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Gentoo's Bugzilla – Attachment 333782 Details for
Bug 449320
sci-libs/cholmod-2.0.1 - configure: .../temp/ccKrajc0.o: In function `main': conftest.c:(.text+0x7): undefined reference to `cublasDgemm'
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/var/tmp/portage/sci-libs/cholmod-2.0.1/temp/build.log
build.log (text/plain), 9.70 KB, created by
Luis Ferreira
on 2012-12-30 16:28:01 UTC
(
hide
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Description:
/var/tmp/portage/sci-libs/cholmod-2.0.1/temp/build.log
Filename:
MIME Type:
Creator:
Luis Ferreira
Created:
2012-12-30 16:28:01 UTC
Size:
9.70 KB
patch
obsolete
>[32;01m * [39;49;00mPackage: sci-libs/cholmod-2.0.1 >[32;01m * [39;49;00mRepository: gentoo >[32;01m * [39;49;00mMaintainer: sci@gentoo.org >[32;01m * [39;49;00mUSE: amd64 cuda elibc_glibc kernel_linux metis supernodal userland_GNU >[32;01m * [39;49;00mFEATURES: sandbox >>>> Unpacking source... >>>> Unpacking cholmod-2.0.1.tar.gz to /var/tmp/portage/sci-libs/cholmod-2.0.1/work >>>> Source unpacked in /var/tmp/portage/sci-libs/cholmod-2.0.1/work >>>> Preparing source in /var/tmp/portage/sci-libs/cholmod-2.0.1/work/cholmod-2.0.1 ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-libs/cholmod-2.0.1/work/cholmod-2.0.1 ... >>>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/cholmod-2.0.1/work/cholmod-2.0.1_build" > * econf: updating cholmod-2.0.1/config/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating cholmod-2.0.1/config/config.sub with /usr/share/gnuconfig/config.sub >/var/tmp/portage/sci-libs/cholmod-2.0.1/work/cholmod-2.0.1/configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 --disable-dependency-tracking --docdir=/usr/share/doc/cholmod-2.0.1 --enable-shared --disable-static --with-blas=-lblas --with-lapack=-llapack -lblas --without-doc --with-modify --with-matrixops --with-partition --with-supernodal --with-cuda --with-cublas-libs=-L/opt/cuda/lib64 -lcublas --with-cublas-cflags=-I/opt/cuda/include >checking for a BSD-compatible install... /usr/bin/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking how to print strings... printf >checking for style of include used by make... GNU >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking dependency style of x86_64-pc-linux-gnu-gcc... none >checking for a sed that does not truncate output... /bin/sed >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B >checking the name lister (/usr/bin/nm -B) interface... BSD nm >checking whether ln -s works... yes >checking the maximum length of command line arguments... 1572864 >checking whether the shell understands some XSI constructs... yes >checking whether the shell understands "+="... yes >checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop >checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop >checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r >checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-dlltool... no >checking for dlltool... no >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar >checking for archiver @FILE support... @ >checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok >checking for sysroot... no >checking for x86_64-pc-linux-gnu-mt... no >checking for mt... no >checking if : is a manifest tool... no >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking for x86_64-pc-linux-gnu-gcc... (cached) x86_64-pc-linux-gnu-gcc >checking whether we are using the GNU C compiler... (cached) yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... (cached) yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... (cached) none needed >checking dependency style of x86_64-pc-linux-gnu-gcc... (cached) none >checking float.h usability... yes >checking float.h presence... yes >checking for float.h... yes >checking limits.h usability... yes >checking limits.h presence... yes >checking for limits.h... yes >checking stddef.h usability... yes >checking stddef.h presence... yes >checking for stddef.h... yes >checking for stdlib.h... (cached) yes >checking for string.h... (cached) yes >checking for uid_t in sys/types.h... yes >checking for int32_t... yes >checking for mode_t... yes >checking for off_t... yes >checking for pid_t... yes >checking for size_t... yes >checking for ssize_t... yes >checking whether struct tm is in sys/time.h or time.h... time.h >checking for struct tm.tm_zone... yes >checking for working alloca.h... yes >checking for alloca... yes >checking for error_at_line... yes >checking for stdlib.h... (cached) yes >checking for GNU libc compatible malloc... yes >checking whether time.h and sys/time.h may both be included... yes >checking for sys/time.h... yes >checking for unistd.h... (cached) yes >checking for alarm... yes >checking for working mktime... yes >checking for stdlib.h... (cached) yes >checking for GNU libc compatible realloc... yes >checking for working strtod... yes >checking for atexit... yes >checking for localtime_r... yes >checking for mblen... yes >checking for putenv... yes >checking for realpath... yes >checking for rpmatch... yes >checking for select... yes >checking for setenv... yes >checking for stime... yes >checking for strtol... yes >checking for strtoul... yes >checking for strtoull... yes >checking for tzset... yes >checking for sqrt in -lm... yes >checking for clock_gettime in -lrt... yes >checking for x86_64-pc-linux-gnu-pkg-config... no >checking for pkg-config... /usr/bin/pkg-config >checking pkg-config is at least version 0.9.0... yes >checking for SUITESPARSECONFIG... yes >checking SuiteSparse_config.h usability... yes >checking SuiteSparse_config.h presence... yes >checking for SuiteSparse_config.h... yes >checking for SuiteSparse_malloc in -lsuitesparseconfig... yes >checking whether to build user guide... no >checking cublas_v2.h usability... yes >checking cublas_v2.h presence... yes >checking for cublas_v2.h... yes >checking for cublasDgemm in -lcublas... no >configure: error: Could not find cuda blas library > >!!! Please attach the following file when seeking support: >!!! /var/tmp/portage/sci-libs/cholmod-2.0.1/work/cholmod-2.0.1_build/config.log > [31;01m*[0m ERROR: sci-libs/cholmod-2.0.1 failed (configure phase): > [31;01m*[0m econf failed > [31;01m*[0m > [31;01m*[0m Call stack: > [31;01m*[0m ebuild.sh, line 93: Called src_configure > [31;01m*[0m environment, line 3115: Called autotools-utils_src_configure > [31;01m*[0m environment, line 648: Called econf '--docdir=/usr/share/doc/cholmod-2.0.1' '--enable-shared' '--disable-static' '--with-blas=-lblas ' '--with-lapack=-llapack -lblas ' '--without-doc' '--with-modify' '--with-matrixops' '--with-partition' '--with-supernodal' '--with-cuda' '--with-cublas-libs=-L/opt/cuda/lib64 -lcublas' '--with-cublas-cflags=-I/opt/cuda/include' > [31;01m*[0m phase-helpers.sh, line 501: Called die > [31;01m*[0m The specific snippet of code: > [31;01m*[0m die "econf failed" > [31;01m*[0m > [31;01m*[0m If you need support, post the output of `emerge --info '=sci-libs/cholmod-2.0.1'`, > [31;01m*[0m the complete build log and the output of `emerge -pqv '=sci-libs/cholmod-2.0.1'`. > [31;01m*[0m The complete build log is located at '/var/tmp/sci-libs:cholmod-2.0.1:20121230-161432.log'. > [31;01m*[0m For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-libs/cholmod-2.0.1/temp/build.log'. > [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-libs/cholmod-2.0.1/temp/environment'. > [31;01m*[0m Working directory: '/var/tmp/portage/sci-libs/cholmod-2.0.1/work/cholmod-2.0.1_build' > [31;01m*[0m S: '/var/tmp/portage/sci-libs/cholmod-2.0.1/work/cholmod-2.0.1' >
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bug 449320
: 333782 |
333798