build.log

20111014-203450.log (text/plain), 9.45 KB, created by vladimir15 on 2011-10-16 20:06:28 UTC

[32;01m * [39;49;00mPackage:    sys-cluster/openmpi-1.4.2
[32;01m * [39;49;00mRepository: gentoo
[32;01m * [39;49;00mMaintainer: [e-mail] [e-mail]
[32;01m * [39;49;00mUSE:        cxx elibc_glibc fortran ipv6 kernel_linux romio threads userland_GNU x86
[32;01m * [39;49;00mFEATURES:   sandbox userpriv usersandbox

 [32;01m*[0m OpenMPI has an overwhelming count of configuration options.
 [32;01m*[0m Don't forget the EXTRA_ECONF environment variable can let you
 [32;01m*[0m specify configure options if you find them necessary.

>>> Unpacking source...
>>> Unpacking openmpi-1.4.2.tar.bz2 to /mnt/int-data/tmp/portage/sys-cluster/openmpi-1.4.2/work
>>> Source unpacked in /mnt/int-data/tmp/portage/sys-cluster/openmpi-1.4.2/work
>>> Preparing source in /mnt/int-data/tmp/portage/sys-cluster/openmpi-1.4.2/work/openmpi-1.4.2 ...
>>> Source prepared.
>>> Configuring source in /mnt/int-data/tmp/portage/sys-cluster/openmpi-1.4.2/work/openmpi-1.4.2 ...
 * econf: updating openmpi-1.4.2/config/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating openmpi-1.4.2/config/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating openmpi-1.4.2/opal/libltdl/config/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating openmpi-1.4.2/opal/libltdl/config/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating openmpi-1.4.2/opal/mca/paffinity/linux/plpa/config/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating openmpi-1.4.2/opal/mca/paffinity/linux/plpa/config/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating openmpi-1.4.2/ompi/contrib/vt/vt/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating openmpi-1.4.2/ompi/contrib/vt/vt/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating openmpi-1.4.2/ompi/mca/io/romio/romio/confdb/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating openmpi-1.4.2/ompi/mca/io/romio/romio/confdb/config.guess with /usr/share/gnuconfig/config.guess
./configure --prefix=/usr --build=i686-pc-linux-gnu --host=i686-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --sysconfdir=/etc/openmpi --without-xgrid --enable-pretty-print-stacktrace --enable-orterun-prefix-by-default --without-slurm --enable-contrib-no-build=vt --enable-mpi-cxx --enable-io-romio --disable-heterogeneous --without-tm --enable-ipv6
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking how to create a ustar tar archive... gnutar

============================================================================
== Configuring Open MPI
============================================================================

*** Checking versions
checking Open MPI version... 1.4.2
checking Open MPI release date... May 04, 2010
checking Open MPI Subversion repository version... r23093
checking Open Run-Time Environment version... 1.4.2
checking Open Run-Time Environment release date... May 04, 2010
checking Open Run-Time Environment Subversion repository version... r23093
checking Open Portable Access Layer version... 1.4.2
checking Open Portable Access Layer release date... May 04, 2010
checking Open Portable Access Layer Subversion repository version... r23093

*** Initialization, setup
configure: builddir: /mnt/int-data/tmp/portage/sys-cluster/openmpi-1.4.2/work/openmpi-1.4.2
configure: srcdir: /mnt/int-data/tmp/portage/sys-cluster/openmpi-1.4.2/work/openmpi-1.4.2
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
installing to directory "/usr"

*** Configuration options
checking whether to run code coverage... no
checking whether to compile with branch probabilities... no
checking whether to debug memory usage... no
checking whether to profile memory usage... no
checking if want developer-level compiler pickyness... no
checking if want developer-level debugging code... no
checking if want sparse process groups... no
checking if want Fortran 77 bindings... yes
checking if want Fortran 90 bindings... yes
checking desired Fortran 90 bindings "size"... small
checking whether to enable PMPI... yes
checking if want C++ bindings... yes
checking if want MPI::SEEK_SET support... yes
checking if want to enable weak symbol support... yes
checking if want run-time MPI parameter checking... runtime
checking if want to install OMPI header files... no
checking if want pretty-print stacktrace... yes
checking if peruse support is required... no
checking max supported array dimension in F90 MPI bindings... 4
checking if pty support should be enabled... yes
checking if user wants dlopen support... yes
checking if heterogeneous support should be enabled... no
checking if want trace file debugging... no
checking if want full RTE support... yes
checking if want fault tolerance... Disabled fault tolerance
checking if want IPv6 support... yes (if underlying system supports it)
checking if want orterun "--prefix" behavior to be enabled by default... yes
checking for package/brand string... Open MPI portage@unimatrix2 Distribution
checking for ident string... 1.4.2
checking whether to add padding to the openib control header... no
checking whether to use an alternative checksum algo for messages... no

============================================================================
== Compiler and preprocessor tests
============================================================================

*** C compiler and preprocessor
checking for style of include used by make... GNU
checking for i686-pc-linux-gnu-gcc... i686-pc-linux-gnu-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether i686-pc-linux-gnu-gcc accepts -g... yes
checking for i686-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking dependency style of i686-pc-linux-gnu-gcc... gcc3
checking whether i686-pc-linux-gnu-gcc and cc understand -c and -o together... yes
checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for the C compiler vendor... gnu
checking for ANSI C header files... yes
checking if i686-pc-linux-gnu-gcc supports -finline-functions... yes
checking if i686-pc-linux-gnu-gcc supports -fno-strict-aliasing... yes
configure: WARNING:  -fno-strict-aliasing has been added to CFLAGS
checking if i686-pc-linux-gnu-gcc supports __builtin_expect... no
checking if i686-pc-linux-gnu-gcc supports __builtin_prefetch... no
checking for C optimization flags... -DNDEBUG -march=prescott --param l1-cache-size=32 l1-cache-line-size=64 l2-cache-size=1024 -mtune=generic -O2 -pipe -finline-functions -fno-strict-aliasing
checking for Interix environment... no
checking for C ident string support... 
checking for sys/types.h... no
checking for sys/stat.h... no
checking for stdlib.h... no
checking for string.h... no
checking for memory.h... no
checking for strings.h... no
checking for inttypes.h... no
checking for stdint.h... no
checking for unistd.h... no
checking for long long... no
checking for long double... no
checking for int8_t... no
checking for uint8_t... no
checking for int16_t... no
checking for uint16_t... no
checking for int32_t... no
checking for uint32_t... no
checking for int64_t... no
checking for uint64_t... no
checking for intptr_t... no
checking for uintptr_t... no
checking for mode_t... no
checking for ssize_t... no
checking for ptrdiff_t... no
checking size of char... 0
checking size of short... 0
checking size of int... 0
checking size of long... 0
checking size of float... 0
checking size of double... 0
checking size of void *... 0
checking size of size_t... 0
checking alignment of char... configure: WARNING: *** Problem running configure test!
configure: WARNING: *** See config.log for details.
configure: error: *** Cannot continue.

!!! Please attach the following file when seeking support:
!!! /mnt/int-data/tmp/portage/sys-cluster/openmpi-1.4.2/work/openmpi-1.4.2/config.log
 [31;01m*[0m ERROR: sys-cluster/openmpi-1.4.2 failed (configure phase):
 [31;01m*[0m   econf failed
 [31;01m*[0m 
 [31;01m*[0m Call stack:
 [31;01m*[0m     ebuild.sh, line   56:  Called src_configure
 [31;01m*[0m   environment, line 2649:  Called econf '--sysconfdir=/etc/openmpi' '--without-xgrid' '--enable-pretty-print-stacktrace' '--enable-orterun-prefix-by-default' '--without-slurm' '--enable-contrib-no-build=vt' '--enable-mpi-cxx' '--enable-io-romio' '--disable-heterogeneous' '--without-tm' '--enable-ipv6'
 [31;01m*[0m     ebuild.sh, line  561:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m   			die "econf failed"
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the output of 'emerge --info =sys-cluster/openmpi-1.4.2',
 [31;01m*[0m the complete build log and the output of 'emerge -pqv =sys-cluster/openmpi-1.4.2'.
 [31;01m*[0m The complete build log is located at '/var/log/portage/sys-cluster:openmpi-1.4.2:20111014-203450.log'.
 [31;01m*[0m The ebuild environment file is located at '/mnt/int-data/tmp/portage/sys-cluster/openmpi-1.4.2/temp/environment'.
 [31;01m*[0m S: '/mnt/int-data/tmp/portage/sys-cluster/openmpi-1.4.2/work/openmpi-1.4.2'