/ncbi_service.h >>>> /usr/include/ncbi/connect/ncbi_sendmail.h >>>> /usr/include/ncbi/connect/ncbi_server_info.h >>>> /usr/include/ncbi/connect/ncbi_server_infop.h >>>> /usr/include/ncbi/connect/ncbi_connutil.h >>>> /usr/include/ncbi/connect/ncbi_version.h >>>> /usr/include/ncbi/connect/ncbi_core.h >>>> /usr/include/ncbi/connect/ncbi_dispd.h >>>> /usr/include/ncbi/connect/ncbi_service_connector.h >>>> /usr/include/ncbi/connect/ncbi_socket.h >>>> /usr/include/ncbi/connect/ncbi_servicep.h >>>> /usr/include/ncbi/connect/ncbi_types.h >>>> /usr/include/ncbi/connect/ncbi_heapmgr.h >>>> /usr/include/ncbi/connect/ncbi_file_connector.h >>>> /usr/include/ncbi/connect/ncbi_socket_unix.h >>>> /usr/include/ncbi/connect/ncbi_base64.h >>>> /usr/include/ncbi/connect/ncbi_assert.h >>>> /usr/include/ncbi/connect/ncbi_socketp.h >>>> /usr/include/ncbi/connect/ncbi_connssl.h >>>> /usr/include/ncbi/connect/ncbi_lbsmd.h >>>> /usr/include/ncbi/connect/ncbi_core_c.h >>>> /usr/include/ncbi/suggest.h >>>> /usr/include/ncbi/FSpCompat.h >>>> /usr/include/ncbi/asntax1.h >>>> /usr/include/ncbi/ingengraph.h >>>> /usr/include/ncbi/simple.h >>>> /usr/include/ncbi/valid.h >>>> /usr/include/ncbi/ni_net.h >>>> /usr/include/ncbi/vsmfile.h >>>> /usr/include/ncbi/suggen.h >>>> /usr/include/ncbi/ncbiwww.h >>>> /usr/include/ncbi/objmacro.h >>>> /usr/include/ncbi/seqport.h >>>> /usr/include/ncbi/dotseq.h >>>> /usr/include/ncbi/blastconcat.h >>>> /usr/include/ncbi/vibfltr.h >>>> /usr/include/ncbi/blocks.h >>>> /usr/include/ncbi/bxmlobj.h >>>> /usr/include/ncbi/asn2graphic.h >>>> /usr/include/ncbi/pcre_internal.h >>>> /usr/include/ncbi/seqgrphx.h >>>> /usr/include/ncbi/urksigu.h >>>> /usr/include/ncbi/urkptpf.h >>>> /usr/include/ncbi/asn.h >>>> /usr/include/ncbi/vibrgb.h >>>> /usr/include/ncbi/toasn3.h >>>> /usr/include/ncbi/netlib.h >>>> /usr/include/ncbi/matrix.h >>>> /usr/include/ncbi/findrepl.h >>>> /usr/include/ncbi/explore.h >>>> /usr/include/ncbi/vecscrn.h >>>> /usr/include/ncbi/vastsrv.h >>>> /usr/include/ncbi/mmdblocl.h >>>> /usr/include/ncbi/composition_constants.h >>>> /usr/include/ncbi/ncbitime.h >>>> /usr/include/ncbi/id2gen.h >>>> /usr/include/ncbi/medview.h >>>> /usr/include/ncbi/layout.h >>>> /usr/include/ncbi/entrez2.h >>>> /usr/include/ncbi/asntable.h >>>> /usr/include/ncbi/viewerp.h >>>> /usr/include/ncbi/gbparlex.h >>>> /usr/include/ncbi/prunebsc.h >>>> /usr/include/ncbi/tfuns.h >>>> /usr/include/ncbi/subutil.h >>>> /usr/include/ncbi/ncbisami.h >>>> /usr/include/ncbi/wwwblast.h >>>> /usr/include/ncbi/treeview.h >>>> /usr/include/ncbi/all.h >>>> /usr/include/ncbi/ncbistd.h >>>> /usr/include/ncbi/urkcnsrt.h >>>> /usr/include/ncbi/ddvclick.h >>>> /usr/include/ncbi/objalign.h >>>> /usr/include/ncbi/objentr.h >>>> /usr/include/ncbi/strucapi.h >>>> /usr/include/ncbi/vast2pdb.h >>>> /usr/include/ncbi/ncbimem.h >>>> /usr/include/ncbi/salprop.h >>>> /usr/include/ncbi/fastadl.h >>>> /usr/include/ncbi/a2ferr.h >>>> /usr/include/ncbi/cdromlib.h >>>> /usr/include/ncbi/cn3d.h >>>> /usr/include/ncbi/asn2gnbp.h >>>> /usr/include/ncbi/objtable.h >>>> /usr/include/ncbi/vibtypes.h >>>> /usr/include/ncbi/salstruc.h >>>> /usr/include/ncbi/pcre.h >>>> /usr/include/ncbi/samutil.h >>>> /usr/include/ncbi/vibdefns.h >>>> /usr/include/ncbi/undefwin.h >>>> /usr/include/ncbi/gbfeat.h >>>> /usr/include/ncbi/objtseq.h >>>> /usr/include/ncbi/blastdef.h >>>> /usr/include/ncbi/blfmtutl.h >>>> /usr/include/ncbi/qblastapi.h >>>> /usr/include/ncbi/ingenext.h >>>> /usr/include/ncbi/mblast.h >>>> /usr/include/ncbi/satutil.h >>>> /usr/include/ncbi/salptool.h >>>> /usr/include/ncbi/suggslp.h >>>> /usr/include/ncbi/asncode.h >>>> /usr/include/ncbi/urkpcc.h >--- /usr/include/ncbi/ctools/ >>>> /usr/include/ncbi/ctools/error_codes.h >>>> /usr/include/ncbi/ctools/asn_connection.h >>>> /usr/include/ncbi/mapgene.h >>>> /usr/include/ncbi/MoreFilesX.h >>>> /usr/include/ncbi/ncbierr.h >>>> /usr/include/ncbi/actutils.h >>>> /usr/include/ncbi/scoremat.h >>>> /usr/include/ncbi/mmdbapi4.h >>>> /usr/include/ncbi/urkdust.h >>>> /usr/include/ncbi/cdentrez.h >>>> /usr/include/ncbi/asnprt.h >>>> /usr/include/ncbi/asnpub.h >>>> /usr/include/ncbi/ddvmain.h >>>> /usr/include/ncbi/cddposutil.h >>>> /usr/include/ncbi/entrez.h >>>> /usr/include/ncbi/treemgr.h >>>> /usr/include/ncbi/blast.h >>>> /usr/include/ncbi/ni_error.h >>>> /usr/include/ncbi/tofile.h >>>> /usr/include/ncbi/id1arch.h >>>> /usr/include/ncbi/mapproj.h >>>> /usr/include/ncbi/mappingp.h >>>> /usr/include/ncbi/ncbisrti.h >>>> /usr/include/ncbi/macrodlg.h >>>> /usr/include/ncbi/matrix_frequency_data.h >>>> /usr/include/ncbi/vibtree.h >>>> /usr/include/ncbi/asnmdrs.h >>>> /usr/include/ncbi/saled.h >>>> /usr/include/ncbi/fdlobj.h >>>> /usr/include/ncbi/salpstat.h >>>> /usr/include/ncbi/rpsutil.h >>>> /usr/include/ncbi/objall.h >>>> /usr/include/ncbi/ncbimain.h >>>> /usr/include/ncbi/tofasta.h >>>> /usr/include/ncbi/vast2cn3d.h >>>> /usr/include/ncbi/ncbigif.h >>>> /usr/include/ncbi/gxydraw.h >>>> /usr/include/ncbi/document.h >>>> /usr/include/ncbi/mimapi.h >>>> /usr/include/ncbi/list.h >>>> /usr/include/ncbi/maputil.h >>>> /usr/include/ncbi/glbpic.h >>>> /usr/include/ncbi/ncbienv.h >>>> /usr/include/ncbi/tree.h >>>> /usr/include/ncbi/seqsub.h >>>> /usr/include/ncbi/import.h >>>> /usr/include/ncbi/gbftdef.h >>>> /usr/include/ncbi/pgppop.h >>>> /usr/include/ncbi/edutil.h >>>> /usr/include/ncbi/asnmime.h >>>> /usr/include/ncbi/ncbisort.h >>>> /usr/include/ncbi/ncbisgml.h >>>> /usr/include/ncbi/cdrom.h >>>> /usr/include/ncbi/xmlblast.h >>>> /usr/include/ncbi/blast_dust.h >>>> /usr/include/ncbi/picturep.h >>>> /usr/include/ncbi/mapmime.h >>>> /usr/include/ncbi/dlogutil.h >>>> /usr/include/ncbi/asntseq.h >>>> /usr/include/ncbi/cn3dsave.h >>>> /usr/include/ncbi/mdrcherr.h >>>> /usr/include/ncbi/netcnfg.h >>>> /usr/include/ncbi/urkutil.h >>>> /usr/include/ncbi/fstyle.h >>>> /usr/include/ncbi/objfeat.h >>>> /usr/include/ncbi/PubStructAsn.h >>>> /usr/include/ncbi/valdlg.h >>>> /usr/include/ncbi/sequtil.h >>>> /usr/include/ncbi/id1map.h >>>> /usr/include/ncbi/asnent2.h >>>> /usr/include/ncbi/pcre_config.h >>>> /usr/include/ncbi/cn3dmain.h >>>> /usr/include/ncbi/sqnutils.h >>>> /usr/include/ncbi/vibforms.h >>>> /usr/include/ncbi/ddvpanel.h >>>> /usr/include/ncbi/urlquery.h >>>> /usr/include/ncbi/mconsist.h >>>> /usr/include/ncbi/ftusrstr.h >>>> /usr/include/ncbi/mbalign.h >>>> /usr/include/ncbi/FullPath.h >>>> /usr/include/ncbi/ncbisam.h >>>> /usr/include/ncbi/id2sgen.h >>>> /usr/include/ncbi/dust.h >>>> /usr/include/ncbi/objspell.h >>>> /usr/include/ncbi/ni_lib_.h >>>> /usr/include/ncbi/objalignloc.h >>>> /usr/include/ncbi/objmmdb2.h >>>> /usr/include/ncbi/viewmgr.h >>>> /usr/include/ncbi/seqmtrx.h >>>> /usr/include/ncbi/egkludge.h >>>> /usr/include/ncbi/sec.h >>>> /usr/include/ncbi/ncbiprop.h >>>> /usr/include/ncbi/gphdraw.h >>>> /usr/include/ncbi/needleman.h >>>> /usr/include/ncbi/objgen.h >>>> /usr/include/ncbi/cddapi.h >>>> /usr/include/ncbi/mapcn3d.h >>>> /usr/include/ncbi/ddvcreate.h >>>> /usr/include/ncbi/jzcoll.h >>>> /usr/include/ncbi/seqcons.h >>>> /usr/include/ncbi/mkbioseq.h >>>> /usr/include/ncbi/alignmgr2.h >>>> /usr/include/ncbi/urkbias.h >>>> /usr/include/ncbi/vibgraph.h >>>> /usr/include/ncbi/redo_alignment.h >>>> /usr/include/ncbi/panels.h >>>> /usr/include/ncbi/ncbi.h >>>> /usr/include/ncbi/ncbithr.h >>>> /usr/include/ncbi/objblock.h >>>> /usr/include/ncbi/pmfapi.h >>>> /usr/include/ncbi/casn.h >>>> /usr/include/ncbi/netpriv.h >>>> /usr/include/ncbi/ncbimsg.h >>>> /usr/include/ncbi/objpubd.h >>>> /usr/include/ncbi/alignval.h >>>> /usr/include/ncbi/cn3dmodl.h >>>> /usr/include/ncbi/tomedlin.h >>>> /usr/include/ncbi/salsa.h >>>> /usr/include/ncbi/alignloc.h >>>> /usr/include/ncbi/cn3dxprt.h >>>> /usr/include/ncbi/objmla2.h >>>> /usr/include/ncbi/objprt.h >>>> /usr/include/ncbi/seqanal.h >>>> /usr/include/ncbi/urkgraph.h >>>> /usr/include/ncbi/pdiagnos.h >>>> /usr/include/ncbi/apparam.h >>>> /usr/include/ncbi/objproj.h >>>> /usr/include/ncbi/blastkar.h >>>> /usr/include/ncbi/compo_mode_condition.h >>>> /usr/include/ncbi/objmim.h >>>> /usr/include/ncbi/pictur3d.h >>>> /usr/include/ncbi/objtax3.h >>>> /usr/include/ncbi/puberr.h >>>> /usr/include/ncbi/aceread.h >>>> /usr/include/ncbi/asnsset.h >>>> /usr/include/ncbi/ncbinet.h >>>> /usr/include/ncbi/cn3dmsg.h >>>> /usr/include/ncbi/profiles.h >>>> /usr/include/ncbi/fea2seg.h >>>> /usr/include/ncbi/asnmedli.h >>>> /usr/include/ncbi/ppict3d.h >>>> /usr/include/ncbi/sugprefx.h >>>> /usr/include/ncbi/vibmain.h >>>> /usr/include/ncbi/objpub.h >>>> /usr/include/ncbi/thrddecl.h >>>> /usr/include/ncbi/asnloc.h >>>> /usr/include/ncbi/prtutil.h >>>> /usr/include/ncbi/spidey.h >>>> /usr/include/ncbi/objegkludge.h >>>> /usr/include/ncbi/objscoremat.h >>>> /usr/include/ncbi/asn2gnbk.h >>>> /usr/include/ncbi/MoreFilesExtras.h >>>> /usr/include/ncbi/gather.h >>>> /usr/include/ncbi/parsegb.h >>>> /usr/include/ncbi/taxblast.h >>>> /usr/include/ncbi/objgbseq.h >>>> /usr/include/ncbi/txclient.h >>>> /usr/include/ncbi/shim3d.h >>>> /usr/include/ncbi/netblap3.h >>>> /usr/include/ncbi/cn3dshim.h >>>> /usr/include/ncbi/vsmutil.h >>>> /usr/include/ncbi/imagelst.h >>>> /usr/include/ncbi/allpub.h >>>> /usr/include/ncbi/lnfac.h >>>> /usr/include/ncbi/simutil.h >>>> /usr/include/ncbi/binary.h >>>> /usr/include/ncbi/blastconcatdef.h >>>> /usr/include/ncbi/aacomp.h >>>> /usr/include/ncbi/spellapi.h >>>> /usr/include/ncbi/bandalgn.h >>>> /usr/include/ncbi/blstspc.h >>>> /usr/include/ncbi/urktree.h >>>> /usr/include/ncbi/mmdb2.h >>>> /usr/include/ncbi/codon.h >>>> /usr/include/ncbi/id2map.h >>>> /usr/include/ncbi/dotmatrx.h >>>> /usr/include/ncbi/ni_lib.h >>>> /usr/include/ncbi/seqfltr.h >>>> /usr/include/ncbi/medutil.h >>>> /usr/include/ncbi/salfiles.h >>>> /usr/include/ncbi/ffprint.h >>>> /usr/include/ncbi/asntaxon.h >>>> /usr/include/ncbi/thrdatd.h >>>> /usr/include/ncbi/vastlocl.h >>>> /usr/include/ncbi/txcommon.h >--- /usr/include/ncbi/util/ >--- /usr/include/ncbi/util/creaders/ >>>> /usr/include/ncbi/util/creaders/creaders_export.h >>>> /usr/include/ncbi/util/creaders/alnread.h >--- /usr/include/ncbi/util/tables/ >>>> /usr/include/ncbi/util/tables/raw_scoremat.h >>>> /usr/include/ncbi/util/tables/tables_export.h >>>> /usr/include/ncbi/mmdbapi2.h >>>> /usr/include/ncbi/taxon1.h >>>> /usr/include/ncbi/mmdb3.h >>>> /usr/include/ncbi/ncbiopt.h >>>> /usr/include/ncbi/ddvgraph.h >>>> /usr/include/ncbi/asnid0.h >>>> /usr/include/ncbi/ncbimath.h >>>> /usr/include/ncbi/salmedia.h >>>> /usr/include/ncbi/alignmgr.h >>>> /usr/include/ncbi/objmdrs.h >>>> /usr/include/ncbi/regex.h >>>> /usr/include/ncbi/drawseq.h >>>> /usr/include/ncbi/salsap.h >>>> /usr/include/ncbi/objsub.h >>>> /usr/include/ncbi/treevint.h >>>> /usr/include/ncbi/objseq.h >>>> /usr/include/ncbi/sdisplay.h >>>> /usr/include/ncbi/salign.h >>>> /usr/include/ncbi/salparam.h >>>> /usr/include/ncbi/udviewer.h >>>> /usr/include/ncbi/accid1.h >>>> /usr/include/ncbi/aliparse.h >>>> /usr/include/ncbi/cdrgn.h >>>> /usr/include/ncbi/asntax3.h >>>> /usr/include/ncbi/tax1map.h >>>> /usr/include/ncbi/accentr.h >>>> /usr/include/ncbi/asnmla2.h >>>> /usr/include/ncbi/saldist.h >>>> /usr/include/ncbi/unified_pvalues.h >>>> /usr/include/ncbi/ncbifile.h >>>> /usr/include/ncbi/vsm.h >>>> /usr/include/ncbi/terr.h >>>> /usr/include/ncbi/jzmisc.h >>>> /usr/include/ncbi/mmdbapi1.h >>>> /usr/include/ncbi/salpacc.h >>>> /usr/include/ncbi/drawingp.h >>>> /usr/include/ncbi/dotviewer.h >>>> /usr/include/ncbi/mmdb1.h >>>> /usr/include/ncbi/asnmla.h >>>> /usr/include/ncbi/asnpubme.h >>>> /usr/include/ncbi/asn2graphicp.h >>>> /usr/include/ncbi/a2fstruc.h >>>> /usr/include/ncbi/utilpub.h >>>> /usr/include/ncbi/asnvalid.h >>>> /usr/include/ncbi/objcode.h >>>> /usr/include/ncbi/composition_adjustment.h >>>> /usr/include/ncbi/asnbibli.h >>>> /usr/include/ncbi/blstxml.h >>>> /usr/include/ncbi/vibrant.h >>>> /usr/include/ncbi/asn2gnbi.h >>>> /usr/include/ncbi/errdefn.h >>>> /usr/include/ncbi/fstylep.h >>>> /usr/include/ncbi/tax3api.h >>>> /usr/include/ncbi/seqgraph.h >>>> /usr/include/ncbi/cn3dmsel.h >>>> /usr/include/ncbi/cdd.h >>>> /usr/include/ncbi/objbibli.h >>>> /usr/include/ncbi/asnseq.h >>>> /usr/include/ncbi/salpanel.h >>>> /usr/include/ncbi/mmdbapi.h >>>> /usr/include/ncbi/objcdd.h >>>> /usr/include/ncbi/validatr.h >>>> /usr/include/ncbi/asn2ff.h >>>> /usr/include/ncbi/ddvcolor.h >>>> /usr/include/ncbi/seg.h >>>> /usr/include/ncbi/objneten.h >>>> /usr/include/ncbi/viewer3d.h >>>> /usr/include/ncbi/cn3dmesh.h >>>> /usr/include/ncbi/macroapi.h >>>> /usr/include/ncbi/urkepi.h >>>> /usr/include/ncbi/objfdef.h >>>> /usr/include/ncbi/mapmla.h >>>> /usr/include/ncbi/taxinc.h >>>> /usr/include/ncbi/asnproj.h >>>> /usr/include/ncbi/asngen.h >>>> /usr/include/ncbi/vibprocs.h >>>> /usr/include/ncbi/validerr.h >>>> /usr/include/ncbi/lookup.h >>>> /usr/include/ncbi/txalign.h >>>> /usr/include/ncbi/ddvopen.h >>>> /usr/include/ncbi/vibpcc.h >>>> /usr/include/ncbi/strimprt.h >>>> /usr/include/ncbi/utilpars.h >>>> /usr/include/ncbi/objres.h >>>> /usr/include/ncbi/picture.h >>>> /usr/include/ncbi/vecscnapi.h >>>> /usr/include/ncbi/objent2.h >>>> /usr/include/ncbi/blastpat.h >>>> /usr/include/ncbi/ent2api.h >>>> /usr/include/ncbi/suggapi.h >>>> /usr/include/ncbi/gtrdraw.h >>>> /usr/include/ncbi/vibincld.h >>>> /usr/include/ncbi/seqscrl.h >>>> /usr/include/ncbi/asnentgene.h >>>> /usr/include/ncbi/fdlKludge.h >>>> /usr/include/ncbi/objmla.h >>>> /usr/include/ncbi/objmedli.h >>>> /usr/include/ncbi/objpubme.h >>>> /usr/include/ncbi/nlm_linear_algebra.h >>>> /usr/include/ncbi/ncbistr.h >>>> /usr/include/ncbi/cn3dstyl.h >>>> /usr/include/ncbi/Optimization.h >>>> /usr/include/ncbi/ncbiwin.h >>>> /usr/include/ncbi/mla2api.h >>>> /usr/include/ncbi/optimize_target_freq.h >>>> /usr/include/ncbi/ingenwin.h >>>> /usr/include/ncbi/vsmpriv.h >>>> /usr/include/ncbi/motif.h >>>> /usr/include/ncbi/compo_heap.h >--- /usr/bin/ >>>> /usr/bin/rpsblast >>>> /usr/bin/formatrpsdb >>>> /usr/bin/indexpub >>>> /usr/bin/findspl >>>> /usr/bin/asn2all >>>> 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>--- replaced obj /usr/include/ncbi/algo/blast/core/gapinfo.h >--- replaced obj /usr/include/ncbi/algo/blast/core/erfc.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_util.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_tune.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_traceback.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_toolkit.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_sw.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_stat.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_setup.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_seqsrc_impl.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_seqsrc.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_seg.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_rps.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_query_info.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_psi_priv.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_psi.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_program.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_posit.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_parameters.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_options.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_nascan.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_nalookup.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_message.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_lookup.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_kappa.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_itree.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_hspstream.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_hspfilter.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_hits_priv.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_hits.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_gapalign_priv.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_gapalign.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_filter.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_extend.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_export.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_engine.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_encoding.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_dynarray.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_diagnostics.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_def.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_aascan.h >--- replaced obj /usr/include/ncbi/algo/blast/core/blast_aalookup.h >--- replaced obj /usr/include/ncbi/algo/blast/core/aa_ungapped.h >--- replaced dir /usr/include/ncbi/algo/blast/core >--- replaced obj /usr/include/ncbi/algo/blast/composition_adjustment/unified_pvalues.h >--- replaced obj /usr/include/ncbi/algo/blast/composition_adjustment/smith_waterman.h >--- replaced obj /usr/include/ncbi/algo/blast/composition_adjustment/redo_alignment.h >--- replaced obj /usr/include/ncbi/algo/blast/composition_adjustment/optimize_target_freq.h >--- replaced obj /usr/include/ncbi/algo/blast/composition_adjustment/nlm_linear_algebra.h >--- replaced obj /usr/include/ncbi/algo/blast/composition_adjustment/matrix_frequency_data.h >--- replaced obj /usr/include/ncbi/algo/blast/composition_adjustment/composition_constants.h >--- replaced obj /usr/include/ncbi/algo/blast/composition_adjustment/composition_adjustment.h >--- replaced obj /usr/include/ncbi/algo/blast/composition_adjustment/compo_mode_condition.h >--- replaced obj /usr/include/ncbi/algo/blast/composition_adjustment/compo_heap.h >--- replaced dir /usr/include/ncbi/algo/blast/composition_adjustment >--- replaced obj /usr/include/ncbi/algo/blast/api/twoseq_api.h >--- replaced obj /usr/include/ncbi/algo/blast/api/seqsrc_readdb.h >--- replaced obj /usr/include/ncbi/algo/blast/api/seqsrc_multiseq.h >--- replaced obj /usr/include/ncbi/algo/blast/api/repeats_filter.h >--- replaced obj /usr/include/ncbi/algo/blast/api/hspfilter_queue.h >--- replaced obj /usr/include/ncbi/algo/blast/api/dust_filter.h >--- replaced obj /usr/include/ncbi/algo/blast/api/blast_tabular.h >--- replaced obj /usr/include/ncbi/algo/blast/api/blast_seqalign.h >--- replaced obj /usr/include/ncbi/algo/blast/api/blast_seq.h >--- replaced obj /usr/include/ncbi/algo/blast/api/blast_returns.h >--- replaced obj /usr/include/ncbi/algo/blast/api/blast_prelim.h >--- replaced obj /usr/include/ncbi/algo/blast/api/blast_options_api.h >--- replaced obj /usr/include/ncbi/algo/blast/api/blast_mtlock.h >--- replaced obj /usr/include/ncbi/algo/blast/api/blast_message_api.h >--- replaced obj /usr/include/ncbi/algo/blast/api/blast_input.h >--- replaced obj /usr/include/ncbi/algo/blast/api/blast_format.h >--- replaced obj /usr/include/ncbi/algo/blast/api/blast_api.h >--- replaced dir /usr/include/ncbi/algo/blast/api >--- replaced dir /usr/include/ncbi/algo/blast >--- replaced dir /usr/include/ncbi/algo >--- replaced obj /usr/include/ncbi/actutils.h >--- replaced obj /usr/include/ncbi/aceread.h >--- replaced obj /usr/include/ncbi/acerdapi.h >--- replaced obj /usr/include/ncbi/accutils.h >--- replaced obj /usr/include/ncbi/accid1.h >--- replaced obj /usr/include/ncbi/accentr.h >--- replaced obj /usr/include/ncbi/aacomp.h >--- replaced obj /usr/include/ncbi/a2fstruc.h >--- replaced obj /usr/include/ncbi/a2ferrdf.h >--- replaced obj /usr/include/ncbi/a2ferr.h >--- replaced obj /usr/include/ncbi/PubStructAsn.h >--- replaced obj /usr/include/ncbi/OptimizationEnd.h >--- replaced obj /usr/include/ncbi/Optimization.h >--- replaced obj /usr/include/ncbi/MoreFilesX.h >--- replaced obj /usr/include/ncbi/MoreFilesExtras.h >--- replaced obj /usr/include/ncbi/MoreCarbonAccessors.h >--- replaced obj /usr/include/ncbi/FullPath.h >--- replaced obj /usr/include/ncbi/FSpCompat.h >--- replaced dir /usr/include/ncbi >--- replaced dir /usr/include >--- replaced obj /usr/bin/vecscreen >--- replaced obj /usr/bin/udv >--- replaced obj /usr/bin/testval >--- replaced obj /usr/bin/testobj >--- replaced obj /usr/bin/testcore >--- replaced obj /usr/bin/test_regexp >--- replaced obj /usr/bin/tbl2asn >--- replaced obj /usr/bin/taxblast >--- replaced obj /usr/bin/spidey >--- replaced obj /usr/bin/seqtest >--- replaced obj /usr/bin/seedtop >--- replaced obj /usr/bin/sbtedit >--- replaced obj /usr/bin/rpsblast >--- replaced obj /usr/bin/ncbisort >--- replaced obj /usr/bin/megablast >--- replaced obj /usr/bin/makeset >--- replaced obj /usr/bin/makemat >--- replaced obj /usr/bin/indexpub >--- replaced obj /usr/bin/impala >--- replaced obj /usr/bin/idfetch >--- replaced obj /usr/bin/gil2bin >--- replaced obj /usr/bin/getpub >--- replaced obj /usr/bin/getmesh >--- replaced obj /usr/bin/gene2xml >--- replaced obj /usr/bin/formatrpsdb >--- replaced obj /usr/bin/formatdb >--- replaced obj /usr/bin/findspl >--- replaced obj /usr/bin/fastacmd >--- replaced obj /usr/bin/fa2htgs >--- replaced obj /usr/bin/errhdr >--- replaced obj /usr/bin/entrez2 >--- replaced obj /usr/bin/entrcmd >--- replaced obj /usr/bin/dosimple >--- replaced obj /usr/bin/demo_regexp_grep >--- replaced obj /usr/bin/demo_regexp >--- replaced obj /usr/bin/debruijn >--- replaced obj /usr/bin/ddv >--- replaced obj /usr/bin/copymat >--- replaced obj /usr/bin/checksub >--- replaced obj /usr/bin/cdscan-ncbi >--- replaced obj /usr/bin/blastpgp >--- replaced obj /usr/bin/blastclust >--- replaced obj /usr/bin/blastcl3 >--- replaced obj /usr/bin/blastall >--- replaced obj /usr/bin/bl2seq >--- replaced obj /usr/bin/asntool >--- replaced obj /usr/bin/asndhuff >--- replaced obj /usr/bin/asn2xml >--- replaced obj /usr/bin/asn2idx >--- replaced obj /usr/bin/asn2gb >--- replaced obj /usr/bin/asn2ff >--- replaced obj /usr/bin/asn2asn >--- replaced obj /usr/bin/asn2all >--- replaced obj /usr/bin/Psequin >--- replaced obj /usr/bin/Nentrez >--- replaced dir /usr/bin >--- replaced dir /usr >--- replaced obj /etc/ncbi/.ncbirc >--- replaced dir /etc/ncbi >--- replaced obj /etc/env.d/21ncbi >--- replaced dir /etc/env.d >--- replaced dir /etc >>>> Regenerating /etc/ld.so.cache... >>>> Original instance of package unmerged safely. >>>> sci-biology/ncbi-tools-2.2.26 merged.
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