# Copyright 1999-2004 Gentoo Technologies, Inc.
# Distributed under the terms of the GNU General Public License v2
# $Header:$

inherit java-pkg

DESCRIPTION="Reads and writes nucleic/protein sequences in various formats."
SRC_URI="http://iubio.bio.indiana.edu/soft/molbio/readseq/version2/readseq-2.1.19-src.zip"
HOMEPAGE="http://iubio.bio.indiana.edu/soft/molbio/readseq/"
LICENSE="public-domain"

KEYWORDS="~x86"
SLOT="0"
IUSE="doc"

DEPEND="${RDEPEND}
	virtual/jdk
	dev-java/ant"

RDEPEND="virtual/jre
	virtual/x11"

S=${WORKDIR}

doclasses() {
	for file in ${1}/*; do
		if [ -d ${PWD}/${file} ]; then
			doclasses ${file}
		else
			JARDESTTREE=lib/${1}
			java-pkg_doclass ${file}
		fi
	done
}

dodocs() {
	for file in ${1}/*; do
		if [ -d ${PWD}/${file} ]; then
			dodocs ${file}
		else
			insinto /usr/share/doc/${P}/html/${1}
			doins ${file}
		fi
	done
}

src_compile() {
	ant jar prepare javadoc
}

src_install() {
	cd build
	java-pkg_dojar readseq.jar
	doclasses classes
	cd ..
	dobin ${FILESDIR}/${PN}
	insinto /usr/share/doc/${P}/formats
	doins rez/*
	use doc && cd dist/docs; dodocs api; cd ../..
}