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Gentoo's Bugzilla – Attachment 330030 Details for
Bug 444002
sci-libs/umfpack-5.6.1 - .../work/umfpack-5.6.1/Source/umf_config.h:143:26: fatal error: cholmod_blas.h: No such file or directory
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build.log
umfpack_build.log (text/plain), 14.38 KB, created by
Branko Grubic
on 2012-11-20 09:20:58 UTC
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Description:
build.log
Filename:
MIME Type:
Creator:
Branko Grubic
Created:
2012-11-20 09:20:58 UTC
Size:
14.38 KB
patch
obsolete
>[32;01m * [39;49;00mPackage: sci-libs/umfpack-5.6.1 >[32;01m * [39;49;00mRepository: gentoo >[32;01m * [39;49;00mMaintainer: sci@gentoo.org >[32;01m * [39;49;00mUSE: amd64 elibc_glibc kernel_linux multilib userland_GNU >[32;01m * [39;49;00mFEATURES: sandbox >>>> Unpacking source... >>>> Unpacking umfpack-5.6.1.tar.gz to /var/tmp/portage/sci-libs/umfpack-5.6.1/work >>>> Source unpacked in /var/tmp/portage/sci-libs/umfpack-5.6.1/work >>>> Preparing source in /var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1 ... > [32;01m*[0m Running elibtoolize in: umfpack-5.6.1/config/ > [32;01m*[0m Applying portage/1.2.0 patch ... > [32;01m*[0m Applying sed/1.5.6 patch ... > [32;01m*[0m Applying as-needed/2.4.2 patch ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1 ... >/var/tmp/portage/sci-libs/umfpack-5.6.1/temp/environment: line 3017: local: `myeconfargs+': not a valid identifier >>>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1_build" > * econf: updating umfpack-5.6.1/config/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating umfpack-5.6.1/config/config.sub with /usr/share/gnuconfig/config.sub >/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 --disable-dependency-tracking --docdir=/usr/share/doc/umfpack-5.6.1 --enable-shared --disable-static --with-blas=-L/usr/lib64/blas/reference -lblas --without-doc --without-cholmod >checking for a BSD-compatible install... /usr/bin/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking how to print strings... printf >checking for style of include used by make... GNU >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking dependency style of x86_64-pc-linux-gnu-gcc... none >checking for a sed that does not truncate output... /bin/sed >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B >checking the name lister (/usr/bin/nm -B) interface... BSD nm >checking whether ln -s works... yes >checking the maximum length of command line arguments... 1572864 >checking whether the shell understands some XSI constructs... yes >checking whether the shell understands "+="... yes >checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop >checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop >checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r >checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-dlltool... no >checking for dlltool... no >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar >checking for archiver @FILE support... @ >checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok >checking for sysroot... no >checking for x86_64-pc-linux-gnu-mt... no >checking for mt... no >checking if : is a manifest tool... no >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking for x86_64-pc-linux-gnu-gcc... (cached) x86_64-pc-linux-gnu-gcc >checking whether we are using the GNU C compiler... (cached) yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... (cached) yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... (cached) none needed >checking dependency style of x86_64-pc-linux-gnu-gcc... (cached) none >checking float.h usability... yes >checking float.h presence... yes >checking for float.h... yes >checking for string.h... (cached) yes >checking for stdlib.h... (cached) yes >checking for size_t... yes >checking for error_at_line... yes >checking for stdlib.h... (cached) yes >checking for GNU libc compatible malloc... yes >checking for pow in -lm... yes >checking whether to build user guide... no >checking for x86_64-pc-linux-gnu-pkg-config... no >checking for pkg-config... /usr/bin/pkg-config >checking pkg-config is at least version 0.9.0... yes >checking for SUITESPARSECONFIG... yes >checking SuiteSparse_config.h usability... yes >checking SuiteSparse_config.h presence... yes >checking for SuiteSparse_config.h... yes >checking for SuiteSparse_malloc in -lsuitesparseconfig... yes >checking for AMD... yes >checking amd.h usability... yes >checking amd.h presence... yes >checking for amd.h... yes >checking for amd_aat in -lamd... yes >checking for x86_64-pc-linux-gnu-g77... no >checking for x86_64-pc-linux-gnu-xlf... no >checking for x86_64-pc-linux-gnu-f77... no >checking for x86_64-pc-linux-gnu-frt... no >checking for x86_64-pc-linux-gnu-pgf77... no >checking for x86_64-pc-linux-gnu-cf77... no >checking for x86_64-pc-linux-gnu-fort77... no >checking for x86_64-pc-linux-gnu-fl32... no >checking for x86_64-pc-linux-gnu-af77... no >checking for x86_64-pc-linux-gnu-xlf90... no >checking for x86_64-pc-linux-gnu-f90... no >checking for x86_64-pc-linux-gnu-pgf90... no >checking for x86_64-pc-linux-gnu-pghpf... no >checking for x86_64-pc-linux-gnu-epcf90... no >checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran >checking whether we are using the GNU Fortran 77 compiler... yes >checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC >checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes >checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes >checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... (cached) GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking how to get verbose linking output from x86_64-pc-linux-gnu-gfortran... -v >checking for Fortran 77 libraries of x86_64-pc-linux-gnu-gfortran... -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../.. -lgfortran -lm -lquadmath >checking for dummy main to link with Fortran 77 libraries... none >checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore >checking for BLAS... yes >checking whether to enable fortran tests... no >checking that generated files are newer than configure... done >configure: creating ./config.status >config.status: creating Demo/Makefile >config.status: creating Doc/Makefile >config.status: creating Include/Makefile >config.status: creating Source/Makefile >config.status: creating umfpack.pc >config.status: creating Makefile >config.status: creating config.h >config.status: executing depfiles commands >config.status: executing libtool commands >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1 ... >>>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1_build" >make -j3 >make all-recursive >make[1]: Entering directory `/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1_build' >Making all in Source >make[2]: Entering directory `/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1_build/Source' >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source -I.. -I/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Include -O2 -pipe -march=native -DDINT -c /var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source/umf_analyze.c -o umf_i_analyze.lo >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source -I.. -I/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Include -O2 -pipe -march=native -DDINT -c /var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source/umf_apply_order.c -o umf_i_apply_order.lo >/bin/sh ../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source -I.. -I/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Include -O2 -pipe -march=native -DDINT -c /var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source/umf_colamd.c -o umf_i_colamd.lo >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source -I.. -I/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Include -O2 -pipe -march=native -DDINT -c /var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source/umf_colamd.c -fPIC -DPIC -o .libs/umf_i_colamd.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source -I.. -I/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Include -O2 -pipe -march=native -DDINT -c /var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source/umf_apply_order.c -fPIC -DPIC -o .libs/umf_i_apply_order.o >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source -I.. -I/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Include -O2 -pipe -march=native -DDINT -c /var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source/umf_analyze.c -fPIC -DPIC -o .libs/umf_i_analyze.o >In file included from /var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source/umf_internal.h:118:0, > from /var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source/umf_colamd.c:394: >/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source/umf_config.h:143:26: fatal error: cholmod_blas.h: No such file or directory >compilation terminated. >make[2]: *** [umf_i_colamd.lo] Error 1 >make[2]: *** Waiting for unfinished jobs.... >In file included from /var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source/umf_internal.h:118:0, > from /var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source/umf_apply_order.c:14: >/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source/umf_config.h:143:26: fatal error: cholmod_blas.h: No such file or directory >compilation terminated. >In file included from /var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source/umf_internal.h:118:0, > from /var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source/umf_analyze.c:28: >/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1/Source/umf_config.h:143:26: fatal error: cholmod_blas.h: No such file or directory >compilation terminated. >make[2]: *** [umf_i_apply_order.lo] Error 1 >make[2]: *** [umf_i_analyze.lo] Error 1 >make[2]: Leaving directory `/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1_build/Source' >make[1]: *** [all-recursive] Error 1 >make[1]: Leaving directory `/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1_build' >make: *** [all] Error 2 > [31;01m*[0m ERROR: sci-libs/umfpack-5.6.1 failed (compile phase): > [31;01m*[0m emake failed > [31;01m*[0m > [31;01m*[0m If you need support, post the output of `emerge --info '=sci-libs/umfpack-5.6.1'`, > [31;01m*[0m the complete build log and the output of `emerge -pqv '=sci-libs/umfpack-5.6.1'`. > [31;01m*[0m The complete build log is located at '/var/tmp/portage/sci-libs/umfpack-5.6.1/temp/build.log'. > [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-libs/umfpack-5.6.1/temp/environment'. > [31;01m*[0m Working directory: '/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1_build' > [31;01m*[0m S: '/var/tmp/portage/sci-libs/umfpack-5.6.1/work/umfpack-5.6.1'
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bug 444002
: 330030 |
330034