config.log

config.log (text/plain), 52.97 KB, created by Luis Ferreira on 2012-12-30 20:40:04 UTC

This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by cholmod configure 2.0.1, which was
generated by GNU Autoconf 2.69.  Invocation command line was

  $ /var/tmp/portage/sci-libs/cholmod-2.0.1/work/cholmod-2.0.1/configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 --disable-dependency-tracking --docdir=/usr/share/doc/cholmod-2.0.1 --enable-shared --disable-static --with-blas=-lblas   --with-lapack=-llapack -lblas   --without-doc --with-modify --with-matrixops --with-partition --with-supernodal --with-cuda --with-cublas-libs=-L/opt/cuda/lib64 -lcublas --with-cublas-cflags=-I/opt/cuda/include

## --------- ##
## Platform. ##
## --------- ##

hostname = House
uname -m = x86_64
uname -r = 3.6.11-gentoo
uname -s = Linux
uname -v = #1 SMP PREEMPT Fri Dec 28 23:52:27 WET 2012

/usr/bin/uname -p = Intel(R) Core(TM) i7 CPU 860 @ 2.80GHz
/bin/uname -X     = unknown

/bin/arch              = unknown
/usr/bin/arch -k       = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo      = unknown
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /usr/lib64/portage/bin/ebuild-helpers
PATH: /usr/local/sbin
PATH: /usr/local/bin
PATH: /usr/sbin
PATH: /usr/bin
PATH: /sbin
PATH: /bin
PATH: /opt/bin
PATH: /usr/x86_64-pc-linux-gnu/gcc-bin/4.5.4
PATH: /opt/cuda/bin


## ----------- ##
## Core tests. ##
## ----------- ##

configure:2744: checking for a BSD-compatible install
configure:2812: result: /usr/bin/install -c
configure:2823: checking whether build environment is sane
configure:2878: result: yes
configure:3029: checking for a thread-safe mkdir -p
configure:3068: result: /bin/mkdir -p
configure:3075: checking for gawk
configure:3091: found /usr/bin/gawk
configure:3102: result: gawk
configure:3113: checking whether make sets $(MAKE)
configure:3135: result: yes
configure:3251: checking build system type
configure:3265: result: x86_64-pc-linux-gnu
configure:3285: checking host system type
configure:3298: result: x86_64-pc-linux-gnu
configure:3339: checking how to print strings
configure:3366: result: printf
configure:3399: checking for style of include used by make
configure:3427: result: GNU
configure:3458: checking for x86_64-pc-linux-gnu-gcc
configure:3474: found /usr/bin/x86_64-pc-linux-gnu-gcc
configure:3485: result: x86_64-pc-linux-gnu-gcc
configure:3754: checking for C compiler version
configure:3763: x86_64-pc-linux-gnu-gcc --version >&5
x86_64-pc-linux-gnu-gcc (Gentoo 4.5.4 p1.0, pie-0.4.7) 4.5.4
Copyright (C) 2010 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:3774: $? = 0
configure:3763: x86_64-pc-linux-gnu-gcc -v >&5
Using built-in specs.
COLLECT_GCC=/usr/x86_64-pc-linux-gnu/gcc-bin/4.5.4/x86_64-pc-linux-gnu-gcc
COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-pc-linux-gnu/4.5.4/lto-wrapper
Target: x86_64-pc-linux-gnu
Configured with: /var/tmp/portage/sys-devel/gcc-4.5.4/work/gcc-4.5.4/configure --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/4.5.4 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.5.4 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.5.4/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.5.4/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/include/g++-v4 --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --disable-altivec --disable-fixed-point --with-ppl --with-cloog --disable-ppl-version-check --with-cloog-include=/usr/include/cloog-ppl --disable-lto --enable-nls --without-included-gettext --with-system-zlib --enable-obsolete --disable-werror --enable-secureplt --disable-multilib --enable-libmudflap --disable-libssp --enable-libgomp --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/4.5.4/python --enable-checking=release --enable-java-awt=gtk --enable-languages=c,c++,java,fortran --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --enable-targets=all --with-bugurl=http://bugs.gentoo.org/ --with-pkgversion='Gentoo 4.5.4 p1.0, pie-0.4.7'
Thread model: posix
gcc version 4.5.4 (Gentoo 4.5.4 p1.0, pie-0.4.7) 
configure:3774: $? = 0
configure:3763: x86_64-pc-linux-gnu-gcc -V >&5
x86_64-pc-linux-gnu-gcc: '-V' option must have argument
configure:3774: $? = 1
configure:3763: x86_64-pc-linux-gnu-gcc -qversion >&5
x86_64-pc-linux-gnu-gcc: unrecognized option '-qversion'
x86_64-pc-linux-gnu-gcc: no input files
configure:3774: $? = 1
configure:3794: checking whether the C compiler works
configure:3816: x86_64-pc-linux-gnu-gcc -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:3820: $? = 0
configure:3868: result: yes
configure:3871: checking for C compiler default output file name
configure:3873: result: a.out
configure:3879: checking for suffix of executables
configure:3886: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:3890: $? = 0
configure:3912: result: 
configure:3934: checking whether we are cross compiling
configure:3942: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:3946: $? = 0
configure:3953: ./conftest
configure:3957: $? = 0
configure:3972: result: no
configure:3977: checking for suffix of object files
configure:3999: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:4003: $? = 0
configure:4024: result: o
configure:4028: checking whether we are using the GNU C compiler
configure:4047: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:4047: $? = 0
configure:4056: result: yes
configure:4065: checking whether x86_64-pc-linux-gnu-gcc accepts -g
configure:4085: x86_64-pc-linux-gnu-gcc -c -g  conftest.c >&5
configure:4085: $? = 0
configure:4126: result: yes
configure:4143: checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89
configure:4206: x86_64-pc-linux-gnu-gcc  -c -march=native -O2 -pipe  conftest.c >&5
configure:4206: $? = 0
configure:4219: result: none needed
configure:4241: checking dependency style of x86_64-pc-linux-gnu-gcc
configure:4352: result: none
configure:4367: checking for a sed that does not truncate output
configure:4431: result: /bin/sed
configure:4449: checking for grep that handles long lines and -e
configure:4507: result: /bin/grep
configure:4512: checking for egrep
configure:4574: result: /bin/grep -E
configure:4579: checking for fgrep
configure:4641: result: /bin/grep -F
configure:4676: checking for ld used by x86_64-pc-linux-gnu-gcc
configure:4743: result: /usr/x86_64-pc-linux-gnu/bin/ld
configure:4750: checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld
configure:4765: result: yes
configure:4777: checking for BSD- or MS-compatible name lister (nm)
configure:4826: result: /usr/bin/nm -B
configure:4956: checking the name lister (/usr/bin/nm -B) interface
configure:4963: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:4966: /usr/bin/nm -B "conftest.o"
configure:4969: output
0000000000000000 B some_variable
configure:4976: result: BSD nm
configure:4979: checking whether ln -s works
configure:4983: result: yes
configure:4991: checking the maximum length of command line arguments
configure:5126: result: 1572864
configure:5143: checking whether the shell understands some XSI constructs
configure:5153: result: yes
configure:5157: checking whether the shell understands "+="
configure:5163: result: yes
configure:5198: checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format
configure:5238: result: func_convert_file_noop
configure:5245: checking how to convert x86_64-pc-linux-gnu file names to toolchain format
configure:5265: result: func_convert_file_noop
configure:5272: checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files
configure:5279: result: -r
configure:5313: checking for x86_64-pc-linux-gnu-objdump
configure:5329: found /usr/bin/x86_64-pc-linux-gnu-objdump
configure:5340: result: x86_64-pc-linux-gnu-objdump
configure:5412: checking how to recognize dependent libraries
configure:5614: result: pass_all
configure:5659: checking for x86_64-pc-linux-gnu-dlltool
configure:5689: result: no
configure:5699: checking for dlltool
configure:5729: result: no
configure:5759: checking how to associate runtime and link libraries
configure:5786: result: printf %s\n
configure:5803: checking for x86_64-pc-linux-gnu-ar
configure:5819: found /usr/bin/x86_64-pc-linux-gnu-ar
configure:5830: result: x86_64-pc-linux-gnu-ar
configure:5911: checking for archiver @FILE support
configure:5928: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:5928: $? = 0
configure:5931: x86_64-pc-linux-gnu-ar cru libconftest.a @conftest.lst >&5
configure:5934: $? = 0
configure:5939: x86_64-pc-linux-gnu-ar cru libconftest.a @conftest.lst >&5
x86_64-pc-linux-gnu-ar: conftest.o: No such file or directory
configure:5942: $? = 1
configure:5954: result: @
configure:5972: checking for x86_64-pc-linux-gnu-strip
configure:5988: found /usr/bin/x86_64-pc-linux-gnu-strip
configure:5999: result: x86_64-pc-linux-gnu-strip
configure:6071: checking for x86_64-pc-linux-gnu-ranlib
configure:6087: found /usr/bin/x86_64-pc-linux-gnu-ranlib
configure:6098: result: x86_64-pc-linux-gnu-ranlib
configure:6240: checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object
configure:6360: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:6363: $? = 0
configure:6367: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm
configure:6370: $? = 0
configure:6436: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c conftstm.o >&5
configure:6439: $? = 0
configure:6477: result: ok
configure:6514: checking for sysroot
configure:6544: result: no
configure:6621: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:6624: $? = 0
configure:6760: checking for x86_64-pc-linux-gnu-mt
configure:6790: result: no
configure:6800: checking for mt
configure:6830: result: no
configure:6850: checking if : is a manifest tool
configure:6856: : '-?'
configure:6864: result: no
configure:7506: checking how to run the C preprocessor
configure:7537: x86_64-pc-linux-gnu-gcc -E  conftest.c
configure:7537: $? = 0
configure:7551: x86_64-pc-linux-gnu-gcc -E  conftest.c
conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:7551: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cholmod"
| #define PACKAGE_TARNAME "cholmod"
| #define PACKAGE_VERSION "2.0.1"
| #define PACKAGE_STRING "cholmod 2.0.1"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL ""
| #define PACKAGE "cholmod"
| #define VERSION "2.0.1"
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:7576: result: x86_64-pc-linux-gnu-gcc -E
configure:7596: x86_64-pc-linux-gnu-gcc -E  conftest.c
configure:7596: $? = 0
configure:7610: x86_64-pc-linux-gnu-gcc -E  conftest.c
conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory
compilation terminated.
configure:7610: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cholmod"
| #define PACKAGE_TARNAME "cholmod"
| #define PACKAGE_VERSION "2.0.1"
| #define PACKAGE_STRING "cholmod 2.0.1"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL ""
| #define PACKAGE "cholmod"
| #define VERSION "2.0.1"
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:7639: checking for ANSI C header files
configure:7659: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:7659: $? = 0
configure:7732: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:7732: $? = 0
configure:7732: ./conftest
configure:7732: $? = 0
configure:7743: result: yes
configure:7756: checking for sys/types.h
configure:7756: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:7756: $? = 0
configure:7756: result: yes
configure:7756: checking for sys/stat.h
configure:7756: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:7756: $? = 0
configure:7756: result: yes
configure:7756: checking for stdlib.h
configure:7756: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:7756: $? = 0
configure:7756: result: yes
configure:7756: checking for string.h
configure:7756: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:7756: $? = 0
configure:7756: result: yes
configure:7756: checking for memory.h
configure:7756: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:7756: $? = 0
configure:7756: result: yes
configure:7756: checking for strings.h
configure:7756: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:7756: $? = 0
configure:7756: result: yes
configure:7756: checking for inttypes.h
configure:7756: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:7756: $? = 0
configure:7756: result: yes
configure:7756: checking for stdint.h
configure:7756: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:7756: $? = 0
configure:7756: result: yes
configure:7756: checking for unistd.h
configure:7756: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:7756: $? = 0
configure:7756: result: yes
configure:7770: checking for dlfcn.h
configure:7770: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:7770: $? = 0
configure:7770: result: yes
configure:7976: checking for objdir
configure:7991: result: .libs
configure:8262: checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions
configure:8280: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C
configure:8284: $? = 0
configure:8297: result: no
configure:8624: checking for x86_64-pc-linux-gnu-gcc option to produce PIC
configure:8631: result: -fPIC -DPIC
configure:8639: checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works
configure:8657: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  -fPIC -DPIC -DPIC conftest.c >&5
configure:8661: $? = 0
configure:8674: result: yes
configure:8703: checking if x86_64-pc-linux-gnu-gcc static flag -static works
configure:8731: result: yes
configure:8746: checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o
configure:8767: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  -o out/conftest2.o conftest.c >&5
configure:8771: $? = 0
configure:8793: result: yes
configure:8801: checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o
configure:8848: result: yes
configure:8881: checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries
configure:10041: result: yes
configure:10078: checking whether -lc should be explicitly linked in
configure:10086: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:10089: $? = 0
configure:10104: x86_64-pc-linux-gnu-gcc -shared  -fPIC -DPIC conftest.o  -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep  -lc  \>/dev/null 2\>\&1
configure:10107: $? = 0
configure:10121: result: no
configure:10281: checking dynamic linker characteristics
configure:10805: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed -Wl,-rpath -Wl,/foo conftest.c  >&5
configure:10805: $? = 0
configure:11027: result: GNU/Linux ld.so
configure:11134: checking how to hardcode library paths into programs
configure:11159: result: immediate
configure:11699: checking whether stripping libraries is possible
configure:11704: result: yes
configure:11739: checking if libtool supports shared libraries
configure:11741: result: yes
configure:11744: checking whether to build shared libraries
configure:11765: result: yes
configure:11768: checking whether to build static libraries
configure:11772: result: no
configure:11817: checking for x86_64-pc-linux-gnu-gcc
configure:11844: result: x86_64-pc-linux-gnu-gcc
configure:12113: checking for C compiler version
configure:12122: x86_64-pc-linux-gnu-gcc --version >&5
x86_64-pc-linux-gnu-gcc (Gentoo 4.5.4 p1.0, pie-0.4.7) 4.5.4
Copyright (C) 2010 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:12133: $? = 0
configure:12122: x86_64-pc-linux-gnu-gcc -v >&5
Using built-in specs.
COLLECT_GCC=/usr/x86_64-pc-linux-gnu/gcc-bin/4.5.4/x86_64-pc-linux-gnu-gcc
COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-pc-linux-gnu/4.5.4/lto-wrapper
Target: x86_64-pc-linux-gnu
Configured with: /var/tmp/portage/sys-devel/gcc-4.5.4/work/gcc-4.5.4/configure --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/4.5.4 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.5.4 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.5.4/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.5.4/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/include/g++-v4 --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --disable-altivec --disable-fixed-point --with-ppl --with-cloog --disable-ppl-version-check --with-cloog-include=/usr/include/cloog-ppl --disable-lto --enable-nls --without-included-gettext --with-system-zlib --enable-obsolete --disable-werror --enable-secureplt --disable-multilib --enable-libmudflap --disable-libssp --enable-libgomp --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/4.5.4/python --enable-checking=release --enable-java-awt=gtk --enable-languages=c,c++,java,fortran --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --enable-targets=all --with-bugurl=http://bugs.gentoo.org/ --with-pkgversion='Gentoo 4.5.4 p1.0, pie-0.4.7'
Thread model: posix
gcc version 4.5.4 (Gentoo 4.5.4 p1.0, pie-0.4.7) 
configure:12133: $? = 0
configure:12122: x86_64-pc-linux-gnu-gcc -V >&5
x86_64-pc-linux-gnu-gcc: '-V' option must have argument
configure:12133: $? = 1
configure:12122: x86_64-pc-linux-gnu-gcc -qversion >&5
x86_64-pc-linux-gnu-gcc: unrecognized option '-qversion'
x86_64-pc-linux-gnu-gcc: no input files
configure:12133: $? = 1
configure:12137: checking whether we are using the GNU C compiler
configure:12165: result: yes
configure:12174: checking whether x86_64-pc-linux-gnu-gcc accepts -g
configure:12235: result: yes
configure:12252: checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89
configure:12328: result: none needed
configure:12350: checking dependency style of x86_64-pc-linux-gnu-gcc
configure:12461: result: none
configure:12481: checking float.h usability
configure:12481: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:12481: $? = 0
configure:12481: result: yes
configure:12481: checking float.h presence
configure:12481: x86_64-pc-linux-gnu-gcc -E  conftest.c
configure:12481: $? = 0
configure:12481: result: yes
configure:12481: checking for float.h
configure:12481: result: yes
configure:12481: checking limits.h usability
configure:12481: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:12481: $? = 0
configure:12481: result: yes
configure:12481: checking limits.h presence
configure:12481: x86_64-pc-linux-gnu-gcc -E  conftest.c
configure:12481: $? = 0
configure:12481: result: yes
configure:12481: checking for limits.h
configure:12481: result: yes
configure:12481: checking stddef.h usability
configure:12481: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:12481: $? = 0
configure:12481: result: yes
configure:12481: checking stddef.h presence
configure:12481: x86_64-pc-linux-gnu-gcc -E  conftest.c
configure:12481: $? = 0
configure:12481: result: yes
configure:12481: checking for stddef.h
configure:12481: result: yes
configure:12481: checking for stdlib.h
configure:12481: result: yes
configure:12481: checking for string.h
configure:12481: result: yes
configure:12493: checking for uid_t in sys/types.h
configure:12512: result: yes
configure:12523: checking for int32_t
configure:12523: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:12523: $? = 0
configure:12523: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
conftest.c: In function 'main':
conftest.c:66:53: warning: integer overflow in expression
conftest.c:65:12: error: size of array 'test_array' is negative
conftest.c:65:12: error: storage size of 'test_array' isn't constant
configure:12523: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cholmod"
| #define PACKAGE_TARNAME "cholmod"
| #define PACKAGE_VERSION "2.0.1"
| #define PACKAGE_STRING "cholmod 2.0.1"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL ""
| #define PACKAGE "cholmod"
| #define VERSION "2.0.1"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_FLOAT_H 1
| #define HAVE_LIMITS_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| 	        enum { N = 32 / 2 - 1 };
| int
| main ()
| {
| static int test_array [1 - 2 * !((int32_t) (((((int32_t) 1 << N) << N) - 1) * 2 + 1)
| 		 < (int32_t) (((((int32_t) 1 << N) << N) - 1) * 2 + 2))];
| test_array [0] = 0;
| return test_array [0];
| 
|   ;
|   return 0;
| }
configure:12523: result: yes
configure:12534: checking for mode_t
configure:12534: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:12534: $? = 0
configure:12534: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
conftest.c: In function 'main':
conftest.c:64:21: error: expected expression before ')' token
configure:12534: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cholmod"
| #define PACKAGE_TARNAME "cholmod"
| #define PACKAGE_VERSION "2.0.1"
| #define PACKAGE_STRING "cholmod 2.0.1"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL ""
| #define PACKAGE "cholmod"
| #define VERSION "2.0.1"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_FLOAT_H 1
| #define HAVE_LIMITS_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof ((mode_t)))
| 	    return 0;
|   ;
|   return 0;
| }
configure:12534: result: yes
configure:12545: checking for off_t
configure:12545: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:12545: $? = 0
configure:12545: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
conftest.c: In function 'main':
conftest.c:64:20: error: expected expression before ')' token
configure:12545: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cholmod"
| #define PACKAGE_TARNAME "cholmod"
| #define PACKAGE_VERSION "2.0.1"
| #define PACKAGE_STRING "cholmod 2.0.1"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL ""
| #define PACKAGE "cholmod"
| #define VERSION "2.0.1"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_FLOAT_H 1
| #define HAVE_LIMITS_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof ((off_t)))
| 	    return 0;
|   ;
|   return 0;
| }
configure:12545: result: yes
configure:12556: checking for pid_t
configure:12556: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:12556: $? = 0
configure:12556: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
conftest.c: In function 'main':
conftest.c:64:20: error: expected expression before ')' token
configure:12556: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cholmod"
| #define PACKAGE_TARNAME "cholmod"
| #define PACKAGE_VERSION "2.0.1"
| #define PACKAGE_STRING "cholmod 2.0.1"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL ""
| #define PACKAGE "cholmod"
| #define VERSION "2.0.1"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_FLOAT_H 1
| #define HAVE_LIMITS_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof ((pid_t)))
| 	    return 0;
|   ;
|   return 0;
| }
configure:12556: result: yes
configure:12567: checking for size_t
configure:12567: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:12567: $? = 0
configure:12567: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
conftest.c: In function 'main':
conftest.c:64:21: error: expected expression before ')' token
configure:12567: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cholmod"
| #define PACKAGE_TARNAME "cholmod"
| #define PACKAGE_VERSION "2.0.1"
| #define PACKAGE_STRING "cholmod 2.0.1"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL ""
| #define PACKAGE "cholmod"
| #define VERSION "2.0.1"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_FLOAT_H 1
| #define HAVE_LIMITS_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof ((size_t)))
| 	    return 0;
|   ;
|   return 0;
| }
configure:12567: result: yes
configure:12578: checking for ssize_t
configure:12578: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:12578: $? = 0
configure:12578: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
conftest.c: In function 'main':
conftest.c:64:22: error: expected expression before ')' token
configure:12578: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cholmod"
| #define PACKAGE_TARNAME "cholmod"
| #define PACKAGE_VERSION "2.0.1"
| #define PACKAGE_STRING "cholmod 2.0.1"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL ""
| #define PACKAGE "cholmod"
| #define VERSION "2.0.1"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_FLOAT_H 1
| #define HAVE_LIMITS_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof ((ssize_t)))
| 	    return 0;
|   ;
|   return 0;
| }
configure:12578: result: yes
configure:12589: checking whether struct tm is in sys/time.h or time.h
configure:12609: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:12609: $? = 0
configure:12616: result: time.h
configure:12624: checking for struct tm.tm_zone
configure:12624: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:12624: $? = 0
configure:12624: result: yes
configure:12695: checking for working alloca.h
configure:12712: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:12712: $? = 0
configure:12720: result: yes
configure:12728: checking for alloca
configure:12765: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:12765: $? = 0
configure:12773: result: yes
configure:12879: checking for error_at_line
configure:12895: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:12895: $? = 0
configure:12903: result: yes
configure:12916: checking for stdlib.h
configure:12916: result: yes
configure:12926: checking for GNU libc compatible malloc
configure:12950: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:12950: $? = 0
configure:12950: ./conftest
configure:12950: $? = 0
configure:12960: result: yes
configure:12981: checking whether time.h and sys/time.h may both be included
configure:13001: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:13001: $? = 0
configure:13008: result: yes
configure:13022: checking for sys/time.h
configure:13022: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:13022: $? = 0
configure:13022: result: yes
configure:13022: checking for unistd.h
configure:13022: result: yes
configure:13043: checking for alarm
configure:13043: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:13043: $? = 0
configure:13043: result: yes
configure:13056: checking for working mktime
configure:13258: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:13258: $? = 0
configure:13258: ./conftest
configure:13258: $? = 0
configure:13268: result: yes
configure:13281: checking for stdlib.h
configure:13281: result: yes
configure:13291: checking for GNU libc compatible realloc
configure:13315: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:13315: $? = 0
configure:13315: ./conftest
configure:13315: $? = 0
configure:13325: result: yes
configure:13346: checking for working strtod
configure:13387: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c  >&5
conftest.c: In function 'main':
conftest.c:95:12: warning: ignoring return value of 'strtod', declared with attribute warn_unused_result
configure:13387: $? = 0
configure:13387: ./conftest
configure:13387: $? = 0
configure:13397: result: yes
configure:13462: checking for atexit
configure:13462: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:13462: $? = 0
configure:13462: result: yes
configure:13462: checking for localtime_r
configure:13462: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:13462: $? = 0
configure:13462: result: yes
configure:13462: checking for mblen
configure:13462: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:13462: $? = 0
configure:13462: result: yes
configure:13462: checking for putenv
configure:13462: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:13462: $? = 0
configure:13462: result: yes
configure:13462: checking for realpath
configure:13462: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:13462: $? = 0
configure:13462: result: yes
configure:13462: checking for rpmatch
configure:13462: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:13462: $? = 0
configure:13462: result: yes
configure:13462: checking for select
configure:13462: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:13462: $? = 0
configure:13462: result: yes
configure:13462: checking for setenv
configure:13462: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:13462: $? = 0
configure:13462: result: yes
configure:13462: checking for stime
configure:13462: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:13462: $? = 0
configure:13462: result: yes
configure:13462: checking for strtol
configure:13462: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:13462: $? = 0
configure:13462: result: yes
configure:13462: checking for strtoul
configure:13462: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:13462: $? = 0
configure:13462: result: yes
configure:13462: checking for strtoull
configure:13462: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:13462: $? = 0
configure:13462: result: yes
configure:13462: checking for tzset
configure:13462: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:13462: $? = 0
configure:13462: result: yes
configure:13473: checking for sqrt in -lm
configure:13498: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c -lm   >&5
conftest.c:60:6: warning: conflicting types for built-in function 'sqrt'
configure:13498: $? = 0
configure:13507: result: yes
configure:13519: checking for clock_gettime in -lrt
configure:13544: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c -lrt  -lm  >&5
configure:13544: $? = 0
configure:13553: result: yes
configure:13578: checking for x86_64-pc-linux-gnu-pkg-config
configure:13611: result: no
configure:13621: checking for pkg-config
configure:13639: found /usr/bin/pkg-config
configure:13651: result: /usr/bin/pkg-config
configure:13676: checking pkg-config is at least version 0.9.0
configure:13679: result: yes
configure:13712: checking for SUITESPARSECONFIG
configure:13719: $PKG_CONFIG --exists --print-errors "suitesparseconfig"
configure:13722: $? = 0
configure:13736: $PKG_CONFIG --exists --print-errors "suitesparseconfig"
configure:13739: $? = 0
configure:13797: result: yes
configure:13826: checking SuiteSparse_config.h usability
configure:13826: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe    conftest.c >&5
configure:13826: $? = 0
configure:13826: result: yes
configure:13826: checking SuiteSparse_config.h presence
configure:13826: x86_64-pc-linux-gnu-gcc -E    conftest.c
configure:13826: $? = 0
configure:13826: result: yes
configure:13826: checking for SuiteSparse_config.h
configure:13826: result: yes
configure:13829: checking for SuiteSparse_malloc in -lsuitesparseconfig
configure:13854: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe    -Wl,-O1 -Wl,--as-needed -lsuitesparseconfig   conftest.c -lsuitesparseconfig  -lrt -lm  >&5
configure:13854: $? = 0
configure:13864: result: yes
configure:13900: checking whether to build user guide
configure:14167: result: no
configure:14346: checking cublas_v2.h usability
configure:14346: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  -I/opt/cuda/include conftest.c >&5
configure:14346: $? = 0
configure:14346: result: yes
configure:14346: checking cublas_v2.h presence
configure:14346: x86_64-pc-linux-gnu-gcc -E  -I/opt/cuda/include conftest.c
configure:14346: $? = 0
configure:14346: result: yes
configure:14346: checking for cublas_v2.h
configure:14346: result: yes
configure:14349: checking for cublasDgemm in -lcublas
configure:14374: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -I/opt/cuda/include -Wl,-O1 -Wl,--as-needed -L/opt/cuda/lib64 -lcublas conftest.c -lcublas  -lrt -lm  >&5
/var/tmp/portage/sci-libs/cholmod-2.0.1/temp/ccKrajc0.o: In function `main':
conftest.c:(.text+0x7): undefined reference to `cublasDgemm'
collect2: ld returned 1 exit status
configure:14374: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "cholmod"
| #define PACKAGE_TARNAME "cholmod"
| #define PACKAGE_VERSION "2.0.1"
| #define PACKAGE_STRING "cholmod 2.0.1"
| #define PACKAGE_BUGREPORT "[e-mail]"
| #define PACKAGE_URL ""
| #define PACKAGE "cholmod"
| #define VERSION "2.0.1"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define HAVE_FLOAT_H 1
| #define HAVE_LIMITS_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRUCT_TM_TM_ZONE 1
| #define HAVE_TM_ZONE 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define HAVE_STDLIB_H 1
| #define HAVE_MALLOC 1
| #define TIME_WITH_SYS_TIME 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_ALARM 1
| #define HAVE_STDLIB_H 1
| #define HAVE_REALLOC 1
| #define HAVE_ATEXIT 1
| #define HAVE_LOCALTIME_R 1
| #define HAVE_MBLEN 1
| #define HAVE_PUTENV 1
| #define HAVE_REALPATH 1
| #define HAVE_RPMATCH 1
| #define HAVE_SELECT 1
| #define HAVE_SETENV 1
| #define HAVE_STIME 1
| #define HAVE_STRTOL 1
| #define HAVE_STRTOUL 1
| #define HAVE_STRTOULL 1
| #define HAVE_TZSET 1
| #define HAVE_LIBM 1
| #define HAVE_LIBRT 1
| #define HAVE_SUITESPARSECONFIG 1
| /* end confdefs.h.  */
| 
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char cublasDgemm ();
| int
| main ()
| {
| return cublasDgemm ();
|   ;
|   return 0;
| }
configure:14384: result: no
configure:14412: error: Could not find cuda blas library

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=x86_64-pc-linux-gnu
ac_cv_c_compiler_gnu=yes
ac_cv_c_int32_t=yes
ac_cv_env_AMD_CFLAGS_set=
ac_cv_env_AMD_CFLAGS_value=
ac_cv_env_AMD_LIBS_set=
ac_cv_env_AMD_LIBS_value=
ac_cv_env_BLAS_CFLAGS_set=
ac_cv_env_BLAS_CFLAGS_value=
ac_cv_env_BLAS_LIBS_set=
ac_cv_env_BLAS_LIBS_value=
ac_cv_env_CAMD_CFLAGS_set=
ac_cv_env_CAMD_CFLAGS_value=
ac_cv_env_CAMD_LIBS_set=
ac_cv_env_CAMD_LIBS_value=
ac_cv_env_CCOLAMD_CFLAGS_set=
ac_cv_env_CCOLAMD_CFLAGS_value=
ac_cv_env_CCOLAMD_LIBS_set=
ac_cv_env_CCOLAMD_LIBS_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=set
ac_cv_env_CFLAGS_value='-march=native -O2 -pipe'
ac_cv_env_COLAMD_CFLAGS_set=
ac_cv_env_COLAMD_CFLAGS_value=
ac_cv_env_COLAMD_LIBS_set=
ac_cv_env_COLAMD_LIBS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CUBLAS_CFLAGS_set=
ac_cv_env_CUBLAS_CFLAGS_value=
ac_cv_env_CUBLAS_LIBS_set=
ac_cv_env_CUBLAS_LIBS_value=
ac_cv_env_F77_set=
ac_cv_env_F77_value=
ac_cv_env_FFLAGS_set=set
ac_cv_env_FFLAGS_value='-O2 -pipe'
ac_cv_env_LAPACK_CFLAGS_set=
ac_cv_env_LAPACK_CFLAGS_value=
ac_cv_env_LAPACK_LIBS_set=
ac_cv_env_LAPACK_LIBS_value=
ac_cv_env_LDFLAGS_set=set
ac_cv_env_LDFLAGS_value='-Wl,-O1 -Wl,--as-needed'
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_METIS_CFLAGS_set=
ac_cv_env_METIS_CFLAGS_value=
ac_cv_env_METIS_LIBS_set=
ac_cv_env_METIS_LIBS_value=
ac_cv_env_PKG_CONFIG_LIBDIR_set=
ac_cv_env_PKG_CONFIG_LIBDIR_value=
ac_cv_env_PKG_CONFIG_PATH_set=set
ac_cv_env_PKG_CONFIG_PATH_value=/usr/lib64/pkgconfig
ac_cv_env_PKG_CONFIG_set=
ac_cv_env_PKG_CONFIG_value=
ac_cv_env_SUITESPARSECONFIG_CFLAGS_set=
ac_cv_env_SUITESPARSECONFIG_CFLAGS_value=
ac_cv_env_SUITESPARSECONFIG_LIBS_set=
ac_cv_env_SUITESPARSECONFIG_LIBS_value=
ac_cv_env_build_alias_set=set
ac_cv_env_build_alias_value=x86_64-pc-linux-gnu
ac_cv_env_host_alias_set=set
ac_cv_env_host_alias_value=x86_64-pc-linux-gnu
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_func_alarm=yes
ac_cv_func_alloca_works=yes
ac_cv_func_atexit=yes
ac_cv_func_localtime_r=yes
ac_cv_func_malloc_0_nonnull=yes
ac_cv_func_mblen=yes
ac_cv_func_putenv=yes
ac_cv_func_realloc_0_nonnull=yes
ac_cv_func_realpath=yes
ac_cv_func_rpmatch=yes
ac_cv_func_select=yes
ac_cv_func_setenv=yes
ac_cv_func_stime=yes
ac_cv_func_strtod=yes
ac_cv_func_strtol=yes
ac_cv_func_strtoul=yes
ac_cv_func_strtoull=yes
ac_cv_func_tzset=yes
ac_cv_func_working_mktime=yes
ac_cv_header_SuiteSparse_config_h=yes
ac_cv_header_cublas_v2_h=yes
ac_cv_header_dlfcn_h=yes
ac_cv_header_float_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_limits_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stddef_h=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_time_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_time=yes
ac_cv_header_unistd_h=yes
ac_cv_host=x86_64-pc-linux-gnu
ac_cv_lib_cublas_cublasDgemm=no
ac_cv_lib_error_at_line=yes
ac_cv_lib_m_sqrt=yes
ac_cv_lib_rt_clock_gettime=yes
ac_cv_lib_suitesparseconfig_SuiteSparse_malloc=yes
ac_cv_member_struct_tm_tm_zone=yes
ac_cv_objext=o
ac_cv_path_EGREP='/bin/grep -E'
ac_cv_path_FGREP='/bin/grep -F'
ac_cv_path_GREP=/bin/grep
ac_cv_path_SED=/bin/sed
ac_cv_path_ac_pt_PKG_CONFIG=/usr/bin/pkg-config
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/bin/mkdir
ac_cv_prog_AR=x86_64-pc-linux-gnu-ar
ac_cv_prog_AWK=gawk
ac_cv_prog_CC=x86_64-pc-linux-gnu-gcc
ac_cv_prog_CPP='x86_64-pc-linux-gnu-gcc -E'
ac_cv_prog_OBJDUMP=x86_64-pc-linux-gnu-objdump
ac_cv_prog_RANLIB=x86_64-pc-linux-gnu-ranlib
ac_cv_prog_STRIP=x86_64-pc-linux-gnu-strip
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_prog_make_make_set=yes
ac_cv_struct_tm=time.h
ac_cv_type_mode_t=yes
ac_cv_type_off_t=yes
ac_cv_type_pid_t=yes
ac_cv_type_size_t=yes
ac_cv_type_ssize_t=yes
ac_cv_type_uid_t=yes
ac_cv_working_alloca_h=yes
am_cv_CC_dependencies_compiler_type=none
ax_cv_has_cublas=no
ax_cv_has_suitesparseconfig=yes
ax_cv_symbol=cublasDgemm
lt_cv_ar_at_file=@
lt_cv_archive_cmds_need_lc=no
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/x86_64-pc-linux-gnu/bin/ld
lt_cv_path_NM='/usr/bin/nm -B'
lt_cv_path_mainfest_tool=no
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_pic='-fPIC -DPIC'
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_compiler_static_works=yes
lt_cv_prog_gnu_ld=yes
lt_cv_sharedlib_from_linklib_cmd='printf %s\n'
lt_cv_shlibpath_overrides_runpath=yes
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[	 ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[	 ][	 ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/  {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/  {"\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/  {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/  {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/  {"lib\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''
lt_cv_sys_max_cmd_len=1572864
lt_cv_to_host_file_cmd=func_convert_file_noop
lt_cv_to_tool_file_cmd=func_convert_file_noop
pkg_cv_SUITESPARSECONFIG_CFLAGS=' '
pkg_cv_SUITESPARSECONFIG_LIBS='-lsuitesparseconfig  '

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /var/tmp/portage/sci-libs/cholmod-2.0.1/work/cholmod-2.0.1/config/missing --run aclocal-1.12'
ALLOCA=''
AMDEPBACKSLASH=''
AMDEP_FALSE=''
AMDEP_TRUE='#'
AMD_CFLAGS=''
AMD_LIBS=''
AMD_PC=''
AMTAR='$${TAR-tar}'
AR='x86_64-pc-linux-gnu-ar'
AUTOCONF='${SHELL} /var/tmp/portage/sci-libs/cholmod-2.0.1/work/cholmod-2.0.1/config/missing --run autoconf'
AUTOHEADER='${SHELL} /var/tmp/portage/sci-libs/cholmod-2.0.1/work/cholmod-2.0.1/config/missing --run autoheader'
AUTOMAKE='${SHELL} /var/tmp/portage/sci-libs/cholmod-2.0.1/work/cholmod-2.0.1/config/missing --run automake-1.12'
AWK='gawk'
BIBTEX=''
BLAS_CFLAGS=''
BLAS_LIBS=''
BLAS_PC=''
BUILD_DOCS_FALSE=''
BUILD_DOCS_TRUE='#'
CAMD_CFLAGS=''
CAMD_LIBS=''
CAMD_PC=''
CC='x86_64-pc-linux-gnu-gcc'
CCDEPMODE='depmode=none'
CCOLAMD_CFLAGS=''
CCOLAMD_LIBS=''
CCOLAMD_PC=''
CFLAGS='-march=native -O2 -pipe'
COLAMD_CFLAGS=''
COLAMD_LIBS=''
COLAMD_PC=''
CPP='x86_64-pc-linux-gnu-gcc -E'
CPPFLAGS=''
CUBLAS_CFLAGS='-I/opt/cuda/include'
CUBLAS_LIBS='-L/opt/cuda/lib64 -lcublas'
CUBLAS_PC=''
CYGPATH_W='echo'
DEFS=''
DEPDIR='.deps'
DLLTOOL='false'
DSYMUTIL=''
DUMPBIN=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/bin/grep -E'
EXEEXT=''
EXPAND=''
F77=''
FFLAGS='-O2 -pipe'
FGREP='/bin/grep -F'
FLIBS=''
GREP='/bin/grep'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
LAPACK_CFLAGS=''
LAPACK_LIBS=''
LAPACK_PC=''
LD='/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64'
LDFLAGS='-Wl,-O1 -Wl,--as-needed'
LIBOBJS=''
LIBS='-lrt -lm '
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIPO=''
LN_S='ln -s'
LTLIBOBJS=''
MAKEINFO='${SHELL} /var/tmp/portage/sci-libs/cholmod-2.0.1/work/cholmod-2.0.1/config/missing --run makeinfo'
MANIFEST_TOOL=':'
METIS_CFLAGS=''
METIS_LIBS=''
METIS_PC=''
MKDIR_P='/bin/mkdir -p'
NM='/usr/bin/nm -B'
NMEDIT=''
OBJDUMP='x86_64-pc-linux-gnu-objdump'
OBJEXT='o'
OTOOL64=''
OTOOL=''
PACKAGE='cholmod'
PACKAGE_BUGREPORT='[e-mail]'
PACKAGE_NAME='cholmod'
PACKAGE_STRING='cholmod 2.0.1'
PACKAGE_TARNAME='cholmod'
PACKAGE_URL=''
PACKAGE_VERSION='2.0.1'
PATH_SEPARATOR=':'
PC_LIBS=''
PDFLATEX=''
PKG_CONFIG='/usr/bin/pkg-config'
PKG_CONFIG_LIBDIR=''
PKG_CONFIG_PATH='/usr/lib64/pkgconfig'
POW_LIB=''
RANLIB='x86_64-pc-linux-gnu-ranlib'
SED='/bin/sed'
SET_MAKE=''
SHELL='/bin/sh'
STRIP='x86_64-pc-linux-gnu-strip'
SUITESPARSECONFIG_CFLAGS=' '
SUITESPARSECONFIG_LIBS='-lsuitesparseconfig  '
SUITESPARSECONFIG_PC='suitesparseconfig'
VERSION='2.0.1'
WITH_CHECK_FALSE=''
WITH_CHECK_TRUE=''
WITH_CHOLESKY_FALSE=''
WITH_CHOLESKY_TRUE=''
WITH_MATRIXOPS_FALSE=''
WITH_MATRIXOPS_TRUE=''
WITH_MODIFY_FALSE=''
WITH_MODIFY_TRUE=''
WITH_PARTITION_FALSE=''
WITH_PARTITION_TRUE=''
WITH_SUPERNODAL_FALSE=''
WITH_SUPERNODAL_TRUE=''
ac_ct_AR=''
ac_ct_CC=''
ac_ct_DUMPBIN=''
ac_ct_F77=''
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE=''
am__fastdepCC_FALSE=''
am__fastdepCC_TRUE='#'
am__include='include'
am__isrc=' -I$(srcdir)'
am__leading_dot='.'
am__nodep=''
am__quote=''
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
bindir='${exec_prefix}/bin'
build='x86_64-pc-linux-gnu'
build_alias='x86_64-pc-linux-gnu'
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='pc'
datadir='/usr/share'
datarootdir='${prefix}/share'
docdir='/usr/share/doc/cholmod-2.0.1'
dvidir='${docdir}'
exec_prefix='NONE'
host='x86_64-pc-linux-gnu'
host_alias='x86_64-pc-linux-gnu'
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='pc'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='/usr/share/info'
install_sh='${SHELL} /var/tmp/portage/sci-libs/cholmod-2.0.1/work/cholmod-2.0.1/config/install-sh'
libdir='/usr/lib64'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='/var/lib'
mandir='/usr/share/man'
mkdir_p='$(MKDIR_P)'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/usr'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME "cholmod"
#define PACKAGE_TARNAME "cholmod"
#define PACKAGE_VERSION "2.0.1"
#define PACKAGE_STRING "cholmod 2.0.1"
#define PACKAGE_BUGREPORT "[e-mail]"
#define PACKAGE_URL ""
#define PACKAGE "cholmod"
#define VERSION "2.0.1"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define HAVE_FLOAT_H 1
#define HAVE_LIMITS_H 1
#define HAVE_STDDEF_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_STRUCT_TM_TM_ZONE 1
#define HAVE_TM_ZONE 1
#define HAVE_ALLOCA_H 1
#define HAVE_ALLOCA 1
#define HAVE_STDLIB_H 1
#define HAVE_MALLOC 1
#define TIME_WITH_SYS_TIME 1
#define HAVE_SYS_TIME_H 1
#define HAVE_UNISTD_H 1
#define HAVE_ALARM 1
#define HAVE_STDLIB_H 1
#define HAVE_REALLOC 1
#define HAVE_ATEXIT 1
#define HAVE_LOCALTIME_R 1
#define HAVE_MBLEN 1
#define HAVE_PUTENV 1
#define HAVE_REALPATH 1
#define HAVE_RPMATCH 1
#define HAVE_SELECT 1
#define HAVE_SETENV 1
#define HAVE_STIME 1
#define HAVE_STRTOL 1
#define HAVE_STRTOUL 1
#define HAVE_STRTOULL 1
#define HAVE_TZSET 1
#define HAVE_LIBM 1
#define HAVE_LIBRT 1
#define HAVE_SUITESPARSECONFIG 1

configure: exit 1