/var/tmp/portage/dev-lang/gdl-0.9.2-r1/temp/build.log

build.log (text/plain), 6.43 KB, created by Juergen Rose on 2012-06-19 16:01:17 UTC

[32;01m * [39;49;00mPackage:    dev-lang/gdl-0.9.2-r1
[32;01m * [39;49;00mRepository: gentoo
[32;01m * [39;49;00mMaintainer: [e-mail]
[32;01m * [39;49;00mUSE:        X amd64 elibc_glibc fftw hdf hdf5 imagemagick kernel_linux multilib netcdf openmp postscript proj python userland_GNU wxwidgets
[32;01m * [39;49;00mFEATURES:   sandbox
>>> Unpacking source...
>>> Unpacking gdl-0.9.2.tar.gz to /var/tmp/portage/dev-lang/gdl-0.9.2-r1/work
>>> Source unpacked in /var/tmp/portage/dev-lang/gdl-0.9.2-r1/work
>>> Preparing source in /var/tmp/portage/dev-lang/gdl-0.9.2-r1/work/gdl-0.9.2 ...
 [32;01m*[0m Applying 0.9.2-antlr.patch ...
[A[137C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying 0.9.2-numpy.patch ...
[A[137C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying 0.9.2-proj4.patch ...
[A[137C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying 0.9.2-include.patch ...
[A[137C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying 0.9.2-tests.patch ...
[A[137C [34;01m[ [32;01mok[34;01m ][0m
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/dev-lang/gdl-0.9.2-r1/work/gdl-0.9.2 ...
>>> Working in BUILD_DIR: "/var/tmp/portage/dev-lang/gdl-0.9.2-r1/work/gdl-0.9.2_build"
cmake --no-warn-unused-cli -C /var/tmp/portage/dev-lang/gdl-0.9.2-r1/work/gdl-0.9.2_build/gentoo_common_config.cmake -DCMAKE_INSTALL_PREFIX=/usr -DMPICH=OFF -DBUNDLED_ANTLR=OFF -DX11=ON -Dfftw=ON -DFFTW=ON -DFftw=ON -Dgrib=OFF -DGRIB=OFF -DGrib=OFF -Dgshhs=OFF -DGSHHS=OFF -DGshhs=OFF -Dhdf=ON -DHDF=ON -DHdf=ON -Dhdf5=ON -DHDF5=ON -DHdf5=ON -DMAGICK=ON -Dnetcdf=ON -DNETCDF=ON -DNetcdf=ON -Dopenmp=ON -DOPENMP=ON -DOpenmp=ON -DLIBPROJ4=ON -DPSLIB=ON -Dudunits=OFF -DUDUNITS=OFF -DUdunits=OFF -Dwxwidgets=ON -DWXWIDGETS=ON -DWxwidgets=ON -DPYTHON_MODULE=OFF -DPYTHON=OFF -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_INSTALL_DO_STRIP=OFF -DCMAKE_USER_MAKE_RULES_OVERRIDE=/var/tmp/portage/dev-lang/gdl-0.9.2-r1/work/gdl-0.9.2_build/gentoo_rules.cmake  /var/tmp/portage/dev-lang/gdl-0.9.2-r1/work/gdl-0.9.2
Not searching for unused variables given on the command line.
loading initial cache file /var/tmp/portage/dev-lang/gdl-0.9.2-r1/work/gdl-0.9.2_build/gentoo_common_config.cmake
Re-run cmake no build system arguments
-- The C compiler identification is GNU 4.6.3
-- The CXX compiler identification is GNU 4.6.3
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/mpicxx
-- Check for working CXX compiler: /usr/bin/mpicxx -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.26") 
-- Looking for dlopen in dl
-- Looking for dlopen in dl - found
-- Looking for malloc_zone_statistics
-- Looking for malloc_zone_statistics - not found
-- Looking for sbrk
-- Looking for sbrk - found
-- Looking for mallinfo
-- Looking for mallinfo - found
-- Looking for malloc.h
-- Looking for malloc.h - found
-- Looking for malloc/malloc.h
-- Looking for malloc/malloc.h - not found
-- Looking for locale.h
-- Looking for locale.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stdlib.h
-- Looking for stdlib.h - found
-- Looking for string.h
-- Looking for string.h - found
-- Looking for strings.h
-- Looking for strings.h - found
-- Looking for sys/stat.h
-- Looking for sys/stat.h - found
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for unistd.h
-- Looking for unistd.h - found
-- Looking for ext/stdio_filebuf.h
-- Looking for ext/stdio_filebuf.h - not found
-- Looking for dlfcn.h
-- Looking for dlfcn.h - found
-- Looking for inttypes.h
-- Looking for inttypes.h - found
-- Looking for nexttoward in m
-- Looking for nexttoward in m - found
-- Looking for mpi.h
-- Looking for mpi.h - found
-- Looking for wsyncup in /usr/lib64/libcurses.so
-- Looking for wsyncup in /usr/lib64/libcurses.so - found
-- Looking for rl_get_screen_size in /usr/lib64/libreadline.so;/usr/lib64/libhistory.so
-- Looking for rl_get_screen_size in /usr/lib64/libreadline.so;/usr/lib64/libhistory.so - found
-- Try OpenMP C flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Try OpenMP CXX flag = [-fopenmp]
-- Performing Test OpenMP_FLAG_DETECTED
-- Performing Test OpenMP_FLAG_DETECTED - Success
-- Found PLPLOT: /usr/lib64/libplplotd.so;/usr/lib64/libplplotcxxd.so  
-- Looking for plGetDrvDir in /usr/lib64/libplplotd.so;/usr/lib64/libplplotcxxd.so
-- Looking for plGetDrvDir in /usr/lib64/libplplotd.so;/usr/lib64/libplplotcxxd.so - not found
-- checking for module 'netcdf'
--   found netcdf, version 4.2
-- Found NETCDF: netcdf  
-- Looking for C++ include netcdfcpp.h
-- Looking for C++ include netcdfcpp.h - not found
CMake Error at CMakeLists.txt:333 (message):
  NetCDF installation seems not to be usable.

  This suggests a conflicting netCDF-HDF4 installation e.g.

  - Uninstalling HDF4 after installation of NetCDF.

  - Installing NetCDF before HDF4.


-- Configuring incomplete, errors occurred!
 [31;01m*[0m ERROR: dev-lang/gdl-0.9.2-r1 failed (configure phase):
 [31;01m*[0m   cmake failed
 [31;01m*[0m 
 [31;01m*[0m Call stack:
 [31;01m*[0m     ebuild.sh, line   85:  Called src_configure
 [31;01m*[0m   environment, line 5637:  Called configuration '-DPYTHON_MODULE=OFF' '-DPYTHON=OFF'
 [31;01m*[0m   environment, line 5635:  Called cmake-utils_src_configure
 [31;01m*[0m   environment, line 1525:  Called _execute_optionaly 'src_configure'
 [31;01m*[0m   environment, line  556:  Called enable_cmake-utils_src_configure
 [31;01m*[0m   environment, line 1826:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m       "${CMAKE_BINARY}" "${cmakeargs[@]}" "${CMAKE_USE_DIR}" || die "cmake failed";
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the output of `emerge --info '=dev-lang/gdl-0.9.2-r1'`,
 [31;01m*[0m the complete build log and the output of `emerge -pqv '=dev-lang/gdl-0.9.2-r1'`.
 [31;01m*[0m The complete build log is located at '/var/tmp/portage/dev-lang/gdl-0.9.2-r1/temp/build.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/dev-lang/gdl-0.9.2-r1/temp/environment'.
 [31;01m*[0m Working directory: '/var/tmp/portage/dev-lang/gdl-0.9.2-r1/work/gdl-0.9.2_build'
 [31;01m*[0m S: '/var/tmp/portage/dev-lang/gdl-0.9.2-r1/work/gdl-0.9.2'