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Gentoo's Bugzilla – Attachment 287979 Details for
Bug 384715
dev-lang/R-2.13.1-r1: potentially using java without the proper eclasses
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build.log with sandbox violations
R-2.13.1-r1.build.log (text/plain), 36.63 KB, created by
Ralph Sennhauser (RETIRED)
on 2011-09-27 20:29:34 UTC
(
hide
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Description:
build.log with sandbox violations
Filename:
MIME Type:
Creator:
Ralph Sennhauser (RETIRED)
Created:
2011-09-27 20:29:34 UTC
Size:
36.63 KB
patch
obsolete
>[32;01m * [39;49;00mPackage: dev-lang/R-2.13.1-r1 >[32;01m * [39;49;00mRepository: gentoo >[32;01m * [39;49;00mMaintainer: sci-mathematics@gentoo.org >[32;01m * [39;49;00mUSE: X amd64 bash-completion elibc_glibc java kernel_linux multilib nls userland_GNU >[32;01m * [39;49;00mFEATURES: sandbox userpriv usersandbox >>>> Unpacking source... >>>> Unpacking R-2.13.1.tar.gz to /var/tmp/portage/dev-lang/R-2.13.1-r1/work >>>> Unpacking R.bash_completion.bz2 to /var/tmp/portage/dev-lang/R-2.13.1-r1/work >>>> Source unpacked in /var/tmp/portage/dev-lang/R-2.13.1-r1/work >>>> Preparing source in /var/tmp/portage/dev-lang/R-2.13.1-r1/work/R-2.13.1 ... > [32;01m*[0m Applying R-2.11.1-parallel.patch ... >[A[126C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying R-2.12.1-ldflags.patch ... >[A[126C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying R-2.13.1-zlib_header_fix.patch ... >[A[126C [34;01m[ [32;01mok[34;01m ][0m >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/dev-lang/R-2.13.1-r1/work/R-2.13.1 ... > * econf: updating R-2.13.1/tools/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating R-2.13.1/tools/config.guess with /usr/share/gnuconfig/config.guess >./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 --enable-byte-compiled-packages --enable-R-shlib --with-system-zlib --with-system-bzlib --with-system-pcre --with-system-xz --with-blas=-lblas --docdir=/usr/share/doc/R-2.13.1-r1 rdocdir=/usr/share/doc/R-2.13.1-r1 --disable-openmp --enable-nls --disable-R-profiling --disable-memory-profiling --disable-static --disable-R-static-lib --without-lapack --without-tcltk --without-jpeglib --with-recommended-packages --without-libpng --without-readline --without-cairo --with-x >configure: loading site script /usr/share/config.site >configure: loading site script /usr/share/crossdev/include/site/linux >configure: loading site script /usr/share/crossdev/include/site/x86_64-linux-gnu >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >loading site script './config.site' >loading build-specific script './config.site' >checking for pwd... /bin/pwd >checking whether builddir is srcdir... yes >checking for working aclocal... found >checking for working autoconf... found >checking for working automake... found >checking for working autoheader... found >checking for gawk... gawk >checking whether ln -s works... yes >checking for bison... bison -y >checking for ar... ar >checking for a BSD-compatible install... /usr/bin/install -c >checking for sed... /bin/sed >checking for which... /usr/bin/which >checking for /usr/bin/less... /usr/bin/less >checking for gtar... no >checking for gnutar... no >checking for tar... /bin/tar >checking for tex... no >configure: WARNING: you cannot build DVI versions of the R manuals >checking for latex... no >configure: WARNING: you cannot build DVI versions of all the help pages >checking for pdftex... no >configure: WARNING: you cannot build PDF versions of the R manuals >checking for pdflatex... no >configure: WARNING: you cannot build PDF versions of all the help pages >checking for makeindex... no >checking for makeinfo... /usr/bin/makeinfo >checking whether makeinfo version is at least 4.7... yes >checking for install-info... /usr/bin/install-info >checking for texi2dvi... /usr/bin/texi2dvi >checking for unzip... /usr/bin/unzip >checking for zip... /usr/bin/zip >checking for gzip... /bin/gzip >checking for bzip2... /bin/bzip2 >using default browser ... /usr/bin/xdg-open >checking for /usr/bin/xdg-open... /usr/bin/xdg-open >checking for notangle... false >checking for pkg-config... /usr/bin/pkg-config >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking whether x86_64-pc-linux-gnu-gcc needs -traditional... no >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >defining F77 to be x86_64-pc-linux-gnu-gfortran >checking for x86_64-pc-linux-gnu-g77... x86_64-pc-linux-gnu-gfortran >checking whether we are using the GNU Fortran 77 compiler... yes >checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes >checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++ >checking whether we are using the GNU C++ compiler... yes >checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes >checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E >checking whether __attribute__((visibility())) is supported... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -fvisibility... yes >checking whether x86_64-pc-linux-gnu-gfortran accepts -fvisibility... yes >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking minix/config.h usability... no >checking minix/config.h presence... no >checking for minix/config.h... no >checking whether it is safe to define __EXTENSIONS__... yes >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether we are using the GNU Objective C compiler... no >checking whether x86_64-pc-linux-gnu-gcc accepts -g... no >checking for Objective C++ compiler... trying some possibilities >checking whether x86_64-pc-linux-gnu-g++ can compile ObjC++... no >no working compiler found >checking for a sed that does not truncate output... (cached) /bin/sed >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B >checking the name lister (/usr/bin/nm -B) interface... BSD nm >checking the maximum length of command line arguments... 1572864 >checking whether the shell understands some XSI constructs... yes >checking whether the shell understands "+="... yes >checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r >checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-ar... (cached) ar >checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok >checking for dlfcn.h... yes >checking whether we are using the GNU C++ compiler... (cached) yes >checking whether x86_64-pc-linux-gnu-g++ accepts -g... (cached) yes >checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E >checking for x86_64-pc-linux-gnu-g77... (cached) x86_64-pc-linux-gnu-gfortran >checking whether we are using the GNU Fortran 77 compiler... (cached) yes >checking whether x86_64-pc-linux-gnu-gfortran accepts -g... (cached) yes >checking for objdir... .libs >checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes >checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes >checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC >checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes >checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes >checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking for cos in -lm... yes >checking for sin in -lm... yes >checking for dlopen in -ldl... yes >checking for ANSI C header files... (cached) yes >checking whether time.h and sys/time.h may both be included... yes >checking for dirent.h that defines DIR... yes >checking for library containing opendir... none required >checking for sys/wait.h that is POSIX.1 compatible... yes >checking arpa/inet.h usability... yes >checking arpa/inet.h presence... yes >checking for arpa/inet.h... yes >checking dl.h usability... no >checking dl.h presence... no >checking for dl.h... no >checking for dlfcn.h... (cached) yes >checking elf.h usability... yes >checking elf.h presence... yes >checking for elf.h... yes >checking fcntl.h usability... yes >checking fcntl.h presence... yes >checking for fcntl.h... yes >checking floatingpoint.h usability... no >checking floatingpoint.h presence... no >checking for floatingpoint.h... no >checking fpu_control.h usability... yes >checking fpu_control.h presence... yes >checking for fpu_control.h... yes >checking glob.h usability... yes >checking glob.h presence... yes >checking for glob.h... yes >checking grp.h usability... yes >checking grp.h presence... yes >checking for grp.h... yes >checking locale.h usability... yes >checking locale.h presence... yes >checking for locale.h... yes >checking netdb.h usability... yes >checking netdb.h presence... yes >checking for netdb.h... yes >checking netinet/in.h usability... yes >checking netinet/in.h presence... yes >checking for netinet/in.h... yes >checking for pwd.h... (cached) yes >checking for strings.h... (cached) yes >checking sys/param.h usability... yes >checking sys/param.h presence... yes >checking for sys/param.h... yes >checking sys/select.h usability... yes >checking sys/select.h presence... yes >checking for sys/select.h... yes >checking sys/socket.h usability... yes >checking sys/socket.h presence... yes >checking for sys/socket.h... yes >checking for sys/stat.h... (cached) yes >checking sys/resource.h usability... yes >checking sys/resource.h presence... yes >checking for sys/resource.h... yes >checking sys/time.h usability... yes >checking sys/time.h presence... yes >checking for sys/time.h... yes >checking sys/times.h usability... yes >checking sys/times.h presence... yes >checking for sys/times.h... yes >checking sys/utsname.h usability... yes >checking sys/utsname.h presence... yes >checking for sys/utsname.h... yes >checking time.h usability... yes >checking time.h presence... yes >checking for time.h... yes >checking for unistd.h... (cached) yes >checking errno.h usability... yes >checking errno.h presence... yes >checking for errno.h... yes >checking for inttypes.h... (cached) yes >checking limits.h usability... yes >checking limits.h presence... yes >checking for limits.h... yes >checking stdarg.h usability... yes >checking stdarg.h presence... yes >checking for stdarg.h... yes >checking stdbool.h usability... yes >checking stdbool.h presence... yes >checking for stdbool.h... yes >checking for stdint.h... (cached) yes >checking for string.h... (cached) yes >checking whether setjmp.h is POSIX.1 compatible... yes >checking whether sigsetjmp is declared... yes >checking whether siglongjmp is declared... yes >checking for GNU C library with version >= 2... yes >checking return type of signal handlers... void >checking for pid_t... yes >checking for size_t... yes >checking whether SIZE_MAX is declared... yes >checking for blkcnt_t... yes >checking for type of socket length... socklen_t * >checking for stack_t... yes >checking for intptr_t... yes >checking for uintptr_t... yes >checking whether byte ordering is bigendian... no >checking for an ANSI C-conforming const... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C99... -std=gnu99 >checking for x86_64-pc-linux-gnu-gcc -std=gnu99 option to accept ISO Standard C... (cached) -std=gnu99 >checking for inline... inline >checking size of int... 4 >checking size of long... 8 >checking size of long long... 8 >checking size of double... 8 >checking size of long double... 16 >checking size of size_t... 8 >checking whether we can compute C Make dependencies... yes, using x86_64-pc-linux-gnu-gcc -std=gnu99 -MM >checking whether x86_64-pc-linux-gnu-gcc -std=gnu99 supports -c -o FILE.lo... yes >checking how to get verbose linking output from x86_64-pc-linux-gnu-gfortran... -v >checking for Fortran 77 libraries of x86_64-pc-linux-gnu-gfortran... -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.3/../../.. -lgfortran -lm >checking how to get verbose linking output from x86_64-pc-linux-gnu-gcc -std=gnu99... -v >checking for C libraries of x86_64-pc-linux-gnu-gcc -std=gnu99... -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.3 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.3/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.3/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.3/../../.. -lgcc_s >checking for dummy main to link with Fortran 77 libraries... none >checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore >checking whether x86_64-pc-linux-gnu-gfortran appends underscores to external names... yes >checking whether x86_64-pc-linux-gnu-gfortran appends extra underscores to external names... no >checking whether mixed C/Fortran code can be run... yes >checking whether x86_64-pc-linux-gnu-gfortran and x86_64-pc-linux-gnu-gcc -std=gnu99 agree on int and double... yes >checking whether x86_64-pc-linux-gnu-gfortran and x86_64-pc-linux-gnu-gcc -std=gnu99 agree on double complex... yes >checking whether x86_64-pc-linux-gnu-g++ accepts -M for generating dependencies... yes >checking whether we can compute ObjC Make dependencies... no >checking for ObjC runtime library... none >checking whether C runtime needs -D__NO_MATH_INLINES... no >checking for xmkmf... no >checking for off_t... yes >checking for working alloca.h... yes >checking for alloca... yes >checking whether alloca is declared... yes >checking whether expm1 exists and is declared... yes >checking whether hypot exists and is declared... yes >checking whether log1p exists and is declared... yes >checking whether log2 exists and is declared... yes >checking whether log10 exists and is declared... yes >checking whether nearbyint exists and is declared... yes >checking whether nearbyintl exists and is declared... yes >checking whether powl exists and is declared... yes >checking whether rint exists and is declared... yes >checking whether rintl exists and is declared... yes >checking whether va_copy exists and is declared... yes >checking for isblank... yes >checking whether time exists and is declared... yes >checking for fseeko... yes >checking for ftello... yes >checking for matherr... yes >checking whether fcntl exists and is declared... yes >checking whether getgrgid exists and is declared... yes >checking whether getpwuid exists and is declared... yes >checking whether sigaction exists and is declared... yes >checking whether sigaltstack exists and is declared... yes >checking whether sigemptyset exists and is declared... yes >checking whether fdopen exists and is declared... yes >checking whether popen exists and is declared... yes >checking whether setenv exists and is declared... yes >checking whether unsetenv exists and is declared... yes >checking whether getrlimit exists and is declared... yes >checking whether getrusage exists and is declared... yes >checking whether chmod exists and is declared... yes >checking whether mkfifo exists and is declared... yes >checking whether stat exists and is declared... yes >checking whether umask exists and is declared... yes >checking whether gettimeofday exists and is declared... yes >checking whether times exists and is declared... yes >checking whether access exists and is declared... yes >checking whether chdir exists and is declared... yes >checking whether execv exists and is declared... yes >checking whether ftruncate exists and is declared... yes >checking whether getcwd exists and is declared... yes >checking whether getuid exists and is declared... yes >checking whether link exists and is declared... yes >checking whether readlink exists and is declared... yes >checking whether symlink exists and is declared... yes >checking whether sysconf exists and is declared... yes >checking for putenv... yes >checking whether putenv is declared... yes >checking for vasprintf... yes >checking whether vasprintf is declared... yes >checking for mempcpy... yes >checking for realpath... yes >checking whether realpath is declared... yes >checking whether glob exists and is declared... yes >checking for isnan... yes >checking whether isfinite is declared... yes >checking whether isnan is declared... yes >checking whether you have IEEE 754 floating-point arithmetic... yes >checking whether putenv("FOO") can unset an environment variable... yes >checking whether putenv("FOO=") can unset an environment variable... no >checking for nl_langinfo and CODESET... yes >checking for acosh... yes >checking for asinh... yes >checking for atanh... yes >checking for mkdtemp... yes >checking for snprintf... yes >checking for strdup... yes >checking for strncasecmp... yes >checking for vsnprintf... yes >checking whether acosh is declared... yes >checking whether asinh is declared... yes >checking whether atanh is declared... yes >checking whether mkdtemp is declared... yes >checking whether snprintf is declared... yes >checking whether strdup is declared... yes >checking whether strncasecmp is declared... yes >checking whether vsnprintf is declared... yes >checking for library containing connect... none required >checking for library containing gethostbyname... none required >checking for library containing xdr_string... none required >checking for __setfpucw... no >checking for working calloc... yes >checking for working isfinite... yes >checking for working log1p... yes >checking whether ftell works correctly on files opened for append... yes >checking for working sigaction... yes >checking whether mktime sets errno... no >checking whether C99 double complex is supported... >checking complex.h usability... yes >checking complex.h presence... yes >checking for complex.h... yes >checking for double complex... yes >yes >checking whether cabs exists and is declared... yes >checking whether carg exists and is declared... yes >checking whether cexp exists and is declared... yes >checking whether clog exists and is declared... yes >checking whether csqrt exists and is declared... yes >checking whether cpow exists and is declared... yes >checking whether ccos exists and is declared... yes >checking whether csin exists and is declared... yes >checking whether ctan exists and is declared... yes >checking whether cacos exists and is declared... yes >checking whether casin exists and is declared... yes >checking whether catan exists and is declared... yes >checking whether ccosh exists and is declared... yes >checking whether csinh exists and is declared... yes >checking whether ctanh exists and is declared... yes >checking for cblas_cdotu_sub in vecLib framework... no >checking for dgemm_ in -lblas ... yes >checking whether double complex BLAS can be used... yes >checking whether the BLAS is complete... yes >checking iconv.h usability... yes >checking iconv.h presence... yes >checking for iconv.h... yes >checking for iconv... yes >checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes >checking for iconvlist... no >checking for iconv... yes >checking for iconv declaration... install-shextern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); >checking wchar.h usability... yes >checking wchar.h presence... yes >checking for wchar.h... yes >checking wctype.h usability... yes >checking wctype.h presence... yes >checking for wctype.h... yes >checking whether mbrtowc exists and is declared... yes >checking whether wcrtomb exists and is declared... yes >checking whether wcscoll exists and is declared... yes >checking whether wcsftime exists and is declared... yes >checking whether wcstod exists and is declared... yes >checking whether mbstowcs exists and is declared... yes >checking whether wcstombs exists and is declared... yes >checking whether wctrans exists and is declared... yes >checking whether iswblank exists and is declared... yes >checking whether wctype exists and is declared... yes >checking whether iswctype exists and is declared... yes >checking for wctrans_t... yes >checking for mbstate_t... yes >checking for ICU... yes >checking for X... libraries , headers >checking for gethostbyname... yes >checking for connect... yes >checking for remove... yes >checking for shmat... yes >checking for IceConnectionNumber in -lICE... yes >checking X11/Intrinsic.h usability... yes >checking X11/Intrinsic.h presence... yes >checking for X11/Intrinsic.h... yes >checking for XtToolkitInitialize in -lXt... yes >using X11 ... yes >checking for KeySym... yes >checking X11/Xmu/Atoms.h usability... yes >checking X11/Xmu/Atoms.h presence... yes >checking for X11/Xmu/Atoms.h... yes >checking for XmuInternAtom in -lXmu... yes >checking for BSD networking... yes >checking tiffio.h usability... yes >checking tiffio.h presence... yes >checking for tiffio.h... yes >checking for TIFFOpen in -ltiff... yes >checking rpc/types.h usability... yes >checking rpc/types.h presence... yes >checking for rpc/types.h... yes >checking for rpc/xdr.h... yes >checking for XDR support... yes >checking for gzeof in -lz... yes >checking zlib.h usability... yes >checking zlib.h presence... yes >checking for zlib.h... yes >checking if zlib version >= 1.2.3... yes >checking whether zlib support needs to be compiled... no >checking for BZ2_bzlibVersion in -lbz2... yes >checking bzlib.h usability... yes >checking bzlib.h presence... yes >checking for bzlib.h... yes >checking if bzip2 version >= 1.0.6... yes >checking whether bzip2 support needs to be compiled... no >checking for lzma_version_number in -llzma... yes >checking lzma.h usability... yes >checking lzma.h presence... yes >checking for lzma.h... yes >checking if lzma version >= 4.999... yes >checking for pcre_fullinfo in -lpcre... yes >checking pcre.h usability... yes >checking pcre.h presence... yes >checking for pcre.h... yes >checking pcre/pcre.h usability... no >checking pcre/pcre.h presence... no >checking for pcre/pcre.h... no >checking if PCRE version >= 7.6... yes >checking whether PCRE support needs to be compiled... no >checking whether leap seconds are treated according to POSIX... yes >checking for special C compiler options needed for large files... no >checking for _FILE_OFFSET_BITS value needed for large files... no >checking for _LARGEFILE_SOURCE value needed for large files... no >checking whether KERN_USRSTACK sysctl is supported... no >checking for visible __lib_stack_end... yes >checking for lpr... lpr >checking for paperconf... /usr/bin/paperconf >checking for java... /etc/java-config-2/current-system-vm/jre/bin/java >checking for javac... /etc/java-config-2/current-system-vm/bin/javac >checking for javah... /etc/java-config-2/current-system-vm/bin/javah >checking for jar... /etc/java-config-2/current-system-vm/bin/jar >checking whether Java compiler works... yes >checking whether Java compiler works for version 1.4... yes >checking whether Java interpreter works... yes >checking Java environment... /etc/java-config-2/current-system-vm >checking for cached Java settings... no >checking whether JNI programs can be compiled... no >checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran >checking whether we are using the GNU Fortran compiler... yes >checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes >checking for x86_64-pc-linux-gnu-gfortran... (cached) x86_64-pc-linux-gnu-gfortran >checking whether we are using the GNU Fortran compiler... (cached) yes >checking whether x86_64-pc-linux-gnu-gfortran accepts -g... (cached) yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC >checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes >checking if x86_64-pc-linux-gnu-gfortran static flag -static works... no >checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking for Fortran flag to compile .f90 files... none >checking for Fortran flag to compile .f95 files... none >checking for recommended packages... yes >checking whether NLS is requested... yes > >Configuring src/extra/intl directory >checking whether make sets $(MAKE)... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for msgfmt... /usr/bin/msgfmt >checking for gmsgfmt... /usr/bin/gmsgfmt >checking for xgettext... /usr/bin/xgettext >checking for msgmerge... /usr/bin/msgmerge >checking whether we are using the GNU C Library 2 or newer... yes >checking for x86_64-pc-linux-gnu-ranlib... (cached) x86_64-pc-linux-gnu-ranlib >checking for simple visibility declarations... yes >checking for inline... inline >checking for stdint.h... yes >checking for stdlib.h... (cached) yes >checking for unistd.h... (cached) yes >checking for sys/param.h... (cached) yes >checking for getpagesize... yes >checking for working mmap... yes >checking whether integer division by zero raises SIGFPE... yes >checking for inttypes.h... yes >checking for unsigned long long int... yes >checking for inttypes.h... (cached) yes >checking whether the inttypes.h PRIxNN macros are broken... no >checking whether imported symbols can be declared weak... yes >checking for multithread API to use... none >checking argz.h usability... yes >checking argz.h presence... yes >checking for argz.h... yes >checking for inttypes.h... (cached) yes >checking for limits.h... (cached) yes >checking for unistd.h... (cached) yes >checking for sys/param.h... (cached) yes >checking for getcwd... yes >checking for getegid... yes >checking for geteuid... yes >checking for getgid... yes >checking for getuid... yes >checking for mempcpy... (cached) yes >checking for munmap... yes >checking for stpcpy... yes >checking for strcasecmp... yes >checking for strdup... (cached) yes >checking for strtoul... yes >checking for tsearch... yes >checking for argz_count... yes >checking for argz_stringify... yes >checking for argz_next... yes >checking for __fsetlocking... yes >checking whether feof_unlocked is declared... yes >checking whether fgets_unlocked is declared... yes >checking for iconv... (cached) yes >checking for iconv declaration... (cached) install-shextern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); >checking for NL_LOCALE_NAME macro... yes >checking for bison... bison >checking version of bison... 2.4.3, ok >checking for long long int... yes >checking for long double... yes >checking for wchar_t... yes >checking for wint_t... yes >checking for intmax_t... yes >checking whether printf() supports POSIX/XSI format strings... yes >checking whether we are using the GNU C Library 2.1 or newer... yes >checking for stdint.h... (cached) yes >checking for SIZE_MAX... yes >checking for stdint.h... (cached) yes >checking for CFPreferencesCopyAppValue... no >checking for CFLocaleCopyCurrent... no >checking for ptrdiff_t... yes >checking stddef.h usability... yes >checking stddef.h presence... yes >checking for stddef.h... yes >checking for stdlib.h... (cached) yes >checking for string.h... (cached) yes >checking for asprintf... yes >checking for fwprintf... yes >checking for putenv... (cached) yes >checking for setenv... yes >checking for setlocale... yes >checking for snprintf... (cached) yes >checking for wcslen... yes >checking whether _snprintf is declared... no >checking whether _snwprintf is declared... no >checking whether getc_unlocked is declared... yes >checking for nl_langinfo and CODESET... (cached) yes >checking for LC_MESSAGES... yes >checking for shared library run path origin... done >checking for CFPreferencesCopyAppValue... (cached) no >checking for CFLocaleCopyCurrent... (cached) no >checking whether included gettext is requested... no >checking for GNU gettext in libc... yes >checking whether to use NLS... yes >checking where the gettext function comes from... libc >Finished configuring src/extra/intl directory > >using as R_SHELL for scripts ... /bin/sh >configure: creating ./config.status >config.status: creating Makeconf >config.status: creating Makefile >config.status: creating doc/Makefile >config.status: creating doc/html/Makefile >config.status: creating doc/manual/Makefile >config.status: creating etc/Makefile >config.status: creating etc/Makeconf >config.status: creating etc/Renviron >config.status: creating etc/ldpaths >config.status: creating m4/Makefile >config.status: creating po/Makefile.in >config.status: creating share/Makefile >config.status: creating src/Makefile >config.status: creating src/appl/Makefile >config.status: creating src/extra/Makefile >config.status: creating src/extra/blas/Makefile >config.status: creating src/extra/bzip2/Makefile >config.status: creating src/extra/intl/Makefile >config.status: creating src/extra/pcre/Makefile >config.status: creating src/extra/tre/Makefile >config.status: creating src/extra/xdr/Makefile >config.status: creating src/extra/xz/Makefile >config.status: creating src/extra/zlib/Makefile >config.status: creating src/include/Makefile >config.status: creating src/include/Rmath.h0 >config.status: creating src/include/R_ext/Makefile >config.status: creating src/library/Recommended/Makefile >config.status: creating src/library/Makefile >config.status: creating src/library/base/DESCRIPTION >config.status: creating src/library/base/Makefile >config.status: creating src/library/compiler/DESCRIPTION >config.status: creating src/library/compiler/Makefile >config.status: creating src/library/datasets/DESCRIPTION >config.status: creating src/library/datasets/Makefile >config.status: creating src/library/graphics/DESCRIPTION >config.status: creating src/library/graphics/Makefile >config.status: creating src/library/grDevices/DESCRIPTION >config.status: creating src/library/grDevices/Makefile >config.status: creating src/library/grDevices/src/Makefile >config.status: creating src/library/grid/DESCRIPTION >config.status: creating src/library/grid/Makefile >config.status: creating src/library/grid/src/Makefile >config.status: creating src/library/methods/DESCRIPTION >config.status: creating src/library/methods/Makefile >config.status: creating src/library/methods/src/Makefile >config.status: creating src/library/profile/Makefile >config.status: creating src/library/stats/DESCRIPTION >config.status: creating src/library/stats/Makefile >config.status: creating src/library/stats/src/Makefile >config.status: creating src/library/stats4/DESCRIPTION >config.status: creating src/library/stats4/Makefile >config.status: creating src/library/splines/DESCRIPTION >config.status: creating src/library/splines/Makefile >config.status: creating src/library/splines/src/Makefile >config.status: creating src/library/tcltk/DESCRIPTION >config.status: creating src/library/tcltk/Makefile >config.status: creating src/library/tcltk/src/Makefile >config.status: creating src/library/tools/DESCRIPTION >config.status: creating src/library/tools/Makefile >config.status: creating src/library/tools/src/Makefile >config.status: creating src/library/utils/DESCRIPTION >config.status: creating src/library/utils/Makefile >config.status: creating src/main/Makefile >config.status: creating src/modules/Makefile >config.status: creating src/modules/X11/Makefile >config.status: creating src/modules/internet/Makefile >config.status: creating src/modules/lapack/Makefile >config.status: creating src/modules/vfonts/Makefile >config.status: creating src/nmath/Makefile >config.status: creating src/nmath/standalone/Makefile >config.status: creating src/scripts/Makefile >config.status: creating src/scripts/R.sh >config.status: creating src/scripts/Rcmd >config.status: creating src/scripts/f77_f2c >config.status: creating src/scripts/mkinstalldirs >config.status: creating src/scripts/pager >config.status: creating src/unix/Makefile >config.status: creating tests/Makefile >config.status: creating tests/Embedding/Makefile >config.status: creating tests/Examples/Makefile >config.status: creating tests/Native/Makefile >config.status: creating tools/Makefile >config.status: creating src/include/config.h >config.status: executing libtool commands >config.status: executing po-directories commands >config.status: creating po/POTFILES >config.status: creating po/Makefile >config.status: executing stamp-h commands > >R is now configured for x86_64-pc-linux-gnu > > Source directory: . > Installation directory: /usr > > C compiler: x86_64-pc-linux-gnu-gcc -std=gnu99 -O2 -pipe -march=native > Fortran 77 compiler: x86_64-pc-linux-gnu-gfortran > > C++ compiler: x86_64-pc-linux-gnu-g++ -O2 -pipe -march=native > Fortran 90/95 compiler: x86_64-pc-linux-gnu-gfortran > Obj-C compiler: x86_64-pc-linux-gnu-gcc > > Interfaces supported: X11 > External libraries: BLAS(generic), ICU, lzma > Additional capabilities: TIFF, NLS > Options enabled: shared R library, Java > > Recommended packages: yes > >configure: WARNING: you cannot build DVI versions of the R manuals >configure: WARNING: you cannot build DVI versions of all the help pages >configure: WARNING: you cannot build PDF versions of the R manuals >configure: WARNING: you cannot build PDF versions of all the help pages >>>> Source configured. >[31;01m--------------------------- ACCESS VIOLATION SUMMARY ---------------------------[0m >[31;01mLOG FILE[0m "/var/log/sandbox/sandbox-13412.log" > >VERSION 1.0 >FORMAT: F - Function called >FORMAT: S - Access Status >FORMAT: P - Path as passed to function >FORMAT: A - Absolute Path (not canonical) >FORMAT: R - Canonical Path >FORMAT: C - Command Line > >F: open_wr >S: deny >P: /proc/self/coredump_filter >A: /proc/self/coredump_filter >R: /proc/18779/coredump_filter >C: /etc/java-config-2/current-system-vm/bin/javac A.java > >F: open_wr >S: deny >P: /proc/self/coredump_filter >A: /proc/self/coredump_filter >R: /proc/18792/coredump_filter >C: /etc/java-config-2/current-system-vm/bin/javac -source 1.4 -target 1.4 A.java > >F: open_wr >S: deny >P: /proc/self/coredump_filter >A: /proc/self/coredump_filter >R: /proc/18804/coredump_filter >C: /etc/java-config-2/current-system-vm/jre/bin/java -classpath tools getsp -test > >F: open_wr >S: deny >P: /proc/self/coredump_filter >A: /proc/self/coredump_filter >R: /proc/18815/coredump_filter >C: /etc/java-config-2/current-system-vm/jre/bin/java -classpath tools getsp -libs > >F: open_wr >S: deny >P: /proc/self/coredump_filter >A: /proc/self/coredump_filter >R: /proc/18826/coredump_filter >C: /etc/java-config-2/current-system-vm/jre/bin/java -classpath tools getsp java.library.path >[31;01m--------------------------------------------------------------------------------[0m >
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bug 384715
: 287979 |
287983