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Gentoo's Bugzilla – Attachment 339704 Details for
Bug 458708
sci-chemistry/avogadro 1.0.3-r1 & 1.1.0 cannot export raster graphics
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crash log
avogadro-1.1.0 (text/plain), 268.57 KB, created by
Justin Lecher (RETIRED)
on 2013-02-22 14:54:14 UTC
(
hide
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Description:
crash log
Filename:
MIME Type:
Creator:
Justin Lecher (RETIRED)
Created:
2013-02-22 14:54:14 UTC
Size:
268.57 KB
patch
obsolete
>abrt_version: 2.0.12 >cmdline: avogadro >core_backtrace: >dso_list: /usr/lib64/openbabel/2.3.2/pcmodelformat.so/usr/lib64/openbabel/2.3.2/pwscfformat.so/usr/lib64/openbabel/2.3.2/fhiaimsformat.so/usr/lib64/libxcb-render.so.0.0.0/lib64/libnss_nis-2.16.so/usr/lib64/openbabel/2.3.2/cmlreactformat.so/usr/lib64/openbabel/2.3.2/plugin_fingerprints.so/usr/lib64/qt4/plugins/imageformats/libqgif.so/usr/lib64/libXdamage.so.1.1.0/usr/lib64/openbabel/2.3.2/abinitformat.so/usr/lib64/libORBitCosNaming-2.so.0.1.0/usr/lib64/openbabel/2.3.2/yasaraformat.so/usr/share/avogadro/i18n/libavogadro_en_GB.qm/usr/lib64/openbabel/2.3.2/mpdformat.so/usr/lib64/openbabel/2.3.2/balstformat.so/usr/share/icons/gnome/icon-theme.cache/usr/lib64/openbabel/2.3.2/freefracformat.so/usr/lib64/libXext.so.6.4.0/usr/lib64/avogadro/1_1/tools/selectrotatetool.so/usr/lib64/libxml2.so.2.9.0/usr/lib64/avogadro/1_1/engines/dipoleengine.so/usr/lib64/libcairo.so.2.11200.12/usr/lib64/libjpeg.so.8.0.2/usr/lib64/openbabel/2.3.2/chemkinformat.so/usr/lib64/libXcursor.so.1.0.2/usr/lib64/avogadro/1_1/extensions/molecularpropextension.so/usr/lib64/avogadro/1_1/tools/autorotatetool.so/usr/lib64/openbabel/2.3.2/msiformat.so/usr/lib64/libbonobo-activation.so.4.0.0/usr/lib64/gtk-2.0/modules/libcanberra-gtk-module.so/usr/lib64/openbabel/2.3.2/cacheformat.so/var/cache/fontconfig/71e44b93d92c4d850a6425411914df5e-le64.cache-3/usr/lib64/openbabel/2.3.2/adfformat.so/usr/share/avogadro/i18n/avogadro_en_GB.qm/usr/lib64/openbabel/2.3.2/outformat.so/usr/lib64/libfontconfig.so.1.6.2/usr/lib64/openbabel/2.3.2/APIInterface.so/usr/lib64/openbabel/2.3.2/pngformat.so/usr/lib64/openbabel/2.3.2/CSRformat.so/usr/lib64/avogadro/1_1/extensions/hydrogensextension.so/usr/lib64/avogadro/1_1/colors/smartscolor.so/usr/lib64/libXcomposite.so.1.0.0/var/cache/fontconfig/aecded52ccf112ce9ddb976f75eab3bb-le64.cache-3/usr/lib64/openbabel/2.3.2/gamessformat.so/usr/lib64/qt4/plugins/imageformats/libqtiff.so/usr/lib64/libpangocairo-1.0.so.0.3200.5/usr/lib64/avogadro/1_1/engines/surfaceengine.so/usr/lib64/avogadro/1_1/engines/ribbonengine.so/lib64/libnss_compat-2.16.so/usr/lib64/openbabel/2.3.2/copyformat.so/usr/lib64/avogadro/1_1/extensions/shaderextension.so/usr/lib64/opengl/xorg-x11/lib/libEGL.so.1.0.0/usr/lib64/avogadro/1_1/extensions/orbitalextension.so/usr/lib64/openbabel/2.3.2/msmsformat.so/usr/lib64/avogadro/1_1/extensions/crystallographyextension.so/usr/lib64/avogadro/1_1/extensions/vibrationextension.so/usr/lib64/libXrender.so.1.3.0/usr/lib64/libcrypto.so.1.0.0/usr/lib64/gtk-2.0/2.10.0/engines/libpixmap.so/usr/lib64/libGLU.so.1.3.1/tmp/glz2iQRB (deleted)/usr/lib64/avogadro/1_1/extensions/cartesianextension.so/usr/lib64/openbabel/2.3.2/cmlformat.so/usr/lib64/libXrandr.so.2.2.0/usr/lib64/openbabel/2.3.2/xsfformat.so/usr/lib64/libltdl.so.7.3.0/usr/lib64/openbabel/2.3.2/shelxformat.so/usr/lib64/openbabel/2.3.2/gausszmatformat.so/lib64/libattr.so.1.1.0/usr/lib64/libssl.so.1.0.0/usr/lib64/avogadro/1_1/tools/manipulatetool.so/usr/lib64/libgnome-keyring.so.0.2.0/var/cache/fontconfig/580bda594161061e6ef4cc8a4db09662-le64.cache-3/usr/lib64/libicudata.so.50.1.2/usr/lib64/avogadro/1_1/extensions/qtaimextension.so/usr/share/mime/mime.cache/lib64/libc-2.16.so/usr/lib64/avogadro/1_1/tools/drawtool.so/usr/lib64/openbabel/2.3.2/pdbqtformat.so/usr/lib64/avogadro/1_1/engines/polygonengine.so/var/cache/fontconfig/17090aa38d5c6f09fb8c5c354938f1d7-le64.cache-3/usr/lib64/libpangoft2-1.0.so.0.3200.5/usr/lib64/libatk-1.0.so.0.20609.1/usr/lib64/qt4/libQtSvg.so.4.8.4/usr/lib64/qt4/plugins/imageformats/libqsvg.so/usr/lib64/libvorbisfile.so.3.3.5/usr/lib64/avogadro/1_1/engines/simplewireengine.so/var/cache/fontconfig/f349e9996a5320f6dd491cedd2b1f964-le64.cache-3/usr/lib64/libicuuc.so.50.1.2/usr/lib64/libgconf-2.so.4.1.5/usr/lib64/gnome-vfs-2.0/modules/libfile.so/usr/lib64/avogadro/1_1/colors/atomindexcolor.so/usr/lib64/libnvidia-tls.so.313.18/var/cache/fontconfig/d62e99ef547d1d24cdb1bd22ec1a2976-le64.cache-3/usr/lib64/avogadro/1_1/engines/axesengine.so/usr/lib64/openbabel/2.3.2/lmpdatformat.so/usr/lib64/openbabel/2.3.2/inchiformat.so/usr/lib64/openbabel/2.3.2/castepformat.so/usr/lib64/libicui18n.so.50.1.2/usr/lib64/libgthread-2.0.so.0.3400.3/usr/lib64/avogadro/1_1/extensions/gl2psextension.so/usr/lib64/libbonobo-2.so.0.0.0/lib64/libacl.so.1.1.0/usr/lib64/openbabel/2.3.2/hinformat.so/usr/lib64/gtk-2.0/modules/libatk-bridge.so/usr/lib64/openbabel/2.3.2/reportformat.so/usr/lib64/qt4/libQtNetwork.so.4.8.4/usr/lib64/avogadro/1_1/engines/forceengine.so/usr/share/icons/hicolor/icon-theme.cache/usr/lib64/openbabel/2.3.2/cssrformat.so/lib64/libpthread-2.16.so/var/cache/fontconfig/5dac49e74d8a3622eea6c94592a6c625-le64.cache-3/usr/lib64/openbabel/2.3.2/viewmolformat.so/usr/lib64/avogadro/1_1/engines/stickengine.so/usr/lib64/openbabel/2.3.2/rxnformat.so/usr/lib64/qt4/libQtGui.so.4.8.4/usr/lib64/avogadro/1_1/engines/labelengine.so/usr/lib64/libcanberra-gtk.so.0.1.9/lib64/libz.so.1.2.7/usr/lib64/libdbus-glib-1.so.2.2.2/var/cache/fontconfig/4467b976098fb13588b23c76ba4750d8-le64.cache-3/lib64/libm-2.16.so/usr/lib64/openbabel/2.3.2/smilesformat.so/usr/lib64/libgmodule-2.0.so.0.3400.3/usr/lib64/libgdk-x11-2.0.so.0.2400.16/var/cache/fontconfig/6ba42ae0000f58711b5caaf10d690066-le64.cache-3/usr/lib64/openbabel/2.3.2/nwchemformat.so/var/cache/fontconfig/f73c51d6200a78c2054c26a5b2398976-le64.cache-3/usr/lib64/libcanberra.so.0.2.5/usr/lib64/openbabel/2.3.2/amberformat.so/usr/lib64/qt4/plugins/imageformats/libqjpeg.so/var/cache/fontconfig/221fd1126b80b777db535aea535e87ba-le64.cache-3/usr/share/fonts/cantarell/Cantarell-Regular.otf/usr/lib64/libnvidia-glcore.so.313.18/usr/lib64/libavogadro_OpenQube.so.0.1.0/usr/lib64/openbabel/2.3.2/dmolformat.so/usr/lib64/libxcb-dri2.so.0.0.0/usr/lib64/libavogadro.so.1.1.0/lib64/libnsl-2.16.so/usr/lib64/avogadro/1_1/tools/aligntool.so/usr/lib64/openbabel/2.3.2/plugin_charges.so/lib64/libbz2.so.1.0.6/usr/lib64/openbabel/2.3.2/qchemformat.so/usr/lib64/libdrm.so.2.4.0/lib64/libdl-2.16.so/lib64/ld-2.16.so/usr/lib64/libgobject-2.0.so.0.3400.3/usr/lib64/openbabel/2.3.2/fhformat.so/usr/lib64/avogadro/1_1/extensions/h2methylextension.so/usr/lib64/gio/modules/libdconfsettings.so/usr/lib64/qt4/plugins/imageformats/libqmng.so/tmp/gldhJ5cg (deleted)/usr/lib64/openbabel/2.3.2/carformat.so/usr/lib64/openbabel/2.3.2/nulformat.so/usr/lib64/libmng.so.1.0.0/var/cache/fontconfig/f55bbeb01d684dc5b5f7b2c347cc42d9-le64.cache-3/usr/lib64/openbabel/2.3.2/fastaformat.so/usr/lib64/pango/1.8.0/modules/pango-basic-fc.so/var/cache/fontconfig/1dce2cb908b447e938fc03acd9b47fcf-le64.cache-3/usr/lib64/libpng15.so.15.14.0/usr/lib64/libgpg-error.so.0.8.0/usr/lib64/openbabel/2.3.2/textformat.so/var/cache/fontconfig/0b1bcc92b4d25cc154d77dafe3bceaa0-le64.cache-3/usr/lib64/gio/modules/libgioremote-volume-monitor.so/usr/lib64/avogadro/1_1/extensions/networkfetchextension.so/usr/lib64/qt4/libQtCore.so.4.8.4/usr/lib64/openbabel/2.3.2/dlpolyformat.so/usr/lib64/openbabel/2.3.2/pqrformat.so/usr/lib64/libharfbuzz.so.0.912.0/usr/lib64/openbabel/2.3.2/svgformat.so/usr/lib64/libXdmcp.so.6.0.0/usr/lib64/qt4/libQtOpenGL.so.4.8.4/usr/lib64/openbabel/2.3.2/titleformat.so/usr/lib64/openbabel/2.3.2/cdxmlformat.so/usr/lib64/openbabel/2.3.2/PQSformat.so/usr/lib64/libgvfscommon.so.0.0.0/usr/lib64/avogadro/1_1/extensions/propextension.so/usr/lib64/openbabel/2.3.2/xmlformat.so/usr/lib64/openbabel/2.3.2/xtcformat.so/usr/lib64/avogadro/1_1/extensions/swcntbuilderextension.so/usr/lib64/avogadro/1_1/extensions/gamessextension.so/usr/lib64/gtk-2.0/modules/libgail.so/usr/share/fonts/cantarell/Cantarell-Bold.otf/usr/lib64/openbabel/2.3.2/gamessukformat.so/usr/lib64/openbabel/2.3.2/MNAformat.so/usr/lib64/openbabel/2.3.2/gausscubeformat.so/var/cache/fontconfig/4460665c0f3e88acdd4c85aa2f409b99-le64.cache-3/lib64/libnss_files-2.16.so/usr/lib64/openbabel/2.3.2/unichemformat.so/usr/lib64/libxcb-xfixes.so.0.0.0/usr/lib64/libogg.so.0.8.0/var/cache/fontconfig/531923aa54d0b5d0a874e3141e1499d8-le64.cache-3/usr/lib64/avogadro/1_1/colors/distancecolor.so/usr/lib64/gcc/x86_64-pc-linux-gnu/4.7.2/libgcc_s.so.1/usr/lib64/openbabel/2.3.2/MCDLformat.so/var/cache/fontconfig/df311e82a1a24c41a75c2c930223552e-le64.cache-3/usr/lib64/openbabel/2.3.2/mol2format.so/usr/lib64/libgnomevfs-2.so.0.2400.4/lib64/libutil-2.16.so/usr/lib64/openbabel/2.3.2/crystal09format.so/usr/lib64/openbabel/2.3.2/acesformat.so/var/cache/fontconfig/131ab5cc1583381c4f7ce0194912c56d-le64.cache-3/var/cache/fontconfig/12b26b760a24f8b4feb03ad48a333a72-le64.cache-3/usr/lib64/avogadro/1_1/extensions/povrayextension.so/usr/lib64/openbabel/2.3.2/mopacformat.so/usr/lib64/avogadro/1_1/extensions/forcefieldextension.so/usr/lib64/openbabel/2.3.2/plugin_descriptors.so/usr/lib64/libgnomeui-2.so.0.2400.5/usr/lib64/openbabel/2.3.2/boxformat.so/usr/lib64/libexpat.so.1.6.0/usr/lib64/openbabel/2.3.2/ghemicalformat.so/usr/lib64/openbabel/2.3.2/plugin_ops.so/tmp/glapf7WL (deleted)/usr/lib64/libatk-bridge-2.0.so.0.0.0/usr/lib64/openbabel/2.3.2/featformat.so/usr/lib64/libtiff.so.5.2.0/usr/lib64/openbabel/2.3.2/mmcifformat.so/usr/lib64/avogadro/1_1/extensions/animationextension.so/usr/lib64/openbabel/2.3.2/molproformat.so/usr/lib64/openbabel/2.3.2/chemdrawct.so/usr/lib64/avogadro/1_1/colors/customcolor.so/usr/lib64/openbabel/2.3.2/cifformat.so/usr/lib64/openbabel/2.3.2/mpqcformat.so/usr/lib64/openbabel/2.3.2/fpsformat.so/lib64/libsystemd-daemon.so.0.0.7/usr/lib64/openbabel/2.3.2/alchemyformat.so/usr/lib64/avogadro/1_1/engines/qtaimengine.so/usr/lib64/avogadro/1_1/extensions/selectextension.so/usr/lib64/avogadro/1_1/engines/sphereengine.so/usr/lib64/libgcrypt.so.11.7.0/usr/share/fonts/dejavu/DejaVuSansMono.ttf/usr/lib64/libGLEW.so.1.9.0/usr/lib64/avogadro/1_1/engines/ringengine.so/usr/lib64/avogadro/1_1/extensions/insertfragmentextension.so/var/cache/fontconfig/374b958dfa195bf54eaa9332f068d728-le64.cache-3/lib64/libudev.so.1.2.1/var/cache/fontconfig/f6b893a7224233d96cb72fd88691c0b4-le64.cache-3/usr/lib64/openbabel/2.3.2/zindoformat.so/usr/lib64/openbabel/2.3.2/xyzformat.so/usr/lib64/avogadro/1_1/extensions/inputfileextension.so/usr/lib64/avogadro/1_1/tools/bondcentrictool.so/var/cache/fontconfig/a595ca43be94766bbfe429f07fba82d0-le64.cache-3/usr/lib64/libgnome-2.so.0.3200.1/usr/lib64/openbabel/2.3.2/thermoformat.so/usr/lib64/openbabel/2.3.2/crkformat.so/usr/lib64/avogadro/1_1/tools/clickmeasuretool.so/usr/lib64/openbabel/2.3.2/jaguarformat.so/SYSV00000000 (deleted)/usr/lib64/openbabel/2.3.2/xedformat.so/usr/lib64/openbabel/2.3.2/gromos96format.so/usr/lib64/openbabel/2.3.2/png2format.so/usr/lib64/libXi.so.6.1.0/usr/lib64/libgailutil.so.18.0.1/usr/lib64/openbabel/2.3.2/vaspformat.so/usr/lib64/openbabel/2.3.2/povrayformat.so/usr/lib64/avogadro/1_1/tools/autoopttool.so/usr/lib64/avogadro/1_1/engines/cartoonengine.so/usr/lib64/avogadro/1_1/extensions/spectraextension.so/usr/lib64/libXinerama.so.1.0.0/tmp/gl2fXJ75 (deleted)/usr/lib64/libX11.so.6.3.0/usr/lib64/libinchi.so.1.04.00/usr/lib64/locale/locale-archive/usr/lib64/gio/modules/libgvfsdbus.so/usr/share/locale/en_GB/LC_MESSAGES/libc.mo/usr/lib64/openbabel/2.3.2/fchkformat.so/usr/lib64/openbabel/2.3.2/cacaoformat.so/var/cache/fontconfig/8d4af663993b81a124ee82e610bb31f9-le64.cache-3/usr/share/fonts/dejavu/DejaVuSans.ttf/usr/lib64/avogadro/1_1/engines/hbondengine.so/usr/lib64/openbabel/2.3.2/mmodformat.so/usr/lib64/openbabel/2.3.2/moldenformat.so/usr/lib64/openbabel/2.3.2/gaussformat.so/usr/lib64/libxcb-shm.so.0.0.0/usr/lib64/libicule.so.50.1.2/usr/lib64/libffi.so.6.0.1/usr/lib64/openbabel/2.3.2/pubchem.so/var/cache/fontconfig/acc285bc1956c3c4bc7afb41d537a85a-le64.cache-3/usr/lib64/libpopt.so.0.0.0/usr/bin/avogadro/usr/lib64/openbabel/2.3.2/molreport.so/usr/lib64/avogadro/1_1/engines/wireengine.so/var/cache/fontconfig/d722f191fc173fb8c13c8ea6f285de40-le64.cache-3/usr/lib64/avogadro/1_1/colors/residuecolor.so/usr/lib64/opengl/nvidia/lib/libGL.so.313.18/usr/lib64/openbabel/2.3.2/tinkerformat.so/usr/lib64/libatspi.so.0.0.1/usr/lib64/avogadro/1_1/extensions/invertchiralextension.so/usr/lib64/openbabel/2.3.2/turbomoleformat.so/usr/lib64/openbabel/2.3.2/chemtoolformat.so/usr/lib64/gconv/UTF-16.so/usr/lib64/libxcb.so.1.1.0/lib64/liblzma.so.5.0.4/usr/lib64/libgio-2.0.so.0.3400.3/usr/lib64/libdbus-1.so.3.7.2/usr/lib64/openbabel/2.3.2/posformat.so/usr/lib64/libpango-1.0.so.0.3200.5/lib64/libuuid.so.1.3.0/usr/lib64/openbabel/2.3.2/chem3dformat.so/usr/lib64/openbabel/2.3.2/rsmiformat.so/tmp/glFMSp2V (deleted)/usr/lib64/openbabel/2.3.2/opendxformat.so/local/home/justin/.local/share/mime/mime.cache/usr/lib64/gtk-2.0/2.10.0/engines/libmurrine.so/usr/lib64/libICE.so.6.3.0/usr/lib64/libgtk-x11-2.0.so.0.2400.16/usr/lib64/avogadro/1_1/colors/chargecolor.so/lib64/libresolv-2.16.so/usr/lib64/openbabel/2.3.2/plugin_forcefields.so/usr/lib64/openbabel/2.3.2/chemdrawcdx.so/usr/lib64/avogadro/1_1/extensions/fileimportextension.so/usr/lib64/openbabel/2.3.2/acrformat.so/var/cache/fontconfig/711dae798b6bff4224ea2776edcb5c93-le64.cache-3/usr/lib64/openbabel/2.3.2/pdbformat.so/usr/lib64/libvorbis.so.0.4.6/usr/lib64/libX11-xcb.so.1.0.0/usr/lib64/openbabel/2.3.2/bgfformat.so/usr/lib64/libXfixes.so.3.1.0/usr/lib64/gconv/gconv-modules.cache/usr/lib64/avogadro/1_1/extensions/surfaceextension.so/usr/lib64/libfreetype.so.6.10.0/lib64/librt-2.16.so/usr/lib64/libgdk_pixbuf-2.0.so.0.2600.5/usr/lib64/libXau.so.6.0.0/var/cache/fontconfig/76fa4b957c916922374347f144bde9da-le64.cache-3/var/cache/fontconfig/9ac117a19f6581c07dc6f3cd1c903930-le64.cache-3/usr/lib64/libgraphite2.so.3.0.1/usr/share/icons/Tango/icon-theme.cache/usr/lib64/openbabel/2.3.2/asciiformat.so/usr/lib64/gcc/x86_64-pc-linux-gnu/4.7.2/libstdc++.so.6.0.17/usr/lib64/libORBit-2.so.0.1.0/usr/lib64/libpixman-1.so.0.29.2/usr/lib64/openbabel/2.3.2/gulpformat.so/usr/lib64/libgnomecanvas-2.so.0.3000.3/usr/lib64/openbabel/2.3.2/mdlformat.so/usr/lib64/libart_lgpl_2.so.2.3.21/usr/lib64/openbabel/2.3.2/cccformat.so/usr/lib64/libSM.so.6.0.1/usr/lib64/openbabel/2.3.2/groformat.so/usr/lib64/qt4/plugins/imageformats/libqico.so/usr/lib64/libbonoboui-2.so.0.0.0/usr/lib64/avogadro/1_1/extensions/insertpeptideextension.so/usr/lib64/gcc/x86_64-pc-linux-gnu/4.7.2/libgomp.so.1.0.0/usr/lib64/openbabel/2.3.2/fingerprintformat.so/dev/nvidia0/usr/lib64/openbabel/2.3.2/fastsearchformat.so/usr/lib64/avogadro/1_1/extensions/supercellextension.so/usr/lib64/libglib-2.0.so.0.3400.3/usr/lib64/libopenbabel.so.4.0.2 >executable: /usr/bin/avogadro >kernel: 3.8.0-lh >pid: 25949 >pwd: /mnt/tmpfs >time: Fri 22 Feb 2013 15:34:33 CET >uid: 2069 >username: justin >var_log_messages: Feb 22 15:34:33 paul kernel: [28197.879423] avogadro[25949]: segfault at 40 ip 00002aaaac03f2c0 sp 00007fff9556fb18 error 4 in libopenbabel.so.4.0.2[2aaaabfc6000+244000] > >backtrace: >:[New LWP 25949] >:[New LWP 25960] >:[New LWP 25953] >:warning: Could not load shared library symbols for linux-vdso.so.1. >:Do you need "set solib-search-path" or "set sysroot"? >:[Thread debugging using libthread_db enabled] >:Using host libthread_db library "/lib64/libthread_db.so.1". >:Core was generated by `avogadro'. >:Program terminated with signal 11, Segmentation fault. >:#0 __normal_iterator (__i=@0x40: <error reading variable>, this=<optimized out>) at /usr/lib/gcc/x86_64-pc-linux-gnu/4.7.2/include/g++-v4/bits/stl_iterator.h:728 >:warning: Source file is more recent than executable. >:728 __normal_iterator(const _Iterator& __i) : _M_current(__i) { } >: >:Thread 3 (Thread 0x2aaab7f51700 (LWP 25953)): >:#0 0x00002aaaaadacbed in poll () at ../sysdeps/unix/syscall-template.S:81 >:No locals. >:#1 0x00002aaaad48a934 in g_main_context_poll (n_fds=1, fds=0x2aaab80013e0, timeout=-1, context=0x2aaab80009c0, priority=<optimized out>) at gmain.c:3584 >: poll_func = 0x2aaaad498c30 <g_poll> >:#2 g_main_context_iterate (context=context@entry=0x2aaab80009c0, block=block@entry=1, dispatch=dispatch@entry=1, self=<optimized out>) at gmain.c:3285 >: max_priority = 2147483647 >: timeout = -1 >: some_ready = <optimized out> >: nfds = 1 >: allocated_nfds = <optimized out> >: fds = 0x2aaab80013e0 >:#3 0x00002aaaad48aa4c in g_main_context_iteration (context=0x2aaab80009c0, may_block=1) at gmain.c:3351 >: retval = <optimized out> >:#4 0x00002aaaabe8c01e in QEventDispatcherGlib::processEvents (this=0x2aaab80008e0, flags=...) at kernel/qeventdispatcher_glib.cpp:426 >: d = 0x2aaab8000900 >: canWait = <optimized out> >: savedFlags = {i = 0} >: result = false >:#5 0x00002aaaabe5336f in QEventLoop::processEvents (this=this@entry=0x2aaab7f50cd0, flags=...) at kernel/qeventloop.cpp:149 >: d = 0x2aaab8002920 >:#6 0x00002aaaabe53658 in QEventLoop::exec (this=0x2aaab7f50cd0, flags=...) at kernel/qeventloop.cpp:204 >: d = 0x2aaab8002920 >: locker = {val = 29640248} >: app = 0x7fff9557a410 >:#7 0x00002aaaabd130b3 in QThread::exec (this=<optimized out>) at thread/qthread.cpp:542 >: d = 0x1c445b0 >: locker = {val = 29640248} >: eventLoop = {<QObject> = {_vptr.QObject = 0x2aaaabfc01d0 <vtable for QEventLoop+16>, static staticMetaObject = {d = {superdata = 0x0, stringdata = 0x2aaaabf608e0 <qt_meta_stringdata_QObject> "QObject", data = 0x2aaaabf60980 <qt_meta_data_QObject>, extradata = 0x2aaaabfbd6e0 <QObject::staticMetaObjectExtraData>}}, static staticMetaObjectExtraData = {objects = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, static_metacall = 0x2aaaabe72750 <QObject::qt_static_metacall(QObject*, QMetaObject::Call, int, void**)>}, d_ptr = {d = 0x2aaab8002920}, static staticQtMetaObject = {d = {superdata = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, stringdata = 0x2aaaabf68ec0 <qt_meta_stringdata_Qt> "Qt", data = 0x2aaaabf6c7e0 <qt_meta_data_Qt>, extradata = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:}}}, static staticMetaObject = {d = {superdata = 0x4ae6e0 <QObject::staticMetaObject>, stringdata = 0x2aaaabf72ac0 <qt_meta_stringdata_QEventLoop> "QEventLoop", data = 0x2aaaabf72ae0 <qt_meta_data_QEventLoop>, extradata = 0x2aaaabfc0260 <QEventLoop::staticMetaObjectExtraData>}}, static staticMetaObjectExtraData = {objects = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, static_metacall = 0x2aaaabec51b0 <QEventLoop::qt_static_metacall(QObject*, QMetaObject::Call, int, void**)>}} >: returnCode = <optimized out> >:#8 0x00002aaaabd16ce4 in QThreadPrivate::start (arg=0x1c44590) at thread/qthread_unix.cpp:338 >: __clframe = {__cancel_routine = 0x2aaaabd159b0 <QThreadPrivate::finish(void*)>, __cancel_arg = 0x1c44590, __do_it = 1, __cancel_type = <optimized out>} >: thr = 0x1c44590 >: data = 0x1c44720 >: objectName = {static null = {<No data fields>}, static shared_null = {ref = {_q_value = 1}, alloc = 0, size = 0, data = 0x4ae3ba <QString::shared_null+26>, clean = 0, simpletext = 0, righttoleft = 0, asciiCache = 0, capacity = 0, reserved = 0, array = {0}}, static shared_empty = {ref = {_q_value = 5429}, alloc = 0, size = 0, data = 0x2aaaabfb9efa <QString::shared_empty+26>, clean = 0, simpletext = 0, righttoleft = 0, asciiCache = 0, capacity = 0, reserved = 0, array = {0}}, d = 0x4ae3a0 <QString::shared_null>, static codecForCStrings = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:} >:#9 0x00002aaaad1ce124 in ?? () from /usr/lib64/libGL.so.1 >:No symbol table info available. >:#10 0x00002aaaad76dfdb in start_thread (arg=0x2aaab7f51700) at pthread_create.c:308 >: __res = <optimized out> >: pd = 0x2aaab7f51700 >: now = <optimized out> >: unwind_buf = {cancel_jmp_buf = {{jmp_buf = {46912719099648, -8504917518473036509, 0, 140735698933056, 29640080, 46912719099648, -2545350202900153053, -2545329293438943965}, mask_was_saved = 0}}, priv = {pad = {0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:}, data = {prev = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, cleanup = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, canceltype = 0}}} >: not_first_call = 0 >: robust = <optimized out> >: pagesize_m1 = <optimized out> >: sp = <optimized out> >: freesize = <optimized out> >: __PRETTY_FUNCTION__ = "start_thread" >:#11 0x00002aaaaadb5a5d in clone () at ../sysdeps/unix/sysv/linux/x86_64/clone.S:114 >:No locals. >: >:Thread 2 (Thread 0x2aaabd3d2700 (LWP 25960)): >:#0 0x00002aaaaadacbed in poll () at ../sysdeps/unix/syscall-template.S:81 >:No locals. >:#1 0x00002aaaad48a934 in g_main_context_poll (n_fds=3, fds=0x2aaac00010e0, timeout=-1, context=0x21390b0, priority=<optimized out>) at gmain.c:3584 >: poll_func = 0x2aaaad498c30 <g_poll> >:#2 g_main_context_iterate (context=0x21390b0, block=block@entry=1, dispatch=dispatch@entry=1, self=<optimized out>) at gmain.c:3285 >: max_priority = 2147483647 >: timeout = -1 >: some_ready = <optimized out> >: nfds = 3 >: allocated_nfds = <optimized out> >: fds = 0x2aaac00010e0 >:#3 0x00002aaaad48ad92 in g_main_loop_run (loop=0x2139040) at gmain.c:3484 >: __PRETTY_FUNCTION__ = "g_main_loop_run" >:#4 0x00002aaab2b1ef06 in gdbus_shared_thread_func (user_data=0x2139080) at gdbusprivate.c:277 >: data = 0x2139080 >:#5 0x00002aaaad4aeaf5 in g_thread_proxy (data=0x25c2a80) at gthread.c:797 >: thread = 0x25c2a80 >:#6 0x00002aaaad1ce124 in ?? () from /usr/lib64/libGL.so.1 >:No symbol table info available. >:#7 0x00002aaaad76dfdb in start_thread (arg=0x2aaabd3d2700) at pthread_create.c:308 >: __res = <optimized out> >: pd = 0x2aaabd3d2700 >: now = <optimized out> >: unwind_buf = {cancel_jmp_buf = {{jmp_buf = {46912807708416, -8504917518473036509, 0, 140735698924848, 39594624, 46912807708416, -2545364016051847901, -2545329293438943965}, mask_was_saved = 0}}, priv = {pad = {0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:}, data = {prev = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, cleanup = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, canceltype = 0}}} >: not_first_call = 0 >: robust = <optimized out> >: pagesize_m1 = <optimized out> >: sp = <optimized out> >: freesize = <optimized out> >: __PRETTY_FUNCTION__ = "start_thread" >:#8 0x00002aaaaadb5a5d in clone () at ../sysdeps/unix/sysv/linux/x86_64/clone.S:114 >:No locals. >: >:Thread 1 (Thread 0x2aaab08c9140 (LWP 25949)): >:#0 __normal_iterator (__i=@0x40: <error reading variable>, this=<optimized out>) at /usr/lib/gcc/x86_64-pc-linux-gnu/4.7.2/include/g++-v4/bits/stl_iterator.h:728 >:No locals. >:#1 begin (this=warning: (Internal error: pc 0x40 in read in psymtab, but not in symtab.) >: >:0x40) at /usr/lib/gcc/x86_64-pc-linux-gnu/4.7.2/include/g++-v4/bits/stl_vector.h:519 >:No locals. >:#2 OpenBabel::OBAtom::BeginBond (this=this@entry=warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:0x0, i=<error reading variable: Cannot access memory at address 0x0>) at /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/src/atom.cpp:1056 >:No locals. >:#3 0x00002aaaac03f599 in OpenBabel::OBAtom::GetHvyValence (this=warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:0x0) at /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/src/atom.cpp:535 >: count = 0 >: bond = <optimized out> >: i = <error reading variable i (Cannot access memory at address 0x0)> >:#4 0x00002aaaac19cc6c in OpenBabel::TetrahedralFrom3D (mol=mol@entry=0x7fff95578b10, stereoUnits=std::vector of length 369, capacity 512 = {...}, addToMol=addToMol@entry=true) at /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/src/stereo/perception.cpp:2107 >: config = {center = 1, {from = 46912497724712, towards = 46912497724712}, refs = std::vector of length -195446, capacity -5864062215482 = {46912518250496, 46912497723824, 46912520626176, 46912497725104, 46912497722616, 46912497723856, 0, 46912497724992, 0, 46912520626496, 46912520626192, 46912520626176, 0, 46912520626336, 46912520626304, 46912520626240, 46912520626256, 46912520626272, 46912520626352, 46912520626320, 46912520626528, 46912520626544, 46912520626512, 0, 0, 0, 0, 0, 46912520626224, 0, 0, 46912520626208, 0, 46912520626592, 46912520626560, 46912520626608, 46912520626576, 46912520626640, 0, 0, 0, 0, 46912520626720, 46912520626704, 46912520626688, 46912520626672, 0, 0, 46912520626288, 0, 0, 0, 0, 0, 0, 0, 0, 46912520626656, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 46912520626368, 46912518250560, 46912518250496, 2686982, 0, 0, 46912497724984, 0, 46912498360688, 46912594798128, 8817567858709, 64424509951, 46912518548480, 46912518552576, 46912518559664, 70493298229248, 0, 0, 0, 46912518574352, 46912497725040, 46912518250496, 46912520673552, 46912520626176, 46912498361384, 0, 0, 0, 4, 46912497724712, 46912497724552, 0, 2050, 1336272, 46912498347808, 1, 46912498349112, 0, 4294967296, 0, 18446744069414584320, 0, 0, 0, 46912518338976, 0, 46912497723856, 46912518338976, 0, 0, 0, 0, 0, 0, 0, 0, 0, 7, 0, 46912497725016, 0, 1, 7092717996734572908, 3346019691383841377, 52, 7091318039310988591, 8101802459585852470, 3345160096444477029, 875458419, 7091318039310988591, 8530207374142551094, 8299693700391462767, 3223151, 46912520675328, 46912497725072, 46912521748864, 46912497726344, 46912497723856, 46912497725104, 0, 46912497726240, 0, 46912521749232, 46912521748880, 46912521748864, 0, 46912521749024, 46912521748992, 46912521748928, 46912521748944, 46912521748960, 46912521749040, 46912521749008, 46912521749264, 46912521749280, 46912521749248, 0, 0, 0, 0, 0, 46912521748912, 0, 0, 46912521748896, 0, 46912521749328, 46912521749296, 46912521749344, 46912521749312, 0, 0, 0, 0, 0, 46912521749424, 46912521749408...}, winding = 0, view = (unknown: 0), specified = 5} >: from = <optimized out> >: th = 0x2aaaabfd9288 >: center = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >: >: use_central_atom = <optimized out> >: nbrCoords = std::vector of length 5863984147214, capacity 5863984147212 = {{_vx = 1.3438585566881906e-321, _vy = 5.5335352334219613e-322, _vz = 3.6560857792252244e-322}, {_vx = 3.6560857792252244e-322, _vy = 0, _vz = 4765024.5019607842}, {_vx = 4790553.1447831029, _vy = 6.0137328173435902e-154, _vz = 6.0134700169990685e-154}, {_vx = 6.0134700169990685e-154, _vy = 6.0134700169990685e-154, _vz = 6.0134700169990685e-154}, {_vx = 6.0134700169990685e-154, _vy = 6.0134700169990685e-154, _vz = 8.2931092543294934e-317}, {_vx = 1.2020617163317528e-320, _vy = 2.3177855677887137e-310, _vz = 2.3177855677887137e-310}, {_vx = 3.9209666247887336e-316, _vy = 3.9209666247887336e-316, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 9.3018638737259435e-315}, {_vx = 8.0942774758171421e-320, _vy = 3.4831628031807881e-321, _vz = 4.7718338319759948e-316}, {_vx = 2.3177855677555125e-310, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 5.0997060711216795e-318}, {_vx = -2, _vy = 6.9564442934447513e-321, _vz = 3.4782221467223757e-321}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 2.3176660797035525e-310, _vz = 1.0434666440167127e-320}, {_vx = 5.5335352334219613e-322, _vy = 3.9334771574464673e-316, _vz = 2.3176438028935056e-310}, {_vx = 3.920158728644654e-316, _vy = 3.9201601120284623e-316, _vz = 3.9201601120284623e-316}, {_vx = 2.4209216646221081e-322, _vy = 3.921077295493402e-316, _vz = 3.9210869791800605e-316}, {_vx = 3.9210869791800605e-316, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 1.0325971998082053e-321}, {_vx = 3.9191879884637051e-316, _vy = 2.3177855677310068e-310, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = -2.3882118405196465e+77}, {_vx = 1.2015676506859116e-320, _vy = 5.5335352334219613e-322, _vz = 6.9532673984991022e-310}, {_vx = 2.3177855677349594e-310, _vy = 1.2365862331581058e-316, _vz = 1.2365872212893975e-316}, {_vx = 1.2365872212893975e-316, _vy = 9.7330932230725569e-322, _vz = 3.9504461384922724e-316}, {_vx = 3.9504850708651647e-316, _vy = 3.9504850708651647e-316, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 5.5829417980060859e-322, _vy = 6.9532673984991022e-310, _vz = 2.3177855677294258e-310}, {_vx = 1.1048248541999954e-316, _vy = 1.1048258423312871e-316, _vz = 1.1048258423312871e-316}, {_vx = 9.7330932230725569e-322, _vy = 3.9504856637439397e-316, _vz = 3.950524596116832e-316}, {_vx = 3.950524596116832e-316, _vy = 2.317785567714011e-310, _vz = 2.6086666100417818e-321}, {_vx = 4.001931731314097e-322, _vy = 4.7717097226857595e-316, _vz = 1.6304166312761136e-322}, {_vx = 2.3176438029610938e-310, _vy = 3.9193215838143405e-316, _vz = 4.7717113036958262e-316}, {_vx = 1.6304166312761136e-322, _vy = 2.317643802961242e-310, _vz = 2.3177855677215208e-310}, {_vx = 1.5810100666919889e-322, _vy = 5.5829417980060859e-322, _vz = 3.6560857792252244e-322}, {_vx = 3.6560857792252244e-322, _vy = 0, _vz = 2383016.2509803921}, {_vx = 7.7136596228251923e-86, _vy = 7.537946636197403e-153, _vz = 6.0134700169990685e-154}, {_vx = 6.0134700169990685e-154, _vy = 6.0134700169990685e-154, _vz = 6.0134700169990685e-154}, {_vx = 6.0134700169990685e-154, _vy = 6.0134700169990685e-154, _vz = 8.2931092543294934e-317}, {_vx = 5.5829417980060859e-322, _vy = 6.9532673984991022e-310, _vz = 2.3177855677404929e-310}, {_vx = 1.2029589395446005e-316, _vy = 1.2029599276758922e-316, _vz = 1.2029599276758922e-316}, {_vx = 9.7330932230725569e-322, _vy = 4.7679326896364323e-316, _vz = 4.7679716220093246e-316}, {_vx = 4.7679716220093246e-316, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 5.5829417980060859e-322}, {_vx = 6.9532673984991022e-310, _vy = 2.3177855677349594e-310, _vz = 3.8961226326007356e-316}, {_vx = 3.8961236207320273e-316, _vy = 3.8961236207320273e-316, _vz = 9.7330932230725569e-322}, {_vx = 4.7680299217555339e-316, _vy = 4.7680688541284262e-316, _vz = 4.7680688541284262e-316}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 5.5829417980060859e-322, _vz = 6.9532673984991022e-310}, {_vx = 2.3177855677294258e-310, _vy = 1.0518262347443466e-316, _vz = 1.0518274205018966e-316}, {_vx = 1.0518274205018966e-316, _vy = 9.7330932230725569e-322, _vz = 4.768157983570936e-316}, {_vx = 4.7681969159438282e-316, _vy = 4.768225571751287e-316, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 6.9613849499031638e-321, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 8.9002954340288055e-308, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 3.1620201333839779e-322, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 1.0192936325010189e-314, _vy = 6.9564442934447513e-321, _vz = 8.7449619313900638e-322}, {_vx = 2.3177855677294258e-310, _vy = 2.4409087938852282e-316, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}, {_vx = 0, _vy = 0, _vz = 0}...} >: bond = <optimized out> >: sign = <optimized out> >: configs = std::vector of length 0, capacity 0 >: __FUNCTION__ = "TetrahedralFrom3D" >: centers = std::vector of length 366, capacity 512 = {18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615, 18446744073709551615...} >: i = 18446744073709551615 >:#5 0x00002aaaac1a16df in OpenBabel::StereoFrom3D (mol=0x7fff95578b10, force=<optimized out>) at /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/src/stereo/perception.cpp:2073 >: __FUNCTION__ = "StereoFrom3D" >: symmetry_classes = std::vector of length 6301, capacity 6301 = {2787, 2532, 3927, 1777, 3390, 612, 612, 446, 396, 396, 396, 3775, 2840, 3731, 1594, 3458, 2781, 2685, 1324, 1325, 1907, 156, 313, 313, 162, 162, 3564, 3350, 3698, 1502, 2345, 2456, 2405, 3057, 460, 1744, 196, 628, 628, 525, 525, 445, 445, 459, 459, 3493, 2397, 3497, 1717, 2308, 2221, 4119, 4119, 1720, 94, 430, 430, 1219, 271, 271, 271, 271, 271, 271, 3699, 2339, 3726, 1471, 2802, 3402, 3093, 3093, 3401, 3401, 3041, 1505, 642, 486, 486, 1404, 1404, 1019, 1019, 1388, 3463, 2821, 3270, 1727, 2955, 651, 2325, 1733, 295, 650, 418, 418, 418, 3729, 2573, 3038, 937, 2492, 2562, 2466, 171, 777, 777, 309, 309, 1222, 1222, 2986, 2307, 3821, 2045, 2197, 3152, 2632, 2632, 1016, 898, 1103, 1103, 466, 427, 427, 427, 427, 427, 427, 4122, 2242, 4124, 1840, 3616, 2662, 2590, 2589, 405, 1820, 1495, 1024, 1024, 384, 384, 522, 522, 404, 404, 3840, 2441, 3003, 1633, 2733, 2255, 2255, 2047, 143, 742, 88, 88, 88, 88, 88, 88, 4035, 2570, 4034, 970, 971, 1978, 1978, 3002, 3540, 2979, 1660, 2760, 1625, 197, 205, 205, 205, 3640, 2664, 3888, 1239, 2390, 3752, 3752, 943, 509, 361, 674, 674, 674, 674, 674, 674, 3241, 3909...} >: stereogenicUnits = std::vector of length 369, capacity 512 = {{type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}, {type = OpenBabel::OBStereo::Tetrahedral, id = 18446744073709551615, para = false}...} >:#6 0x00002aaaac1a2889 in OpenBabel::PerceiveStereo (mol=<optimized out>, force=<optimized out>) at /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/src/stereo/perception.cpp:73 >: __FUNCTION__ = "PerceiveStereo" >:#7 0x00002aaab7d0357e in OpenBabel::MDLFormat::WriteMolecule (this=0x2aaab7d13a80 <OpenBabel::theMOLFormat>, pOb=<optimized out>, pConv=0x7fff95578c20) at /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/src/formats/mdlformat.cpp:743 >: pmol = 0x7fff95578b10 >: __FUNCTION__ = "WriteMolecule" >: ofs = @0x7fff95578590: {<std::basic_ios<char, std::char_traits<char> >> = {<std::ios_base> = {_vptr.ios_base = 0x2aaaac757268 <vtable for std::basic_stringstream<char, std::char_traits<char>, std::allocator<char> >+104>, static boolalpha = std::_S_boolalpha, static dec = std::_S_dec, static fixed = std::_S_fixed, static hex = std::_S_hex, static internal = std::_S_internal, static left = std::_S_left, static oct = std::_S_oct, static right = std::_S_right, static scientific = std::_S_scientific, static showbase = std::_S_showbase, static showpoint = std::_S_showpoint, static showpos = std::_S_showpos, static skipws = std::_S_skipws, static unitbuf = std::_S_unitbuf, static uppercase = std::_S_uppercase, static adjustfield = std::_S_adjustfield, static basefield = std::_S_basefield, static floatfield = std::_S_floatfield, static badbit = std::_S_badbit, static eofbit = std::_S_eofbit, static failbit = std::_S_failbit, static goodbit = std::_S_goodbit, static app = std::_S_app, static ate = std::_S_ate, static binary = std::_S_bin, static in = std::_S_in, static out = std::_S_out, static trunc = std::_S_trunc, static beg = std::_S_beg, static cur = std::_S_cur, static end = std::_S_end, _M_precision = 6, _M_width = 0, _M_flags = 4098, _M_exception = std::_S_goodbit, _M_streambuf_state = std::_S_goodbit, _M_callbacks = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_word_zero = {_M_pword = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_iword = 0}, _M_local_word = {{_M_pword = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_iword = 0}, {_M_pword = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_iword = 0}, {_M_pword = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_iword = 0}, {_M_pword = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_iword = 0}, {_M_pword = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_iword = 0}, {_M_pword = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_iword = 0}, {_M_pword = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_iword = 0}, {_M_pword = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_iword = 0}}, _M_word_size = 145, _M_word = 0x900000001, _M_ios_locale = {static none = 0, static ctype = 1, static numeric = 2, static collate = 4, static time = 8, static monetary = 16, static messages = 32, static all = 63, _M_impl = 0x7fff95578590, static _S_classic = 0x2aaaac76eae0 <(anonymous namespace)::c_locale_impl>, static _S_global = 0x2aaaac76eae0 <(anonymous namespace)::c_locale_impl>, static _S_categories = 0x2aaaac7536c0 <__gnu_cxx::category_names>, static _S_once = 2}}, _M_tie = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_fill = 0 '\000', _M_fill_init = false, _M_streambuf = 0x100000000, _M_ctype = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_num_put = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_num_get = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:}, _vptr.basic_ostream = 0x2aaaac757240 <vtable for std::basic_stringstream<char, std::char_traits<char>, std::allocator<char> >+64>} >: mol = @0x7fff95578b10: {<OpenBabel::OBBase> = {_vptr.OBBase = 0x2aaaac212350 <vtable for OpenBabel::OBMol+16>, _vdata = std::vector of length 34, capacity 64 = {0x1a3b0c0, 0x5c00860, 0x5c00580, 0x2c54230, 0x2c2b2f0, 0x5c1b520, 0x5c00940, 0x12e8320, 0x1a4a350, 0x1470480, 0x5c1a460, 0x4b31b50, 0x4b318f0, 0x4b31230, 0x4b313d0, 0x12e4300, 0x1597170, 0x12e3e80, 0x18d2330, 0x4b3c680, 0x1302200, 0x166b750, 0x171b350, 0x131b8f0, 0x4b3cbe0, 0x1650fa0, 0x16501f0, 0x164cb00, 0x1a4c760, 0x5c1a160, 0x163ff30, 0x4ba6780, 0x158f9b0, 0x17124e0}}, _flags = 1052430, _autoPartialCharge = true, _autoFormalCharge = true, _title = "", _vatom = std::vector of length 6337, capacity 6338 = {0x12d1350, 0x15c06a0, 0x16c24a0, 0x1312fb0, 0x190b190, 0x16a60b0, 0x18f6450, 0x16b6710, 0x165fef0, 0x194c5f0, 0x1fef700, 0x12dc640, 0x16b9940, 0x19141c0, 0x4b84080, 0x3fa7b00, 0x4b722a0, 0x4b9d7d0, 0x12df150, 0x446fb60, 0x12ea700, 0x12d7150, 0x16c8f30, 0x13297a0, 0x12df380, 0x18e68c0, 0x167a5f0, 0x19b2470, 0x152cd70, 0x1838320, 0x17307a0, 0x1665d30, 0x15816d0, 0x16962e0, 0x1318b30, 0x12d3a30, 0x1668610, 0x1fee370, 0x1695bd0, 0x166b340, 0x194ead0, 0x44719b0, 0x190cb40, 0x1ab0380, 0x16a6520, 0x1904fc0, 0x1910bb0, 0x131a350, 0x190c820, 0x12f05a0, 0x194c6e0, 0x1578c50, 0x16d04f0, 0x190e9d0, 0x1ab6360, 0x1903680, 0x17bd930, 0x6032a40, 0x15de6c0, 0x1ff53c0, 0x5f68790, 0x4b6de50, 0x18f5630, 0x193c140, 0x12cd7f0, 0x15ce420, 0x1ab5c30, 0x1675f70, 0x15b27c0, 0x166e070, 0x12f0dd0, 0x3b90c50, 0x4b8bcf0, 0x4b79280, 0x4b91d90, 0x4b93340, 0x5fcc900, 0x4b78af0, 0x4470990, 0x1aa4e90, 0x1955f90, 0x1aa2bc0, 0x3f98a60, 0x1935c40, 0x193e340, 0x12faa10, 0x1938130, 0x1934300, 0x15c0e50, 0x165b090, 0x18ec100, 0x15b7340, 0x3f98330, 0x1aa7220, 0x15a8930, 0x1973360, 0x18a7830, 0x16c36a0, 0x15ab750, 0x1aa2fb0, 0x16a37f0, 0x1945930, 0x19384f0, 0x1943650, 0x1945480, 0x127e0b0, 0x16cf3b0, 0x165ae50, 0x4b96ae0, 0x19360f0, 0x1955c10, 0x15b28c0, 0x4b93430, 0x5f7d160, 0x12f3c90, 0x193e000, 0x193bf00, 0x4471700, 0x1ff5180, 0x5fc96e0, 0x16ad130, 0x16aa1e0, 0x1ff5c40, 0x1689e80, 0x1ff5060, 0x1308df0, 0x13041c0, 0x166f9a0, 0x1ff4d00, 0x1ff4e20, 0x15f3d50, 0x4b6c2e0, 0x15cca20, 0x12e11b0, 0x193a4a0, 0x15e2420, 0x1ff4ab0, 0x1ff5d60, 0x1940600, 0x16a2a20, 0x15877a0, 0x1ff4f40, 0x165a7f0, 0x159e450, 0x1593360, 0x15f3730, 0x16a0680, 0x1ff4990, 0x193a030, 0x167be80, 0x1ff5690, 0x193ffb0, 0x1ff52a0, 0x1ff5570, 0x157bef0, 0x12e1a50, 0x1ff4be0, 0x1ff5e80, 0x1943190, 0x1aa4a90, 0x15dc9d0, 0x1940140, 0x4b95400, 0x5fcd130, 0x14784a0, 0x131cc40, 0x16c59e0, 0x168cb30, 0x12f6c50, 0x1677d30, 0x15e0b50, 0x16a12f0, 0x16cb3c0, 0x16bd780, 0x15ccb80, 0x157b140, 0x4b7f210, 0x15ec3c0, 0x132e6a0, 0x15cb550, 0x1585190, 0x12f8900, 0x16ca7a0, 0x12fc230, 0x159bf00, 0x15f00d0, 0x15b6e40, 0x132ade0, 0x15f5a00, 0x157e5c0, 0x15e0090, 0x15cb6d0, 0x1674e00, 0x15a0d10, 0x16a1b20, 0x12e6ce0, 0x16a7dc0, 0x1679250, 0x4b6c050, 0x254de00...}, _atomIds = std::vector of length 6301, capacity 8192 = {0x12d1350, 0x15c06a0, 0x16c24a0, 0x1312fb0, 0x190b190, 0x16a60b0, 0x18f6450, 0x16b6710, 0x165fef0, 0x194c5f0, 0x1fef700, 0x12dc640, 0x16b9940, 0x19141c0, 0x4b84080, 0x3fa7b00, 0x4b722a0, 0x4b9d7d0, 0x12df150, 0x446fb60, 0x12ea700, 0x12d7150, 0x16c8f30, 0x13297a0, 0x12df380, 0x18e68c0, 0x167a5f0, 0x19b2470, 0x152cd70, 0x1838320, 0x17307a0, 0x1665d30, 0x15816d0, 0x16962e0, 0x1318b30, 0x12d3a30, 0x1668610, 0x1fee370, 0x1695bd0, 0x166b340, 0x194ead0, 0x44719b0, 0x190cb40, 0x1ab0380, 0x16a6520, 0x1904fc0, 0x1910bb0, 0x131a350, 0x190c820, 0x12f05a0, 0x194c6e0, 0x1578c50, 0x16d04f0, 0x190e9d0, 0x1ab6360, 0x1903680, 0x17bd930, 0x6032a40, 0x15de6c0, 0x1ff53c0, 0x5f68790, 0x4b6de50, 0x18f5630, 0x193c140, 0x12cd7f0, 0x15ce420, 0x1ab5c30, 0x1675f70, 0x15b27c0, 0x166e070, 0x12f0dd0, 0x3b90c50, 0x4b8bcf0, 0x4b79280, 0x4b91d90, 0x4b93340, 0x5fcc900, 0x4b78af0, 0x4470990, 0x1aa4e90, 0x1955f90, 0x1aa2bc0, 0x3f98a60, 0x1935c40, 0x193e340, 0x12faa10, 0x1938130, 0x1934300, 0x15c0e50, 0x165b090, 0x18ec100, 0x15b7340, 0x3f98330, 0x1aa7220, 0x15a8930, 0x1973360, 0x18a7830, 0x16c36a0, 0x15ab750, 0x1aa2fb0, 0x16a37f0, 0x1945930, 0x19384f0, 0x1943650, 0x1945480, 0x127e0b0, 0x16cf3b0, 0x165ae50, 0x4b96ae0, 0x19360f0, 0x1955c10, 0x15b28c0, 0x4b93430, 0x5f7d160, 0x12f3c90, 0x193e000, 0x193bf00, 0x4471700, 0x1ff5180, 0x5fc96e0, 0x16ad130, 0x16aa1e0, 0x1ff5c40, 0x1689e80, 0x1ff5060, 0x1308df0, 0x13041c0, 0x166f9a0, 0x1ff4d00, 0x1ff4e20, 0x15f3d50, 0x4b6c2e0, 0x15cca20, 0x12e11b0, 0x193a4a0, 0x15e2420, 0x1ff4ab0, 0x1ff5d60, 0x1940600, 0x16a2a20, 0x15877a0, 0x1ff4f40, 0x165a7f0, 0x159e450, 0x1593360, 0x15f3730, 0x16a0680, 0x1ff4990, 0x193a030, 0x167be80, 0x1ff5690, 0x193ffb0, 0x1ff52a0, 0x1ff5570, 0x157bef0, 0x12e1a50, 0x1ff4be0, 0x1ff5e80, 0x1943190, 0x1aa4a90, 0x15dc9d0, 0x1940140, 0x4b95400, 0x5fcd130, 0x14784a0, 0x131cc40, 0x16c59e0, 0x168cb30, 0x12f6c50, 0x1677d30, 0x15e0b50, 0x16a12f0, 0x16cb3c0, 0x16bd780, 0x15ccb80, 0x157b140, 0x4b7f210, 0x15ec3c0, 0x132e6a0, 0x15cb550, 0x1585190, 0x12f8900, 0x16ca7a0, 0x12fc230, 0x159bf00, 0x15f00d0, 0x15b6e40, 0x132ade0, 0x15f5a00, 0x157e5c0, 0x15e0090, 0x15cb6d0, 0x1674e00, 0x15a0d10, 0x16a1b20, 0x12e6ce0, 0x16a7dc0, 0x1679250, 0x4b6c050, 0x254de00...}, _vbond = std::vector of length 5446, capacity 6338 = {0x4b84250, 0x4b70230, 0x4b6ddc0, 0x446fe10, 0x4b6d770, 0x19559c0, 0x12f5490, 0x15b03d0, 0x1ab2070, 0x167fe30, 0x16a34a0, 0x175be70, 0x16e4460, 0x16e6700, 0x16e8aa0, 0x16ec710, 0x15359f0, 0x1a3f0c0, 0x167d740, 0x1a6d430, 0x1694580, 0x1582940, 0x16ccc80, 0x1766730, 0x12db8c0, 0x15a5e40, 0x15e2d80, 0x1577af0, 0x12fbc70, 0x131c1b0, 0x12e4af0, 0x1a4ac70, 0x159d170, 0x1a7a8d0, 0x1a7add0, 0x171e980, 0x15fa7d0, 0x16480b0, 0x1648ad0, 0x1652c70, 0x144c3f0, 0x144c8d0, 0x1456090, 0x1456570, 0x1768e90, 0x1466de0, 0x1477a20, 0x1505f60, 0x173d6c0, 0x1512440, 0x173e0d0, 0x153b230, 0x153b730, 0x153fbf0, 0x15400d0, 0x1545f00, 0x1550e70, 0x1551350, 0x155c2e0, 0x1880fc0, 0x18814a0, 0x1881e70, 0x1597430, 0x189e320, 0x18b3d30, 0x18b9b60, 0x18ba5a0, 0x18c0510, 0x18c09f0, 0x18e78a0, 0x16dde30, 0x16df8b0, 0x16e75f0, 0x16f3ef0, 0x16f43d0, 0x1702030, 0x1701b50, 0x17069d0, 0x1566dc0, 0x1568690, 0x177c8e0, 0x177de70, 0x179f590, 0x17a0080, 0x17fc0e0, 0x17fc690, 0x16697e0, 0x1826250, 0x1843920, 0x184b4b0, 0x1863340, 0x1865900, 0x199def0, 0x199ea00, 0x19d93e0, 0x19dba40, 0x19fee00, 0x1a05f70, 0x1a0dae0, 0x17907f0, 0x174afd0, 0x1760060, 0x173e8f0, 0x1747030, 0x18cfc70, 0x1786750, 0x179b380, 0x17cb3c0, 0x17dbe30, 0x17f8580, 0x181ed00, 0x1875250, 0x1878310, 0x19ae3f0, 0x19bcd00, 0x19f1700, 0x19f5cb0, 0x196e670, 0x1a7faa0, 0x1a854d0, 0x1a624d0, 0x18998a0, 0x1518220, 0x151a9c0, 0x151c4a0, 0x170fc40, 0x1a3f300, 0x1a40210, 0x1a4aeb0, 0x167db30, 0x1507fc0, 0x150dac0, 0x15279a0, 0x152e170, 0x1554d40, 0x155ec80, 0x187fe50, 0x1964490, 0x15cc7c0, 0x1561e40, 0x19fc3a0, 0x5ed5c70, 0x153a0e0, 0x176b1e0, 0x1718b20, 0x1a42b10, 0x19c0c10, 0x19cbcb0, 0x1a29f10, 0x178d800, 0x17ea510, 0x17e2200, 0x1a6b410, 0x1754a70, 0x17b9a00, 0x1ff4520, 0x177c640, 0x17aa3f0, 0x17aa990, 0x17abfc0, 0x17aeb80, 0x17b7eb0, 0x17baa90, 0x17cc150, 0x17d34d0, 0x17e6610, 0x1808740, 0x180ad50, 0x18103d0, 0x1811ae0, 0x18131f0, 0x181bf00, 0x1825fb0, 0x1827640, 0x1829270, 0x1829da0, 0x182aea0, 0x182ba60, 0x1834240, 0x163ea10, 0x17613d0, 0x1967ea0, 0x1763490, 0x1751500, 0x1716a80, 0x1ff0260, 0x1777f50, 0x1787fe0, 0x1788550, 0x178a580, 0x17a67a0, 0x17a6d10, 0x17b48b0, 0x17c1d60, 0x17d9b60, 0x17f0060, 0x17f7850, 0x180cdf0, 0x18362c0, 0x183ff50...}, _bondIds = std::vector of length 5428, capacity 8192 = {0x4b84250, 0x4b70230, 0x4b6ddc0, 0x446fe10, 0x4b6d770, 0x19559c0, 0x12f5490, 0x15b03d0, 0x1ab2070, 0x167fe30, 0x16a34a0, 0x175be70, 0x16e4460, 0x16e6700, 0x16e8aa0, 0x16ec710, 0x15359f0, 0x1a3f0c0, 0x167d740, 0x1a6d430, 0x1694580, 0x1582940, 0x16ccc80, 0x1766730, 0x12db8c0, 0x15a5e40, 0x15e2d80, 0x1577af0, 0x12fbc70, 0x131c1b0, 0x12e4af0, 0x1a4ac70, 0x159d170, 0x1a7a8d0, 0x1a7add0, 0x171e980, 0x15fa7d0, 0x16480b0, 0x1648ad0, 0x1652c70, 0x144c3f0, 0x144c8d0, 0x1456090, 0x1456570, 0x1768e90, 0x1466de0, 0x1477a20, 0x1505f60, 0x173d6c0, 0x1512440, 0x173e0d0, 0x153b230, 0x153b730, 0x153fbf0, 0x15400d0, 0x1545f00, 0x1550e70, 0x1551350, 0x155c2e0, 0x1880fc0, 0x18814a0, 0x1881e70, 0x1597430, 0x189e320, 0x18b3d30, 0x18b9b60, 0x18ba5a0, 0x18c0510, 0x18c09f0, 0x18e78a0, 0x16dde30, 0x16df8b0, 0x16e75f0, 0x16f3ef0, 0x16f43d0, 0x1702030, 0x1701b50, 0x17069d0, 0x1566dc0, 0x1568690, 0x177c8e0, 0x177de70, 0x179f590, 0x17a0080, 0x17fc0e0, 0x17fc690, 0x16697e0, 0x1826250, 0x1843920, 0x184b4b0, 0x1863340, 0x1865900, 0x199def0, 0x199ea00, 0x19d93e0, 0x19dba40, 0x19fee00, 0x1a05f70, 0x1a0dae0, 0x17907f0, 0x174afd0, 0x1760060, 0x173e8f0, 0x1747030, 0x18cfc70, 0x1786750, 0x179b380, 0x17cb3c0, 0x17dbe30, 0x17f8580, 0x181ed00, 0x1875250, 0x1878310, 0x19ae3f0, 0x19bcd00, 0x19f1700, 0x19f5cb0, 0x196e670, 0x1a7faa0, 0x1a854d0, 0x1a624d0, 0x18998a0, 0x1518220, 0x151a9c0, 0x151c4a0, 0x170fc40, 0x1a3f300, 0x1a40210, 0x1a4aeb0, 0x167db30, 0x1507fc0, 0x150dac0, 0x15279a0, 0x152e170, 0x1554d40, 0x155ec80, 0x187fe50, 0x1964490, 0x15cc7c0, 0x1561e40, 0x19fc3a0, 0x5ed5c70, 0x153a0e0, 0x176b1e0, 0x1718b20, 0x1a42b10, 0x19c0c10, 0x19cbcb0, 0x1a29f10, 0x178d800, 0x17ea510, 0x17e2200, 0x1a6b410, 0x1754a70, 0x17b9a00, 0x1ff4520, 0x177c640, 0x17aa3f0, 0x17aa990, 0x17abfc0, 0x17aeb80, 0x17b7eb0, 0x17baa90, 0x17cc150, 0x17d34d0, 0x17e6610, 0x1808740, 0x180ad50, 0x18103d0, 0x1811ae0, 0x18131f0, 0x181bf00, 0x1825fb0, 0x1827640, 0x1829270, 0x1829da0, 0x182aea0, 0x182ba60, 0x1834240, 0x163ea10, 0x17613d0, 0x1967ea0, 0x1763490, 0x1751500, 0x1716a80, 0x1ff0260, 0x1777f50, 0x1787fe0, 0x1788550, 0x178a580, 0x17a67a0, 0x17a6d10, 0x17b48b0, 0x17c1d60, 0x17d9b60, 0x17f0060, 0x17f7850, 0x180cdf0, 0x18362c0, 0x183ff50...}, _dimension = 3, _totalCharge = 0, _totalSpin = 2871301902, _c = 0x5bdafc0, _vconf = std::vector of length 1, capacity 1 = {0x5bdafc0}, _energy = 0, _natoms = 6301, _nbonds = 5428, _residue = std::vector of length 1149, capacity 2048 = {0x5b0e1d0, 0x5b0e3b0, 0x5b0e590, 0x5b0e990, 0x5b0ed00, 0x5b0f070, 0x5b0f1c0, 0x5b0f3a0, 0x5b0f7a0, 0x5b0fba0, 0x5b0fcf0, 0x5b0fdb0, 0x5b0ff90, 0x5b10170, 0x5b108a0, 0x5b10cc0, 0x5b111a0, 0x5b114c0, 0x5b11c20, 0x5b12160, 0x5b128c0, 0x5b13020, 0x5b13440, 0x5b13920, 0x5b14080, 0x5b14530, 0x5b14c90, 0x5b153f0, 0x5b15b50, 0x5b15f70, 0x5b166d0, 0x5b16be0, 0x5b170c0, 0x5b11260, 0x5b175a0, 0x5b17d00, 0x5b181e0, 0x5b18690, 0x5b18b70, 0x5b192d0, 0x5b19a30, 0x5b19cd0, 0x5b1a1e0, 0x5b1a940, 0x5b1b0a0, 0x5b1b800, 0x5b1bf60, 0x5b1c6c0, 0x5b1cae0, 0x5b1cf00, 0x5b1d320, 0x5b1d5c0, 0x5b1dd20, 0x5b1e480, 0x5b1ebe0, 0x5b1f000, 0x5b1f510, 0x5b1f930, 0x5b1fde0, 0x5b20540, 0x5b20ca0, 0x5b210c0, 0x5b214e0, 0x5b21c40, 0x5b22060, 0x5b22750, 0x5b22c30, 0x5b23280, 0x5b238a0, 0x5b23b40, 0x5b23f60, 0x5b24440, 0x5b246e0, 0x5b24e40, 0x5b252f0, 0x5b25710, 0x5b25bf0, 0x5b26100, 0x5b26860, 0x5b26fc0, 0x5b273e0, 0x5b27800, 0x5b27f60, 0x5b286c0, 0x5b28e20, 0x5b29580, 0x5b29a30, 0x5b29e50, 0x5b2a0f0, 0x5b2a630, 0x5b2aae0, 0x5b2af00, 0x5b2b410, 0x5b2b890, 0x5b2bb30, 0x5b2c290, 0x5b2c9f0, 0x5b2ce10, 0x5b2d350, 0x5b2dab0, 0x5b2e210, 0x5b2e970, 0x5b2ee20, 0x5b2f580, 0x5b2f820, 0x5b2ff80, 0x5b306e0, 0x5b30b00, 0x5b30fb0, 0x5b313d0, 0x5b317f0, 0x5b31f50, 0x5b326b0, 0x5b32b90, 0x5b32e30, 0x5b330d0, 0x5b33830, 0x5b33c50, 0x5b34130, 0x5b34670, 0x5b34a90, 0x5b34eb0, 0x5b352d0, 0x5b356f0, 0x5b35e50, 0x5b362d0, 0x5b366f0, 0x5b36b70, 0x5b37020, 0x5b37a00, 0x5b37eb0, 0x5b38180, 0x5b388e0, 0x5b39040, 0x5b394c0, 0x5b399d0, 0x5b39e50, 0x5b3a0f0, 0x5b3a570, 0x5b3a990, 0x5b3b0f0, 0x5b3b850, 0x5b3bfb0, 0x5b3c430, 0x5b3c8e0, 0x5b3cd90, 0x5b3d240, 0x5b3d720, 0x5b3dd70, 0x5b3e390, 0x5b3eaf0, 0x5b3f000, 0x5b3f760, 0x5b3fbe0, 0x5b400f0, 0x5b40850, 0x5b40d30, 0x5b40fd0, 0x5b41730, 0x5b41c70, 0x5b420f0, 0x5b42570, 0x5b42cd0, 0x5b43430, 0x5b43b90, 0x5b43fb0, 0x5b444f0, 0x5b44910, 0x5b44d90, 0x5b451b0, 0x5b45910, 0x5b46070, 0x5b46490, 0x5b46730, 0x5b46e90, 0x5b47310, 0x5b47a70, 0x5b481d0, 0x5b486e0, 0x5b48e40, 0x5b492f0, 0x5b49710, 0x5b49b30, 0x5b49fe0, 0x5b4a280, 0x5b4a9e0, 0x5b4b140, 0x5b4b8a0, 0x5b4bd50, 0x5b4c4b0, 0x5b4cc10, 0x5b4d370, 0x5b4d790, 0x5b4dc70, 0x5b4e150, 0x5b4e570, 0x5b4e9f0, 0x5b4f150, 0x5b4f8b0, 0x5b4fd60...}, _internals = std::vector of length 0, capacity 0, _mod = 0} >: dimension = "\000\000\000\000\001\000\000\000@\326\006\253\252*\000\000\035\000\000\000\000\000\000\000`\313\034\255\252*\000\000\000\260\301\005\000\000\000\000\350\220\214\260\252*\000\000 \003\000\000\000\000\000\000\001", '\000' <repeats 31 times>, "0\000\000\000<\000\000\000\\\000\000\000n\000\000\000w\000\000\000|\000\000\000\035\000\000\000\000\000\000\000@\326\006\253\252*\000\000\360\002\000\000\000\000\000\000`\313\034\255\252*\000\000\000\320\272\004\000\000\000\000\350\220\214\260\252*\000\000\020\333\272\004\000\000\000\000\240u\272\004\000\000\000\000\240u\272\004\000\000\000\000\240u\272\004\000\000\000\000\000\000\000\000\001\000\000\000\251\232\034\255\252*\000\000\000x\n\001\000\000\000\000\023\360\034\255\252*\000\000\360\002\000\000\002\000\000\000\000x\n\001\000\000\000\000\240u\272\004\000\000\000\000\300\357\034\255\252*\000\000\000\b8\256\252*\000\000\030w\272\004\000\000\000\000\300\334\272\004"...<Address 0x7fff9557e000 out of bounds> >:#8 0x00002aaaac108815 in OpenBabel::OBConversion::Write (this=this@entry=0x7fff95578c20, pOb=pOb@entry=0x7fff95578b10, pos=pos@entry=0x7fff95578590) at /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/src/obconversion.cpp:889 >: zOut = {<zlib_stream::basic_zip_streambuf<char, std::char_traits<char> >> = {<std::basic_streambuf<char, std::char_traits<char> >> = {_vptr.basic_streambuf = 0x2aaaac2126b8 <vtable for zlib_stream::basic_zip_ostream<char, std::char_traits<char> >+24>, _M_in_beg = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_in_cur = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_in_end = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_out_beg = 0x4bab9e0 "", _M_out_cur = 0x4bab9e0 "", _M_out_end = 0x4bac9df "", _M_buf_locale = {static none = 0, static ctype = 1, static numeric = 2, static collate = 4, static time = 8, static monetary = 16, static messages = 32, static all = 63, _M_impl = 0x2aaaac76eae0 <(anonymous namespace)::c_locale_impl>, static _S_classic = 0x2aaaac76eae0 <(anonymous namespace)::c_locale_impl>, static _S_global = 0x2aaaac76eae0 <(anonymous namespace)::c_locale_impl>, static _S_categories = 0x2aaaac7536c0 <__gnu_cxx::category_names>, static _S_once = 2}}, _ostream = @0x7fff95578590, _zip_stream = {next_in = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, avail_in = 0, total_in = 0, next_out = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, avail_out = 0, total_out = 0, msg = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, state = 0x5c11d20, zalloc = 0x2aaaaac7e720 <zcalloc>, zfree = 0x2aaaaac7e730 <zcfree>, opaque = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, data_type = 2, adler = 1, reserved = 58717104}, _err = 0, _output_buffer = std::vector of length 4096, capacity 4096 = {0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000'...}, _buffer = std::vector of length 4096, capacity 4096 = {0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000', 0 '\000'...}, _crc = 0}, <std::basic_ostream<char, std::char_traits<char> >> = {<std::basic_ios<char, std::char_traits<char> >> = {<std::ios_base> = {_vptr.ios_base = 0x2aaaac212768 <vtable for zlib_stream::basic_zip_ostream<char, std::char_traits<char> >+200>, static boolalpha = std::_S_boolalpha, static dec = std::_S_dec, static fixed = std::_S_fixed, static hex = std::_S_hex, static internal = std::_S_internal, static left = std::_S_left, static oct = std::_S_oct, static right = std::_S_right, static scientific = std::_S_scientific, static showbase = std::_S_showbase, static showpoint = std::_S_showpoint, static showpos = std::_S_showpos, static skipws = std::_S_skipws, static unitbuf = std::_S_unitbuf, static uppercase = std::_S_uppercase, static adjustfield = std::_S_adjustfield, static basefield = std::_S_basefield, static floatfield = std::_S_floatfield, static badbit = std::_S_badbit, static eofbit = std::_S_eofbit, static failbit = std::_S_failbit, static goodbit = std::_S_goodbit, static app = std::_S_app, static ate = std::_S_ate, static binary = std::_S_bin, static in = std::_S_in, static out = std::_S_out, static trunc = std::_S_trunc, static beg = std::_S_beg, static cur = std::_S_cur, static end = std::_S_end, _M_precision = 6, _M_width = 0, _M_flags = 4098, _M_exception = std::_S_goodbit, _M_streambuf_state = std::_S_goodbit, _M_callbacks = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_word_zero = {_M_pword = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_iword = 0}, _M_local_word = {{_M_pword = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_iword = 0}, {_M_pword = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_iword = 0}, {_M_pword = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_iword = 0}, {_M_pword = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_iword = 0}, {_M_pword = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_iword = 0}, {_M_pword = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_iword = 0}, {_M_pword = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_iword = 0}, {_M_pword = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_iword = 0}}, _M_word_size = 8, _M_word = 0x7fff95578418, _M_ios_locale = {static none = 0, static ctype = 1, static numeric = 2, static collate = 4, static time = 8, static monetary = 16, static messages = 32, static all = 63, _M_impl = 0x2aaaac76eae0 <(anonymous namespace)::c_locale_impl>, static _S_classic = 0x2aaaac76eae0 <(anonymous namespace)::c_locale_impl>, static _S_global = 0x2aaaac76eae0 <(anonymous namespace)::c_locale_impl>, static _S_categories = 0x2aaaac7536c0 <__gnu_cxx::category_names>, static _S_once = 2}}, _M_tie = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_fill = 0 '\000', _M_fill_init = false, _M_streambuf = 0x7fff955782d0, _M_ctype = 0x2aaaac76ed60 <(anonymous namespace)::ctype_c>, _M_num_put = 0x2aaaac76f080 <(anonymous namespace)::num_put_c>, _M_num_get = 0x2aaaac76f070 <(anonymous namespace)::num_get_c>}, _vptr.basic_ostream = 0x2aaaac212740 <vtable for zlib_stream::basic_zip_ostream<char, std::char_traits<char> >+160>}, _is_gzip = false, _added_footer = false} >: cNumericLocale = {static none = 0, static ctype = 1, static numeric = 2, static collate = 4, static time = 8, static monetary = 16, static messages = 32, static all = 63, _M_impl = 0x197b0a0, static _S_classic = 0x2aaaac76eae0 <(anonymous namespace)::c_locale_impl>, static _S_global = 0x2aaaac76eae0 <(anonymous namespace)::c_locale_impl>, static _S_categories = 0x2aaaac7536c0 <__gnu_cxx::category_names>, static _S_once = 2} >: success = <optimized out> >: pOrigOutStream = 0x7fff95578590 >: originalLocale = {static none = 0, static ctype = 1, static numeric = 2, static collate = 4, static time = 8, static monetary = 16, static messages = 32, static all = 63, _M_impl = 0x2aaaac76eae0 <(anonymous namespace)::c_locale_impl>, static _S_classic = 0x2aaaac76eae0 <(anonymous namespace)::c_locale_impl>, static _S_global = 0x2aaaac76eae0 <(anonymous namespace)::c_locale_impl>, static _S_categories = 0x2aaaac7536c0 <__gnu_cxx::category_names>, static _S_once = 2} >:#9 0x00002aaaac10df4a in OpenBabel::OBConversion::WriteString (this=0x7fff95578c20, pOb=0x7fff95578b10, trimWhitespace=false) at /var/tmp/portage/sci-chemistry/openbabel-2.3.2/work/openbabel-2.3.2/src/obconversion.cpp:912 >: oldStream = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >: >: newStream = {<std::basic_iostream<char, std::char_traits<char> >> = {<std::basic_istream<char, std::char_traits<char> >> = {<std::basic_ios<char, std::char_traits<char> >> = {<std::ios_base> = {_vptr.ios_base = 0x2aaaac757268 <vtable for std::basic_stringstream<char, std::char_traits<char>, std::allocator<char> >+104>, static boolalpha = std::_S_boolalpha, static dec = std::_S_dec, static fixed = std::_S_fixed, static hex = std::_S_hex, static internal = std::_S_internal, static left = std::_S_left, static oct = std::_S_oct, static right = std::_S_right, static scientific = std::_S_scientific, static showbase = std::_S_showbase, static showpoint = std::_S_showpoint, static showpos = std::_S_showpos, static skipws = std::_S_skipws, static unitbuf = std::_S_unitbuf, static uppercase = std::_S_uppercase, static adjustfield = std::_S_adjustfield, static basefield = std::_S_basefield, static floatfield = std::_S_floatfield, static badbit = std::_S_badbit, static eofbit = std::_S_eofbit, static failbit = std::_S_failbit, static goodbit = std::_S_goodbit, static app = std::_S_app, static ate = std::_S_ate, static binary = std::_S_bin, static in = std::_S_in, static out = std::_S_out, static trunc = std::_S_trunc, static beg = std::_S_beg, static cur = std::_S_cur, static end = std::_S_end, _M_precision = 6, _M_width = 0, _M_flags = 4098, _M_exception = std::_S_goodbit, _M_streambuf_state = std::_S_goodbit, _M_callbacks = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_word_zero = {_M_pword = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_iword = 0}, _M_local_word = {{_M_pword = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_iword = 0}, {_M_pword = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_iword = 0}, {_M_pword = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_iword = 0}, {_M_pword = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_iword = 0}, {_M_pword = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_iword = 0}, {_M_pword = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_iword = 0}, {_M_pword = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_iword = 0}, {_M_pword = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_iword = 0}}, _M_word_size = 8, _M_word = 0x7fff95578628, _M_ios_locale = {static none = 0, static ctype = 1, static numeric = 2, static collate = 4, static time = 8, static monetary = 16, static messages = 32, static all = 63, _M_impl = 0x197b0a0, static _S_classic = 0x2aaaac76eae0 <(anonymous namespace)::c_locale_impl>, static _S_global = 0x2aaaac76eae0 <(anonymous namespace)::c_locale_impl>, static _S_categories = 0x2aaaac7536c0 <__gnu_cxx::category_names>, static _S_once = 2}}, _M_tie = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_fill = 0 '\000', _M_fill_init = false, _M_streambuf = 0x7fff95578598, _M_ctype = 0x2aaaac76ed60 <(anonymous namespace)::ctype_c>, _M_num_put = 0x2aaaac76f080 <(anonymous namespace)::num_put_c>, _M_num_get = 0x2aaaac76f070 <(anonymous namespace)::num_get_c>}, _vptr.basic_istream = 0x2aaaac757218 <vtable for std::basic_stringstream<char, std::char_traits<char>, std::allocator<char> >+24>, _M_gcount = 0}, <std::basic_ostream<char, std::char_traits<char> >> = {_vptr.basic_ostream = 0x2aaaac757240 <vtable for std::basic_stringstream<char, std::char_traits<char>, std::allocator<char> >+64>}, <No data fields>}, _M_stringbuf = {<std::basic_streambuf<char, std::char_traits<char> >> = {_vptr.basic_streambuf = 0x2aaaac756e30 <vtable for std::basic_stringbuf<char, std::char_traits<char>, std::allocator<char> >+16>, _M_in_beg = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_in_cur = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_in_end = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_out_beg = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_out_cur = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_out_end = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, _M_buf_locale = {static none = 0, static ctype = 1, static numeric = 2, static collate = 4, static time = 8, static monetary = 16, static messages = 32, static all = 63, _M_impl = 0x197b0a0, static _S_classic = 0x2aaaac76eae0 <(anonymous namespace)::c_locale_impl>, static _S_global = 0x2aaaac76eae0 <(anonymous namespace)::c_locale_impl>, static _S_categories = 0x2aaaac7536c0 <__gnu_cxx::category_names>, static _S_once = 2}}, _M_mode = (std::_S_in | std::_S_out), _M_string = ""}} >: temp = "" >:#10 0x0000000000422cb6 in Avogadro::MainWindow::exportGraphics (this=this@entry=0x1276eb0) at /var/tmp/portage/sci-chemistry/avogadro-1.1.0/work/avogadro-1.1.0/avogadro/src/mainwindow.cpp:1711 >: exportImage = {<QPaintDevice> = {_vptr.QPaintDevice = 0x2aaaabc52cd0 <vtable for QImage+16>, painters = 0}, d = 0x15b7910} >: obmol = {<OpenBabel::OBBase> = {_vptr.OBBase = 0x2aaaac212350 <vtable for OpenBabel::OBMol+16>, _vdata = std::vector of length 34, capacity 64 = {0x1a3b0c0, 0x5c00860, 0x5c00580, 0x2c54230, 0x2c2b2f0, 0x5c1b520, 0x5c00940, 0x12e8320, 0x1a4a350, 0x1470480, 0x5c1a460, 0x4b31b50, 0x4b318f0, 0x4b31230, 0x4b313d0, 0x12e4300, 0x1597170, 0x12e3e80, 0x18d2330, 0x4b3c680, 0x1302200, 0x166b750, 0x171b350, 0x131b8f0, 0x4b3cbe0, 0x1650fa0, 0x16501f0, 0x164cb00, 0x1a4c760, 0x5c1a160, 0x163ff30, 0x4ba6780, 0x158f9b0, 0x17124e0}}, _flags = 1052430, _autoPartialCharge = true, _autoFormalCharge = true, _title = "", _vatom = std::vector of length 6337, capacity 6338 = {0x12d1350, 0x15c06a0, 0x16c24a0, 0x1312fb0, 0x190b190, 0x16a60b0, 0x18f6450, 0x16b6710, 0x165fef0, 0x194c5f0, 0x1fef700, 0x12dc640, 0x16b9940, 0x19141c0, 0x4b84080, 0x3fa7b00, 0x4b722a0, 0x4b9d7d0, 0x12df150, 0x446fb60, 0x12ea700, 0x12d7150, 0x16c8f30, 0x13297a0, 0x12df380, 0x18e68c0, 0x167a5f0, 0x19b2470, 0x152cd70, 0x1838320, 0x17307a0, 0x1665d30, 0x15816d0, 0x16962e0, 0x1318b30, 0x12d3a30, 0x1668610, 0x1fee370, 0x1695bd0, 0x166b340, 0x194ead0, 0x44719b0, 0x190cb40, 0x1ab0380, 0x16a6520, 0x1904fc0, 0x1910bb0, 0x131a350, 0x190c820, 0x12f05a0, 0x194c6e0, 0x1578c50, 0x16d04f0, 0x190e9d0, 0x1ab6360, 0x1903680, 0x17bd930, 0x6032a40, 0x15de6c0, 0x1ff53c0, 0x5f68790, 0x4b6de50, 0x18f5630, 0x193c140, 0x12cd7f0, 0x15ce420, 0x1ab5c30, 0x1675f70, 0x15b27c0, 0x166e070, 0x12f0dd0, 0x3b90c50, 0x4b8bcf0, 0x4b79280, 0x4b91d90, 0x4b93340, 0x5fcc900, 0x4b78af0, 0x4470990, 0x1aa4e90, 0x1955f90, 0x1aa2bc0, 0x3f98a60, 0x1935c40, 0x193e340, 0x12faa10, 0x1938130, 0x1934300, 0x15c0e50, 0x165b090, 0x18ec100, 0x15b7340, 0x3f98330, 0x1aa7220, 0x15a8930, 0x1973360, 0x18a7830, 0x16c36a0, 0x15ab750, 0x1aa2fb0, 0x16a37f0, 0x1945930, 0x19384f0, 0x1943650, 0x1945480, 0x127e0b0, 0x16cf3b0, 0x165ae50, 0x4b96ae0, 0x19360f0, 0x1955c10, 0x15b28c0, 0x4b93430, 0x5f7d160, 0x12f3c90, 0x193e000, 0x193bf00, 0x4471700, 0x1ff5180, 0x5fc96e0, 0x16ad130, 0x16aa1e0, 0x1ff5c40, 0x1689e80, 0x1ff5060, 0x1308df0, 0x13041c0, 0x166f9a0, 0x1ff4d00, 0x1ff4e20, 0x15f3d50, 0x4b6c2e0, 0x15cca20, 0x12e11b0, 0x193a4a0, 0x15e2420, 0x1ff4ab0, 0x1ff5d60, 0x1940600, 0x16a2a20, 0x15877a0, 0x1ff4f40, 0x165a7f0, 0x159e450, 0x1593360, 0x15f3730, 0x16a0680, 0x1ff4990, 0x193a030, 0x167be80, 0x1ff5690, 0x193ffb0, 0x1ff52a0, 0x1ff5570, 0x157bef0, 0x12e1a50, 0x1ff4be0, 0x1ff5e80, 0x1943190, 0x1aa4a90, 0x15dc9d0, 0x1940140, 0x4b95400, 0x5fcd130, 0x14784a0, 0x131cc40, 0x16c59e0, 0x168cb30, 0x12f6c50, 0x1677d30, 0x15e0b50, 0x16a12f0, 0x16cb3c0, 0x16bd780, 0x15ccb80, 0x157b140, 0x4b7f210, 0x15ec3c0, 0x132e6a0, 0x15cb550, 0x1585190, 0x12f8900, 0x16ca7a0, 0x12fc230, 0x159bf00, 0x15f00d0, 0x15b6e40, 0x132ade0, 0x15f5a00, 0x157e5c0, 0x15e0090, 0x15cb6d0, 0x1674e00, 0x15a0d10, 0x16a1b20, 0x12e6ce0, 0x16a7dc0, 0x1679250, 0x4b6c050, 0x254de00...}, _atomIds = std::vector of length 6301, capacity 8192 = {0x12d1350, 0x15c06a0, 0x16c24a0, 0x1312fb0, 0x190b190, 0x16a60b0, 0x18f6450, 0x16b6710, 0x165fef0, 0x194c5f0, 0x1fef700, 0x12dc640, 0x16b9940, 0x19141c0, 0x4b84080, 0x3fa7b00, 0x4b722a0, 0x4b9d7d0, 0x12df150, 0x446fb60, 0x12ea700, 0x12d7150, 0x16c8f30, 0x13297a0, 0x12df380, 0x18e68c0, 0x167a5f0, 0x19b2470, 0x152cd70, 0x1838320, 0x17307a0, 0x1665d30, 0x15816d0, 0x16962e0, 0x1318b30, 0x12d3a30, 0x1668610, 0x1fee370, 0x1695bd0, 0x166b340, 0x194ead0, 0x44719b0, 0x190cb40, 0x1ab0380, 0x16a6520, 0x1904fc0, 0x1910bb0, 0x131a350, 0x190c820, 0x12f05a0, 0x194c6e0, 0x1578c50, 0x16d04f0, 0x190e9d0, 0x1ab6360, 0x1903680, 0x17bd930, 0x6032a40, 0x15de6c0, 0x1ff53c0, 0x5f68790, 0x4b6de50, 0x18f5630, 0x193c140, 0x12cd7f0, 0x15ce420, 0x1ab5c30, 0x1675f70, 0x15b27c0, 0x166e070, 0x12f0dd0, 0x3b90c50, 0x4b8bcf0, 0x4b79280, 0x4b91d90, 0x4b93340, 0x5fcc900, 0x4b78af0, 0x4470990, 0x1aa4e90, 0x1955f90, 0x1aa2bc0, 0x3f98a60, 0x1935c40, 0x193e340, 0x12faa10, 0x1938130, 0x1934300, 0x15c0e50, 0x165b090, 0x18ec100, 0x15b7340, 0x3f98330, 0x1aa7220, 0x15a8930, 0x1973360, 0x18a7830, 0x16c36a0, 0x15ab750, 0x1aa2fb0, 0x16a37f0, 0x1945930, 0x19384f0, 0x1943650, 0x1945480, 0x127e0b0, 0x16cf3b0, 0x165ae50, 0x4b96ae0, 0x19360f0, 0x1955c10, 0x15b28c0, 0x4b93430, 0x5f7d160, 0x12f3c90, 0x193e000, 0x193bf00, 0x4471700, 0x1ff5180, 0x5fc96e0, 0x16ad130, 0x16aa1e0, 0x1ff5c40, 0x1689e80, 0x1ff5060, 0x1308df0, 0x13041c0, 0x166f9a0, 0x1ff4d00, 0x1ff4e20, 0x15f3d50, 0x4b6c2e0, 0x15cca20, 0x12e11b0, 0x193a4a0, 0x15e2420, 0x1ff4ab0, 0x1ff5d60, 0x1940600, 0x16a2a20, 0x15877a0, 0x1ff4f40, 0x165a7f0, 0x159e450, 0x1593360, 0x15f3730, 0x16a0680, 0x1ff4990, 0x193a030, 0x167be80, 0x1ff5690, 0x193ffb0, 0x1ff52a0, 0x1ff5570, 0x157bef0, 0x12e1a50, 0x1ff4be0, 0x1ff5e80, 0x1943190, 0x1aa4a90, 0x15dc9d0, 0x1940140, 0x4b95400, 0x5fcd130, 0x14784a0, 0x131cc40, 0x16c59e0, 0x168cb30, 0x12f6c50, 0x1677d30, 0x15e0b50, 0x16a12f0, 0x16cb3c0, 0x16bd780, 0x15ccb80, 0x157b140, 0x4b7f210, 0x15ec3c0, 0x132e6a0, 0x15cb550, 0x1585190, 0x12f8900, 0x16ca7a0, 0x12fc230, 0x159bf00, 0x15f00d0, 0x15b6e40, 0x132ade0, 0x15f5a00, 0x157e5c0, 0x15e0090, 0x15cb6d0, 0x1674e00, 0x15a0d10, 0x16a1b20, 0x12e6ce0, 0x16a7dc0, 0x1679250, 0x4b6c050, 0x254de00...}, _vbond = std::vector of length 5446, capacity 6338 = {0x4b84250, 0x4b70230, 0x4b6ddc0, 0x446fe10, 0x4b6d770, 0x19559c0, 0x12f5490, 0x15b03d0, 0x1ab2070, 0x167fe30, 0x16a34a0, 0x175be70, 0x16e4460, 0x16e6700, 0x16e8aa0, 0x16ec710, 0x15359f0, 0x1a3f0c0, 0x167d740, 0x1a6d430, 0x1694580, 0x1582940, 0x16ccc80, 0x1766730, 0x12db8c0, 0x15a5e40, 0x15e2d80, 0x1577af0, 0x12fbc70, 0x131c1b0, 0x12e4af0, 0x1a4ac70, 0x159d170, 0x1a7a8d0, 0x1a7add0, 0x171e980, 0x15fa7d0, 0x16480b0, 0x1648ad0, 0x1652c70, 0x144c3f0, 0x144c8d0, 0x1456090, 0x1456570, 0x1768e90, 0x1466de0, 0x1477a20, 0x1505f60, 0x173d6c0, 0x1512440, 0x173e0d0, 0x153b230, 0x153b730, 0x153fbf0, 0x15400d0, 0x1545f00, 0x1550e70, 0x1551350, 0x155c2e0, 0x1880fc0, 0x18814a0, 0x1881e70, 0x1597430, 0x189e320, 0x18b3d30, 0x18b9b60, 0x18ba5a0, 0x18c0510, 0x18c09f0, 0x18e78a0, 0x16dde30, 0x16df8b0, 0x16e75f0, 0x16f3ef0, 0x16f43d0, 0x1702030, 0x1701b50, 0x17069d0, 0x1566dc0, 0x1568690, 0x177c8e0, 0x177de70, 0x179f590, 0x17a0080, 0x17fc0e0, 0x17fc690, 0x16697e0, 0x1826250, 0x1843920, 0x184b4b0, 0x1863340, 0x1865900, 0x199def0, 0x199ea00, 0x19d93e0, 0x19dba40, 0x19fee00, 0x1a05f70, 0x1a0dae0, 0x17907f0, 0x174afd0, 0x1760060, 0x173e8f0, 0x1747030, 0x18cfc70, 0x1786750, 0x179b380, 0x17cb3c0, 0x17dbe30, 0x17f8580, 0x181ed00, 0x1875250, 0x1878310, 0x19ae3f0, 0x19bcd00, 0x19f1700, 0x19f5cb0, 0x196e670, 0x1a7faa0, 0x1a854d0, 0x1a624d0, 0x18998a0, 0x1518220, 0x151a9c0, 0x151c4a0, 0x170fc40, 0x1a3f300, 0x1a40210, 0x1a4aeb0, 0x167db30, 0x1507fc0, 0x150dac0, 0x15279a0, 0x152e170, 0x1554d40, 0x155ec80, 0x187fe50, 0x1964490, 0x15cc7c0, 0x1561e40, 0x19fc3a0, 0x5ed5c70, 0x153a0e0, 0x176b1e0, 0x1718b20, 0x1a42b10, 0x19c0c10, 0x19cbcb0, 0x1a29f10, 0x178d800, 0x17ea510, 0x17e2200, 0x1a6b410, 0x1754a70, 0x17b9a00, 0x1ff4520, 0x177c640, 0x17aa3f0, 0x17aa990, 0x17abfc0, 0x17aeb80, 0x17b7eb0, 0x17baa90, 0x17cc150, 0x17d34d0, 0x17e6610, 0x1808740, 0x180ad50, 0x18103d0, 0x1811ae0, 0x18131f0, 0x181bf00, 0x1825fb0, 0x1827640, 0x1829270, 0x1829da0, 0x182aea0, 0x182ba60, 0x1834240, 0x163ea10, 0x17613d0, 0x1967ea0, 0x1763490, 0x1751500, 0x1716a80, 0x1ff0260, 0x1777f50, 0x1787fe0, 0x1788550, 0x178a580, 0x17a67a0, 0x17a6d10, 0x17b48b0, 0x17c1d60, 0x17d9b60, 0x17f0060, 0x17f7850, 0x180cdf0, 0x18362c0, 0x183ff50...}, _bondIds = std::vector of length 5428, capacity 8192 = {0x4b84250, 0x4b70230, 0x4b6ddc0, 0x446fe10, 0x4b6d770, 0x19559c0, 0x12f5490, 0x15b03d0, 0x1ab2070, 0x167fe30, 0x16a34a0, 0x175be70, 0x16e4460, 0x16e6700, 0x16e8aa0, 0x16ec710, 0x15359f0, 0x1a3f0c0, 0x167d740, 0x1a6d430, 0x1694580, 0x1582940, 0x16ccc80, 0x1766730, 0x12db8c0, 0x15a5e40, 0x15e2d80, 0x1577af0, 0x12fbc70, 0x131c1b0, 0x12e4af0, 0x1a4ac70, 0x159d170, 0x1a7a8d0, 0x1a7add0, 0x171e980, 0x15fa7d0, 0x16480b0, 0x1648ad0, 0x1652c70, 0x144c3f0, 0x144c8d0, 0x1456090, 0x1456570, 0x1768e90, 0x1466de0, 0x1477a20, 0x1505f60, 0x173d6c0, 0x1512440, 0x173e0d0, 0x153b230, 0x153b730, 0x153fbf0, 0x15400d0, 0x1545f00, 0x1550e70, 0x1551350, 0x155c2e0, 0x1880fc0, 0x18814a0, 0x1881e70, 0x1597430, 0x189e320, 0x18b3d30, 0x18b9b60, 0x18ba5a0, 0x18c0510, 0x18c09f0, 0x18e78a0, 0x16dde30, 0x16df8b0, 0x16e75f0, 0x16f3ef0, 0x16f43d0, 0x1702030, 0x1701b50, 0x17069d0, 0x1566dc0, 0x1568690, 0x177c8e0, 0x177de70, 0x179f590, 0x17a0080, 0x17fc0e0, 0x17fc690, 0x16697e0, 0x1826250, 0x1843920, 0x184b4b0, 0x1863340, 0x1865900, 0x199def0, 0x199ea00, 0x19d93e0, 0x19dba40, 0x19fee00, 0x1a05f70, 0x1a0dae0, 0x17907f0, 0x174afd0, 0x1760060, 0x173e8f0, 0x1747030, 0x18cfc70, 0x1786750, 0x179b380, 0x17cb3c0, 0x17dbe30, 0x17f8580, 0x181ed00, 0x1875250, 0x1878310, 0x19ae3f0, 0x19bcd00, 0x19f1700, 0x19f5cb0, 0x196e670, 0x1a7faa0, 0x1a854d0, 0x1a624d0, 0x18998a0, 0x1518220, 0x151a9c0, 0x151c4a0, 0x170fc40, 0x1a3f300, 0x1a40210, 0x1a4aeb0, 0x167db30, 0x1507fc0, 0x150dac0, 0x15279a0, 0x152e170, 0x1554d40, 0x155ec80, 0x187fe50, 0x1964490, 0x15cc7c0, 0x1561e40, 0x19fc3a0, 0x5ed5c70, 0x153a0e0, 0x176b1e0, 0x1718b20, 0x1a42b10, 0x19c0c10, 0x19cbcb0, 0x1a29f10, 0x178d800, 0x17ea510, 0x17e2200, 0x1a6b410, 0x1754a70, 0x17b9a00, 0x1ff4520, 0x177c640, 0x17aa3f0, 0x17aa990, 0x17abfc0, 0x17aeb80, 0x17b7eb0, 0x17baa90, 0x17cc150, 0x17d34d0, 0x17e6610, 0x1808740, 0x180ad50, 0x18103d0, 0x1811ae0, 0x18131f0, 0x181bf00, 0x1825fb0, 0x1827640, 0x1829270, 0x1829da0, 0x182aea0, 0x182ba60, 0x1834240, 0x163ea10, 0x17613d0, 0x1967ea0, 0x1763490, 0x1751500, 0x1716a80, 0x1ff0260, 0x1777f50, 0x1787fe0, 0x1788550, 0x178a580, 0x17a67a0, 0x17a6d10, 0x17b48b0, 0x17c1d60, 0x17d9b60, 0x17f0060, 0x17f7850, 0x180cdf0, 0x18362c0, 0x183ff50...}, _dimension = 3, _totalCharge = 0, _totalSpin = 2871301902, _c = 0x5bdafc0, _vconf = std::vector of length 1, capacity 1 = {0x5bdafc0}, _energy = 0, _natoms = 6301, _nbonds = 5428, _residue = std::vector of length 1149, capacity 2048 = {0x5b0e1d0, 0x5b0e3b0, 0x5b0e590, 0x5b0e990, 0x5b0ed00, 0x5b0f070, 0x5b0f1c0, 0x5b0f3a0, 0x5b0f7a0, 0x5b0fba0, 0x5b0fcf0, 0x5b0fdb0, 0x5b0ff90, 0x5b10170, 0x5b108a0, 0x5b10cc0, 0x5b111a0, 0x5b114c0, 0x5b11c20, 0x5b12160, 0x5b128c0, 0x5b13020, 0x5b13440, 0x5b13920, 0x5b14080, 0x5b14530, 0x5b14c90, 0x5b153f0, 0x5b15b50, 0x5b15f70, 0x5b166d0, 0x5b16be0, 0x5b170c0, 0x5b11260, 0x5b175a0, 0x5b17d00, 0x5b181e0, 0x5b18690, 0x5b18b70, 0x5b192d0, 0x5b19a30, 0x5b19cd0, 0x5b1a1e0, 0x5b1a940, 0x5b1b0a0, 0x5b1b800, 0x5b1bf60, 0x5b1c6c0, 0x5b1cae0, 0x5b1cf00, 0x5b1d320, 0x5b1d5c0, 0x5b1dd20, 0x5b1e480, 0x5b1ebe0, 0x5b1f000, 0x5b1f510, 0x5b1f930, 0x5b1fde0, 0x5b20540, 0x5b20ca0, 0x5b210c0, 0x5b214e0, 0x5b21c40, 0x5b22060, 0x5b22750, 0x5b22c30, 0x5b23280, 0x5b238a0, 0x5b23b40, 0x5b23f60, 0x5b24440, 0x5b246e0, 0x5b24e40, 0x5b252f0, 0x5b25710, 0x5b25bf0, 0x5b26100, 0x5b26860, 0x5b26fc0, 0x5b273e0, 0x5b27800, 0x5b27f60, 0x5b286c0, 0x5b28e20, 0x5b29580, 0x5b29a30, 0x5b29e50, 0x5b2a0f0, 0x5b2a630, 0x5b2aae0, 0x5b2af00, 0x5b2b410, 0x5b2b890, 0x5b2bb30, 0x5b2c290, 0x5b2c9f0, 0x5b2ce10, 0x5b2d350, 0x5b2dab0, 0x5b2e210, 0x5b2e970, 0x5b2ee20, 0x5b2f580, 0x5b2f820, 0x5b2ff80, 0x5b306e0, 0x5b30b00, 0x5b30fb0, 0x5b313d0, 0x5b317f0, 0x5b31f50, 0x5b326b0, 0x5b32b90, 0x5b32e30, 0x5b330d0, 0x5b33830, 0x5b33c50, 0x5b34130, 0x5b34670, 0x5b34a90, 0x5b34eb0, 0x5b352d0, 0x5b356f0, 0x5b35e50, 0x5b362d0, 0x5b366f0, 0x5b36b70, 0x5b37020, 0x5b37a00, 0x5b37eb0, 0x5b38180, 0x5b388e0, 0x5b39040, 0x5b394c0, 0x5b399d0, 0x5b39e50, 0x5b3a0f0, 0x5b3a570, 0x5b3a990, 0x5b3b0f0, 0x5b3b850, 0x5b3bfb0, 0x5b3c430, 0x5b3c8e0, 0x5b3cd90, 0x5b3d240, 0x5b3d720, 0x5b3dd70, 0x5b3e390, 0x5b3eaf0, 0x5b3f000, 0x5b3f760, 0x5b3fbe0, 0x5b400f0, 0x5b40850, 0x5b40d30, 0x5b40fd0, 0x5b41730, 0x5b41c70, 0x5b420f0, 0x5b42570, 0x5b42cd0, 0x5b43430, 0x5b43b90, 0x5b43fb0, 0x5b444f0, 0x5b44910, 0x5b44d90, 0x5b451b0, 0x5b45910, 0x5b46070, 0x5b46490, 0x5b46730, 0x5b46e90, 0x5b47310, 0x5b47a70, 0x5b481d0, 0x5b486e0, 0x5b48e40, 0x5b492f0, 0x5b49710, 0x5b49b30, 0x5b49fe0, 0x5b4a280, 0x5b4a9e0, 0x5b4b140, 0x5b4b8a0, 0x5b4bd50, 0x5b4c4b0, 0x5b4cc10, 0x5b4d370, 0x5b4d790, 0x5b4dc70, 0x5b4e150, 0x5b4e570, 0x5b4e9f0, 0x5b4f150, 0x5b4f8b0, 0x5b4fd60...}, _internals = std::vector of length 0, capacity 0, _mod = 0} >: output = "" >: filters = {<QList<QString>> = {{p = {static shared_null = {ref = {_q_value = 1}, alloc = 0, begin = 0, end = 0, sharable = 1, array = {0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:}}, d = 0x3b9ec20}, d = 0x3b9ec20}}, <No data fields>} >: info = {d_ptr = {d = 0x3fc5e90}} >: fileName = {static null = {<No data fields>}, static shared_null = {ref = {_q_value = 1}, alloc = 0, size = 0, data = 0x4ae3ba <QString::shared_null+26>, clean = 0, simpletext = 0, righttoleft = 0, asciiCache = 0, capacity = 0, reserved = 0, array = {0}}, static shared_empty = {ref = {_q_value = 5429}, alloc = 0, size = 0, data = 0x2aaaabfb9efa <QString::shared_empty+26>, clean = 0, simpletext = 0, righttoleft = 0, asciiCache = 0, capacity = 0, reserved = 0, array = {0}}, d = 0x1668580, static codecForCStrings = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:} >: mdlFormat = 0x2aaab7d13a80 <OpenBabel::theMOLFormat> >: settings = {<QObject> = {_vptr.QObject = 0x2aaaabfbf4d0 <vtable for QSettings+16>, static staticMetaObject = {d = {superdata = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, stringdata = 0x2aaaabf608e0 <qt_meta_stringdata_QObject> "QObject", data = 0x2aaaabf60980 <qt_meta_data_QObject>, extradata = 0x2aaaabfbd6e0 <QObject::staticMetaObjectExtraData>}}, static staticMetaObjectExtraData = {objects = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, static_metacall = 0x2aaaabe72750 <QObject::qt_static_metacall(QObject*, QMetaObject::Call, int, void**)>}, d_ptr = {d = 0x40faab0}, static staticQtMetaObject = {d = {superdata = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, stringdata = 0x2aaaabf68ec0 <qt_meta_stringdata_Qt> "Qt", data = 0x2aaaabf6c7e0 <qt_meta_data_Qt>, extradata = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:}}}, static staticMetaObject = {d = {superdata = 0x4ae6e0 <QObject::staticMetaObject>, stringdata = 0x2aaaabf71ca0 <qt_meta_stringdata_QSettings> "QSettings", data = 0x2aaaabf71cc0 <qt_meta_data_QSettings>, extradata = 0x2aaaabfbf560 <QSettings::staticMetaObjectExtraData>}}, static staticMetaObjectExtraData = {objects = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, static_metacall = 0x2aaaabec3e20 <QSettings::qt_static_metacall(QObject*, QMetaObject::Call, int, void**)>}} >: selectedFilter = {static null = {<No data fields>}, static shared_null = {ref = {_q_value = 1}, alloc = 0, size = 0, data = 0x4ae3ba <QString::shared_null+26>, clean = 0, simpletext = 0, righttoleft = 0, asciiCache = 0, capacity = 0, reserved = 0, array = {0}}, static shared_empty = {ref = {_q_value = 5429}, alloc = 0, size = 0, data = 0x2aaaabfb9efa <QString::shared_empty+26>, clean = 0, simpletext = 0, righttoleft = 0, asciiCache = 0, capacity = 0, reserved = 0, array = {0}}, d = 0x3f4caf0, static codecForCStrings = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:} >: conv = {_vptr.OBConversion = 0x2aaaac2123f0 <vtable for OpenBabel::OBConversion+16>, InFilename = "", pInStream = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, pOutStream = 0x7fff95578590, static pDefaultFormat = <optimized out>, pInFormat = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, pOutFormat = 0x2aaab7d13a80 <OpenBabel::theMOLFormat>, OptionsArray = {std::map with 0 elements, std::map with 0 elements, std::map with 0 elements}, Index = 0, StartNumber = 1, EndNumber = 0, Count = -1, m_IsFirstInput = true, m_IsLast = true, MoreFilesToCome = false, OneObjectOnly = true, ReadyToInput = 11, CheckedForGzip = false, NeedToFreeInStream = false, NeedToFreeOutStream = false, pLineEndBuf = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, static FormatFilesLoaded = 110, pOb1 = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, wInpos = {_M_off = 0, _M_state = {__count = 0, __value = {__wch = 0, __wchb = "\000\000\000"}}}, rInpos = {_M_off = 0, _M_state = {__count = 0, __value = {__wch = 0, __wchb = "\000\000\000"}}}, wInlen = 0, rInlen = 23443376, pAuxConv = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, SupportedInputFormat = std::vector of length 0, capacity 0, SupportedOutputFormat = std::vector of length 0, capacity 0} >: copyData = {static shared_null = {ref = {_q_value = 1}, alloc = 0, size = 0, data = 0x4ae4d8 <QByteArray::shared_null+24> "", array = ""}, static shared_empty = {ref = {_q_value = 1}, alloc = 0, size = 0, data = 0x2aaaabfb9d98 <QByteArray::shared_empty+24> "", array = ""}, d = 0x4ae4c0 <QByteArray::shared_null>} >: canFormat = <optimized out> >:#11 0x00000000004394ed in Avogadro::MainWindow::qt_static_metacall (_o=0x1276eb0, _c=<optimized out>, _id=10, _a=0x7fff95578f40) at /var/tmp/portage/sci-chemistry/avogadro-1.1.0/work/avogadro-1.1.0_build/avogadro/src/mainwindow.moc:176 >: _t = 0x1276eb0 >:#12 0x00002aaaabe6ba68 in QMetaObject::activate (sender=0x132e7e0, m=<optimized out>, local_signal_index=<optimized out>, argv=0x7fff95578f40) at kernel/qobject.cpp:3539 >: receiverInSameThread = true >: previousSender = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >: >: callFunction = 0x439060 <Avogadro::MainWindow::qt_static_metacall(QObject*, QMetaObject::Call, int, void**)> >: receiver = 0x1276eb0 >: currentSender = {sender = 0x132e7e0, signal = 5, ref = 1} >: method_relative = 10 >: c = 0x15a00b0 >: last = 0x15a00b0 >: methodOffset = <optimized out> >: signal_absolute_index = 5 >: empty_argv = {0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:} >: locker = {val = 19556032} >: connectionLists = 0x12a8b80 >: list = 0x12a8bf0 >: signalOffset = <optimized out> >: signal_index = <optimized out> >: currentThreadId = 46912594809152 >:#13 0x00002aaaab23c702 in QAction::triggered (this=this@entry=0x132e7e0, _t1=false) at .moc/release-shared/moc_qaction.cpp:277 >: _a = {0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, 0x7fff95578f3c} >:#14 0x00002aaaab23c8f8 in QAction::activate (this=0x132e7e0, event=<optimized out>) at kernel/qaction.cpp:1257 >: guard = 0x132e7e0 >: d = 0x165b7b0 >:#15 0x00002aaaab76b739 in QMenuPrivate::activateCausedStack (this=this@entry=0x127f280, causedStack=..., action=action@entry=0x132e7e0, self=self@entry=true, action_e=QAction::Trigger) at widgets/qmenu.cpp:1038 >: actionId = -16 >:#16 0x00002aaaab773ab5 in QMenuPrivate::activateAction (this=this@entry=0x127f280, action=action@entry=0x132e7e0, self=self@entry=true, action_e=QAction::Trigger) at widgets/qmenu.cpp:1130 >: inWhatsThisMode = false >: causedStack = {{p = {static shared_null = {ref = {_q_value = 1}, alloc = 0, begin = 0, end = 0, sharable = 1, array = {0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:}}, d = 0x213e000}, d = 0x213e000}} >:#17 0x00002aaaab776567 in QMenu::mouseReleaseEvent (this=<optimized out>, e=0x7fff955798d0) at widgets/qmenu.cpp:2372 >: d = 0x127f280 >: action = 0x132e7e0 >:#18 0x00002aaaab2a3cda in QWidget::event (this=0x127f250, event=0x7fff955798d0) at kernel/qwidget.cpp:8375 >: d = 0x127f280 >:#19 0x00002aaaab773edb in QMenu::event (this=0x127f250, e=0x7fff955798d0) at widgets/qmenu.cpp:2481 >: d = 0x127f280 >:#20 0x00002aaaab241d4c in QApplicationPrivate::notify_helper (this=this@entry=0x10c9d30, receiver=receiver@entry=0x127f250, e=e@entry=0x7fff955798d0) at kernel/qapplication.cpp:4562 >: consumed = <optimized out> >:#21 0x00002aaaab249ef7 in QApplication::notify (this=<optimized out>, receiver=0x127f250, e=0x7fff955798d0) at kernel/qapplication.cpp:4105 >: me = {<QInputEvent> = {<QEvent> = {_vptr.QEvent = 0x2aaaabc4f950 <vtable for QMouseEvent+16>, static staticMetaObject = {d = {superdata = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, stringdata = 0x2aaaabf72cc0 <qt_meta_stringdata_QEvent> "QEvent", data = 0x2aaaabf736c0 <qt_meta_data_QEvent>, extradata = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:}}, d = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, t = 3, posted = 0, spont = 1, m_accept = 1, reserved = 34}, modState = {i = 0}}, p = {xp = 55, yp = 11}, g = {xp = 811, yp = 469}, b = Qt::LeftButton, mouseState = {i = 0}} >: w = 0x127f250 >: mouse = 0x7fff955798d0 >: eventAccepted = <optimized out> >: relpos = {xp = 55, yp = 11} >: pw = {o = 0x127f250} >: d = 0x10c9d30 >: res = <optimized out> >:#22 0x00002aaaabe54f8c in QCoreApplication::notifyInternal (this=0x7fff9557a410, receiver=0x127f250, event=0x7fff955798d0) at kernel/qcoreapplication.cpp:946 >: threadData = 0x10c9ee0 >: returnValue = <optimized out> >: result = false >: cbdata = {0x127f250, 0x7fff955798d0, 0x7fff95579620} >: d = <optimized out> >:#23 0x00002aaaab247d14 in sendEvent (event=<optimized out>, receiver=<optimized out>) at ../../include/QtCore/../../src/corelib/kernel/qcoreapplication.h:231 >:No locals. >:#24 QApplicationPrivate::sendMouseEvent (receiver=0x127f250, event=0x7fff955798d0, alienWidget=warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:0x0, nativeWidget=0x127f250, buttonDown=0x2aaaabc8f540 <qt_button_down>, lastMouseReceiver=..., spontaneous=true) at kernel/qapplication.cpp:3173 >: alienGuard = {o = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:} >: receiverGuard = {o = 0x127f250} >: nativeGuard = {o = 0x127f250} >: activePopupWidget = {o = 0x127f250} >: wasLeaveAfterRelease = <optimized out> >: result = <optimized out> >:#25 0x00002aaaab2d359f in QETWidget::translateMouseEvent (this=this@entry=0x127f250, event=event@entry=0x7fff95579c60) at kernel/qapplication_x11.cpp:4450 >: receiver = <optimized out> >: widgetPos = {xp = 55, yp = 11} >: alien = <optimized out> >: e = {<QInputEvent> = {<QEvent> = {_vptr.QEvent = 0x2aaaabc4f950 <vtable for QMouseEvent+16>, static staticMetaObject = {d = {superdata = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, stringdata = 0x2aaaabf72cc0 <qt_meta_stringdata_QEvent> "QEvent", data = 0x2aaaabf736c0 <qt_meta_data_QEvent>, extradata = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:}}, d = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, t = 3, posted = 0, spont = 1, m_accept = 1, reserved = 33}, modState = {i = 0}}, p = {xp = 55, yp = 11}, g = {xp = 811, yp = 469}, b = Qt::LeftButton, mouseState = {i = 0}} >: popupChild = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >: >: activePopupWidget = 0x127f250 >: popup = 0x127f250 >: releaseAfter = <optimized out> >: oldOpenPopupCount = <optimized out> >: type = <optimized out> >: globalPos = {xp = 811, yp = 469} >: button = <optimized out> >: buttons = {i = 0} >: nextEvent = {type = 0, xany = {type = 0, serial = 6, send_event = 26728688, display = 0x8000010, window = 19395152}, xkey = {type = 0, serial = 6, send_event = 26728688, display = 0x8000010, window = 19395152, root = 46912514881088, subwindow = 140735698934256, time = 19395152, x = 71646624, y = 0, x_root = 19395152, y_root = 0, state = 17801216, keycode = 0, same_screen = -1423188145}, xbutton = {type = 0, serial = 6, send_event = 26728688, display = 0x8000010, window = 19395152, root = 46912514881088, subwindow = 140735698934256, time = 19395152, x = 71646624, y = 0, x_root = 19395152, y_root = 0, state = 17801216, button = 0, same_screen = -1423188145}, xmotion = {type = 0, serial = 6, send_event = 26728688, display = 0x8000010, window = 19395152, root = 46912514881088, subwindow = 140735698934256, time = 19395152, x = 71646624, y = 0, x_root = 19395152, y_root = 0, state = 17801216, is_hint = 0 '\000', same_screen = -1423188145}, xcrossing = {type = 0, serial = 6, send_event = 26728688, display = 0x8000010, window = 19395152, root = 46912514881088, subwindow = 140735698934256, time = 19395152, x = 71646624, y = 0, x_root = 19395152, y_root = 0, mode = 17801216, detail = 0, same_screen = -1423188145, focus = 10922, state = 2505546136}, xfocus = {type = 0, serial = 6, send_event = 26728688, display = 0x8000010, window = 19395152, mode = -1412893120, detail = 10922}, xexpose = {type = 0, serial = 6, send_event = 26728688, display = 0x8000010, window = 19395152, x = -1412893120, y = 10922, width = -1789421072, height = 32767, count = 19395152}, xgraphicsexpose = {type = 0, serial = 6, send_event = 26728688, display = 0x8000010, drawable = 19395152, x = -1412893120, y = 10922, width = -1789421072, height = 32767, count = 19395152, major_code = 0, minor_code = 71646624}, xnoexpose = {type = 0, serial = 6, send_event = 26728688, display = 0x8000010, drawable = 19395152, major_code = -1412893120, minor_code = 10922}, xvisibility = {type = 0, serial = 6, send_event = 26728688, display = 0x8000010, window = 19395152, state = -1412893120}, xcreatewindow = {type = 0, serial = 6, send_event = 26728688, display = 0x8000010, parent = 19395152, window = 46912514881088, x = -1789421072, y = 32767, width = 19395152, height = 0, border_width = 71646624, override_redirect = 0}, xdestroywindow = {type = 0, serial = 6, send_event = 26728688, display = 0x8000010, event = 19395152, window = 46912514881088}, xunmap = {type = 0, serial = 6, send_event = 26728688, display = 0x8000010, event = 19395152, window = 46912514881088, from_configure = -1789421072}, xmap = {type = 0, serial = 6, send_event = 26728688, display = 0x8000010, event = 19395152, window = 46912514881088, override_redirect = -1789421072}, xmaprequest = {type = 0, serial = 6, send_event = 26728688, display = 0x8000010, parent = 19395152, window = 46912514881088}, xreparent = {type = 0, serial = 6, send_event = 26728688, display = 0x8000010, event = 19395152, window = 46912514881088, parent = 140735698934256, x = 19395152, y = 0, override_redirect = 71646624}, xconfigure = {type = 0, serial = 6, send_event = 26728688, display = 0x8000010, event = 19395152, window = 46912514881088, x = -1789421072, y = 32767, width = 19395152, height = 0, border_width = 71646624, above = 19395152, override_redirect = 17801216}, xgravity = {type = 0, serial = 6, send_event = 26728688, display = 0x8000010, event = 19395152, window = 46912514881088, x = -1789421072, y = 32767}, xresizerequest = {type = 0, serial = 6, send_event = 26728688, display = 0x8000010, window = 19395152, width = -1412893120, height = 10922}, xconfigurerequest = {type = 0, serial = 6, send_event = 26728688, display = 0x8000010, parent = 19395152, window = 46912514881088, x = -1789421072, y = 32767, width = 19395152, height = 0, border_width = 71646624, above = 19395152, detail = 17801216, value_mask = 46912504586063}, xcirculate = {type = 0, serial = 6, send_event = 26728688, display = 0x8000010, event = 19395152, window = 46912514881088, place = -1789421072}, xcirculaterequest = {type = 0, serial = 6, send_event = 26728688, display = 0x8000010, parent = 19395152, window = 46912514881088, place = -1789421072}, xproperty = {type = 0, serial = 6, send_event = 26728688, display = 0x8000010, window = 19395152, atom = 46912514881088, time = 140735698934256, state = 19395152}, xselectionclear = {type = 0, serial = 6, send_event = 26728688, display = 0x8000010, window = 19395152, selection = 46912514881088, time = 140735698934256}, xselectionrequest = {type = 0, serial = 6, send_event = 26728688, display = 0x8000010, owner = 19395152, requestor = 46912514881088, selection = 140735698934256, target = 19395152, property = 71646624, time = 19395152}, xselection = {type = 0, serial = 6, send_event = 26728688, display = 0x8000010, requestor = 19395152, selection = 46912514881088, target = 140735698934256, property = 19395152, time = 71646624}, xcolormap = {type = 0, serial = 6, send_event = 26728688, display = 0x8000010, window = 19395152, colormap = 46912514881088, c_new = -1789421072, state = 32767}, xclient = {type = 0, serial = 6, send_event = 26728688, display = 0x8000010, window = 19395152, message_type = 46912514881088, format = -1789421072, data = {b = "P\362'\001\000\000\000\000\240=E\004\000\000\000\000P\362'\001", s = {-3504, 295, 0, 0, 15776, 1093, 0, 0, -3504, 295}, l = {19395152, 71646624, 19395152, 17801216, 46912504586063}}}, xmapping = {type = 0, serial = 6, send_event = 26728688, display = 0x8000010, window = 19395152, request = -1412893120, first_keycode = 10922, count = -1789421072}, xerror = {type = 0, display = 0x6warning: (Internal error: pc 0x6 in read in psymtab, but not in symtab.) >: >:, resourceid = 26728688, serial = 134217744, error_code = 80 'P', request_code = 242 '\362', minor_code = 39 '\''}, xkeymap = {type = 0, serial = 6, send_event = 26728688, display = 0x8000010, window = 19395152, key_vector = "@\366\310\253\252*\000\000\360\231W\225\377\177\000\000P\362'\001\000\000\000\000\240=E\004\000\000\000"}, xgeneric = {type = 0, serial = 6, send_event = 26728688, display = 0x8000010, extension = 19395152, evtype = 0}, xcookie = {type = 0, serial = 6, send_event = 26728688, display = 0x8000010, extension = 19395152, evtype = 0, cookie = 2882074176, data = 0x7fff955799f0}, pad = {0, 6, 26728688, 134217744, 19395152, 46912514881088, 140735698934256, 19395152, 71646624, 19395152, 17801216, 46912504586063, 140735698934168, 1, 140735698934336, 46912504094954, 140735698935200, 28743024, 19395152, 19395200, 28743024, 0, 140735698934416, 46912509525723}} >: d = <optimized out> >: pos = {xp = 55, yp = 11} >: modifiers = {i = 0} >:#26 0x00002aaaab2d1be9 in QApplication::x11ProcessEvent (this=0x7fff9557a410, event=0x7fff95579c60) at kernel/qapplication_x11.cpp:3639 >: alien = <optimized out> >: enter = <optimized out> >: leave = <optimized out> >: loopLevelCounter = {threadData = 0x10c9ee0} >: widget = 0x127f250 >: keywidget = <optimized out> >: grabbed = <optimized out> >: d = 0x10c9d30 >:#27 0x00002aaaab2ffbfa in x11EventSourceDispatch (s=s@entry=0x10ce830, callback=warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:0x0, user_data=warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:0x0) at kernel/qguieventdispatcher_glib.cpp:146 >: event = {type = 5, xany = {type = 5, serial = 2853, send_event = 0, display = 0x10fb700, window = 60817601}, xkey = {type = 5, serial = 2853, send_event = 0, display = 0x10fb700, window = 60817601, root = 764, subwindow = 0, time = 28211927, x = 55, y = 11, x_root = 811, y_root = 469, state = 272, keycode = 1, same_screen = 1}, xbutton = {type = 5, serial = 2853, send_event = 0, display = 0x10fb700, window = 60817601, root = 764, subwindow = 0, time = 28211927, x = 55, y = 11, x_root = 811, y_root = 469, state = 272, button = 1, same_screen = 1}, xmotion = {type = 5, serial = 2853, send_event = 0, display = 0x10fb700, window = 60817601, root = 764, subwindow = 0, time = 28211927, x = 55, y = 11, x_root = 811, y_root = 469, state = 272, is_hint = 1 '\001', same_screen = 1}, xcrossing = {type = 5, serial = 2853, send_event = 0, display = 0x10fb700, window = 60817601, root = 764, subwindow = 0, time = 28211927, x = 55, y = 11, x_root = 811, y_root = 469, mode = 272, detail = 1, same_screen = 1, focus = 0, state = 1}, xfocus = {type = 5, serial = 2853, send_event = 0, display = 0x10fb700, window = 60817601, mode = 764, detail = 0}, xexpose = {type = 5, serial = 2853, send_event = 0, display = 0x10fb700, window = 60817601, x = 764, y = 0, width = 0, height = 0, count = 28211927}, xgraphicsexpose = {type = 5, serial = 2853, send_event = 0, display = 0x10fb700, drawable = 60817601, x = 764, y = 0, width = 0, height = 0, count = 28211927, major_code = 0, minor_code = 55}, xnoexpose = {type = 5, serial = 2853, send_event = 0, display = 0x10fb700, drawable = 60817601, major_code = 764, minor_code = 0}, xvisibility = {type = 5, serial = 2853, send_event = 0, display = 0x10fb700, window = 60817601, state = 764}, xcreatewindow = {type = 5, serial = 2853, send_event = 0, display = 0x10fb700, parent = 60817601, window = 764, x = 0, y = 0, width = 28211927, height = 0, border_width = 55, override_redirect = 11}, xdestroywindow = {type = 5, serial = 2853, send_event = 0, display = 0x10fb700, event = 60817601, window = 764}, xunmap = {type = 5, serial = 2853, send_event = 0, display = 0x10fb700, event = 60817601, window = 764, from_configure = 0}, xmap = {type = 5, serial = 2853, send_event = 0, display = 0x10fb700, event = 60817601, window = 764, override_redirect = 0}, xmaprequest = {type = 5, serial = 2853, send_event = 0, display = 0x10fb700, parent = 60817601, window = 764}, xreparent = {type = 5, serial = 2853, send_event = 0, display = 0x10fb700, event = 60817601, window = 764, parent = 0, x = 28211927, y = 0, override_redirect = 55}, xconfigure = {type = 5, serial = 2853, send_event = 0, display = 0x10fb700, event = 60817601, window = 764, x = 0, y = 0, width = 28211927, height = 0, border_width = 55, above = 2014339662635, override_redirect = 272}, xgravity = {type = 5, serial = 2853, send_event = 0, display = 0x10fb700, event = 60817601, window = 764, x = 0, y = 0}, xresizerequest = {type = 5, serial = 2853, send_event = 0, display = 0x10fb700, window = 60817601, width = 764, height = 0}, xconfigurerequest = {type = 5, serial = 2853, send_event = 0, display = 0x10fb700, parent = 60817601, window = 764, x = 0, y = 0, width = 28211927, height = 0, border_width = 55, above = 2014339662635, detail = 272, value_mask = 1}, xcirculate = {type = 5, serial = 2853, send_event = 0, display = 0x10fb700, event = 60817601, window = 764, place = 0}, xcirculaterequest = {type = 5, serial = 2853, send_event = 0, display = 0x10fb700, parent = 60817601, window = 764, place = 0}, xproperty = {type = 5, serial = 2853, send_event = 0, display = 0x10fb700, window = 60817601, atom = 764, time = 0, state = 28211927}, xselectionclear = {type = 5, serial = 2853, send_event = 0, display = 0x10fb700, window = 60817601, selection = 764, time = 0}, xselectionrequest = {type = 5, serial = 2853, send_event = 0, display = 0x10fb700, owner = 60817601, requestor = 764, selection = 0, target = 28211927, property = 47244640311, time = 2014339662635}, xselection = {type = 5, serial = 2853, send_event = 0, display = 0x10fb700, requestor = 60817601, selection = 764, target = 0, property = 28211927, time = 47244640311}, xcolormap = {type = 5, serial = 2853, send_event = 0, display = 0x10fb700, window = 60817601, colormap = 764, c_new = 0, state = 0}, xclient = {type = 5, serial = 2853, send_event = 0, display = 0x10fb700, window = 60817601, message_type = 764, format = 0, data = {b = "\327z\256\001\000\000\000\000\067\000\000\000\v\000\000\000+\003\000", s = {31447, 430, 0, 0, 55, 0, 11, 0, 811, 0}, l = {28211927, 47244640311, 2014339662635, 4294967568, 1}}}, xmapping = {type = 5, serial = 2853, send_event = 0, display = 0x10fb700, window = 60817601, request = 764, first_keycode = 0, count = 0}, xerror = {type = 5, display = 0xb25, resourceid = 0, serial = 17807104, error_code = 193 '\301', request_code = 0 '\000', minor_code = 160 '\240'}, xkeymap = {type = 5, serial = 2853, send_event = 0, display = 0x10fb700, window = 60817601, key_vector = "\374\002", '\000' <repeats 14 times>"\327, z\256\001\000\000\000\000\067\000\000\000\v\000\000"}, xgeneric = {type = 5, serial = 2853, send_event = 0, display = 0x10fb700, extension = 60817601, evtype = 0}, xcookie = {type = 5, serial = 2853, send_event = 0, display = 0x10fb700, extension = 60817601, evtype = 0, cookie = 764, data = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:}, pad = {46909632806917, 2853, 0, 17807104, 60817601, 764, 0, 28211927, 47244640311, 2014339662635, 4294967568, 1, 1, 0, 4294967297, 0, 1, 0, 0, 1, -4294967296, 1, 0, 1}} >: source = 0x10ce830 >: marker = 2854 >:#28 0x00002aaaad48a5f2 in g_main_dispatch (context=0x10cd200) at gmain.c:2715 >: dispatch = 0x2aaaab2ffa20 <x11EventSourceDispatch(GSource*, GSourceFunc, gpointer)> >: was_in_call = 0 >: user_data = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >: >: callback = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >: >: cb_funcs = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >: >: cb_data = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >: >: current_source_link = {data = 0x10ce830, next = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:} >: need_destroy = <optimized out> >: source = 0x10ce830 >: current = 0x1272590 >: i = <optimized out> >:#29 g_main_context_dispatch (context=context@entry=0x10cd200) at gmain.c:3219 >:No locals. >:#30 0x00002aaaad48a998 in g_main_context_iterate (context=context@entry=0x10cd200, block=block@entry=1, dispatch=dispatch@entry=1, self=<optimized out>) at gmain.c:3290 >: max_priority = 2147483647 >: timeout = 5502 >: some_ready = 1 >: nfds = <optimized out> >: allocated_nfds = <optimized out> >: fds = 0x1feb550 >:#31 0x00002aaaad48aa4c in g_main_context_iteration (context=0x10cd200, may_block=1) at gmain.c:3351 >: retval = <optimized out> >:#32 0x00002aaaabe8c01e in QEventDispatcherGlib::processEvents (this=0x10cc0d0, flags=...) at kernel/qeventdispatcher_glib.cpp:426 >: d = 0x10cc0f0 >: canWait = <optimized out> >: savedFlags = {i = 0} >: result = false >:#33 0x00002aaaab2ff95e in QGuiEventDispatcherGlib::processEvents (this=<optimized out>, flags=...) at kernel/qguieventdispatcher_glib.cpp:204 >: d = 0x10cc0f0 >: saved_flags = {i = 0} >: returnValue = false >:#34 0x00002aaaabe5336f in QEventLoop::processEvents (this=this@entry=0x7fff9557a020, flags=...) at kernel/qeventloop.cpp:149 >: d = 0x1e074d0 >:#35 0x00002aaaabe53658 in QEventLoop::exec (this=0x7fff9557a020, flags=...) at kernel/qeventloop.cpp:204 >: d = 0x1e074d0 >: locker = {val = 17604648} >: app = 0x7fff9557a410 >:#36 0x00002aaaabe58dda in QCoreApplication::exec () at kernel/qcoreapplication.cpp:1218 >: threadData = 0x10c9ee0 >: eventLoop = {<QObject> = {_vptr.QObject = 0x2aaaabfc01d0 <vtable for QEventLoop+16>, static staticMetaObject = {d = {superdata = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, stringdata = 0x2aaaabf608e0 <qt_meta_stringdata_QObject> "QObject", data = 0x2aaaabf60980 <qt_meta_data_QObject>, extradata = 0x2aaaabfbd6e0 <QObject::staticMetaObjectExtraData>}}, static staticMetaObjectExtraData = {objects = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, static_metacall = 0x2aaaabe72750 <QObject::qt_static_metacall(QObject*, QMetaObject::Call, int, void**)>}, d_ptr = {d = 0x1e074d0}, static staticQtMetaObject = {d = {superdata = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, stringdata = 0x2aaaabf68ec0 <qt_meta_stringdata_Qt> "Qt", data = 0x2aaaabf6c7e0 <qt_meta_data_Qt>, extradata = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:}}}, static staticMetaObject = {d = {superdata = 0x4ae6e0 <QObject::staticMetaObject>, stringdata = 0x2aaaabf72ac0 <qt_meta_stringdata_QEventLoop> "QEventLoop", data = 0x2aaaabf72ae0 <qt_meta_data_QEventLoop>, extradata = 0x2aaaabfc0260 <QEventLoop::staticMetaObjectExtraData>}}, static staticMetaObjectExtraData = {objects = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, static_metacall = 0x2aaaabec51b0 <QEventLoop::qt_static_metacall(QObject*, QMetaObject::Call, int, void**)>}} >: returnCode = <optimized out> >:#37 0x000000000045593d in main (argc=1, argv=<optimized out>) at /var/tmp/portage/sci-chemistry/avogadro-1.1.0/work/avogadro-1.1.0/avogadro/src/main.cpp:251 >: translationCode = {static null = {<No data fields>}, static shared_null = {ref = {_q_value = 1}, alloc = 0, size = 0, data = 0x4ae3ba <QString::shared_null+26>, clean = 0, simpletext = 0, righttoleft = 0, asciiCache = 0, capacity = 0, reserved = 0, array = {0}}, static shared_empty = {ref = {_q_value = 5429}, alloc = 0, size = 0, data = 0x2aaaabfb9efa <QString::shared_empty+26>, clean = 0, simpletext = 0, righttoleft = 0, asciiCache = 0, capacity = 0, reserved = 0, array = {0}}, d = 0x1277e40, static codecForCStrings = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:} >: tryLoadingQtTranslations = <optimized out> >: qtTranslator = {<QObject> = {_vptr.QObject = 0x2aaaabfc0650 <vtable for QTranslator+16>, static staticMetaObject = {d = {superdata = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, stringdata = 0x2aaaabf608e0 <qt_meta_stringdata_QObject> "QObject", data = 0x2aaaabf60980 <qt_meta_data_QObject>, extradata = 0x2aaaabfbd6e0 <QObject::staticMetaObjectExtraData>}}, static staticMetaObjectExtraData = {objects = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, static_metacall = 0x2aaaabe72750 <QObject::qt_static_metacall(QObject*, QMetaObject::Call, int, void**)>}, d_ptr = {d = 0x1275760}, static staticQtMetaObject = {d = {superdata = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, stringdata = 0x2aaaabf68ec0 <qt_meta_stringdata_Qt> "Qt", data = 0x2aaaabf6c7e0 <qt_meta_data_Qt>, extradata = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:}}}, static staticMetaObject = {d = {superdata = 0x4ae6e0 <QObject::staticMetaObject>, stringdata = 0x2aaaabf73f80 <qt_meta_stringdata_QTranslator> "QTranslator", data = 0x2aaaabf73fa0 <qt_meta_data_QTranslator>, extradata = 0x2aaaabfc06e0 <QTranslator::staticMetaObjectExtraData>}}, static staticMetaObjectExtraData = {objects = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, static_metacall = 0x2aaaabec5980 <QTranslator::qt_static_metacall(QObject*, QMetaObject::Call, int, void**)>}} >: avoTranslator = {<QObject> = {_vptr.QObject = 0x2aaaabfc0650 <vtable for QTranslator+16>, static staticMetaObject = {d = {superdata = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, stringdata = 0x2aaaabf608e0 <qt_meta_stringdata_QObject> "QObject", data = 0x2aaaabf60980 <qt_meta_data_QObject>, extradata = 0x2aaaabfbd6e0 <QObject::staticMetaObjectExtraData>}}, static staticMetaObjectExtraData = {objects = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, static_metacall = 0x2aaaabe72750 <QObject::qt_static_metacall(QObject*, QMetaObject::Call, int, void**)>}, d_ptr = {d = 0x127d000}, static staticQtMetaObject = {d = {superdata = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, stringdata = 0x2aaaabf68ec0 <qt_meta_stringdata_Qt> "Qt", data = 0x2aaaabf6c7e0 <qt_meta_data_Qt>, extradata = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:}}}, static staticMetaObject = {d = {superdata = 0x4ae6e0 <QObject::staticMetaObject>, stringdata = 0x2aaaabf73f80 <qt_meta_stringdata_QTranslator> "QTranslator", data = 0x2aaaabf73fa0 <qt_meta_data_QTranslator>, extradata = 0x2aaaabfc06e0 <QTranslator::staticMetaObjectExtraData>}}, static staticMetaObjectExtraData = {objects = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, static_metacall = 0x2aaaabec5980 <QTranslator::qt_static_metacall(QObject*, QMetaObject::Call, int, void**)>}} >: arguments = {<QList<QString>> = {{p = {static shared_null = {ref = {_q_value = 1}, alloc = 0, begin = 0, end = 0, sharable = 1, array = {0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:}}, d = 0x1274e50}, d = 0x1274e50}}, <No data fields>} >: window = 0x1276eb0 >: app = {<QApplication> = {<QCoreApplication> = {<QObject> = {_vptr.QObject = 0x474a90 <vtable for Avogadro::Application+16>, static staticMetaObject = {d = {superdata = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, stringdata = 0x2aaaabf608e0 <qt_meta_stringdata_QObject> "QObject", data = 0x2aaaabf60980 <qt_meta_data_QObject>, extradata = 0x2aaaabfbd6e0 <QObject::staticMetaObjectExtraData>}}, static staticMetaObjectExtraData = {objects = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, static_metacall = 0x2aaaabe72750 <QObject::qt_static_metacall(QObject*, QMetaObject::Call, int, void**)>}, d_ptr = {d = 0x10c9d30}, static staticQtMetaObject = {d = {superdata = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, stringdata = 0x2aaaabf68ec0 <qt_meta_stringdata_Qt> "Qt", data = 0x2aaaabf6c7e0 <qt_meta_data_Qt>, extradata = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:}}}, static staticMetaObject = {d = {superdata = 0x4ae6e0 <QObject::staticMetaObject>, stringdata = 0x2aaaabf72b60 <qt_meta_stringdata_QCoreApplication> "QCoreApplication", data = 0x2aaaabf72c00 <qt_meta_data_QCoreApplication>, extradata = 0x2aaaabfc0340 <QCoreApplication::staticMetaObjectExtraData>}}, static staticMetaObjectExtraData = {objects = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, static_metacall = 0x2aaaabec5280 <QCoreApplication::qt_static_metacall(QObject*, QMetaObject::Call, int, void**)>}, static self = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:}, static staticMetaObject = {d = {superdata = 0x2aaaabfc0320 <QCoreApplication::staticMetaObject>, stringdata = 0x2aaaabaa0e20 <qt_meta_stringdata_QApplication> "QApplication", data = 0x2aaaabaa1060 <qt_meta_data_QApplication>, extradata = 0x2aaaabc4f2c0 <QApplication::staticMetaObjectExtraData>}}, static staticMetaObjectExtraData = {objects = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, static_metacall = 0x2aaaab245de0 <QApplication::qt_static_metacall(QObject*, QMetaObject::Call, int, void**)>}}, static staticMetaObject = {d = {superdata = 0x4ae860 <QApplication::staticMetaObject>, stringdata = 0x474b50 <qt_meta_stringdata_Avogadro__Application> "Avogadro::Application", data = 0x474b80 <qt_meta_data_Avogadro__Application>, extradata = 0x474b40 <Avogadro::Application::staticMetaObjectExtraData>}}, static staticMetaObjectExtraData = {objects = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:, static_metacall = 0x44da30 <Avogadro::Application::qt_static_metacall(QObject*, QMetaObject::Call, int, void**)>}} >: versionInfo = {static null = {<No data fields>}, static shared_null = {ref = {_q_value = 1}, alloc = 0, size = 0, data = 0x4ae3ba <QString::shared_null+26>, clean = 0, simpletext = 0, righttoleft = 0, asciiCache = 0, capacity = 0, reserved = 0, array = {0}}, static shared_empty = {ref = {_q_value = 5429}, alloc = 0, size = 0, data = 0x2aaaabfb9efa <QString::shared_empty+26>, clean = 0, simpletext = 0, righttoleft = 0, asciiCache = 0, capacity = 0, reserved = 0, array = {0}}, d = 0x1276ce0, static codecForCStrings = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:} >: translationPaths = {<QList<QString>> = {{p = {static shared_null = {ref = {_q_value = 1}, alloc = 0, begin = 0, end = 0, sharable = 1, array = {0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:}}, d = 0x1170380}, d = 0x1170380}}, <No data fields>} >: qtFilename = {static null = {<No data fields>}, static shared_null = {ref = {_q_value = 1}, alloc = 0, size = 0, data = 0x4ae3ba <QString::shared_null+26>, clean = 0, simpletext = 0, righttoleft = 0, asciiCache = 0, capacity = 0, reserved = 0, array = {0}}, static shared_empty = {ref = {_q_value = 5429}, alloc = 0, size = 0, data = 0x2aaaabfb9efa <QString::shared_empty+26>, clean = 0, simpletext = 0, righttoleft = 0, asciiCache = 0, capacity = 0, reserved = 0, array = {0}}, d = 0x127f070, static codecForCStrings = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:} >: libTranslator = {o = 0x1273660} >: defFormat = {d = 0x1274e00} >: avoFilename = {static null = {<No data fields>}, static shared_null = {ref = {_q_value = 1}, alloc = 0, size = 0, data = 0x4ae3ba <QString::shared_null+26>, clean = 0, simpletext = 0, righttoleft = 0, asciiCache = 0, capacity = 0, reserved = 0, array = {0}}, static shared_empty = {ref = {_q_value = 5429}, alloc = 0, size = 0, data = 0x2aaaabfb9efa <QString::shared_empty+26>, clean = 0, simpletext = 0, righttoleft = 0, asciiCache = 0, capacity = 0, reserved = 0, array = {0}}, d = 0x1276bd0, static codecForCStrings = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >:} >:From To Syms Read Shared Object Library >: No linux-vdso.so.1 >:0x00002aaaaacee1d0 0x00002aaaaae1c270 Yes /lib64/libc.so.6 >:0x00002aaaaab41470 0x00002aaaaabde554 Yes /usr/lib64/qt4/libQtOpenGL.so.4 >:0x00002aaaab22f8a0 0x00002aaaaba1e570 Yes /usr/lib64/qt4/libQtGui.so.4 >:0x00002aaaabcf3d10 0x00002aaaabec6814 Yes /usr/lib64/qt4/libQtCore.so.4 >:0x00002aaaac036ec0 0x00002aaaac1ab7f0 Yes /usr/lib64/libopenbabel.so.4 >:0x00002aaaac2589e0 0x00002aaaac2ecd90 Yes /usr/lib64/libavogadro.so.1 >:0x00002aaaac343bc0 0x00002aaaac3d1db4 Yes /usr/lib64/libX11.so.6 >:0x00002aaaac4c96e0 0x00002aaaac52f40b Yes /usr/lib/gcc/x86_64-pc-linux-gnu/4.7.2/libstdc++.so.6 >:0x00002aaaac776570 0x00002aaaac7d4988 Yes /lib64/libm.so.6 >:0x00002aaaaca65ed0 0x00002aaaaca753bc Yes /usr/lib/gcc/x86_64-pc-linux-gnu/4.7.2/libgcc_s.so.1 >:0x00002aaaaaaaba80 0x00002aaaaaac4f19 Yes /lib64/ld-linux-x86-64.so.2 >:0x00002aaaacc86070 0x00002aaaaccf2c48 Yes /usr/lib64/libfreetype.so.6 >:0x00002aaaacf1bee0 0x00002aaaacf1c9b0 Yes /lib64/libdl.so.2 >:0x00002aaaad171a30 0x00002aaaad1d5518 Yes (*) /usr/lib64/libGL.so.1 >:0x00002aaaaac37a50 0x00002aaaaac3e180 Yes /usr/lib64/libXrender.so.1 >:0x00002aaaad45bf20 0x00002aaaad4f2a4c Yes /usr/lib64/libglib-2.0.so.0 >:0x00002aaaad76b810 0x00002aaaad777184 Yes /lib64/libpthread.so.0 >:0x00002aaaaac46390 0x00002aaaaac646ac Yes /usr/lib64/libpng15.so.15 >:0x00002aaaaac720c0 0x00002aaaaac815c8 Yes /lib64/libz.so.1 >:0x00002aaaad98d360 0x00002aaaad9bb654 Yes /usr/lib64/libgobject-2.0.so.0 >:0x00002aaaaac89ba0 0x00002aaaaac8dd30 Yes /usr/lib64/libSM.so.6 >:0x00002aaaaac95eb0 0x00002aaaaaca392c Yes /usr/lib64/libICE.so.6 >:0x00002aaaaacaf0a0 0x00002aaaaacba604 Yes /usr/lib64/libXi.so.6 >:0x00002aaaaacbfb20 0x00002aaaaacc6138 Yes /usr/lib64/libXrandr.so.2 >:0x00002aaaadbd24d0 0x00002aaaadbd5248 Yes /usr/lib64/libXfixes.so.3 >:0x00002aaaadbd99f0 0x00002aaaadbde6e0 Yes /usr/lib64/libXcursor.so.1 >:0x00002aaaadbe1ae0 0x00002aaaadbe24b0 Yes /usr/lib64/libXinerama.so.1 >:0x00002aaaadbea160 0x00002aaaadc06be4 Yes /usr/lib64/libfontconfig.so.1 >:0x00002aaaadc22670 0x00002aaaadc2dfd0 Yes /usr/lib64/libXext.so.6 >:0x00002aaaadc342e0 0x00002aaaadc374ac Yes /lib64/librt.so.1 >:0x00002aaaade3e030 0x00002aaaade453c0 Yes /usr/lib/gcc/x86_64-pc-linux-gnu/4.7.2/libgomp.so.1 >:0x00002aaaae04da40 0x00002aaaae0ab338 Yes /usr/lib64/libGLU.so.1 >:0x00002aaaae103560 0x00002aaaae12f744 Yes /usr/lib64/libGLEW.so.1.9 >:0x00002aaaae155a50 0x00002aaaae161f88 Yes /usr/lib64/libxcb.so.1 >:0x00002aaaae16c690 0x00002aaaae179f50 Yes /lib64/libbz2.so.1 >:0x00002aaaae17e960 0x00002aaaae180033 Yes (*) /usr/lib64/libnvidia-tls.so.313.18 >:0x00002aaaaecf3090 0x00002aaaafac7638 Yes (*) /usr/lib64/libnvidia-glcore.so.313.18 >:0x00002aaab08857b0 0x00002aaab0889fe8 Yes /usr/lib64/libffi.so.6 >:0x00002aaab088e450 0x00002aaab088fa48 Yes /lib64/libuuid.so.1 >:0x00002aaab0895d40 0x00002aaab08af41c Yes /usr/lib64/libexpat.so.1 >:0x00002aaab08bde00 0x00002aaab08beb20 Yes /usr/lib64/libXau.so.6 >:0x00002aaab08c12c0 0x00002aaab08c2bdc Yes /usr/lib64/libXdmcp.so.6 >:0x00002aaab0c816e0 0x00002aaab0c8313c Yes /usr/lib64/gconv/UTF-16.so >:0x00002aaab0f66580 0x00002aaab107d098 Yes /usr/lib64/libicui18n.so.50 >:0x00002aaab1128e60 0x00002aaab11e36b4 Yes /usr/lib64/libicuuc.so.50 >:0x00002aaab1254540 0x00002aaab1254620 Yes (*) /usr/lib64/libicudata.so.50 >:0x00002aaab27c1f60 0x00002aaab27d9a48 Yes /usr/lib64/libgconf-2.so.4 >:0x00002aaab27e8150 0x00002aaab27e9098 Yes /usr/lib64/libgmodule-2.0.so.0 >:0x00002aaab29f5550 0x00002aaab2a077c4 Yes /usr/lib64/libdbus-glib-1.so.2 >:0x00002aaab2a19a20 0x00002aaab2a3e8b4 Yes /usr/lib64/libdbus-1.so.3 >:0x00002aaab2a7fc40 0x00002aaab2b4133c Yes /usr/lib64/libgio-2.0.so.0 >:0x00002aaab2da8ae0 0x00002aaab2db4d74 Yes /lib64/libresolv.so.2 >:0x00002aaab3071560 0x00002aaab32cad98 Yes /usr/lib64/libgtk-x11-2.0.so.0 >:0x00002aaab3452b50 0x00002aaab34a9e9c Yes /usr/lib64/libgdk-x11-2.0.so.0 >:0x00002aaab34ea780 0x00002aaab34efb18 Yes /usr/lib64/libpangocairo-1.0.so.0 >:0x00002aaab36fd3d0 0x00002aaab3709c44 Yes /usr/lib64/libatk-1.0.so.0 >:0x00002aaab3929450 0x00002aaab39f8f8c Yes /usr/lib64/libcairo.so.2 >:0x00002aaab27796e0 0x00002aaab278b480 Yes /usr/lib64/libgdk_pixbuf-2.0.so.0 >:0x00002aaab3a3d9d0 0x00002aaab3a45af0 Yes /usr/lib64/libpangoft2-1.0.so.0 >:0x00002aaab3c587d0 0x00002aaab3c7815c Yes /usr/lib64/libpango-1.0.so.0 >:0x00002aaab3e96c70 0x00002aaab3e97784 Yes /usr/lib64/libXcomposite.so.1 >:0x00002aaab4099bf0 0x00002aaab409a60c Yes /usr/lib64/libXdamage.so.1 >:0x00002aaab42a6480 0x00002aaab43341cc Yes /usr/lib64/libpixman-1.so.0 >:0x00002aaab2799550 0x00002aaab27a94fc Yes /usr/lib64/libEGL.so.1 >:0x00002aaab27b2ac0 0x00002aaab27b31c4 Yes /usr/lib64/libxcb-shm.so.0 >:0x00002aaab434f540 0x00002aaab43523d4 Yes /usr/lib64/libxcb-render.so.0 >:0x00002aaab435da60 0x00002aaab43b583c Yes /usr/lib64/libharfbuzz.so.0 >:0x00002aaab27b5580 0x00002aaab27b567c Yes /usr/lib64/libX11-xcb.so.1 >:0x00002aaab43ee860 0x00002aaab43ef668 Yes /usr/lib64/libxcb-dri2.so.0 >:0x00002aaab43f3540 0x00002aaab43f4ea4 Yes /usr/lib64/libxcb-xfixes.so.0 >:0x00002aaab43fb6b0 0x00002aaab4403fa0 Yes /lib64/libudev.so.1 >:0x00002aaab440e1a0 0x00002aaab4413194 Yes /usr/lib64/libdrm.so.2 >:0x00002aaab4419710 0x00002aaab442cfd8 Yes /usr/lib64/libgraphite2.so.3 >:0x00002aaab4447480 0x00002aaab445b1e8 Yes /usr/lib64/libicule.so.50 >:0x00002aaab4475d60 0x00002aaab4476bea Yes /lib64/libsystemd-daemon.so.0 >:0x00002aaab449bef0 0x00002aaab44e3ce0 Yes /usr/lib64/libgnomeui-2.so.0 >:0x00002aaab4537db0 0x00002aaab456f46c Yes /usr/lib64/libbonoboui-2.so.0 >:0x00002aaab4598cb0 0x00002aaab45b8300 Yes /usr/lib64/libgnomecanvas-2.so.0 >:0x00002aaab45cb1b0 0x00002aaab45d50e8 Yes /usr/lib64/libgnome-2.so.0 >:0x00002aaab45defc0 0x00002aaab45f1704 Yes /usr/lib64/libart_lgpl_2.so.2 >:0x00002aaab460daa0 0x00002aaab463f98c Yes /usr/lib64/libgnomevfs-2.so.0 >:0x00002aaab4663a00 0x00002aaab4675884 Yes /usr/lib64/libgnome-keyring.so.0 >:0x00002aaab48aa150 0x00002aaab48d4408 Yes /usr/lib64/libbonobo-2.so.0 >:0x00002aaab4904440 0x00002aaab490c4dc Yes /usr/lib64/libbonobo-activation.so.4 >:0x00002aaab493cdb0 0x00002aaab495f944 Yes /usr/lib64/libORBit-2.so.0 >:0x00002aaab49b4920 0x00002aaab4aa500c Yes /usr/lib64/libxml2.so.2 >:0x00002aaab4af5470 0x00002aaab4afc63c Yes /usr/lib64/libpopt.so.0 >:0x00002aaab4b01920 0x00002aaab4b04de0 Yes /usr/lib64/libgailutil.so.18 >:0x00002aaab4b076a0 0x00002aaab4b077fc Yes /usr/lib64/libgthread-2.0.so.0 >:0x00002aaab4d0bf90 0x00002aaab4d1418c Yes /usr/lib64/libcanberra.so.0 >:0x00002aaab4f2f290 0x00002aaab4f6ad6c Yes /usr/lib64/libssl.so.1.0.0 >:0x00002aaab4f83f20 0x00002aaab4f84744 Yes /lib64/libutil.so.1 >:0x00002aaab518e000 0x00002aaab51dfd48 Yes /usr/lib64/libgcrypt.so.11 >:0x00002aaab520b3e0 0x00002aaab520bd78 Yes /usr/lib64/libORBitCosNaming-2.so.0 >:0x00002aaab5210f90 0x00002aaab521535c Yes /usr/lib64/libvorbisfile.so.3 >:0x00002aaab5219400 0x00002aaab521d7c8 Yes /usr/lib64/libltdl.so.7 >:0x00002aaab5286280 0x00002aaab5377988 Yes /usr/lib64/libcrypto.so.1.0.0 >:0x00002aaab53fa970 0x00002aaab53faee8 Yes /usr/lib64/libgpg-error.so.0 >:0x00002aaab54017f0 0x00002aaab54189d4 Yes /usr/lib64/libvorbis.so.0 >:0x00002aaab542c9e0 0x00002aaab542f118 Yes /usr/lib64/libogg.so.0 >:0x00002aaab5433470 0x00002aaab543819c Yes /lib64/libnss_compat.so.2 >:0x00002aaab563f170 0x00002aaab564a7d4 Yes /lib64/libnsl.so.1 >:0x00002aaab5854210 0x00002aaab585a358 Yes /lib64/libnss_nis.so.2 >:0x00002aaab5a5f2d0 0x00002aaab5a6694c Yes /lib64/libnss_files.so.2 >:0x00002aaab2fbe4d0 0x00002aaab2fc3ad4 Yes /usr/lib64/gtk-2.0/2.10.0/engines/libpixmap.so >:0x00002aaab5c6f8e0 0x00002aaab5c96fe0 Yes /usr/lib64/gtk-2.0/2.10.0/engines/libmurrine.so >:0x00002aaab5eada00 0x00002aaab5ed686c Yes /usr/lib64/gtk-2.0/modules/libgail.so >:0x00002aaab5eec850 0x00002aaab5eec998 Yes /usr/lib64/gtk-2.0/modules/libatk-bridge.so >:0x00002aaab6142bd0 0x00002aaab6155714 Yes /usr/lib64/libatk-bridge-2.0.so.0 >:0x00002aaab636fe90 0x00002aaab637e8c4 Yes /usr/lib64/libatspi.so.0 >:0x00002aaab658b0a0 0x00002aaab658d0e0 Yes /usr/lib64/gtk-2.0/modules/libcanberra-gtk-module.so >:0x00002aaab6790c70 0x00002aaab67921d0 Yes /usr/lib64/libcanberra-gtk.so.0 >:0x00002aaab6995640 0x00002aaab6995f3c Yes /usr/lib64/pango/1.8.0/modules/pango-basic-fc.so >:0x00002aaab2ff2610 0x00002aaab2ff5fe4 Yes /usr/lib64/qt4/plugins/imageformats/libqgif.so >:0x00002aaab2ffaa50 0x00002aaab2ffdefc Yes /usr/lib64/qt4/plugins/imageformats/libqico.so >:0x00002aaab60f1370 0x00002aaab60f40f4 Yes /usr/lib64/qt4/plugins/imageformats/libqjpeg.so >:0x00002aaab6c38ed0 0x00002aaab6c6e880 Yes /usr/lib64/libjpeg.so.8 >:0x00002aaab3002df0 0x00002aaab3004924 Yes /usr/lib64/qt4/plugins/imageformats/libqmng.so >:0x00002aaab6ca1f10 0x00002aaab6ce98c4 Yes /usr/lib64/libmng.so.1 >:0x00002aaab60f8c20 0x00002aaab60fa3d8 Yes /usr/lib64/qt4/plugins/imageformats/libqsvg.so >:0x00002aaab6d12140 0x00002aaab6d4994c Yes /usr/lib64/qt4/libQtSvg.so.4 >:0x00002aaab60fedd0 0x00002aaab6102514 Yes /usr/lib64/qt4/plugins/imageformats/libqtiff.so >:0x00002aaab6d63340 0x00002aaab6da0854 Yes /usr/lib64/libtiff.so.5 >:0x00002aaab6107980 0x00002aaab611cee0 Yes /lib64/liblzma.so.5 >:0x00002aaab61352c0 0x00002aaab6135ad0 Yes /usr/lib64/avogadro/1_1/colors/atomindexcolor.so >:0x00002aaab6bf4330 0x00002aaab6bf4ac0 Yes /usr/lib64/avogadro/1_1/colors/chargecolor.so >:0x00002aaab6bf99e0 0x00002aaab6bfa6d0 Yes /usr/lib64/avogadro/1_1/colors/customcolor.so >:0x00002aaab6bff390 0x00002aaab6bffc50 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>:0x00002aaab7cd8e90 0x00002aaab7ce3714 Yes /usr/lib64/openbabel/2.3.2/gaussformat.so >:0x00002aaab7cf2500 0x00002aaab7cf4394 Yes /usr/lib64/openbabel/2.3.2/fhiaimsformat.so >:0x00002aaab7d00c70 0x00002aaab7d0e0c4 Yes /usr/lib64/openbabel/2.3.2/mdlformat.so >:0x00002aaab7d1a1a0 0x00002aaab7d22c28 Yes /usr/lib64/openbabel/2.3.2/plugin_fingerprints.so >:0x00002aaab7d29390 0x00002aaab7d2d0d4 Yes /usr/lib64/openbabel/2.3.2/gulpformat.so >:0x00002aaab7d33080 0x00002aaab7d35138 Yes /usr/lib64/openbabel/2.3.2/chem3dformat.so >:0x00002aaab7d3a410 0x00002aaab7d3c4a8 Yes /usr/lib64/openbabel/2.3.2/alchemyformat.so >:0x00002aaab7d40db0 0x00002aaab7d42654 Yes /usr/lib64/openbabel/2.3.2/chemtoolformat.so >:0x00002aaab7d46ea0 0x00002aaab7d482c4 Yes /usr/lib64/openbabel/2.3.2/molreport.so >:0x00002aaab7d4ccf0 0x00002aaab7d4e4d8 Yes /usr/lib64/openbabel/2.3.2/outformat.so >:0x00002aaabcf116e0 0x00002aaabcf15b5c Yes /usr/lib64/gio/modules/libdconfsettings.so >:0x00002aaabd124f00 0x00002aaabd140568 Yes /usr/lib64/gio/modules/libgvfsdbus.so >:0x00002aaabd1a87e0 0x00002aaabd1c1b98 Yes /usr/lib64/libgvfscommon.so.0 >:0x00002aaabd1524d0 0x00002aaabd15f438 Yes /usr/lib64/gio/modules/libgioremote-volume-monitor.so >:0x00002aaac9e20770 0x00002aaac9e261b8 Yes /usr/lib64/gnome-vfs-2.0/modules/libfile.so >:0x00002aaac9e75ed0 0x00002aaac9e79fe4 Yes /lib64/libacl.so.1 >:0x00002aaac9e7e320 0x00002aaac9e804bc Yes /lib64/libattr.so.1 >:(*): Shared library is missing debugging information. >:$1 = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >: >:$2 = 0x0warning: (Internal error: pc 0x0 in read in psymtab, but not in symtab.) >: >: >:rax 0x0 0 >:rbx 0x0 0 >:rcx 0x0 0 >:rdx 0x10a7800 17463296 >:rsi 0x7fff9556fb20 140735698893600 >:rdi 0x0 0 >:rbp 0x7fff9556fe90 0x7fff9556fe90 >:rsp 0x7fff9556fb18 0x7fff9556fb18 >:r8 0x7fff9556fa50 140735698893392 >:r9 0x7fff9556fa60 140735698893408 >:r10 0xfffffc00 4294966272 >:r11 0x2aaaaad4bc20 46912498875424 >:r12 0x7fff9556fbf0 140735698893808 >:r13 0x7fff95578b10 140735698930448 >:r14 0x0 0 >:r15 0x2e8b350 48804688 >:rip 0x2aaaac03f2c0 0x2aaaac03f2c0 <OpenBabel::OBAtom::BeginBond(__gnu_cxx::__normal_iterator<OpenBabel::OBBond**, std::vector<OpenBabel::OBBond*, std::allocator<OpenBabel::OBBond*> > >&)> >:eflags 0x10202 [ IF RF ] >:cs 0x33 51 >:ss 0x2b 43 >:ds 0x0 0 >:es 0x0 0 >:fs 0x0 0 >:gs 0x0 0 >:Dump of assembler code for function OpenBabel::OBAtom::BeginBond(__gnu_cxx::__normal_iterator<OpenBabel::OBBond**, std::vector<OpenBabel::OBBond*, std::allocator<OpenBabel::OBBond*> > >&): >:=> 0x00002aaaac03f2c0 <+0>: mov 0x40(%rdi),%rax >: 0x00002aaaac03f2c4 <+4>: mov %rax,(%rsi) >: 0x00002aaaac03f2c7 <+7>: cmp 0x48(%rdi),%rax >: 0x00002aaaac03f2cb <+11>: je 0x2aaaac03f2d8 <OpenBabel::OBAtom::BeginBond(__gnu_cxx::__normal_iterator<OpenBabel::OBBond**, std::vector<OpenBabel::OBBond*, std::allocator<OpenBabel::OBBond*> > >&)+24> >: 0x00002aaaac03f2cd <+13>: mov (%rax),%rax >: 0x00002aaaac03f2d0 <+16>: retq >: 0x00002aaaac03f2d1 <+17>: nopl 0x0(%rax) >: 0x00002aaaac03f2d8 <+24>: xor %eax,%eax >: 0x00002aaaac03f2da <+26>: retq >:End of assembler dump. > >cgroup: >:12:bfqio:/ >:11:hugetlb:/ >:10:perf_event:/ >:9:blkio:/ >:8:net_cls:/ >:7:freezer:/ >:6:devices:/ >:5:memory:/ >:4:cpuacct:/ >:3:cpu:/ >:2:cpuset:/ >:1:name=openrc:/xdm > >environ: >:CCP4I_TCLTK=/usr/bin >:CNS_HELPLIB=/usr/share/cns/helplib >:MANPATH=/etc/java-config-2/current-system-vm/man:/usr/local/share/man:/usr/share/man:/usr/share/gcc-data/x86_64-pc-linux-gnu/4.7.2/man:/usr/share/binutils-data/x86_64-pc-linux-gnu/2.23.1/man:/etc/java-config-2/current-system-vm/man/:/opt/nmrpipe/man >:VTK_DIR=/usr/lib64/vtk-5.10 >:PDBH_LIST=/opt/nmrpipe/pdb/pdbH.list >:SSH_AGENT_PID=26868 >:flex_wARP_warpbin=/opt/arp-warp-bin/bin/bin-x86_64-Linux >:NCBI=/etc/ncbi >:LC_MONETARY=en_GB.utf8 >:CHTML=/usr/html >:XIA2CORE_ROOT=/usr/share/ccp4/XIAROOT/xia2core-0.3.4.0 >:CONCOORDLIB=/opt/concoord/lib >:CNS_CONFDB=/usr/share/cns/libraries/confdb >:GPG_AGENT_INFO=/local/home/justin/.cache/keyring-vzMSVP/gpg:0:1 >:INTEL_LICENSE_FILE=/opt/intel/composerxe-2013_update2.2.146/licenses:/opt/intel/license >:MOLMOLDEV=Motif/X11 >:CNS_DATA=/usr/share/cns >:TERM=rxvt-unicode-256color >:SHELL=/bin/bash >:XDG_MENU_PREFIX=gnome- >:NMR_AUTOSWAP=1 >:HISTSIZE=10000 >:flex_wARP_python=/usr/bin/python >:XDG_SESSION_COOKIE=32343aa7f478cca681af04d900002871-1361515910.573406-2034972988 >:CG_INC_PATH=/opt/nvidia-cg-toolkit/include >:VBOX_APP_HOME=/usr/lib64/virtualbox >:PGPLOT_FONT=/usr/lib64/pgplot/grfont.dat >:COOT_REFMAC_LIB_DIR=/usr/share/ccp4/ >:WINDOWID=23069523 >:LC_NUMERIC=en_GB.utf8 >:XIA2_ROOT=/usr/share/ccp4/XIAROOT/xia2-0.3.4.0 >:GNOME_KEYRING_CONTROL=/local/home/justin/.cache/keyring-vzMSVP >:NMRCHECK=ALL >:PUBLIC_FONT84=/usr/lib64/font84.dat >:CCP4=/usr >:MARSHOME=/opt/mars >:prodir=/usr/lib64/procheck/ >:DYNAMO_PARAMS=/opt/nmrpipe/dynamo/params >:DC_DIR=/opt/nmrpipe/DC >:ANT_HOME=/usr/share/ant >:ARIA2=//usr/lib64/python2.7/site-packages/aria >:MDD_NMR=/usr/local/mddnmr >:flex_wARP_bin=/opt/arp-warp-bin/byte-code/python-2.7 >:CLIB=/usr/lib64 >:HISTFILESIZE=10000 >:USER=justin >:SYMINFO=/usr/share/ccp4/data/syminfo.lib >:CNS_DOC=/usr/share/doc/cns-1.2.1-r7 >:LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=01;05;37;41:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.pdf=00;32:*.ps=00;32:*.txt=00;32:*.patch=00;32:*.diff=00;32:*.log=00;32:*.tex=00;32:*.doc=00;32:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36: >:CCP4_LIB=/usr/lib64 >:DESKTOP_AUTOSTART_ID=10eb924340d56a018613615159113949800000268150012 >:PRELINK_PATH_MASK=/usr/lib64/klibc:/usr/lib64/libfreebl3.so:/usr/lib64/libnssdbm3.so:/usr/lib64/libsoftokn3.so:/opt/bin/skype >:IMOSFLM_VERSION=1.0.7 >:CEXAM=/usr/share/doc/examples >:CCACHE_DIR=/local/home/ccache >:GUILE_LOAD_PATH=/usr/share/guile/1.8 >:CCP4_BIN=/usr/libexec/ccp4/bin >:CNS_XTALMODULE=/usr/share/cns/modules/xtal >:HARVESTHOME=/local/home/justin >:SSH_AUTH_SOCK=/local/home/justin/.cache/keyring-vzMSVP/ssh >:_POSIX2_VERSION=199209 >:CCP4I_HELP=/usr/lib64/ccp4/ccp4i/help >:RASMOLPATH=/usr/x-windows/RasMol >:CCP4I_TOP=/usr/lib64/ccp4/ccp4i >:PROMEGA_DIR=/opt/nmrpipe/promega >:'MAKEOPTS=V=1 -j12 -l12' >:SESSION_MANAGER=local/paul.ics.kfa-juelich.de:@/tmp/.ICE-unix/26815,unix/paul.ics.kfa-juelich.de:/tmp/.ICE-unix/26815 >:USERNAME=just'' >:'CONFIG_PROTECT_MASK=/etc/gentoo-release /etc/sandbox.d /etc/fonts/fonts.conf /etc/gconf /etc/terminfo /etc/dconf /etc/ca-certificates.conf /etc/texmf/web2c /etc/texmf/language.dat.d /etc/texmf/language.def.d /etc/texmf/updmap.d /etc/revdep-rebuild' >:SPARTA_DIR=/opt/nmrpipe/sparta >:DYNAMO_DIR=/opt/nmrpipe/dynamo >:CNS_LIB=/usr/share/cns/libraries >:NMRBIN=/opt/nmrpipe/bin >:FLTK_DOCDIR=/usr/share/doc/fltk-1.3.2/html >:CDOC=/usr/share/doc >:XDG_CONFIG_DIRS=/etc/xdg >:PDB_EXTRACT_ROOT=/usr/ >:CNS_TOPPAR=/usr/share/cns/libraries/toppar >:NLSPATH=/opt/intel/composerxe-2013_update2.2.146/lib/locale/en_US/%N >:TCLPATH=/opt/nmrpipe/com >:PATH=/usr/local/bin:/opt/arp-warp-bin/bin/bin-x86_64-Linux:/usr/share/ccp4/dbccp4i/bin:/usr/lib64/ccp4/ccp4i/bin:/usr/libexec/ccp4/bin:/usr/etc:/usr/local/bin:/usr/bin:/bin:/opt/bin:/usr/x86_64-pc-linux-gnu/gcc-bin/4.7.2://opt/solve-resolve/bin:/opt/xds-bin/:/usr/share/ccp4/XIAROOT/xia2-0.3.4.0/Applications:/opt/intel/composerxe-2013_update2.2.146/bin/intel64:/opt/intel/composerxe-2013_update2.2.146/mpirt/bin/intel64:/opt/intel/composerxe-2013_update2.2.146/bin/ia32:/opt/intel/composerxe-2013_update2.2.146/mpirt/bin/ia32:/opt/nmrpipe/com:/opt/nmrpipe/bin:/opt/nmrpipe/dynamo/tcl:/opt/nmrpipe/talosplus/com:/opt/nmrpipe/dynamo/com:/opt/concoord/bin:/opt/nvidia-cg-toolkit/bin:/usr/games/bin:/usr/local/mddnmr/binLinux64Static:/usr/local/mddnmr/com:/opt/cuda/bin:/opt/cuda/libnvvp:/opt/ekopath/bin:/local/scripts >:MAIL=/var/mail/justin >:DESKTOP_SESSION=gnome >:CCP4_CRANK=1 >:XIA2_HOME=/usr/share/ccp4/XIAROOT >:MOSFLM_EXEC=/usr/libexec/ccp4/bin/ipmosflm >:HG=/usr/bin/hg >:QT_IM_MODULE=ibus >:GENTOO=true >:warpdoc=/usr/share/doc/arp-warp-bin-7.1/html/ >:MOSFLM_WISH=/usr/bin/wish >:PWD=/mnt/tmpfs >:NMR_IO_SELECT=0 >:TALOS_DIR=/opt/nmrpipe/talos >:CNS_MODULE=/usr/share/cns/modules >:DBCCP4I_TOP=/usr/share/ccp4/dbccp4i >:CCP4_OPEN=UNKNOWN >:MDD_NMRbin=/usr/local/mddnmr/binLinux64Static >:XMODIFIERS=@im=ibus >:JAVA_HOME=/etc/java-config-2/current-system-vm >:SPARTAP_DIR=/opt/nmrpipe/spartaplus >:JAVAC=/etc/java-config-2/current-system-vm/bin/javac >:CLIBS=/usr/lib64 >:flex_wARP_cbin=/usr/libexec/ccp4/bin >:CETC=/usr/etc >:'PLOT_COMMAND=lp -s' >:EDITOR=nano >:LESSCOLOR=yes >:LANG=en_GB.UTF-8 >:CG_LIB_PATH=/opt/nvidia-cg-toolkit/lib64:/opt/nvidia-cg-toolkit/lib32 >:GNOME_KEYRING_PID=26799 >:'ECHANGELOG_USER=Justin Lecher <jlec@gentoo.org>' >:GSETTINGS_BACKEND=dconf >:NMRTXT=/opt/nmrpipe/nmrtxt >:CNS_NMRLIB=/usr/share/cns/libraries/nmr >:GDM_LANG=en_GB.utf8 >:LC_MEASUREMENT=en_GB.utf8 >:QT_GRAPHICSSYSTEM=raster >:PDBH_TAB=/opt/nmrpipe/pdb/resolution.tab >:SOLVEDIR=//opt/solve-resolve/lib/ >:CCP4_SCR=/tmp >:CLIBD_MON=/usr/share/ccp4/data/monomers/ >:CNS_XTALLIB=/usr/share/cns/libraries/xtal >:SYMOP=/usr/share/ccp4/data/symop.lib >:CNS_NMRMODULE=/usr/share/cns/modules/nmr >:BLASTDB=/usr/share/ncbi/formatdb >:PBS_SERVER_HOME=/var/spool/torque >:HISTIGNORE=fg:bg >:GDMSESSION=gnome >:MOLREPLIB=/usr/share/ccp4/data/monomers/ >:CONCOORDBIN=/opt/concoord/bin >:HISTCONTROL=ignoredups >:CYANALIB=/usr/share/cyana >:COLORFGBG=default;default >:JDK_HOME=/etc/java-config-2/current-system-vm >:SHLVL=1 >:HOME=/local/home/justin >:GFORTRAN_UNBUFFERED_ALL=Y >:MP_SET_NUMTHREADS=1 >:COOT_REF_STRUCTS=/usr/share/coot/reference-structures/ >:PDBH_DIR=/opt/nmrpipe/pdb/pdbH >:CG_COMPILER_EXE=/opt/bin/cgc >:'LS_OPTIONS=--color=auto --group-directories-first -Fv' >:JAVACC_HOME=/usr/share/javacc/ >:GNOME_DESKTOP_SESSION_ID=this-is-deprecated >:CRANK=/usr/ccp4i/crank >:'POVRAY_BETA=povray: This is a RELEASE CANDIDATE version of POV-Ray. General distribution is discouraged.\n\nProblem with option setting\npovray --betacode\nNo input file provided' >:PDBH_BASE=/opt/nmrpipe/pdb >:DYNAMO_KEY=2002084 >:'LESS=-R -M --shift 5' >:VTK_DATA_ROOT=/usr/share/vtk/data >:LOGNAME=justin >:R3D_LIB=/usr/share//materials >:PYTHONPATH=/usr/share/python:/usr/lib/portage/pym >:GCC_SPECS=/usr/lib/gcc/x86_64-pc-linux-gnu/4.7.1/asneeded.specs >:VISUAL=/bin/nano >:CLIBD=/usr/share/ccp4/data >:CVS_RSH=ssh >:PDB_EXTRACT=/usr/share/rcsb/ >:DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-hW1XhCy38a,guid=e236864b5ecc9707ed81b9cb51271586 >:XDG_DATA_DIRS=/usr/local/sh/ccp4/bin: >:CBIN=/usr/libexec/ccp4/bin >:'LESSOPEN=|lesspipe %s' >:CCP4_BROWSER=firefox >:CINCL=/usr/share/ccp4/include >:CCP4_MASTER=/usr >:OMP_NUM_THREADS=8 >:NMRBASE=/opt/nmrpipe >:MMCIFDIC=/usr/lib64/cif_mmdic.lib >:R_HOME=/usr/lib64/R >:VTKHOME=/usr >:BLASTMAT=/usr/share/ncbi/data >:SURF_DIR=/opt/nmrpipe/dynamo/surface >:INFOPATH=/usr/share/info:/usr/share/gcc-data/x86_64-pc-linux-gnu/4.7.2/info:/usr/share/binutils-data/x86_64-pc-linux-gnu/2.23.1/info >:CNS_ROOT=/usr >:WINDOWPATH=7 >:NMRBINTYPE=linux9 >:NMR_IO_TIMEOUT=0 >:DISPLAY=:0 >:oasisbin=/usr/lib64/oasis >:CNS_XRAYLIB=/usr/share/cns/libraries/xray >:RUBYOPT=-rauto_gem >:BINTYPE=linux9 >:TALOSP_DIR=/opt/nmrpipe/talosplus >:'PRINT_COMMAND=lp -s' >:CPROG=/usr/src >:OPENGL_PROFILE=nvidia >:AMBERHOME=/usr/share/ambertools >:LC_TIME=en_GB.utf8 >:CNS_SOLVE=/usr >:'CONFIG_PROTECT=/var/spool/torque /usr/share/gnupg/qualified.txt /var/lib/hsqldb /var/spool/munin-async/.ssh' >:BINSORT_SCR=/tmp >:COLORTERM=rxvt-xpm >:XAUTHORITY=/var/run/gdm/auth-for-justin-HbPXe3/database >:OPENCL_PROFILE=nvidia >:_=/usr/bin/avogadro >:OLDPWD=/local/home/justin/tree/sci-chemistry/avogadro > >limits: >:Limit Soft Limit Hard Limit Units >:Max cpu time unlimited unlimited seconds >:Max file size unlimited unlimited bytes >:Max data size unlimited unlimited bytes >:Max stack size unlimited unlimited bytes >:Max core file size 0 unlimited bytes >:Max resident set unlimited unlimited bytes >:Max processes 126685 126685 processes >:Max open files 1024 4096 files >:Max locked memory 65536 65536 bytes >:Max address space unlimited unlimited bytes >:Max file locks unlimited unlimited locks >:Max pending signals 126685 126685 signals >:Max msgqueue size 819200 819200 bytes >:Max nice priority 0 0 >:Max realtime priority 0 0 >:Max realtime timeout unlimited unlimited us > >maps: >:00400000-004ab000 r-xp 00000000 08:02 1308860 /usr/bin/avogadro >:004ab000-004af000 rw-p 000aa000 08:02 1308860 /usr/bin/avogadro >:010a7000-06a0c000 rw-p 00000000 00:00 0 [heap] >:40c07000-40c09000 r-xs 00000000 08:02 946805 /tmp/gldhJ5cg (deleted) >:40e7e000-40f1a000 rw-p 00000000 00:00 0 >:40f6d000-40f6f000 r-xs 00000000 08:02 947009 /tmp/glFMSp2V (deleted) >:41024000-41026000 r-xs 00000000 08:02 947011 /tmp/glz2iQRB (deleted) >:41725000-41727000 r-xs 00000000 08:02 947008 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rw-p 00000000 00:00 0 [stack:25953] >:2aaab7f5a000-2aaab7f79000 rw-s fff4d000 00:05 50061 /dev/nvidia0 >:2aaab7f81000-2aaab7f91000 rw-p 00000000 00:00 0 [stack:25949] >:2aaab7f99000-2aaab7fd9000 rw-s fd2e3000 00:05 50061 /dev/nvidia0 >:2aaab7fd9000-2aaab7fda000 rw-s e7ee9000 00:05 50061 /dev/nvidia0 >:2aaab7fda000-2aaab7ffa000 rw-s fd2a3000 00:05 50061 /dev/nvidia0 >:2aaab7ffa000-2aaab7ffb000 rw-s e7eea000 00:05 50061 /dev/nvidia0 >:2aaab7ffb000-2aaab7ffc000 rw-s e7eeb000 00:05 50061 /dev/nvidia0 >:2aaab7ffc000-2aaab8000000 rw-s fd1e3000 00:05 50061 /dev/nvidia0 >:2aaab8000000-2aaab8021000 rw-p 00000000 00:00 0 >:2aaab8021000-2aaabc000000 ---p 00000000 00:00 0 >:2aaabc000000-2aaabc040000 rw-s fd283000 00:05 50061 /dev/nvidia0 >:2aaabc040000-2aaabc060000 rw-s fd243000 00:05 50061 /dev/nvidia0 >:2aaabc060000-2aaabc0a0000 rw-s fd223000 00:05 50061 /dev/nvidia0 >:2aaabc0a0000-2aaabc0a1000 rw-s fd1df000 00:05 50061 /dev/nvidia0 >:2aaabc0a1000-2aaabc0c1000 rw-s e01e0000 00:05 50061 /dev/nvidia0 >:2aaabc0c1000-2aaabc0c7000 rw-s fd1de000 00:05 50061 /dev/nvidia0 >:2aaabc0c7000-2aaabc4c7000 rw-s fd1d8000 00:05 50061 /dev/nvidia0 >:2aaabc4c7000-2aaabc8c7000 rw-s fc9b8000 00:05 50061 /dev/nvidia0 >:2aaabc8c7000-2aaabc8c9000 rw-s 00000000 08:02 946805 /tmp/gldhJ5cg (deleted) >:2aaabc8c9000-2aaabccc9000 rw-s fc5b8000 00:05 50061 /dev/nvidia0 >:2aaabccc9000-2aaabcccb000 rw-s 00000000 08:02 947008 /tmp/gl2fXJ75 (deleted) >:2aaabcccb000-2aaabcccd000 rw-s 00000000 08:02 947009 /tmp/glFMSp2V (deleted) >:2aaabcccd000-2aaabcccf000 rw-s 00000000 08:02 947010 /tmp/glapf7WL (deleted) >:2aaabcccf000-2aaabccd1000 rw-s 00000000 08:02 947011 /tmp/glz2iQRB (deleted) >:2aaabccd1000-2aaabccd3000 rw-p 00000000 00:00 0 >:2aaabccdb000-2aaabce57000 rw-s 00000000 00:04 53936134 /SYSV00000000 (deleted) >:2aaabce57000-2aaabceb7000 rw-s 00000000 00:04 53968913 /SYSV00000000 (deleted) >:2aaabcecf000-2aaabcf0b000 rw-s 00000000 00:04 54001683 /SYSV00000000 (deleted) >:2aaabcf0b000-2aaabcf0e000 rw-s 00000000 00:04 54034453 /SYSV00000000 (deleted) >:2aaabcf0e000-2aaabcf18000 r-xp 00000000 08:02 304190 /usr/lib64/gio/modules/libdconfsettings.so >:2aaabcf18000-2aaabd117000 ---p 0000a000 08:02 304190 /usr/lib64/gio/modules/libdconfsettings.so >:2aaabd117000-2aaabd118000 r--p 00009000 08:02 304190 /usr/lib64/gio/modules/libdconfsettings.so >:2aaabd118000-2aaabd119000 rw-p 0000a000 08:02 304190 /usr/lib64/gio/modules/libdconfsettings.so >:2aaabd119000-2aaabd149000 r-xp 00000000 08:02 309512 /usr/lib64/gio/modules/libgvfsdbus.so >:2aaabd149000-2aaabd14b000 rw-p 00030000 08:02 309512 /usr/lib64/gio/modules/libgvfsdbus.so >:2aaabd14b000-2aaabd165000 r-xp 00000000 08:02 304789 /usr/lib64/gio/modules/libgioremote-volume-monitor.so >:2aaabd165000-2aaabd168000 rw-p 0001a000 08:02 304789 /usr/lib64/gio/modules/libgioremote-volume-monitor.so >:2aaabd170000-2aaabd171000 r--s 00000000 08:03 655630 /local/home/justin/.local/share/mime/mime.cache >:2aaabd171000-2aaabd18e000 r--s 00000000 08:02 824658 /usr/share/mime/mime.cache >:2aaabd196000-2aaabd1cc000 r-xp 00000000 08:02 1334002 /usr/lib64/libgvfscommon.so.0.0.0 >:2aaabd1cc000-2aaabd1d2000 rw-p 00035000 08:02 1334002 /usr/lib64/libgvfscommon.so.0.0.0 >:2aaabd1d2000-2aaabd1d3000 ---p 00000000 00:00 0 >:2aaabd1d3000-2aaabd3d3000 rw-p 00000000 00:00 0 [stack:25960] >:2aaabd3d3000-2aaabd627000 r--p 00000000 08:02 1351467 /usr/share/icons/Tango/icon-theme.cache >:2aaabd627000-2aaabf74d000 r--p 00000000 08:02 1434770 /usr/share/icons/hicolor/icon-theme.cache >:2aaabf74d000-2aaabf74e000 ---p 00000000 00:00 0 >:2aaabf74e000-2aaabf94e000 rw-p 00000000 00:00 0 >:2aaabf94e000-2aaabf94f000 ---p 00000000 00:00 0 >:2aaabf94f000-2aaabfb4f000 rw-p 00000000 00:00 0 >:2aaabfb57000-2aaabfb58000 ---p 00000000 00:00 0 >:2aaabfb58000-2aaabfd58000 rw-p 00000000 00:00 0 >:2aaabfd60000-2aaabfd6d000 r--p 00000000 08:02 1088106 /usr/share/fonts/cantarell/Cantarell-Bold.otf >:2aaabfd6d000-2aaabfdcd000 rw-s 00000000 00:04 54067222 /SYSV00000000 (deleted) >:2aaabfdcd000-2aaabfdce000 ---p 00000000 00:00 0 >:2aaabfdce000-2aaabffce000 rw-p 00000000 00:00 0 >:2aaabfffe000-2aaabffff000 r--s 00000000 08:03 655630 /local/home/justin/.local/share/mime/mime.cache >:2aaac0000000-2aaac002d000 rw-p 00000000 00:00 0 >:2aaac002d000-2aaac4000000 ---p 00000000 00:00 0 >:2aaac4000000-2aaac9484000 r--p 00000000 08:02 1355710 /usr/share/icons/gnome/icon-theme.cache >:2aaac9484000-2aaac9485000 ---p 00000000 00:00 0 >:2aaac9485000-2aaac9685000 rw-p 00000000 00:00 0 >:2aaac9685000-2aaac9686000 ---p 00000000 00:00 0 >:2aaac9686000-2aaac9886000 rw-p 00000000 00:00 0 >:2aaac9886000-2aaac989e000 rw-s 00000000 00:04 54099991 /SYSV00000000 (deleted) >:2aaac98b6000-2aaac99b6000 rw-s fda2f000 00:05 50061 /dev/nvidia0 >:2aaac99be000-2aaac9dbe000 rw-s fc0d8000 00:05 50061 /dev/nvidia0 >:2aaac9dee000-2aaac9e0c000 rw-s 00000000 00:04 54132760 /SYSV00000000 (deleted) >:2aaac9e0c000-2aaac9e18000 rw-s 00000000 00:04 54165529 /SYSV00000000 (deleted) >:2aaac9e18000-2aaac9e1c000 rw-p 00000000 00:00 0 >:2aaac9e1c000-2aaac9e28000 r-xp 00000000 08:02 274850 /usr/lib64/gnome-vfs-2.0/modules/libfile.so >:2aaac9e28000-2aaac9e29000 rw-p 0000c000 08:02 274850 /usr/lib64/gnome-vfs-2.0/modules/libfile.so >:2aaac9e29000-2aaac9e46000 r--s 00000000 08:02 824658 /usr/share/mime/mime.cache >:2aaac9e46000-2aaac9e4a000 rw-p 00000000 00:00 0 >:2aaac9e74000-2aaac9e7c000 r-xp 00000000 08:02 786741 /lib64/libacl.so.1.1.0 >:2aaac9e7c000-2aaac9e7d000 rw-p 00007000 08:02 786741 /lib64/libacl.so.1.1.0 >:2aaac9e7d000-2aaac9e81000 r-xp 00000000 08:02 786744 /lib64/libattr.so.1.1.0 >:2aaac9e81000-2aaac9e82000 rw-p 00003000 08:02 786744 /lib64/libattr.so.1.1.0 >:2aaacc000000-2aaacc021000 rw-p 00000000 00:00 0 >:2aaacc021000-2aaad0000000 ---p 00000000 00:00 0 >:2aaad0000000-2aaad09f3000 rw-p 00000000 00:00 0 >:2aaad09f3000-2aaad4000000 ---p 00000000 00:00 0 >:2aaad4000000-2aaad4021000 rw-p 00000000 00:00 0 >:2aaad4021000-2aaad8000000 ---p 00000000 00:00 0 >:2aaad8000000-2aaad8021000 rw-p 00000000 00:00 0 >:2aaad8021000-2aaadc000000 ---p 00000000 00:00 0 >:2aaadc000000-2aaadc021000 rw-p 00000000 00:00 0 >:2aaadc021000-2aaae0000000 ---p 00000000 00:00 0 >:2aaae0000000-2aaae0021000 rw-p 00000000 00:00 0 >:2aaae0021000-2aaae4000000 ---p 00000000 00:00 0 >:7fff95486000-7fff9557e000 rw-p 00000000 00:00 0 >:7fff955dd000-7fff955de000 r-xp 00000000 00:00 0 [vdso] >:ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0 [vsyscall] > >open_fds: >:0:/dev/pts/13 >:pos: 0 >:flags: 0100002 >:1:/dev/pts/13 >:pos: 0 >:flags: 0100002 >:2:/dev/pts/13 >:pos: 0 >:flags: 0100002 >:3:anon_inode:[eventfd] >:pos: 0 >:flags: 02004002 >:eventfd-count: 8 >:4:pipe:[2186536] >:pos: 0 >:flags: 02004000 >:5:pipe:[2186536] >:pos: 0 >:flags: 02004001 >:6:socket:[2186537] >:pos: 0 >:flags: 02004002 >:7:socket:[2186538] >:pos: 0 >:flags: 02004002 >:8:socket:[2183857] >:pos: 0 >:flags: 02004002 >:9:socket:[2183859] >:pos: 0 >:flags: 02004002 >:10:anon_inode:[eventfd] >:pos: 0 >:flags: 02004002 >:eventfd-count: 1 >:11:socket:[2183860] >:pos: 0 >:flags: 02000002 >:12:anon_inode:[eventfd] >:pos: 0 >:flags: 02004002 >:eventfd-count: 0 >:13:/dev/nvidiactl >:pos: 0 >:flags: 02100002 >:14:/dev/nvidia0 >:pos: 0 >:flags: 02100002 >:15:/dev/nvidia0 >:pos: 0 >:flags: 02100002 >:16:/dev/nvidia0 >:pos: 0 >:flags: 02100002 >:17:/dev/nvidia0 >:pos: 0 >:flags: 02100002 >:18:/dev/nvidia0 >:pos: 0 >:flags: 02100002 >:19:/local/home/justin/.nv/GLCache/5df678b67843a44109f701962e3d92a0/b443516c0766ea85/78ca135fb028a16a.toc >:pos: 1428 >:flags: 02100002 >:20:/local/home/justin/.nv/GLCache/5df678b67843a44109f701962e3d92a0/b443516c0766ea85/78ca135fb028a16a.bin >:pos: 27174 >:flags: 02100002 >:21:socket:[2187437] >:pos: 0 >:flags: 02004002 >:22:anon_inode:[eventfd] >:pos: 0 >:flags: 02004002 >:eventfd-count: 0 >:23:anon_inode:inotify >:pos: 0 >:flags: 02004000 >:inotify wd:1 ino:80466 sdev:800003 mask:800afce ignored_mask:0 fhandle-bytes:8 fhandle-type:1 f_handle:660408004be88c9f > >END: >
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