build.log

vigra-1.7.1-r1_build.log (text/plain), 39.23 KB, created by Nikoli on 2012-01-29 20:05:55 UTC

[32;01m * [39;49;00mPackage:    media-libs/vigra-1.7.1-r1
[32;01m * [39;49;00mRepository: gentoo
[32;01m * [39;49;00mMaintainer: [e-mail] [e-mail]
[32;01m * [39;49;00mUSE:        amd64 elibc_glibc fftw hdf5 jpeg kernel_linux multilib png python test tiff userland_GNU
[32;01m * [39;49;00mFEATURES:   sandbox test userpriv usersandbox
>>> Unpacking source...
>>> Unpacking vigra-1.7.1-src.tar.gz to /var/tmp/portage/media-libs/vigra-1.7.1-r1/work
>>> Source unpacked in /var/tmp/portage/media-libs/vigra-1.7.1-r1/work
>>> Preparing source in /var/tmp/portage/media-libs/vigra-1.7.1-r1/work/vigra-1.7.1 ...
 [32;01m*[0m Applying 1.7.1-png-1.5.patch ...
[A[118C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying 1.7.1-automagicness.patch ...
[A[118C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying 1.7.1-hdf5.patch ...
[A[118C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying 1.7.1-gcc4.6.patch ...
[A[118C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying 1.7.1-numpy_doc.patch ...
[A[118C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying 1.7.1-fix-tests.patch ...
[A[118C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying 1.7.1-fix-nosetest.patch ...
[A[118C [34;01m[ [32;01mok[34;01m ][0m
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/media-libs/vigra-1.7.1-r1/work/vigra-1.7.1 ...
>>> Working in BUILD_DIR: "/var/tmp/portage/media-libs/vigra-1.7.1-r1/work/vigra-1.7.1"
>>> Working in BUILD_DIR: "/var/tmp/portage/media-libs/vigra-1.7.1-r1/work/vigra-1.7.1"
cmake --no-warn-unused-cli -C /var/tmp/portage/media-libs/vigra-1.7.1-r1/temp/gentoo_common_config.cmake -DCMAKE_INSTALL_PREFIX=/usr -DDOCDIR=/var/tmp/portage/media-libs/vigra-1.7.1-r1/work/vigra-1.7.1/doc -DLIBDIR_SUFFIX=64 -DDOCINSTALL=share/doc/vigra-1.7.1-r1 -DWITH_VALGRIND=OFF -DWITH_VIGRANUMPY=ON -DWITH_png=ON -DWITH_PNG=ON -DWITH_Png=ON -DWITH_jpeg=ON -DWITH_JPEG=ON -DWITH_Jpeg=ON -DWITH_tiff=ON -DWITH_TIFF=ON -DWITH_Tiff=ON -DWITH_FFTW3=ON -DWITH_hdf5=ON -DWITH_HDF5=ON -DWITH_Hdf5=ON -DBUILD_TESTING=ON -DCREATE_CTEST_TARGETS=ON -DAUTOBUILD_TESTS=ON -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_INSTALL_DO_STRIP=OFF -DCMAKE_USER_MAKE_RULES_OVERRIDE=/var/tmp/portage/media-libs/vigra-1.7.1-r1/temp/gentoo_rules.cmake  /var/tmp/portage/media-libs/vigra-1.7.1-r1/work/vigra-1.7.1
Not searching for unused variables given on the command line.
loading initial cache file /var/tmp/portage/media-libs/vigra-1.7.1-r1/temp/gentoo_common_config.cmake
-- The C compiler identification is GNU
-- The CXX compiler identification is GNU
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Configuring VIGRA version 1.7.1
-- Searching for TIFF
-- Found TIFF: /usr/lib64/libtiff.so 
-- Searching for JPEG
-- Found JPEG: /usr/lib64/libjpeg.so 
-- Searching for PNG
-- Found ZLIB: /usr/lib64/libz.so (found version "1.2.5")
-- Found PNG: /usr/lib64/libpng.so 
-- Searching for FFTW3
-- Found FFTW3: /usr/lib64/libfftw3.so 
-- Searching for HDF5
-- Checking HDF5 version (at least 1.6): ok
-- Found HDF5: /usr/lib64/libhdf5.so 
-- Could NOT find Doxygen (missing:  DOXYGEN_EXECUTABLE) 
-- Found PythonInterp: /usr/bin/python (found version "2.7.2")
-- Checking VIGRANUMPY_DEPENDENCIES
-- Searching for Boost
-- Boost version: 1.46.1
-- Found the following Boost libraries:
--   python
-- Found PythonLibs: /usr/lib64/libpython2.7.so 
-- Searching for Python numpy: ok
-- Searching for Python nosetests: ok
-- Could NOT find sphinx documentation generator
-- Found VIGRANUMPY_DEPENDENCIES: TRUE 
-- ---------------------------------------------------------
-- VIGRA configuration information:
-- ---------------------------------------------------------
--   Using TIFF libraries: /usr/lib64/libtiff.so
--   Using JPEG libraries: /usr/lib64/libjpeg.so
--   Using PNG  libraries: /usr/lib64/libpng.so;/usr/lib64/libz.so
--   Using FFTW libraries: /usr/lib64/libfftw3.so
--   Using HDF5 libraries: /usr/lib64/libhdf5.so;/usr/lib64/libhdf5_hl.so;/usr/lib64/libz.so;/usr/lib64/libsz.so
--   Using Python libraries: /usr/lib64/libpython2.7.so;/usr/lib64/libboost_python-mt.so
-- ---------------------------------------------------------
--   binaries will be generated in: /var/tmp/portage/media-libs/vigra-1.7.1-r1/work/vigra-1.7.1
-- ---------------------------------------------------------
--   includes will be installed at: /usr/include
--   libraries will be installed at: /usr/lib64
--   binaries will be installed at: /usr/bin
--   vigra manuals cannot be generated (Doxygen or Python not found)
--   vigranumpy will be installed at /usr/lib64/python2.7/site-packages
--   vigranumpy manuals cannot be generated (Sphinx missing)
-- ---------------------------------------------------------
-- <<< Gentoo configuration >>>
Build type      Gentoo
Install path    /usr
Compiler flags:
C               -march=amdfam10 -O2 -pipe 
C++             -march=amdfam10 -O2 -pipe 
Linker flags:
Executable       -Wl,-O1 -Wl,--as-needed
Module           -Wl,-O1 -Wl,--as-needed
Shared           -Wl,-O1 -Wl,--as-needed

-- Configuring done
-- Generating done
-- Build files have been written to: /var/tmp/portage/media-libs/vigra-1.7.1-r1/work/vigra-1.7.1
>>> Source configured.
>>> Compiling source in /var/tmp/portage/media-libs/vigra-1.7.1-r1/work/vigra-1.7.1 ...
>>> Working in BUILD_DIR: "/var/tmp/portage/media-libs/vigra-1.7.1-r1/work/vigra-1.7.1"
make -j3 
[35m[1mScanning dependencies of target test_utilities
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Learning Old Random Forest:
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[0m   MultiArraySepConvSpeedTest called
Timed function: testCpySrc
   = 80000
   MultiArraySepConvSpeedTest called
Timed function: testCDR
   = 90000
   MultiArraySepConvSpeedTest called
Timed function: testCpyDest
   = 80000
   MultiArraySepConvSpeedTest called
Entering test suite MultiArraySeparableConvolutionTestSuite
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[0mEntering test suite MultiArraySeparableConvolutionTestSuite
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[0mEntering test suite NeighborhoodCirculator3dTestSuite
All (13) tests passed in test suite NeighborhoodCirculator3dTestSuite
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[0mEntering test suite VolumeLabelingTestSuite
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[0mEntering test suite SimpleAnalysisTestSuite
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[0mEntering test suite SimpleAnalysisTestSuite
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[0mEntering test suite MorphologyTestSuite
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[35m[1mScanning dependencies of target vigranumpy_core
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[0m[34m[1mRunning test_hdf5impex
[0mEntering test suite HDF5ImportExportTestSuite
All (14) tests passed in test suite HDF5ImportExportTestSuite
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[0mRFdefaultTest(): Learning on Datasets
[#       ] SPECTF
[##      ] ecoli
[###     ] glass
[####    ] ionosphere
[#####   ] iris
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[0m[31m[1mLinking CXX executable test_impex
[0m[######  ] pina_indians_diabetes
[####### ] segmentation
[########] wine

RFdefaultTest(): Comparing with Working Version:[34m[1mRunning test_impex
[0mDONE!

RFsetTest(): Learning 1200 Trees on XOR problem. DONE!
RFsetTest(): Comparing with Working Version:DONE!

RFsetTest(): Learning 1200 Trees on online problem. OJPEGSetupEncode: OJPEG encoding not supported; use new-style JPEG compression instead.
DONE!
RFoobTest(): Learning each Datasets 10 times
OJPEGSetupEncode: OJPEG encoding not supported; use new-style JPEG compression instead.
[#       ] SPECTF
OJPEGSetupEncode: OJPEG encoding not supported; use new-style JPEG compression instead.
[##      ] ecoli
TIFFOpen: intentionalFailure/foo.tiff: Cannot open.
Entering test suite ImageImportExportTestSuite
All (63) tests passed in test suite ImageImportExportTestSuite
Leaving test suite ImageImportExportTestSuite

[ 66%] Built target test_impex
[35m[1mScanning dependencies of target test_convolution
[0m[ 67%] [32mBuilding CXX object test/convolution/CMakeFiles/test_convolution.dir/test.cxx.o
[0m[###     ] glass
[ 68%] [32mBuilding CXX object test/imgproc/CMakeFiles/test_imgproc.dir/testsuccess.cxx.o
[0m[31m[1mLinking CXX executable test_imgproc
[0m[34m[1mRunning test_imgproc
[0m[####    ] ionosphere
[#####   ] iris
[######  ] pina_indians_diabetes
[####### ] segmentation
[########] wine
done!
RFnoiseTest(): Learning 100 Trees on Noise.Entering test suite ImageFunctionsTestSuite
All (68) tests passed in test suite ImageFunctionsTestSuite
Leaving test suite ImageFunctionsTestSuite

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[35m[1mScanning dependencies of target test_fourier
[0m[ 69%] [32mBuilding CXX object test/fourier/CMakeFiles/test_fourier.dir/test.cxx.o
[0mDONE!
RFnoiseTest(): Comparing oob with 0.5:DONE!

RFvariableImportanceTest(): Learning on Datasets

[######  ] pina_indians_diabetes

DONE!

RF_NanCheck(): checking contains_nan() and RF precondition on NaN
RF_InfCheck(): checking contains_inf() and RF precondition on Inf
RF_SpliceTest()....DONE
WARNING: THIS TEST CURRENTLY ONLY CHECKS WHETHER ALGORITHMS COMPILE AND RUN WITHOUT ERROR...
RF_AlgorithmTest()....cluster_permutation_importance()....
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all 100 trees have been learned in 2906.48 msec
growing random forest, which will have 100 trees

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forward_selection()....
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[0m[31m[1mLinking CXX executable test_convolution
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[0m[34m[1mRunning test_fourier
[0mEntering test suite FFTWTest
All (6) tests passed in test suite FFTWTest
Leaving test suite FFTWTest

difference to filter.xv: 4.87246e-07
Applying filter...
difference to gaborresult.xv: 8.2303e-05
difference between real parts: 0
testing vector results..
difference between imaginary parts: 2.79278e-05
applying on ROI...
difference to gaborresult.xv: 8.2303e-05
testing 8x2 GaborFilterFamily...
difference to gaborresult.xv: 4.31988e-05
difference between real parts: 1.69676e-05
Entering test suite FFTWWithGaborTest
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Leaving test suite FFTWWithGaborTest

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[35m[1mScanning dependencies of target test_tensorimaging
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[0mEntering test suite TensorTestSuite
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Leaving test suite TensorTestSuite

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[35m[1mScanning dependencies of target test_simpleanalysis
[0m[ 74%] [32mBuilding CXX object test/simpleanalysis/CMakeFiles/test_simpleanalysis.dir/test.cxx.o
[0mEntering test suite ConvolutionTestSuite
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Leaving test suite ConvolutionTestSuite

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[35m[1mScanning dependencies of target test_image
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[0mrank_selection()....
backward_elimination()....
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[0mEntering test suite ImageTestCollection
Entering test suite ImageTestSuite
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Leaving test suite ImageTestSuite
Entering test suite ImageContainerTestSuite
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Leaving test suite ImageContainerTestSuite
Entering test suite NeighborhoodCirculatorTestSuite
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Leaving test suite NeighborhoodCirculatorTestSuite
Entering test suite CrackContourCirculatorTestSuite
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Leaving test suite CrackContourCirculatorTestSuite
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Leaving test suite ImageTestCollection

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[0m[34m[1mRunning test_simpleanalysis
[0mEntering test suite SimpleAnalysisTestSuite
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Leaving test suite SimpleAnalysisTestSuite

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[35m[1mScanning dependencies of target vigranumpy_analysis
[0m[ 79%] [32mBuilding CXX object vigranumpy/src/core/CMakeFiles/vigranumpy_analysis.dir/segmentation.cxx.o
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[0mEntering test suite MultiArrayTestSuite
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Entering test suite MultiArrayDataTestSuite
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Leaving test suite MultiArrayDataTestSuite

Entering test suite ImageViewTestSuite
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Leaving test suite ImageViewTestSuite

Entering test suite MultiArrayPointOperatorsTestSuite
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Leaving test suite MultiArrayPointOperatorsTestSuite

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[35m[1mScanning dependencies of target vigranumpy_colors
[0m[ 82%] [32mBuilding CXX object vigranumpy/src/core/CMakeFiles/vigranumpy_colors.dir/colors.cxx.o
[0mDONE
RFresponseTest(): Learning on Datasets
done 
RF_ridgeRegressionTest()....WARNING: THIS TEST CURRENTLY ONLY CHECKS WHETHER RIDGE REGRESSION COMPILES AND RUNS WITHOUT ERROR...DONE
Running HDF5 Impex Test
[#       ] SPECTF
Running HDF5 Impex Test
[##      ] ecoli
Running HDF5 Impex Test
[###     ] glass
Running HDF5 Impex Test
[####    ] ionosphere
Running HDF5 Impex Test
[#####   ] iris
Running HDF5 Impex Test
[######  ] pina_indians_diabetes
Running HDF5 Impex Test
[####### ] segmentation
Running HDF5 Impex Test
[########] wine
done!
Entering test suite ClassifierTestSuite
All (13) tests passed in test suite ClassifierTestSuite
Leaving test suite ClassifierTestSuite

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[0m[34m[1mRunning vigranumpy tests
[0m[34m[1mRunning vigranumpy tests
[0m[34m[1mRunning vigranumpy tests
[0m
executing test file /var/tmp/portage/media-libs/vigra-1.7.1-r1/work/vigra-1.7.1/vigranumpy/test/test1.py
......
executing test file /var/tmp/portage/media-libs/vigra-1.7.1-r1/work/vigra-1.7.1/vigranumpy/test/test2.py
.......E..
executing test file /var/tmp/portage/media-libs/vigra-1.7.1-r1/work/vigra-1.7.1/vigranumpy/test/test3.py
......
executing test file /var/tmp/portage/media-libs/vigra-1.7.1-r1/work/vigra-1.7.1/vigranumpy/test/test_arraytypes.py
........*** stack smashing detected ***: python2.7 - terminated
python2.7: stack smashing attack in function <unknown> - terminated
Report to http://bugs.gentoo.org/
./run_vigranumpytest.sh: line 1: 30565 Killed                  /usr/bin/python -c "import nose; nose.main()" .
make[2]: *** [vigranumpy/test/vigranumpytest.so] Error 1
make[1]: *** [vigranumpy/test/CMakeFiles/vigranumpytest.dir/all] Error 2
make: *** [all] Error 2
 [31;01m*[0m ERROR: media-libs/vigra-1.7.1-r1 failed (compile phase):
 [31;01m*[0m   emake failed
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the output of 'emerge --info =media-libs/vigra-1.7.1-r1',
 [31;01m*[0m the complete build log and the output of 'emerge -pqv =media-libs/vigra-1.7.1-r1'.
 [31;01m*[0m The complete build log is located at '/var/tmp/portage/media-libs/vigra-1.7.1-r1/temp/build.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/media-libs/vigra-1.7.1-r1/temp/environment'.
 [31;01m*[0m S: '/var/tmp/portage/media-libs/vigra-1.7.1-r1/work/vigra-1.7.1'