build.log

umfpack_build.log (text/plain), 14.38 KB, created by Branko Grubic on 2012-11-20 09:20:58 UTC

[32;01m * [39;49;00mPackage:    sci-libs/umfpack-5.6.1
[32;01m * [39;49;00mRepository: gentoo
[32;01m * [39;49;00mMaintainer: [e-mail]
[32;01m * [39;49;00mUSE:        amd64 elibc_glibc kernel_linux multilib userland_GNU
[32;01m * [39;49;00mFEATURES:   sandbox
>>> Unpacking source...
>>> Unpacking umfpack-5.6.1.tar.gz to /var/tmp/portage/sci-libs/umfpack-5.6.1/work
>>> Source unpacked in /var/tmp/portage/sci-libs/umfpack-5.6.1/work
>>> Preparing source in /var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1 ...
 [32;01m*[0m Running elibtoolize in: umfpack-5.6.1/config/
 [32;01m*[0m   Applying portage/1.2.0 patch ...
 [32;01m*[0m   Applying sed/1.5.6 patch ...
 [32;01m*[0m   Applying as-needed/2.4.2 patch ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1 ...
/var/tmp/portage/sci-libs/umfpack-5.6.1/temp/environment: line 3017: local: `myeconfargs+': not a valid identifier
>>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1_build"
 * econf: updating umfpack-5.6.1/config/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating umfpack-5.6.1/config/config.sub with /usr/share/gnuconfig/config.sub
/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 --disable-dependency-tracking --docdir=/usr/share/doc/umfpack-5.6.1 --enable-shared --disable-static --with-blas=-L/usr/lib64/blas/reference -lblas   --without-doc --without-cholmod
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking how to print strings... printf
checking for style of include used by make... GNU
checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking dependency style of x86_64-pc-linux-gnu-gcc... none
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump
checking how to recognize dependent libraries... pass_all
checking for x86_64-pc-linux-gnu-dlltool... no
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checking how to associate runtime and link libraries... printf %s\n
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checking for archiver @FILE support... @
checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip
checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib
checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok
checking for sysroot... no
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checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
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checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC
checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes
checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for x86_64-pc-linux-gnu-gcc... (cached) x86_64-pc-linux-gnu-gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... (cached) yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... (cached) none needed
checking dependency style of x86_64-pc-linux-gnu-gcc... (cached) none
checking float.h usability... yes
checking float.h presence... yes
checking for float.h... yes
checking for string.h... (cached) yes
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checking for GNU libc compatible malloc... yes
checking for pow in -lm... yes
checking whether to build user guide... no
checking for x86_64-pc-linux-gnu-pkg-config... no
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for SUITESPARSECONFIG... yes
checking SuiteSparse_config.h usability... yes
checking SuiteSparse_config.h presence... yes
checking for SuiteSparse_config.h... yes
checking for SuiteSparse_malloc in -lsuitesparseconfig... yes
checking for AMD... yes
checking amd.h usability... yes
checking amd.h presence... yes
checking for amd.h... yes
checking for amd_aat in -lamd... yes
checking for x86_64-pc-linux-gnu-g77... no
checking for x86_64-pc-linux-gnu-xlf... no
checking for x86_64-pc-linux-gnu-f77... no
checking for x86_64-pc-linux-gnu-frt... no
checking for x86_64-pc-linux-gnu-pgf77... no
checking for x86_64-pc-linux-gnu-cf77... no
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checking for x86_64-pc-linux-gnu-fl32... no
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checking for x86_64-pc-linux-gnu-pgf90... no
checking for x86_64-pc-linux-gnu-pghpf... no
checking for x86_64-pc-linux-gnu-epcf90... no
checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC
checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes
checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes
checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes
checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking how to get verbose linking output from x86_64-pc-linux-gnu-gfortran... -v
checking for Fortran 77 libraries of x86_64-pc-linux-gnu-gfortran...  -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../.. -lgfortran -lm -lquadmath
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking for BLAS... yes
checking whether to enable fortran tests... no
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Demo/Makefile
config.status: creating Doc/Makefile
config.status: creating Include/Makefile
config.status: creating Source/Makefile
config.status: creating umfpack.pc
config.status: creating Makefile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1 ...
>>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1_build"
make -j3 
make  all-recursive
make[1]: Entering directory `/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1_build'
Making all in Source
make[2]: Entering directory `/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1_build/Source'
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source -I..  -I/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Include    -O2 -pipe -march=native -DDINT -c /var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source/umf_analyze.c -o umf_i_analyze.lo
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source -I..  -I/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Include    -O2 -pipe -march=native -DDINT -c /var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source/umf_apply_order.c -o umf_i_apply_order.lo
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source -I..  -I/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Include    -O2 -pipe -march=native -DDINT -c /var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source/umf_colamd.c -o umf_i_colamd.lo
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source -I.. -I/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Include -O2 -pipe -march=native -DDINT -c /var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source/umf_colamd.c  -fPIC -DPIC -o .libs/umf_i_colamd.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source -I.. -I/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Include -O2 -pipe -march=native -DDINT -c /var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source/umf_apply_order.c  -fPIC -DPIC -o .libs/umf_i_apply_order.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source -I.. -I/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Include -O2 -pipe -march=native -DDINT -c /var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source/umf_analyze.c  -fPIC -DPIC -o .libs/umf_i_analyze.o
In file included from /var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source/umf_internal.h:118:0,
                 from /var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source/umf_colamd.c:394:
/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source/umf_config.h:143:26: fatal error: cholmod_blas.h: No such file or directory
compilation terminated.
make[2]: *** [umf_i_colamd.lo] Error 1
make[2]: *** Waiting for unfinished jobs....
In file included from /var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source/umf_internal.h:118:0,
                 from /var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source/umf_apply_order.c:14:
/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source/umf_config.h:143:26: fatal error: cholmod_blas.h: No such file or directory
compilation terminated.
In file included from /var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source/umf_internal.h:118:0,
                 from /var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source/umf_analyze.c:28:
/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source/umf_config.h:143:26: fatal error: cholmod_blas.h: No such file or directory
compilation terminated.
make[2]: *** [umf_i_apply_order.lo] Error 1
make[2]: *** [umf_i_analyze.lo] Error 1
make[2]: Leaving directory `/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1_build/Source'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1_build'
make: *** [all] Error 2
 [31;01m*[0m ERROR: sci-libs/umfpack-5.6.1 failed (compile phase):
 [31;01m*[0m   emake failed
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the output of `emerge --info '=sci-libs/umfpack-5.6.1'`,
 [31;01m*[0m the complete build log and the output of `emerge -pqv '=sci-libs/umfpack-5.6.1'`.
 [31;01m*[0m The complete build log is located at '/var/tmp/portage/sci-libs/umfpack-5.6.1/temp/build.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-libs/umfpack-5.6.1/temp/environment'.
 [31;01m*[0m Working directory: '/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1_build'
 [31;01m*[0m S: '/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1'