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Gentoo's Bugzilla – Attachment 287641 Details for
Bug 384385
sci-biology/allpathslg-37578 fails to compile
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build.log
allpathslg-37578:20110925-005055.log (text/plain), 337.09 KB, created by
Agostino Sarubbo
on 2011-09-25 01:09:10 UTC
(
hide
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Description:
build.log
Filename:
MIME Type:
Creator:
Agostino Sarubbo
Created:
2011-09-25 01:09:10 UTC
Size:
337.09 KB
patch
obsolete
> * Package: sci-biology/allpathslg-37578 > * Repository: gentoo > * Maintainer: weaver@gentoo.org sci-biology@gentoo.org > * USE: amd64 elibc_glibc kernel_linux multilib test userland_GNU > * FEATURES: sandbox test userpriv usersandbox >>>> Unpacking source... >>>> Unpacking allpathslg-37578.tar.gz to /tmp/portage/sci-biology/allpathslg-37578/work >>>> Source unpacked in /tmp/portage/sci-biology/allpathslg-37578/work >>>> Preparing source in /tmp/portage/sci-biology/allpathslg-37578/work/allpathslg-37578 ... > * Running eautoreconf in '/tmp/portage/sci-biology/allpathslg-37578/work/allpathslg-37578' ... > * Running aclocal -I m4 ... > [ ok ] > * Running libtoolize --copy --force --install --automake ... > [ ok ] > * Running aclocal -I m4 ... > [ ok ] > * Running autoconf ... > [ ok ] > * Running autoheader ... > [ ok ] > * Running automake --add-missing --copy --foreign ... > [ ok ] > * Running elibtoolize in: allpathslg-37578/ > * Applying portage-1.2.0.patch ... > * Applying sed-1.5.6.patch ... > * Applying as-needed-2.2.6.patch ... >>>> Source prepared. >>>> Configuring source in /tmp/portage/sci-biology/allpathslg-37578/work/allpathslg-37578 ... > * econf: updating allpathslg-37578/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating allpathslg-37578/config.guess with /usr/share/gnuconfig/config.guess >./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 >checking for a BSD-compatible install... /usr/bin/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking how to print strings... printf >checking for style of include used by make... GNU >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3 >checking for a sed that does not truncate output... /bin/sed >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B >checking the name lister (/usr/bin/nm -B) interface... BSD nm >checking whether ln -s works... yes >checking the maximum length of command line arguments... 1572864 >checking whether the shell understands some XSI constructs... yes >checking whether the shell understands "+="... yes >checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop >checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop >checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r >checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-dlltool... no >checking for dlltool... no >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar >checking for archiver @FILE support... @ >checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok >checking for sysroot... no >checking for x86_64-pc-linux-gnu-mt... no >checking for mt... no >checking if : is a manifest tool... no >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... no >checking whether to build static libraries... yes >checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++ >checking whether we are using the GNU C++ compiler... yes >checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes >checking dependency style of x86_64-pc-linux-gnu-g++... gcc3 >checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E >checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64 >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes >checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes >checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... (cached) GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether byte ordering is bigendian... no >g++ version is >= 4.3.3... yes >checking for Boost headers version >= 1.38.0... yes >checking for Boost's header version... 1_46_1 >checking for the toolset name used by Boost for x86_64-pc-linux-gnu-g++... gcc45 -gcc >checking boost/system/error_code.hpp usability... yes >checking boost/system/error_code.hpp presence... yes >checking for boost/system/error_code.hpp... yes >checking for the Boost system library... yes >checking boost/filesystem/path.hpp usability... yes >checking boost/filesystem/path.hpp presence... yes >checking for boost/filesystem/path.hpp... yes >checking for the Boost filesystem library... yes >checking for the pthreads library -lpthreads... no >checking whether pthreads work without any flags... no >checking whether pthreads work with -Kthread... no >checking whether pthreads work with -kthread... no >checking for the pthreads library -llthread... no >checking whether pthreads work with -pthread... yes >checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE >checking if more special flags are required for pthreads... no >checking for x86_64-pc-linux-gnu-gcc option to support OpenMP... -fopenmp >checking validity of OpenMP configuation.... configure: creating ./config.status >config.status: creating Makefile >config.status: creating src/Makefile >config.status: creating src/config.h >config.status: executing depfiles commands >config.status: executing libtool commands >>>> Source configured. >>>> Compiling source in /tmp/portage/sci-biology/allpathslg-37578/work/allpathslg-37578 ... >make -j4 V=1 >Making all in src >make[1]: Entering directory `/tmp/portage/sci-biology/allpathslg-37578/work/allpathslg-37578/src' >(CDPATH="${ZSH_VERSION+.}:" && cd .. && /bin/sh /tmp/portage/sci-biology/allpathslg-37578/work/allpathslg-37578/missing --run autoheader) >configure.ac:16: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body >../../lib/autoconf/lang.m4:194: AC_LANG_CONFTEST is expanded from... >../../lib/autoconf/general.m4:2662: _AC_LINK_IFELSE is expanded from... >../../lib/autoconf/general.m4:2679: AC_LINK_IFELSE is expanded from... >m4/broad.m4:32: AC_OPENMP_CEHCK is expanded from... >configure.ac:16: the top level >rm -f stamp-h1 >touch config.h.in >cd .. && /bin/sh ./config.status src/config.h >config.status: creating src/config.h >config.status: src/config.h is unchanged >make all-am >make[2]: Entering directory `/tmp/portage/sci-biology/allpathslg-37578/work/allpathslg-37578/src' >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Mutmer.o -MD -MP -MF .deps/Mutmer.Tpo -c -o Mutmer.o `test -f 'pairwise_aligners/Mutmer.cc' || echo './'`pairwise_aligners/Mutmer.cc >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT EvalScaffoldsUtils.o -MD -MP -MF .deps/EvalScaffoldsUtils.Tpo -c -o EvalScaffoldsUtils.o `test -f 'paths/reporting/EvalScaffoldsUtils.cc' || echo './'`paths/reporting/EvalScaffoldsUtils.cc >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT EvalUtils.o -MD -MP -MF .deps/EvalUtils.Tpo -c -o EvalUtils.o `test -f 'paths/EvalUtils.cc' || echo './'`paths/EvalUtils.cc >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Floatvector.o -MD -MP -MF .deps/Floatvector.Tpo -c -o Floatvector.o Floatvector.cc >mv -f .deps/Mutmer.Tpo .deps/Mutmer.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT UnibaseCopyNumber3Core.o -MD -MP -MF .deps/UnibaseCopyNumber3Core.Tpo -c -o UnibaseCopyNumber3Core.o `test -f 'paths/UnibaseCopyNumber3Core.cc' || echo './'`paths/UnibaseCopyNumber3Core.cc >mv -f .deps/Floatvector.Tpo .deps/Floatvector.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Mempool.o -MD -MP -MF .deps/Mempool.Tpo -c -o Mempool.o `test -f 'feudal/Mempool.cc' || echo './'`feudal/Mempool.cc >mv -f .deps/Mempool.Tpo .deps/Mempool.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Basevector.o -MD -MP -MF .deps/Basevector.Tpo -c -o Basevector.o Basevector.cc >mv -f .deps/UnibaseCopyNumber3Core.Tpo .deps/UnibaseCopyNumber3Core.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT VecOverlap.o -MD -MP -MF .deps/VecOverlap.Tpo -c -o VecOverlap.o VecOverlap.cc >mv -f .deps/Basevector.Tpo .deps/Basevector.Po >mv -f .deps/EvalScaffoldsUtils.Tpo .deps/EvalScaffoldsUtils.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT HKPMerger.o -MD -MP -MF .deps/HKPMerger.Tpo -c -o HKPMerger.o `test -f 'paths/HKPMerger.cc' || echo './'`paths/HKPMerger.cc >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FindUnipathSeedsLG.o -MD -MP -MF .deps/FindUnipathSeedsLG.Tpo -c -o FindUnipathSeedsLG.o `test -f 'paths/FindUnipathSeedsLG.cc' || echo './'`paths/FindUnipathSeedsLG.cc >mv -f .deps/EvalUtils.Tpo .deps/EvalUtils.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT AffineRefiner.o -MD -MP -MF .deps/AffineRefiner.Tpo -c -o AffineRefiner.o `test -f 'pairwise_aligners/AffineRefiner.cc' || echo './'`pairwise_aligners/AffineRefiner.cc >mv -f .deps/VecOverlap.Tpo .deps/VecOverlap.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ExtendUnipathSeqs.o -MD -MP -MF .deps/ExtendUnipathSeqs.Tpo -c -o ExtendUnipathSeqs.o `test -f 'paths/ExtendUnipathSeqs.cc' || echo './'`paths/ExtendUnipathSeqs.cc >In file included from ./ReadLocationLG.h:13:0, > from paths/FindUnipathSeedsLG.cc:18: >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = ReadLocationLG, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = ReadLocationLG, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >mv -f .deps/AffineRefiner.Tpo .deps/AffineRefiner.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ParsedArgs.o -MD -MP -MF .deps/ParsedArgs.Tpo -c -o ParsedArgs.o `test -f 'system/ParsedArgs.cc' || echo './'`system/ParsedArgs.cc >mv -f .deps/ExtendUnipathSeqs.Tpo .deps/ExtendUnipathSeqs.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Solid.o -MD -MP -MF .deps/Solid.Tpo -c -o Solid.o `test -f 'solid/Solid.cc' || echo './'`solid/Solid.cc >mv -f .deps/HKPMerger.Tpo .deps/HKPMerger.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FeudalFileWriter.o -MD -MP -MF .deps/FeudalFileWriter.Tpo -c -o FeudalFileWriter.o `test -f 'feudal/FeudalFileWriter.cc' || echo './'`feudal/FeudalFileWriter.cc >mv -f .deps/FeudalFileWriter.Tpo .deps/FeudalFileWriter.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Qualvector.o -MD -MP -MF .deps/Qualvector.Tpo -c -o Qualvector.o Qualvector.cc >mv -f .deps/Solid.Tpo .deps/Solid.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT AddSuperReads.o -MD -MP -MF .deps/AddSuperReads.Tpo -c -o AddSuperReads.o `test -f 'paths/AddSuperReads.cc' || echo './'`paths/AddSuperReads.cc >mv -f .deps/ParsedArgs.Tpo .deps/ParsedArgs.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT UnipathNhoodLG.o -MD -MP -MF .deps/UnipathNhoodLG.Tpo -c -o UnipathNhoodLG.o `test -f 'paths/UnipathNhoodLG.cc' || echo './'`paths/UnipathNhoodLG.cc >mv -f .deps/FindUnipathSeedsLG.Tpo .deps/FindUnipathSeedsLG.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT PseudoUnipatherLib.o -MD -MP -MF .deps/PseudoUnipatherLib.Tpo -c -o PseudoUnipatherLib.o `test -f 'paths/PseudoUnipatherLib.cc' || echo './'`paths/PseudoUnipatherLib.cc >In file included from ./ReadLocationLG.h:13:0, > from ./LocsHandlerLG.h:12, > from paths/UnipathNhoodLG.cc:15: >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = ReadLocationLG, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = ReadLocationLG, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >mv -f .deps/Qualvector.Tpo .deps/Qualvector.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ReadLoc.o -MD -MP -MF .deps/ReadLoc.Tpo -c -o ReadLoc.o `test -f 'paths/ReadLoc.cc' || echo './'`paths/ReadLoc.cc >mv -f .deps/AddSuperReads.Tpo .deps/AddSuperReads.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Digraph.o -MD -MP -MF .deps/Digraph.Tpo -c -o Digraph.o `test -f 'graph/Digraph.cc' || echo './'`graph/Digraph.cc >mv -f .deps/PseudoUnipatherLib.Tpo .deps/PseudoUnipatherLib.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Equiv.o -MD -MP -MF .deps/Equiv.Tpo -c -o Equiv.o Equiv.cc >mv -f .deps/Equiv.Tpo .deps/Equiv.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT IndexedAlignmentPlusVector.o -MD -MP -MF .deps/IndexedAlignmentPlusVector.Tpo -c -o IndexedAlignmentPlusVector.o IndexedAlignmentPlusVector.cc >mv -f .deps/ReadLoc.Tpo .deps/ReadLoc.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT CLinkBundle.o -MD -MP -MF .deps/CLinkBundle.Tpo -c -o CLinkBundle.o `test -f 'paths/reporting/CLinkBundle.cc' || echo './'`paths/reporting/CLinkBundle.cc >mv -f .deps/UnipathNhoodLG.Tpo .deps/UnipathNhoodLG.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT PerfectCount.o -MD -MP -MF .deps/PerfectCount.Tpo -c -o PerfectCount.o `test -f 'lookup/PerfectCount.cc' || echo './'`lookup/PerfectCount.cc >mv -f .deps/IndexedAlignmentPlusVector.Tpo .deps/IndexedAlignmentPlusVector.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SupersHandler.o -MD -MP -MF .deps/SupersHandler.Tpo -c -o SupersHandler.o SupersHandler.cc >mv -f .deps/CLinkBundle.Tpo .deps/CLinkBundle.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT LookAlign.o -MD -MP -MF .deps/LookAlign.Tpo -c -o LookAlign.o `test -f 'lookup/LookAlign.cc' || echo './'`lookup/LookAlign.cc >mv -f .deps/PerfectCount.Tpo .deps/PerfectCount.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT CSublink.o -MD -MP -MF .deps/CSublink.Tpo -c -o CSublink.o `test -f 'paths/CSublink.cc' || echo './'`paths/CSublink.cc >mv -f .deps/Digraph.Tpo .deps/Digraph.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT PatcherCottageCore.o -MD -MP -MF .deps/PatcherCottageCore.Tpo -c -o PatcherCottageCore.o `test -f 'paths/PatcherCottageCore.cc' || echo './'`paths/PatcherCottageCore.cc >In file included from lookup/LookAlign.cc:31:0: >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = GaplessAlign, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = GaplessAlign, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >mv -f .deps/SupersHandler.Tpo .deps/SupersHandler.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ReadTracker.o -MD -MP -MF .deps/ReadTracker.Tpo -c -o ReadTracker.o `test -f 'util/ReadTracker.cc' || echo './'`util/ReadTracker.cc >mv -f .deps/CSublink.Tpo .deps/CSublink.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ProcBuf.o -MD -MP -MF .deps/ProcBuf.Tpo -c -o ProcBuf.o `test -f 'system/ProcBuf.cc' || echo './'`system/ProcBuf.cc >mv -f .deps/ProcBuf.Tpo .deps/ProcBuf.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Quality.o -MD -MP -MF .deps/Quality.Tpo -c -o Quality.o Quality.cc >mv -f .deps/ReadTracker.Tpo .deps/ReadTracker.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT GenomePlacement.o -MD -MP -MF .deps/GenomePlacement.Tpo -c -o GenomePlacement.o `test -f 'paths/simulation/GenomePlacement.cc' || echo './'`paths/simulation/GenomePlacement.cc >In file included from paths/simulation/GenomePlacement.cc:12:0: >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = genome_placement, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = genome_placement, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >mv -f .deps/Quality.Tpo .deps/Quality.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT JumpAligner.o -MD -MP -MF .deps/JumpAligner.Tpo -c -o JumpAligner.o `test -f 'lookup/JumpAligner.cc' || echo './'`lookup/JumpAligner.cc >mv -f .deps/LookAlign.Tpo .deps/LookAlign.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT LookupTabBuilder.o -MD -MP -MF .deps/LookupTabBuilder.Tpo -c -o LookupTabBuilder.o `test -f 'lookup/LookupTabBuilder.cc' || echo './'`lookup/LookupTabBuilder.cc >mv -f .deps/GenomePlacement.Tpo .deps/GenomePlacement.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Alignlets2ReadLocs.o -MD -MP -MF .deps/Alignlets2ReadLocs.Tpo -c -o Alignlets2ReadLocs.o `test -f 'paths/Alignlets2ReadLocs.cc' || echo './'`paths/Alignlets2ReadLocs.cc >mv -f .deps/LookupTabBuilder.Tpo .deps/LookupTabBuilder.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ScaffoldAccuracyCore.o -MD -MP -MF .deps/ScaffoldAccuracyCore.Tpo -c -o ScaffoldAccuracyCore.o `test -f 'reporting/ScaffoldAccuracyCore.cc' || echo './'`reporting/ScaffoldAccuracyCore.cc >mv -f .deps/JumpAligner.Tpo .deps/JumpAligner.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Misc.o -MD -MP -MF .deps/Misc.Tpo -c -o Misc.o Misc.cc >mv -f .deps/Misc.Tpo .deps/Misc.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT PerfStat.o -MD -MP -MF .deps/PerfStat.Tpo -c -o PerfStat.o `test -f 'reporting/PerfStat.cc' || echo './'`reporting/PerfStat.cc >mv -f .deps/PerfStat.Tpo .deps/PerfStat.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FeudalTools.o -MD -MP -MF .deps/FeudalTools.Tpo -c -o FeudalTools.o `test -f 'feudal/FeudalTools.cc' || echo './'`feudal/FeudalTools.cc >mv -f .deps/ScaffoldAccuracyCore.Tpo .deps/ScaffoldAccuracyCore.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT RunCommand.o -MD -MP -MF .deps/RunCommand.Tpo -c -o RunCommand.o `test -f 'util/RunCommand.cc' || echo './'`util/RunCommand.cc >mv -f .deps/Alignlets2ReadLocs.Tpo .deps/Alignlets2ReadLocs.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT AlignTwoBasevectors.o -MD -MP -MF .deps/AlignTwoBasevectors.Tpo -c -o AlignTwoBasevectors.o `test -f 'pairwise_aligners/AlignTwoBasevectors.cc' || echo './'`pairwise_aligners/AlignTwoBasevectors.cc >mv -f .deps/FeudalTools.Tpo .deps/FeudalTools.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT UnipathSeqBuilder.o -MD -MP -MF .deps/UnipathSeqBuilder.Tpo -c -o UnipathSeqBuilder.o `test -f 'paths/UnipathSeqBuilder.cc' || echo './'`paths/UnipathSeqBuilder.cc >mv -f .deps/UnipathSeqBuilder.Tpo .deps/UnipathSeqBuilder.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT RemoveDuplicateAligns.o -MD -MP -MF .deps/RemoveDuplicateAligns.Tpo -c -o RemoveDuplicateAligns.o `test -f 'paths/RemoveDuplicateAligns.cc' || echo './'`paths/RemoveDuplicateAligns.cc >mv -f .deps/RunCommand.Tpo .deps/RunCommand.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT LongReadTools.o -MD -MP -MF .deps/LongReadTools.Tpo -c -o LongReadTools.o `test -f 'paths/LongReadTools.cc' || echo './'`paths/LongReadTools.cc >mv -f .deps/AlignTwoBasevectors.Tpo .deps/AlignTwoBasevectors.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SortKmersB.o -MD -MP -MF .deps/SortKmersB.Tpo -c -o SortKmersB.o `test -f 'sort_kmers/SortKmersB.cc' || echo './'`sort_kmers/SortKmersB.cc >mv -f .deps/RemoveDuplicateAligns.Tpo .deps/RemoveDuplicateAligns.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SortKmers.o -MD -MP -MF .deps/SortKmers.Tpo -c -o SortKmers.o `test -f 'kmers/SortKmers.cc' || echo './'`kmers/SortKmers.cc >mv -f .deps/SortKmers.Tpo .deps/SortKmers.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ThreadsafeIO.o -MD -MP -MF .deps/ThreadsafeIO.Tpo -c -o ThreadsafeIO.o `test -f 'system/ThreadsafeIO.cc' || echo './'`system/ThreadsafeIO.cc >mv -f .deps/LongReadTools.Tpo .deps/LongReadTools.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Shuffle.o -MD -MP -MF .deps/Shuffle.Tpo -c -o Shuffle.o `test -f 'random/Shuffle.cc' || echo './'`random/Shuffle.cc >mv -f .deps/ThreadsafeIO.Tpo .deps/ThreadsafeIO.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT AlignSeqsToHyper.o -MD -MP -MF .deps/AlignSeqsToHyper.Tpo -c -o AlignSeqsToHyper.o `test -f 'paths/AlignSeqsToHyper.cc' || echo './'`paths/AlignSeqsToHyper.cc >mv -f .deps/Shuffle.Tpo .deps/Shuffle.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Assert.o -MD -MP -MF .deps/Assert.Tpo -c -o Assert.o `test -f 'system/Assert.cc' || echo './'`system/Assert.cc >mv -f .deps/Assert.Tpo .deps/Assert.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FastaConverter.o -MD -MP -MF .deps/FastaConverter.Tpo -c -o FastaConverter.o FastaConverter.cc >In file included from ./ReadLocationLG.h:13:0, > from ./paths/AlignSeqsToHyper.h:16, > from paths/AlignSeqsToHyper.cc:13: >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = ReadLocationLG, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = ReadLocationLG, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >mv -f .deps/FastaConverter.Tpo .deps/FastaConverter.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT NormalRandom.o -MD -MP -MF .deps/NormalRandom.Tpo -c -o NormalRandom.o `test -f 'random/NormalRandom.cc' || echo './'`random/NormalRandom.cc >mv -f .deps/PatcherCottageCore.Tpo .deps/PatcherCottageCore.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT File.o -MD -MP -MF .deps/File.Tpo -c -o File.o `test -f 'system/file/File.cc' || echo './'`system/file/File.cc >mv -f .deps/NormalRandom.Tpo .deps/NormalRandom.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ContigsManager.o -MD -MP -MF .deps/ContigsManager.Tpo -c -o ContigsManager.o `test -f 'paths/ContigsManager.cc' || echo './'`paths/ContigsManager.cc >mv -f .deps/File.Tpo .deps/File.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SysConf.o -MD -MP -MF .deps/SysConf.Tpo -c -o SysConf.o `test -f 'system/SysConf.cc' || echo './'`system/SysConf.cc >mv -f .deps/SysConf.Tpo .deps/SysConf.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SeqOnHyper.o -MD -MP -MF .deps/SeqOnHyper.Tpo -c -o SeqOnHyper.o `test -f 'paths/SeqOnHyper.cc' || echo './'`paths/SeqOnHyper.cc >mv -f .deps/ContigsManager.Tpo .deps/ContigsManager.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT MakeAlignsStatic.o -MD -MP -MF .deps/MakeAlignsStatic.Tpo -c -o MakeAlignsStatic.o `test -f 'pairwise_aligners/MakeAlignsStatic.cc' || echo './'`pairwise_aligners/MakeAlignsStatic.cc >mv -f .deps/SeqOnHyper.Tpo .deps/SeqOnHyper.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SymLink.o -MD -MP -MF .deps/SymLink.Tpo -c -o SymLink.o `test -f 'system/file/SymLink.cc' || echo './'`system/file/SymLink.cc >mv -f .deps/SymLink.Tpo .deps/SymLink.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FastaVerifier.o -MD -MP -MF .deps/FastaVerifier.Tpo -c -o FastaVerifier.o FastaVerifier.cc >mv -f .deps/FastaVerifier.Tpo .deps/FastaVerifier.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SaveScaffoldGraph.o -MD -MP -MF .deps/SaveScaffoldGraph.Tpo -c -o SaveScaffoldGraph.o `test -f 'paths/SaveScaffoldGraph.cc' || echo './'`paths/SaveScaffoldGraph.cc >mv -f .deps/AlignSeqsToHyper.Tpo .deps/AlignSeqsToHyper.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FastaFileset.o -MD -MP -MF .deps/FastaFileset.Tpo -c -o FastaFileset.o FastaFileset.cc >mv -f .deps/SaveScaffoldGraph.Tpo .deps/SaveScaffoldGraph.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT HyperKmerPath.o -MD -MP -MF .deps/HyperKmerPath.Tpo -c -o HyperKmerPath.o `test -f 'paths/HyperKmerPath.cc' || echo './'`paths/HyperKmerPath.cc >mv -f .deps/FastaFileset.Tpo .deps/FastaFileset.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT PowerOf2.o -MD -MP -MF .deps/PowerOf2.Tpo -c -o PowerOf2.o `test -f 'math/PowerOf2.cc' || echo './'`math/PowerOf2.cc >mv -f .deps/PowerOf2.Tpo .deps/PowerOf2.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT KmerParcels.o -MD -MP -MF .deps/KmerParcels.Tpo -c -o KmerParcels.o `test -f 'kmers/KmerParcels.cc' || echo './'`kmers/KmerParcels.cc >mv -f .deps/KmerParcels.Tpo .deps/KmerParcels.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT TokenizeString.o -MD -MP -MF .deps/TokenizeString.Tpo -c -o TokenizeString.o TokenizeString.cc >mv -f .deps/SortKmersB.Tpo .deps/SortKmersB.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT KmerParcelsBuilder.o -MD -MP -MF .deps/KmerParcelsBuilder.Tpo -c -o KmerParcelsBuilder.o `test -f 'kmers/kmer_parcels/KmerParcelsBuilder.cc' || echo './'`kmers/kmer_parcels/KmerParcelsBuilder.cc >mv -f .deps/TokenizeString.Tpo .deps/TokenizeString.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT QueryLookupTableCore.o -MD -MP -MF .deps/QueryLookupTableCore.Tpo -c -o QueryLookupTableCore.o `test -f 'lookup/QueryLookupTableCore.cc' || echo './'`lookup/QueryLookupTableCore.cc >In file included from ./system/System.h:14:0, > from ./CoreTools.h:17, > from ./feudal/FieldVec.h:20, > from ./feudal/BaseVec.h:13, > from ./Basevector.h:12, > from lookup/QueryLookupTableCore.cc:438: >lookup/QueryLookupTableCore.cc: In function âvoid QueryLookupTableCore(int, char**)â: >lookup/QueryLookupTableCore.cc:2085:78: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/4.5.3/include/g++-v4/vector:65:0, > from ./system/System.h:15, > from ./CoreTools.h:17, > from ./feudal/FieldVec.h:20, > from ./feudal/BaseVec.h:13, > from ./Basevector.h:12, > from lookup/QueryLookupTableCore.cc:438: >./lookup/LookAlign.h: In member function âvoid look_align::BinaryRead(int)â: >./lookup/LookAlign.h:264:67: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./lookup/LookAlign.h:266:42: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./lookup/LookAlign.h:270:48: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./lookup/LookAlign.h:271:51: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./lookup/LookAlign.h:277:34: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >mv -f .deps/HyperKmerPath.Tpo .deps/HyperKmerPath.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FindGaps.o -MD -MP -MF .deps/FindGaps.Tpo -c -o FindGaps.o FindGaps.cc >mv -f .deps/FindGaps.Tpo .deps/FindGaps.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT KmerShape.o -MD -MP -MF .deps/KmerShape.Tpo -c -o KmerShape.o `test -f 'kmers/KmerShape.cc' || echo './'`kmers/KmerShape.cc >mv -f .deps/KmerShape.Tpo .deps/KmerShape.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT BinaryIO.o -MD -MP -MF .deps/BinaryIO.Tpo -c -o BinaryIO.o BinaryIO.cc >mv -f .deps/BinaryIO.Tpo .deps/BinaryIO.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Arith.o -MD -MP -MF .deps/Arith.Tpo -c -o Arith.o `test -f 'math/Arith.cc' || echo './'`math/Arith.cc >mv -f .deps/Arith.Tpo .deps/Arith.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT BasevectorTools.o -MD -MP -MF .deps/BasevectorTools.Tpo -c -o BasevectorTools.o BasevectorTools.cc >mv -f .deps/BasevectorTools.Tpo .deps/BasevectorTools.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT GapSkip.o -MD -MP -MF .deps/GapSkip.Tpo -c -o GapSkip.o `test -f 'paths/GapSkip.cc' || echo './'`paths/GapSkip.cc >mv -f .deps/GapSkip.Tpo .deps/GapSkip.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT VecAlignmentPlus.o -MD -MP -MF .deps/VecAlignmentPlus.Tpo -c -o VecAlignmentPlus.o VecAlignmentPlus.cc >In file included from ./system/System.h:14:0, > from ./CoreTools.h:17, > from ./feudal/FieldVec.h:20, > from feudal/BaseVec.h:13, > from Basevector.h:12, > from Alignment.h:30, > from VecAlignmentPlus.cc:13: >VecAlignmentPlus.cc: In function âvoid ReadAlignsIndex(const String&, int, int, vec<int>&)â: >VecAlignmentPlus.cc:458:52: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >VecAlignmentPlus.cc:465:54: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >mv -f .deps/VecAlignmentPlus.Tpo .deps/VecAlignmentPlus.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ReadFillRecord.o -MD -MP -MF .deps/ReadFillRecord.Tpo -c -o ReadFillRecord.o `test -f 'paths/ReadFillRecord.cc' || echo './'`paths/ReadFillRecord.cc >In file included from paths/ReadFillRecord.cc:4:0: >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = ReadFillRecord, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = ReadFillRecord, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >mv -f .deps/ReadFillRecord.Tpo .deps/ReadFillRecord.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT OffsetTracker.o -MD -MP -MF .deps/OffsetTracker.Tpo -c -o OffsetTracker.o `test -f 'paths/OffsetTracker.cc' || echo './'`paths/OffsetTracker.cc >mv -f .deps/OffsetTracker.Tpo .deps/OffsetTracker.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT NStatsTools.o -MD -MP -MF .deps/NStatsTools.Tpo -c -o NStatsTools.o `test -f 'math/NStatsTools.cc' || echo './'`math/NStatsTools.cc >lookup/QueryLookupTableCore.cc: In function âvoid QueryLookupTableCore(int, char**)â: >lookup/QueryLookupTableCore.cc:1247:6: note: variable tracking size limit exceeded with -fvar-tracking-assignments, retrying without >mv -f .deps/NStatsTools.Tpo .deps/NStatsTools.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Exit.o -MD -MP -MF .deps/Exit.Tpo -c -o Exit.o `test -f 'system/Exit.cc' || echo './'`system/Exit.cc >mv -f .deps/Exit.Tpo .deps/Exit.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SmithWatFree.o -MD -MP -MF .deps/SmithWatFree.Tpo -c -o SmithWatFree.o `test -f 'pairwise_aligners/SmithWatFree.cc' || echo './'`pairwise_aligners/SmithWatFree.cc >mv -f .deps/QueryLookupTableCore.Tpo .deps/QueryLookupTableCore.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ContigActualloc.o -MD -MP -MF .deps/ContigActualloc.Tpo -c -o ContigActualloc.o `test -f 'layout/ContigActualloc.cc' || echo './'`layout/ContigActualloc.cc >mv -f .deps/ContigActualloc.Tpo .deps/ContigActualloc.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FirstLookupFinderECJ.o -MD -MP -MF .deps/FirstLookupFinderECJ.Tpo -c -o FirstLookupFinderECJ.o `test -f 'lookup/FirstLookupFinderECJ.cc' || echo './'`lookup/FirstLookupFinderECJ.cc >mv -f .deps/SmithWatFree.Tpo .deps/SmithWatFree.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SuckScaffolds.o -MD -MP -MF .deps/SuckScaffolds.Tpo -c -o SuckScaffolds.o `test -f 'paths/SuckScaffolds.cc' || echo './'`paths/SuckScaffolds.cc >mv -f .deps/FirstLookupFinderECJ.Tpo .deps/FirstLookupFinderECJ.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT PackAlign.o -MD -MP -MF .deps/PackAlign.Tpo -c -o PackAlign.o PackAlign.cc >In file included from PackAlign.cc:18:0: >VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = placement_mark, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = placement_mark, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >mv -f .deps/SuckScaffolds.Tpo .deps/SuckScaffolds.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT MuxWalkGraph.o -MD -MP -MF .deps/MuxWalkGraph.Tpo -c -o MuxWalkGraph.o `test -f 'paths/MuxWalkGraph.cc' || echo './'`paths/MuxWalkGraph.cc >mv -f .deps/PackAlign.Tpo .deps/PackAlign.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ReadsToPathsCoreX.o -MD -MP -MF .deps/ReadsToPathsCoreX.Tpo -c -o ReadsToPathsCoreX.o `test -f 'paths/ReadsToPathsCoreX.cc' || echo './'`paths/ReadsToPathsCoreX.cc >mv -f .deps/MuxWalkGraph.Tpo .deps/MuxWalkGraph.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SortKmersA.o -MD -MP -MF .deps/SortKmersA.Tpo -c -o SortKmersA.o `test -f 'sort_kmers/SortKmersA.cc' || echo './'`sort_kmers/SortKmersA.cc >mv -f .deps/ReadsToPathsCoreX.Tpo .deps/ReadsToPathsCoreX.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SortKmersC.o -MD -MP -MF .deps/SortKmersC.Tpo -c -o SortKmersC.o `test -f 'sort_kmers/SortKmersC.cc' || echo './'`sort_kmers/SortKmersC.cc >mv -f .deps/SortKmersA.Tpo .deps/SortKmersA.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT RunTime.o -MD -MP -MF .deps/RunTime.Tpo -c -o RunTime.o `test -f 'system/RunTime.cc' || echo './'`system/RunTime.cc >mv -f .deps/SortKmersC.Tpo .deps/SortKmersC.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT DumbCall.o -MD -MP -MF .deps/DumbCall.Tpo -c -o DumbCall.o `test -f 'polymorphism/DumbCall.cc' || echo './'`polymorphism/DumbCall.cc >mv -f .deps/RunTime.Tpo .deps/RunTime.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SeedNeighborhoodAnnex.o -MD -MP -MF .deps/SeedNeighborhoodAnnex.Tpo -c -o SeedNeighborhoodAnnex.o `test -f 'paths/SeedNeighborhoodAnnex.cc' || echo './'`paths/SeedNeighborhoodAnnex.cc >mv -f .deps/KmerParcelsBuilder.Tpo .deps/KmerParcelsBuilder.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT IdentifyCircularScaffolds.o -MD -MP -MF .deps/IdentifyCircularScaffolds.Tpo -c -o IdentifyCircularScaffolds.o `test -f 'paths/IdentifyCircularScaffolds.cc' || echo './'`paths/IdentifyCircularScaffolds.cc >In file included from ./ReadLocationLG.h:13:0, > from paths/SeedNeighborhoodAnnex.cc:35: >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = ReadLocationLG, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = ReadLocationLG, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >mv -f .deps/DumbCall.Tpo .deps/DumbCall.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ParseSet.o -MD -MP -MF .deps/ParseSet.Tpo -c -o ParseSet.o ParseSet.cc >mv -f .deps/IdentifyCircularScaffolds.Tpo .deps/IdentifyCircularScaffolds.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT CommonPatherCore.o -MD -MP -MF .deps/CommonPatherCore.Tpo -c -o CommonPatherCore.o `test -f 'paths/CommonPatherCore.cc' || echo './'`paths/CommonPatherCore.cc >mv -f .deps/ParseSet.Tpo .deps/ParseSet.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ImproperMerge.o -MD -MP -MF .deps/ImproperMerge.Tpo -c -o ImproperMerge.o `test -f 'paths/ImproperMerge.cc' || echo './'`paths/ImproperMerge.cc >mv -f .deps/CommonPatherCore.Tpo .deps/CommonPatherCore.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SeedNeighborhood.o -MD -MP -MF .deps/SeedNeighborhood.Tpo -c -o SeedNeighborhood.o `test -f 'paths/SeedNeighborhood.cc' || echo './'`paths/SeedNeighborhood.cc >mv -f .deps/ImproperMerge.Tpo .deps/ImproperMerge.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FastaParser.o -MD -MP -MF .deps/FastaParser.Tpo -c -o FastaParser.o `test -f 'util/FastaParser.cc' || echo './'`util/FastaParser.cc >In file included from ./ReadLocationLG.h:13:0, > from ./paths/SeedNeighborhood.h:52, > from paths/SeedNeighborhood.cc:18: >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = ReadLocationLG, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = ReadLocationLG, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >mv -f .deps/FastaParser.Tpo .deps/FastaParser.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT LinkTimestamp.o -MD -MP -MF .deps/LinkTimestamp.Tpo -c -o LinkTimestamp.o LinkTimestamp.cc >mv -f .deps/LinkTimestamp.Tpo .deps/LinkTimestamp.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT NormalDistribution.o -MD -MP -MF .deps/NormalDistribution.Tpo -c -o NormalDistribution.o `test -f 'random/NormalDistribution.cc' || echo './'`random/NormalDistribution.cc >mv -f .deps/NormalDistribution.Tpo .deps/NormalDistribution.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT MemTracker.o -MD -MP -MF .deps/MemTracker.Tpo -c -o MemTracker.o `test -f 'system/MemTracker.cc' || echo './'`system/MemTracker.cc >mv -f .deps/MemTracker.Tpo .deps/MemTracker.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT PathEmbedding.o -MD -MP -MF .deps/PathEmbedding.Tpo -c -o PathEmbedding.o `test -f 'paths/PathEmbedding.cc' || echo './'`paths/PathEmbedding.cc >mv -f .deps/SeedNeighborhoodAnnex.Tpo .deps/SeedNeighborhoodAnnex.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT PerfectLookup.o -MD -MP -MF .deps/PerfectLookup.Tpo -c -o PerfectLookup.o `test -f 'lookup/PerfectLookup.cc' || echo './'`lookup/PerfectLookup.cc >mv -f .deps/PathEmbedding.Tpo .deps/PathEmbedding.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FirstLookupPerfect.o -MD -MP -MF .deps/FirstLookupPerfect.Tpo -c -o FirstLookupPerfect.o `test -f 'lookup/FirstLookupPerfect.cc' || echo './'`lookup/FirstLookupPerfect.cc >mv -f .deps/FirstLookupPerfect.Tpo .deps/FirstLookupPerfect.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT InsertWalker.o -MD -MP -MF .deps/InsertWalker.Tpo -c -o InsertWalker.o `test -f 'paths/InsertWalker.cc' || echo './'`paths/InsertWalker.cc >mv -f .deps/PerfectLookup.Tpo .deps/PerfectLookup.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FindClosures.o -MD -MP -MF .deps/FindClosures.Tpo -c -o FindClosures.o `test -f 'paths/FindClosures.cc' || echo './'`paths/FindClosures.cc >mv -f .deps/SeedNeighborhood.Tpo .deps/SeedNeighborhood.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT CSuperLinks.o -MD -MP -MF .deps/CSuperLinks.Tpo -c -o CSuperLinks.o `test -f 'paths/reporting/CSuperLinks.cc' || echo './'`paths/reporting/CSuperLinks.cc >mv -f .deps/InsertWalker.Tpo .deps/InsertWalker.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT MapAligns.o -MD -MP -MF .deps/MapAligns.Tpo -c -o MapAligns.o `test -f 'paths/MapAligns.cc' || echo './'`paths/MapAligns.cc >mv -f .deps/MakeAlignsStatic.Tpo .deps/MakeAlignsStatic.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT MemberOf.o -MD -MP -MF .deps/MemberOf.Tpo -c -o MemberOf.o MemberOf.cc >mv -f .deps/MemberOf.Tpo .deps/MemberOf.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT MersenneTwister.o -MD -MP -MF .deps/MersenneTwister.Tpo -c -o MersenneTwister.o `test -f 'random/MersenneTwister.cc' || echo './'`random/MersenneTwister.cc >mv -f .deps/MersenneTwister.Tpo .deps/MersenneTwister.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT System.o -MD -MP -MF .deps/System.Tpo -c -o System.o `test -f 'system/System.cc' || echo './'`system/System.cc >system/System.cc: In function âString GetTempDir(const String&)â: >system/System.cc:1054:47: warning: ignoring return value of âchar* mkdtemp(char*)â, declared with attribute warn_unused_result >mv -f .deps/MapAligns.Tpo .deps/MapAligns.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FastaNameParser.o -MD -MP -MF .deps/FastaNameParser.Tpo -c -o FastaNameParser.o FastaNameParser.cc >mv -f .deps/CSuperLinks.Tpo .deps/CSuperLinks.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SubsumptionList.o -MD -MP -MF .deps/SubsumptionList.Tpo -c -o SubsumptionList.o `test -f 'paths/SubsumptionList.cc' || echo './'`paths/SubsumptionList.cc >mv -f .deps/FastaNameParser.Tpo .deps/FastaNameParser.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT InternalMergeImpl.o -MD -MP -MF .deps/InternalMergeImpl.Tpo -c -o InternalMergeImpl.o `test -f 'paths/InternalMergeImpl.cc' || echo './'`paths/InternalMergeImpl.cc >mv -f .deps/FindClosures.Tpo .deps/FindClosures.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT GordianKnot.o -MD -MP -MF .deps/GordianKnot.Tpo -c -o GordianKnot.o `test -f 'paths/GordianKnot.cc' || echo './'`paths/GordianKnot.cc >mv -f .deps/System.Tpo .deps/System.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT BreakBadScaffolds.o -MD -MP -MF .deps/BreakBadScaffolds.Tpo -c -o BreakBadScaffolds.o `test -f 'paths/BreakBadScaffolds.cc' || echo './'`paths/BreakBadScaffolds.cc >In file included from ./ReadLocationLG.h:13:0, > from ./paths/GordianKnot.h:48, > from paths/GordianKnot.cc:20: >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = ReadLocationLG, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = ReadLocationLG, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >mv -f .deps/SubsumptionList.Tpo .deps/SubsumptionList.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT MatchList.o -MD -MP -MF .deps/MatchList.Tpo -c -o MatchList.o `test -f 'pairwise_aligners/MatchList.cc' || echo './'`pairwise_aligners/MatchList.cc >mv -f .deps/MatchList.Tpo .deps/MatchList.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT AgpMods.o -MD -MP -MF .deps/AgpMods.Tpo -c -o AgpMods.o `test -f 'agp/AgpMods.cc' || echo './'`agp/AgpMods.cc >mv -f .deps/GordianKnot.Tpo .deps/GordianKnot.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT RunAllPathsCommon.o -MD -MP -MF .deps/RunAllPathsCommon.Tpo -c -o RunAllPathsCommon.o `test -f 'paths/RunAllPathsCommon.cc' || echo './'`paths/RunAllPathsCommon.cc >mv -f .deps/AgpMods.Tpo .deps/AgpMods.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT BinaryStream.o -MD -MP -MF .deps/BinaryStream.Tpo -c -o BinaryStream.o `test -f 'feudal/BinaryStream.cc' || echo './'`feudal/BinaryStream.cc >mv -f .deps/BinaryStream.Tpo .deps/BinaryStream.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT LookupTableBuilder.o -MD -MP -MF .deps/LookupTableBuilder.Tpo -c -o LookupTableBuilder.o `test -f 'lookup/LookupTableBuilder.cc' || echo './'`lookup/LookupTableBuilder.cc >mv -f .deps/BreakBadScaffolds.Tpo .deps/BreakBadScaffolds.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Charvector.o -MD -MP -MF .deps/Charvector.Tpo -c -o Charvector.o Charvector.cc >mv -f .deps/RunAllPathsCommon.Tpo .deps/RunAllPathsCommon.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SimpleLoop.o -MD -MP -MF .deps/SimpleLoop.Tpo -c -o SimpleLoop.o `test -f 'paths/SimpleLoop.cc' || echo './'`paths/SimpleLoop.cc >mv -f .deps/LookupTableBuilder.Tpo .deps/LookupTableBuilder.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT KmerPath.o -MD -MP -MF .deps/KmerPath.Tpo -c -o KmerPath.o `test -f 'paths/KmerPath.cc' || echo './'`paths/KmerPath.cc >mv -f .deps/InternalMergeImpl.Tpo .deps/InternalMergeImpl.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SeqInterval.o -MD -MP -MF .deps/SeqInterval.Tpo -c -o SeqInterval.o SeqInterval.cc >In file included from SeqInterval.cc:10:0: >VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = seq_interval, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = seq_interval, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >mv -f .deps/Charvector.Tpo .deps/Charvector.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT HTMLUtils.o -MD -MP -MF .deps/HTMLUtils.Tpo -c -o HTMLUtils.o `test -f 'system/HTMLUtils.cc' || echo './'`system/HTMLUtils.cc >mv -f .deps/SeqInterval.Tpo .deps/SeqInterval.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Crash.o -MD -MP -MF .deps/Crash.Tpo -c -o Crash.o `test -f 'system/Crash.cc' || echo './'`system/Crash.cc >mv -f .deps/SimpleLoop.Tpo .deps/SimpleLoop.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Overlap.o -MD -MP -MF .deps/Overlap.Tpo -c -o Overlap.o Overlap.cc >mv -f .deps/Crash.Tpo .deps/Crash.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Generic.o -MD -MP -MF .deps/Generic.Tpo -c -o Generic.o `test -f 'feudal/Generic.cc' || echo './'`feudal/Generic.cc >mv -f .deps/HTMLUtils.Tpo .deps/HTMLUtils.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT VerifyGapLengths.o -MD -MP -MF .deps/VerifyGapLengths.Tpo -c -o VerifyGapLengths.o `test -f 'paths/VerifyGapLengths.cc' || echo './'`paths/VerifyGapLengths.cc >mv -f .deps/Generic.Tpo .deps/Generic.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FetchReadsAmb.o -MD -MP -MF .deps/FetchReadsAmb.Tpo -c -o FetchReadsAmb.o FetchReadsAmb.cc >mv -f .deps/Overlap.Tpo .deps/Overlap.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Random.o -MD -MP -MF .deps/Random.Tpo -c -o Random.o `test -f 'random/Random.cc' || echo './'`random/Random.cc >mv -f .deps/Random.Tpo .deps/Random.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ScoreAlignment.o -MD -MP -MF .deps/ScoreAlignment.Tpo -c -o ScoreAlignment.o ScoreAlignment.cc >mv -f .deps/VerifyGapLengths.Tpo .deps/VerifyGapLengths.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT AssemblyCleanupTools.o -MD -MP -MF .deps/AssemblyCleanupTools.Tpo -c -o AssemblyCleanupTools.o `test -f 'paths/AssemblyCleanupTools.cc' || echo './'`paths/AssemblyCleanupTools.cc >mv -f .deps/FetchReadsAmb.Tpo .deps/FetchReadsAmb.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo 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>x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT KmerBaseBroker.o -MD -MP -MF .deps/KmerBaseBroker.Tpo -c -o KmerBaseBroker.o `test -f 'paths/KmerBaseBroker.cc' || echo './'`paths/KmerBaseBroker.cc >mv -f .deps/Placement.Tpo .deps/Placement.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Bernoulli.o -MD -MP 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'paths/OffsetDistributionInterface.cc' || echo './'`paths/OffsetDistributionInterface.cc >mv -f .deps/BuildScaffoldGraph.Tpo .deps/BuildScaffoldGraph.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT PairedPair.o -MD -MP -MF .deps/PairedPair.Tpo -c -o PairedPair.o `test -f 'paths/PairedPair.cc' || echo './'`paths/PairedPair.cc >mv -f .deps/PdfEntry.Tpo .deps/PdfEntry.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT HugeBVec.o -MD -MP -MF .deps/HugeBVec.Tpo -c -o HugeBVec.o `test -f 'feudal/HugeBVec.cc' || echo './'`feudal/HugeBVec.cc >mv -f .deps/HugeBVec.Tpo .deps/HugeBVec.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FindCells.o -MD -MP -MF .deps/FindCells.Tpo -c -o FindCells.o `test -f 'graph/FindCells.cc' || echo './'`graph/FindCells.cc >mv -f .deps/OffsetDistributionInterface.Tpo .deps/OffsetDistributionInterface.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Bases.o -MD -MP -MF .deps/Bases.Tpo -c -o Bases.o `test -f 'dna/Bases.cc' || echo './'`dna/Bases.cc >mv -f .deps/Bases.Tpo .deps/Bases.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FirstLookup.o -MD -MP -MF .deps/FirstLookup.Tpo -c -o FirstLookup.o `test -f 'lookup/FirstLookup.cc' || echo './'`lookup/FirstLookup.cc >mv -f .deps/FindCells.Tpo .deps/FindCells.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT KmerPathMuxSearcher.o -MD -MP -MF .deps/KmerPathMuxSearcher.Tpo -c -o KmerPathMuxSearcher.o `test -f 'paths/KmerPathMuxSearcher.cc' || echo './'`paths/KmerPathMuxSearcher.cc >mv -f .deps/UnibaseUtils.Tpo .deps/UnibaseUtils.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FeudalControlBlock.o -MD -MP -MF .deps/FeudalControlBlock.Tpo -c -o FeudalControlBlock.o `test -f 'feudal/FeudalControlBlock.cc' || echo './'`feudal/FeudalControlBlock.cc >mv -f .deps/KmerPathMuxSearcher.Tpo .deps/KmerPathMuxSearcher.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT AlignCollector.o -MD -MP -MF .deps/AlignCollector.Tpo -c -o AlignCollector.o `test -f 'lookup/AlignCollector.cc' || echo './'`lookup/AlignCollector.cc >mv -f .deps/FeudalControlBlock.Tpo .deps/FeudalControlBlock.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT PairsHandler.o -MD -MP -MF .deps/PairsHandler.Tpo -c -o PairsHandler.o PairsHandler.cc >In file included from lookup/AlignCollector.cc:15:0: >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = look_align, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = look_align, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >mv -f .deps/PairsHandler.Tpo .deps/PairsHandler.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT HoInterval.o -MD -MP -MF .deps/HoInterval.Tpo -c -o HoInterval.o `test -f 'math/HoInterval.cc' || echo './'`math/HoInterval.cc >mv -f .deps/PairedPair.Tpo .deps/PairedPair.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT PostPatcherBridgeGap.o -MD -MP -MF .deps/PostPatcherBridgeGap.Tpo -c -o PostPatcherBridgeGap.o `test -f 'paths/PostPatcherBridgeGap.cc' || echo './'`paths/PostPatcherBridgeGap.cc >mv -f .deps/FirstLookup.Tpo .deps/FirstLookup.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT DigraphPaths.o -MD -MP -MF .deps/DigraphPaths.Tpo -c -o DigraphPaths.o `test -f 'graph/DigraphPaths.cc' || echo './'`graph/DigraphPaths.cc >mv -f .deps/AlignCollector.Tpo .deps/AlignCollector.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ParseRange.o -MD -MP -MF .deps/ParseRange.Tpo -c -o ParseRange.o ParseRange.cc >mv -f .deps/ParseRange.Tpo .deps/ParseRange.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Vec.o -MD -MP -MF .deps/Vec.Tpo -c -o Vec.o Vec.cc >mv -f .deps/DigraphPaths.Tpo .deps/DigraphPaths.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT AgpFile.o -MD -MP -MF .deps/AgpFile.Tpo -c -o AgpFile.o `test -f 'agp/AgpFile.cc' || echo './'`agp/AgpFile.cc >In file included from Vec.cc:28:0: >VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = double, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = double, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = float, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = float, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = long int, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = long int, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = int, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = int, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = unsigned char, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = unsigned char, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = char, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = char, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >mv -f .deps/HoInterval.Tpo .deps/HoInterval.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT WorklistMP.o -MD -MP -MF .deps/WorklistMP.Tpo -c -o WorklistMP.o `test -f 'system/WorklistMP.cc' || echo './'`system/WorklistMP.cc >mv -f .deps/PostPatcherBridgeGap.Tpo .deps/PostPatcherBridgeGap.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT PairsManager.o -MD -MP -MF .deps/PairsManager.Tpo -c -o PairsManager.o PairsManager.cc >mv -f .deps/WorklistMP.Tpo .deps/WorklistMP.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT UnipathSeq.o -MD -MP -MF .deps/UnipathSeq.Tpo -c -o UnipathSeq.o `test -f 'paths/UnipathSeq.cc' || echo './'`paths/UnipathSeq.cc >mv -f .deps/UnipathSeq.Tpo .deps/UnipathSeq.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SmithWatAffine.o -MD -MP -MF .deps/SmithWatAffine.Tpo -c -o SmithWatAffine.o `test -f 'pairwise_aligners/SmithWatAffine.cc' || echo './'`pairwise_aligners/SmithWatAffine.cc >mv -f .deps/Vec.Tpo .deps/Vec.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT HitReceiver.o -MD -MP -MF .deps/HitReceiver.Tpo -c -o HitReceiver.o `test -f 'lookup/HitReceiver.cc' || echo './'`lookup/HitReceiver.cc >mv -f .deps/AgpFile.Tpo .deps/AgpFile.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT AlignAndMerge.o -MD -MP -MF .deps/AlignAndMerge.Tpo -c -o AlignAndMerge.o `test -f 'paths/AlignAndMerge.cc' || echo './'`paths/AlignAndMerge.cc >mv -f .deps/PairsManager.Tpo .deps/PairsManager.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT PerfectAlignerLG.o -MD -MP -MF .deps/PerfectAlignerLG.Tpo -c -o PerfectAlignerLG.o `test -f 'pairwise_aligners/PerfectAlignerLG.cc' || echo './'`pairwise_aligners/PerfectAlignerLG.cc >mv -f .deps/SmithWatAffine.Tpo .deps/SmithWatAffine.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FetchReads.o -MD -MP -MF .deps/FetchReads.Tpo -c -o FetchReads.o FetchReads.cc >mv -f .deps/HitReceiver.Tpo .deps/HitReceiver.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT TraceVal.o -MD -MP -MF .deps/TraceVal.Tpo -c -o TraceVal.o `test -f 'system/TraceVal.cc' || echo './'`system/TraceVal.cc >mv -f .deps/TraceVal.Tpo .deps/TraceVal.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT AnAssemblyClassUtil.o -MD -MP -MF .deps/AnAssemblyClassUtil.Tpo -c -o AnAssemblyClassUtil.o AnAssemblyClassUtil.cc >mv -f .deps/AlignAndMerge.Tpo .deps/AlignAndMerge.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT CloseUnipathGapsCore.o -MD -MP -MF .deps/CloseUnipathGapsCore.Tpo -c -o CloseUnipathGapsCore.o `test -f 'paths/CloseUnipathGapsCore.cc' || echo './'`paths/CloseUnipathGapsCore.cc >mv -f .deps/FetchReads.Tpo .deps/FetchReads.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ProcessFrequentKmers.o -MD -MP -MF .deps/ProcessFrequentKmers.Tpo -c -o ProcessFrequentKmers.o `test -f 'pairwise_aligners/ProcessFrequentKmers.cc' || echo './'`pairwise_aligners/ProcessFrequentKmers.cc >mv -f .deps/PerfectAlignerLG.Tpo .deps/PerfectAlignerLG.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ContigEvent.o -MD -MP -MF .deps/ContigEvent.Tpo -c -o ContigEvent.o ContigEvent.cc >mv -f .deps/AnAssemblyClassUtil.Tpo .deps/AnAssemblyClassUtil.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT MuxSearchPolicy.o -MD -MP -MF .deps/MuxSearchPolicy.Tpo -c -o MuxSearchPolicy.o `test -f 'paths/MuxSearchPolicy.cc' || echo './'`paths/MuxSearchPolicy.cc >mv -f .deps/ContigEvent.Tpo .deps/ContigEvent.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FastIfstream.o -MD -MP -MF .deps/FastIfstream.Tpo -c -o FastIfstream.o FastIfstream.cc >mv -f .deps/CloseUnipathGapsCore.Tpo .deps/CloseUnipathGapsCore.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Superb.o -MD -MP -MF .deps/Superb.Tpo -c -o Superb.o Superb.cc >mv -f .deps/MuxSearchPolicy.Tpo .deps/MuxSearchPolicy.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT AlignPairsToHyper.o -MD -MP -MF .deps/AlignPairsToHyper.Tpo -c -o AlignPairsToHyper.o `test -f 'paths/AlignPairsToHyper.cc' || echo './'`paths/AlignPairsToHyper.cc >./Vec.h: In function âvoid BinaryReadSubset(const String&, const vec<int>&, vec<T>&) [with T = superb_by_tig, String = FeudalString<char, std::char_traits<char> >]â: >./Vec.h:872:11: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >In file included from ./CoreTools.h:20:0, > from ./feudal/FieldVec.h:20, > from feudal/BaseVec.h:13, > from Basevector.h:12, > from Alignment.h:30, > from AnnotatedContig.h:14, > from Superb.cc:13: >Superb.cc: In function âvoid TestSuperbIndex(const String&)â: >Superb.cc:324:39: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/4.5.3/include/g++-v4/bits/stl_algobase.h:69:0, > from /usr/lib/gcc/x86_64-pc-linux-gnu/4.5.3/include/g++-v4/bits/stl_tree.h:62, > from /usr/lib/gcc/x86_64-pc-linux-gnu/4.5.3/include/g++-v4/map:60, > from AnnotatedContig.h:13, > from Superb.cc:13: >Superb.cc: In function âvoid ReadSuperbs(const String&, vec<superb>&)â: >Superb.cc:44:33: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >Superb.cc:48:42: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >Superb.cc:52:58: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >Superb.cc:53:57: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >Superb.cc:55:75: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >mv -f .deps/FastIfstream.Tpo .deps/FastIfstream.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT KmerRecord.o -MD -MP -MF .deps/KmerRecord.Tpo -c -o KmerRecord.o `test -f 'kmers/KmerRecord.cc' || echo './'`kmers/KmerRecord.cc >In file included from ./ReadLocationLG.h:13:0, > from ./paths/AlignSeqsToHyper.h:16, > from paths/AlignPairsToHyper.cc:27: >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = ReadLocationLG, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = ReadLocationLG, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >In file included from kmers/KmerRecord.cc:11:0: >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<10000>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<10000>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<4000>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<4000>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<2000>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<2000>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<1600>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<1600>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<1200>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<1200>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<1000>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<1000>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<640>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<640>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<544>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<544>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<500>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<500>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<400>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<400>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<368>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<368>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<320>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<320>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<200>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<200>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<192>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<192>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<100>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<100>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<96>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<96>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<88>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<88>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<80>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<80>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<68>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<68>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<65>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<65>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<64>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<64>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<52>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<52>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<49>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<49>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<48>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<48>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<40>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<40>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<36>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<36>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<32>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<32>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<29>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<29>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<28>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<28>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<26>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<26>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<24>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<24>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<21>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<21>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<20>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<20>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<19>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<19>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<16>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<16>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<12>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<12>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = kmer_with_count<8>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = kmer_with_count<8>, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >mv -f .deps/Superb.Tpo .deps/Superb.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT LookupTable.o -MD -MP -MF .deps/LookupTable.Tpo -c -o LookupTable.o `test -f 'lookup/LookupTable.cc' || echo './'`lookup/LookupTable.cc >In file included from ./feudal/FeudalString.h:29:0, > from ./feudal/CharString.h:19, > from ./String.h:13, > from ./system/System.h:16, > from ./CoreTools.h:17, > from ./feudal/FieldVec.h:20, > from ./feudal/BaseVec.h:13, > from ./Basevector.h:12, > from lookup/LookupTable.cc:14: >lookup/LookupTable.cc: In member function âvoid lookup_table::ReadChunk(int)â: >lookup/LookupTable.cc:420:43: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >lookup/LookupTable.cc:424:70: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >mv -f .deps/AlignPairsToHyper.Tpo .deps/AlignPairsToHyper.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT CGraphMass.o -MD -MP -MF .deps/CGraphMass.Tpo -c -o CGraphMass.o `test -f 'graph/CGraphMass.cc' || echo './'`graph/CGraphMass.cc >mv -f .deps/CGraphMass.Tpo .deps/CGraphMass.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT IntDistribution.o -MD -MP -MF .deps/IntDistribution.Tpo -c -o IntDistribution.o `test -f 'math/IntDistribution.cc' || echo './'`math/IntDistribution.cc >mv -f .deps/LookupTable.Tpo .deps/LookupTable.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SquashHyperFastavector.o -MD -MP -MF .deps/SquashHyperFastavector.Tpo -c -o SquashHyperFastavector.o `test -f 'paths/SquashHyperFastavector.cc' || echo './'`paths/SquashHyperFastavector.cc >mv -f .deps/IntDistribution.Tpo .deps/IntDistribution.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FragmentFiller.o -MD -MP -MF .deps/FragmentFiller.Tpo -c -o FragmentFiller.o `test -f 'paths/FragmentFiller.cc' || echo './'`paths/FragmentFiller.cc >mv -f .deps/SquashHyperFastavector.Tpo .deps/SquashHyperFastavector.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ScaffoldsUtils.o -MD -MP -MF .deps/ScaffoldsUtils.Tpo -c -o ScaffoldsUtils.o `test -f 'paths/ScaffoldsUtils.cc' || echo './'`paths/ScaffoldsUtils.cc >mv -f .deps/FragmentFiller.Tpo .deps/FragmentFiller.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT PseudoUnipathGapCloser.o -MD -MP -MF .deps/PseudoUnipathGapCloser.Tpo -c -o PseudoUnipathGapCloser.o `test -f 'paths/PseudoUnipathGapCloser.cc' || echo './'`paths/PseudoUnipathGapCloser.cc >mv -f .deps/ScaffoldsUtils.Tpo .deps/ScaffoldsUtils.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT MakeScaffoldsCloseBest.o -MD -MP -MF .deps/MakeScaffoldsCloseBest.Tpo -c -o MakeScaffoldsCloseBest.o `test -f 'paths/MakeScaffoldsCloseBest.cc' || echo './'`paths/MakeScaffoldsCloseBest.cc >mv -f .deps/PseudoUnipathGapCloser.Tpo .deps/PseudoUnipathGapCloser.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT QualNibbleVec.o -MD -MP -MF .deps/QualNibbleVec.Tpo -c -o QualNibbleVec.o `test -f 'feudal/QualNibbleVec.cc' || echo './'`feudal/QualNibbleVec.cc >mv -f .deps/QualNibbleVec.Tpo .deps/QualNibbleVec.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Fastavector.o -MD -MP -MF .deps/Fastavector.Tpo -c -o Fastavector.o Fastavector.cc >mv -f .deps/KmerRecord.Tpo .deps/KmerRecord.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT OffsetDistribution.o -MD -MP -MF .deps/OffsetDistribution.Tpo -c -o OffsetDistribution.o `test -f 'paths/OffsetDistribution.cc' || echo './'`paths/OffsetDistribution.cc >mv -f .deps/Fastavector.Tpo .deps/Fastavector.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ReadLocation.o -MD -MP -MF .deps/ReadLocation.Tpo -c -o ReadLocation.o ReadLocation.cc >In file included from ReadLocation.cc:21:0: >VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = read_location_short, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = read_location_short, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/4.5.3/include/g++-v4/x86_64-pc-linux-gnu/bits/c++allocator.h:34:0, > from /usr/lib/gcc/x86_64-pc-linux-gnu/4.5.3/include/g++-v4/bits/allocator.h:48, > from /usr/lib/gcc/x86_64-pc-linux-gnu/4.5.3/include/g++-v4/bits/stl_tree.h:63, > from /usr/lib/gcc/x86_64-pc-linux-gnu/4.5.3/include/g++-v4/map:60, > from ReadLocation.cc:14: >Vec.h: In function âvoid BinaryReadSubset0(const String&, const vec<int>&, vec<T>&) [with T = unsigned char, String = FeudalString<char, std::char_traits<char> >]â: >Vec.h:913:11: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >In file included from system/System.h:13:0, > from CoreTools.h:17, > from ReadLocation.cc:17: >ReadLocation.cc: In function âvoid ReadsToLocations(const String&, const vec<int>&, vec<vec<read_location> >&)â: >ReadLocation.cc:74:34: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >ReadLocation.cc:78:62: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >ReadLocation.cc:82:54: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >ReadLocation.cc:84:70: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >ReadLocation.cc:89:67: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >mv -f .deps/OffsetDistribution.Tpo .deps/OffsetDistribution.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT UseGDB.o -MD -MP -MF .deps/UseGDB.Tpo -c -o UseGDB.o `test -f 'system/UseGDB.cc' || echo './'`system/UseGDB.cc >mv -f .deps/UseGDB.Tpo .deps/UseGDB.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Kmer.o -MD -MP -MF .deps/Kmer.Tpo -c -o Kmer.o `test -f 'kmers/Kmer.cc' || echo './'`kmers/Kmer.cc >mv -f .deps/MakeScaffoldsCloseBest.Tpo .deps/MakeScaffoldsCloseBest.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT UnipathFixerTools.o -MD -MP -MF .deps/UnipathFixerTools.Tpo -c -o UnipathFixerTools.o `test -f 'paths/UnipathFixerTools.cc' || echo './'`paths/UnipathFixerTools.cc >mv -f .deps/Kmer.Tpo .deps/Kmer.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ImperfectLookup.o -MD -MP -MF .deps/ImperfectLookup.Tpo -c -o ImperfectLookup.o `test -f 'lookup/ImperfectLookup.cc' || echo './'`lookup/ImperfectLookup.cc >mv -f .deps/ReadLocation.Tpo .deps/ReadLocation.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT MakeScaffoldsScoredBest.o -MD -MP -MF .deps/MakeScaffoldsScoredBest.Tpo -c -o MakeScaffoldsScoredBest.o `test -f 'paths/MakeScaffoldsScoredBest.cc' || echo './'`paths/MakeScaffoldsScoredBest.cc >mv -f .deps/ImperfectLookup.Tpo .deps/ImperfectLookup.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SInsertion.o -MD -MP -MF .deps/SInsertion.Tpo -c -o SInsertion.o `test -f 'paths/SInsertion.cc' || echo './'`paths/SInsertion.cc >mv -f .deps/SInsertion.Tpo .deps/SInsertion.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT BaseVec.o -MD -MP -MF .deps/BaseVec.Tpo -c -o BaseVec.o `test -f 'feudal/BaseVec.cc' || echo './'`feudal/BaseVec.cc >mv -f .deps/MakeScaffoldsScoredBest.Tpo .deps/MakeScaffoldsScoredBest.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ReadLocationUtil.o -MD -MP -MF .deps/ReadLocationUtil.Tpo -c -o ReadLocationUtil.o ReadLocationUtil.cc >mv -f .deps/BaseVec.Tpo .deps/BaseVec.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FixScaffoldsCore.o -MD -MP -MF .deps/FixScaffoldsCore.Tpo -c -o FixScaffoldsCore.o `test -f 'paths/FixScaffoldsCore.cc' || echo './'`paths/FixScaffoldsCore.cc >mv -f .deps/ReadLocationUtil.Tpo .deps/ReadLocationUtil.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT LockedData.o -MD -MP -MF .deps/LockedData.Tpo -c -o LockedData.o `test -f 'system/LockedData.cc' || echo './'`system/LockedData.cc >mv -f .deps/LockedData.Tpo .deps/LockedData.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT MapUnibasesToContigs.o -MD -MP -MF .deps/MapUnibasesToContigs.Tpo -c -o MapUnibasesToContigs.o `test -f 'paths/MapUnibasesToContigs.cc' || echo './'`paths/MapUnibasesToContigs.cc >mv -f .deps/MapUnibasesToContigs.Tpo .deps/MapUnibasesToContigs.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Color.o -MD -MP -MF .deps/Color.Tpo -c -o Color.o `test -f 'graphics/Color.cc' || echo './'`graphics/Color.cc >mv -f .deps/ProcessFrequentKmers.Tpo .deps/ProcessFrequentKmers.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SimpleWalk.o -MD -MP -MF .deps/SimpleWalk.Tpo -c -o SimpleWalk.o `test -f 'paths/SimpleWalk.cc' || echo './'`paths/SimpleWalk.cc >mv -f .deps/UnipathFixerTools.Tpo .deps/UnipathFixerTools.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Eps.o -MD -MP -MF .deps/Eps.Tpo -c -o Eps.o `test -f 'graphics/Eps.cc' || echo './'`graphics/Eps.cc >mv -f .deps/Color.Tpo .deps/Color.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT MuxSearchAgent.o -MD -MP -MF .deps/MuxSearchAgent.Tpo -c -o MuxSearchAgent.o `test -f 'paths/MuxSearchAgent.cc' || echo './'`paths/MuxSearchAgent.cc >mv -f .deps/Eps.Tpo .deps/Eps.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT GetNextKmerPair.o -MD -MP -MF .deps/GetNextKmerPair.Tpo -c -o GetNextKmerPair.o `test -f 'kmers/GetNextKmerPair.cc' || echo './'`kmers/GetNextKmerPair.cc >mv -f .deps/FixScaffoldsCore.Tpo .deps/FixScaffoldsCore.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FastaFilestream.o -MD -MP -MF .deps/FastaFilestream.Tpo -c -o FastaFilestream.o FastaFilestream.cc >mv -f .deps/GetNextKmerPair.Tpo .deps/GetNextKmerPair.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT LocsHandlerLG.o -MD -MP -MF .deps/LocsHandlerLG.Tpo -c -o LocsHandlerLG.o LocsHandlerLG.cc >mv -f .deps/SimpleWalk.Tpo .deps/SimpleWalk.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ReadFillDatabase.o -MD -MP -MF .deps/ReadFillDatabase.Tpo -c -o ReadFillDatabase.o `test -f 'paths/ReadFillDatabase.cc' || echo './'`paths/ReadFillDatabase.cc >In file included from ReadLocationLG.h:13:0, > from LocsHandlerLG.cc:10: >VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = ReadLocationLG, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = ReadLocationLG, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >mv -f .deps/MuxSearchAgent.Tpo .deps/MuxSearchAgent.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Ulink.o -MD -MP -MF .deps/Ulink.Tpo -c -o Ulink.o `test -f 'paths/Ulink.cc' || echo './'`paths/Ulink.cc >mv -f .deps/ReadFillDatabase.Tpo .deps/ReadFillDatabase.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SmithWatBandedA.o -MD -MP -MF .deps/SmithWatBandedA.Tpo -c -o SmithWatBandedA.o `test -f 'pairwise_aligners/SmithWatBandedA.cc' || echo './'`pairwise_aligners/SmithWatBandedA.cc >mv -f .deps/FastaFilestream.Tpo .deps/FastaFilestream.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FlowAlignSummary.o -MD -MP -MF .deps/FlowAlignSummary.Tpo -c -o FlowAlignSummary.o `test -f 'lookup/FlowAlignSummary.cc' || echo './'`lookup/FlowAlignSummary.cc >mv -f .deps/Ulink.Tpo .deps/Ulink.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT PrettyPrintTable.o -MD -MP -MF .deps/PrettyPrintTable.Tpo -c -o PrettyPrintTable.o PrettyPrintTable.cc >mv -f .deps/FlowAlignSummary.Tpo .deps/FlowAlignSummary.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT PrintAlignment.o -MD -MP -MF .deps/PrintAlignment.Tpo -c -o PrintAlignment.o PrintAlignment.cc >mv -f .deps/LocsHandlerLG.Tpo .deps/LocsHandlerLG.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT MakeAlignsMethod.o -MD -MP -MF .deps/MakeAlignsMethod.Tpo -c -o MakeAlignsMethod.o `test -f 'pairwise_aligners/MakeAlignsMethod.cc' || echo './'`pairwise_aligners/MakeAlignsMethod.cc >mv -f .deps/SmithWatBandedA.Tpo .deps/SmithWatBandedA.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT CompressedSequence.o -MD -MP -MF .deps/CompressedSequence.Tpo -c -o CompressedSequence.o CompressedSequence.cc >mv -f .deps/PrettyPrintTable.Tpo .deps/PrettyPrintTable.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FirstLookupFinder.o -MD -MP -MF .deps/FirstLookupFinder.Tpo -c -o FirstLookupFinder.o `test -f 'lookup/FirstLookupFinder.cc' || echo './'`lookup/FirstLookupFinder.cc >mv -f .deps/PrintAlignment.Tpo .deps/PrintAlignment.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT BlockAlign.o -MD -MP -MF .deps/BlockAlign.Tpo -c -o BlockAlign.o BlockAlign.cc >mv -f .deps/FirstLookupFinder.Tpo .deps/FirstLookupFinder.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT RegapSupers.o -MD -MP -MF .deps/RegapSupers.Tpo -c -o RegapSupers.o `test -f 'paths/RegapSupers.cc' || echo './'`paths/RegapSupers.cc >mv -f .deps/BlockAlign.Tpo .deps/BlockAlign.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SuperMap.o -MD -MP -MF .deps/SuperMap.Tpo -c -o SuperMap.o SuperMap.cc >mv -f .deps/MakeAlignsMethod.Tpo .deps/MakeAlignsMethod.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Mux.o -MD -MP -MF .deps/Mux.Tpo -c -o Mux.o `test -f 'paths/Mux.cc' || echo './'`paths/Mux.cc >mv -f .deps/CompressedSequence.Tpo .deps/CompressedSequence.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT HashSimple.o -MD -MP -MF .deps/HashSimple.Tpo -c -o HashSimple.o HashSimple.cc >In file included from paths/Mux.cc:5:0: >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = Mux, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = Mux, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >mv -f .deps/HashSimple.Tpo .deps/HashSimple.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT AlignConsecutiveContigs.o -MD -MP -MF .deps/AlignConsecutiveContigs.Tpo -c -o AlignConsecutiveContigs.o `test -f 'pairwise_aligners/AlignConsecutiveContigs.cc' || echo './'`pairwise_aligners/AlignConsecutiveContigs.cc >mv -f .deps/SuperMap.Tpo .deps/SuperMap.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ReftigUtils.o -MD -MP -MF .deps/ReftigUtils.Tpo -c -o ReftigUtils.o `test -f 'paths/reporting/ReftigUtils.cc' || echo './'`paths/reporting/ReftigUtils.cc >mv -f .deps/Mux.Tpo .deps/Mux.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT HyperBasevector.o -MD -MP -MF .deps/HyperBasevector.Tpo -c -o HyperBasevector.o `test -f 'paths/HyperBasevector.cc' || echo './'`paths/HyperBasevector.cc >mv -f .deps/AlignConsecutiveContigs.Tpo .deps/AlignConsecutiveContigs.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT MaxMutmerFromMer.o -MD -MP -MF .deps/MaxMutmerFromMer.Tpo -c -o MaxMutmerFromMer.o `test -f 'pairwise_aligners/MaxMutmerFromMer.cc' || echo './'`pairwise_aligners/MaxMutmerFromMer.cc >mv -f .deps/ReftigUtils.Tpo .deps/ReftigUtils.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FeudalFileReader.o -MD -MP -MF .deps/FeudalFileReader.Tpo -c -o FeudalFileReader.o `test -f 'feudal/FeudalFileReader.cc' || echo './'`feudal/FeudalFileReader.cc >mv -f .deps/RegapSupers.Tpo .deps/RegapSupers.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT VecInserts.o -MD -MP -MF .deps/VecInserts.Tpo -c -o VecInserts.o VecInserts.cc >mv -f .deps/MaxMutmerFromMer.Tpo .deps/MaxMutmerFromMer.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SequenceEntropy.o -MD -MP -MF .deps/SequenceEntropy.Tpo -c -o SequenceEntropy.o `test -f 'random/SequenceEntropy.cc' || echo './'`random/SequenceEntropy.cc >mv -f .deps/FeudalFileReader.Tpo .deps/FeudalFileReader.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Utils.o -MD -MP -MF .deps/Utils.Tpo -c -o Utils.o `test -f 'system/Utils.cc' || echo './'`system/Utils.cc >mv -f .deps/Utils.Tpo .deps/Utils.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT BitVec.o -MD -MP -MF .deps/BitVec.Tpo -c -o BitVec.o `test -f 'feudal/BitVec.cc' || echo './'`feudal/BitVec.cc >mv -f .deps/SequenceEntropy.Tpo .deps/SequenceEntropy.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Oob.o -MD -MP -MF .deps/Oob.Tpo -c -o Oob.o `test -f 'feudal/Oob.cc' || echo './'`feudal/Oob.cc >mv -f .deps/HyperBasevector.Tpo .deps/HyperBasevector.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT RunAllPathsCommonRules.o -MD -MP -MF .deps/RunAllPathsCommonRules.Tpo -c -o RunAllPathsCommonRules.o `test -f 'paths/RunAllPathsCommonRules.cc' || echo './'`paths/RunAllPathsCommonRules.cc >mv -f .deps/Oob.Tpo .deps/Oob.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Intvector.o -MD -MP -MF .deps/Intvector.Tpo -c -o Intvector.o Intvector.cc >mv -f .deps/VecInserts.Tpo .deps/VecInserts.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Alignment.o -MD -MP -MF .deps/Alignment.Tpo -c -o Alignment.o Alignment.cc >mv -f .deps/BitVec.Tpo .deps/BitVec.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT KmerPathInterval.o -MD -MP -MF .deps/KmerPathInterval.Tpo -c -o KmerPathInterval.o `test -f 'paths/KmerPathInterval.cc' || echo './'`paths/KmerPathInterval.cc >mv -f .deps/Alignment.Tpo .deps/Alignment.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Hit.o -MD -MP -MF .deps/Hit.Tpo -c -o Hit.o `test -f 'lookup/Hit.cc' || echo './'`lookup/Hit.cc >In file included from paths/KmerPathInterval.cc:8:0: >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = new_tagged_rpint, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = new_tagged_rpint, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = big_tagged_rpint, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = big_tagged_rpint, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = tagged_rpint, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = tagged_rpint, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >mv -f .deps/Intvector.Tpo .deps/Intvector.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT CharString.o -MD -MP -MF .deps/CharString.Tpo -c -o CharString.o `test -f 'feudal/CharString.cc' || echo './'`feudal/CharString.cc >mv -f .deps/KmerPathInterval.Tpo .deps/KmerPathInterval.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT MiscUtil.o -MD -MP -MF .deps/MiscUtil.Tpo -c -o MiscUtil.o `test -f 'system/MiscUtil.cc' || echo './'`system/MiscUtil.cc >mv -f .deps/RunAllPathsCommonRules.Tpo .deps/RunAllPathsCommonRules.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SearchFastb2Core.o -MD -MP -MF .deps/SearchFastb2Core.Tpo -c -o SearchFastb2Core.o `test -f 'util/SearchFastb2Core.cc' || echo './'`util/SearchFastb2Core.cc >mv -f .deps/Hit.Tpo .deps/Hit.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT UnibaseCopyNumber2Core.o -MD -MP -MF .deps/UnibaseCopyNumber2Core.Tpo -c -o UnibaseCopyNumber2Core.o `test -f 'paths/UnibaseCopyNumber2Core.cc' || echo './'`paths/UnibaseCopyNumber2Core.cc >mv -f .deps/CharString.Tpo .deps/CharString.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT TimeUtils.o -MD -MP -MF .deps/TimeUtils.Tpo -c -o TimeUtils.o `test -f 'system/TimeUtils.cc' || echo './'`system/TimeUtils.cc >mv -f .deps/TimeUtils.Tpo .deps/TimeUtils.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FastaFilestreamPreview.o -MD -MP -MF .deps/FastaFilestreamPreview.Tpo -c -o FastaFilestreamPreview.o FastaFilestreamPreview.cc >mv -f .deps/UnibaseCopyNumber2Core.Tpo .deps/UnibaseCopyNumber2Core.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Matrix.o -MD -MP -MF .deps/Matrix.Tpo -c -o Matrix.o `test -f 'math/Matrix.cc' || echo './'`math/Matrix.cc >mv -f .deps/FastaFilestreamPreview.Tpo .deps/FastaFilestreamPreview.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT HyperFastavector.o -MD -MP -MF .deps/HyperFastavector.Tpo -c -o HyperFastavector.o `test -f 'paths/HyperFastavector.cc' || echo './'`paths/HyperFastavector.cc >mv -f .deps/Matrix.Tpo .deps/Matrix.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT WorklistUtils.o -MD -MP -MF .deps/WorklistUtils.Tpo -c -o WorklistUtils.o `test -f 'system/WorklistUtils.cc' || echo './'`system/WorklistUtils.cc >mv -f .deps/MiscUtil.Tpo .deps/MiscUtil.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT DotUtils.o -MD -MP -MF .deps/DotUtils.Tpo -c -o DotUtils.o `test -f 'graph/DotUtils.cc' || echo './'`graph/DotUtils.cc >mv -f .deps/WorklistUtils.Tpo .deps/WorklistUtils.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ReadPather.o -MD -MP -MF .deps/ReadPather.Tpo -c -o ReadPather.o `test -f 'kmers/ReadPather.cc' || echo './'`kmers/ReadPather.cc >mv -f .deps/DotUtils.Tpo .deps/DotUtils.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT InternalMerge.o -MD -MP -MF .deps/InternalMerge.Tpo -c -o InternalMerge.o `test -f 'paths/InternalMerge.cc' || echo './'`paths/InternalMerge.cc >mv -f .deps/HyperFastavector.Tpo .deps/HyperFastavector.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Unipath.o -MD -MP -MF .deps/Unipath.Tpo -c -o Unipath.o `test -f 'paths/Unipath.cc' || echo './'`paths/Unipath.cc >mv -f .deps/ReadPather.Tpo .deps/ReadPather.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT NegativeGapValidator.o -MD -MP -MF .deps/NegativeGapValidator.Tpo -c -o NegativeGapValidator.o `test -f 'paths/NegativeGapValidator.cc' || echo './'`paths/NegativeGapValidator.cc >mv -f .deps/NegativeGapValidator.Tpo .deps/NegativeGapValidator.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ScaffoldGraphIntegrity.o -MD -MP -MF .deps/ScaffoldGraphIntegrity.Tpo -c -o ScaffoldGraphIntegrity.o `test -f 'paths/ScaffoldGraphIntegrity.cc' || echo './'`paths/ScaffoldGraphIntegrity.cc >mv -f .deps/InternalMerge.Tpo .deps/InternalMerge.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT UnipathNhoodCommon.o -MD -MP -MF .deps/UnipathNhoodCommon.Tpo -c -o UnipathNhoodCommon.o `test -f 'paths/UnipathNhoodCommon.cc' || echo './'`paths/UnipathNhoodCommon.cc >mv -f .deps/Unipath.Tpo .deps/Unipath.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT AlignFromMutmersAndSW.o -MD -MP -MF .deps/AlignFromMutmersAndSW.Tpo -c -o AlignFromMutmersAndSW.o `test -f 'pairwise_aligners/AlignFromMutmersAndSW.cc' || echo './'`pairwise_aligners/AlignFromMutmersAndSW.cc >mv -f .deps/ScaffoldGraphIntegrity.Tpo .deps/ScaffoldGraphIntegrity.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Types.o -MD -MP -MF .deps/Types.Tpo -c -o Types.o `test -f 'system/Types.cc' || echo './'`system/Types.cc >mv -f .deps/Types.Tpo .deps/Types.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT LookupTab.o -MD -MP -MF .deps/LookupTab.Tpo -c -o LookupTab.o `test -f 'lookup/LookupTab.cc' || echo './'`lookup/LookupTab.cc >mv -f .deps/UnipathNhoodCommon.Tpo .deps/UnipathNhoodCommon.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT CLinFastavec.o -MD -MP -MF .deps/CLinFastavec.Tpo -c -o CLinFastavec.o `test -f 'paths/CLinFastavec.cc' || echo './'`paths/CLinFastavec.cc >mv -f .deps/SearchFastb2Core.Tpo .deps/SearchFastb2Core.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Sepdev.o -MD -MP -MF .deps/Sepdev.Tpo -c -o Sepdev.o `test -f 'paths/Sepdev.cc' || echo './'`paths/Sepdev.cc >mv -f .deps/AlignFromMutmersAndSW.Tpo .deps/AlignFromMutmersAndSW.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT EfastaTools.o -MD -MP -MF .deps/EfastaTools.Tpo -c -o EfastaTools.o `test -f 'efasta/EfastaTools.cc' || echo './'`efasta/EfastaTools.cc >mv -f .deps/LookupTab.Tpo .deps/LookupTab.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT AnnotatedContig.o -MD -MP -MF .deps/AnnotatedContig.Tpo -c -o AnnotatedContig.o AnnotatedContig.cc >mv -f .deps/Sepdev.Tpo .deps/Sepdev.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT BinsVec.o -MD -MP -MF .deps/BinsVec.Tpo -c -o BinsVec.o BinsVec.cc >mv -f .deps/CLinFastavec.Tpo .deps/CLinFastavec.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT MakeAlignsPathsParallelX.o -MD -MP -MF .deps/MakeAlignsPathsParallelX.Tpo -c -o MakeAlignsPathsParallelX.o `test -f 'paths/MakeAlignsPathsParallelX.cc' || echo './'`paths/MakeAlignsPathsParallelX.cc >mv -f .deps/BinsVec.Tpo .deps/BinsVec.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ReadPairing.o -MD -MP -MF .deps/ReadPairing.Tpo -c -o ReadPairing.o ReadPairing.cc >In file included from system/System.h:14:0, > from CoreTools.h:17, > from ReadPairing.cc:14: >ReadPairing.cc: In function âvoid ReadsToPairs(const String&, const vec<int>&, vec<read_pairing>&, const String&)â: >ReadPairing.cc:115:59: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/4.5.3/include/g++-v4/x86_64-pc-linux-gnu/bits/c++allocator.h:34:0, > from /usr/lib/gcc/x86_64-pc-linux-gnu/4.5.3/include/g++-v4/bits/allocator.h:48, > from /usr/lib/gcc/x86_64-pc-linux-gnu/4.5.3/include/g++-v4/string:43, > from /usr/lib/gcc/x86_64-pc-linux-gnu/4.5.3/include/g++-v4/bits/locale_classes.h:42, > from /usr/lib/gcc/x86_64-pc-linux-gnu/4.5.3/include/g++-v4/bits/ios_base.h:43, > from /usr/lib/gcc/x86_64-pc-linux-gnu/4.5.3/include/g++-v4/iomanip:42, > from system/System.h:12, > from CoreTools.h:17, > from ReadPairing.cc:14: >Vec.h: In function âvoid BinaryReadSubset(const String&, const vec<int>&, vec<T>&) [with T = int, String = FeudalString<char, std::char_traits<char> >]â: >Vec.h:872:11: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >mv -f .deps/EfastaTools.Tpo .deps/EfastaTools.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SortKmersD.o -MD -MP -MF .deps/SortKmersD.Tpo -c -o SortKmersD.o `test -f 'sort_kmers/SortKmersD.cc' || echo './'`sort_kmers/SortKmersD.cc >mv -f .deps/ReadPairing.Tpo .deps/ReadPairing.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT COffset.o -MD -MP -MF .deps/COffset.Tpo -c -o COffset.o `test -f 'paths/reporting/COffset.cc' || echo './'`paths/reporting/COffset.cc >mv -f .deps/AnnotatedContig.Tpo .deps/AnnotatedContig.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT MuxToPath.o -MD -MP -MF .deps/MuxToPath.Tpo -c -o MuxToPath.o `test -f 'paths/MuxToPath.cc' || echo './'`paths/MuxToPath.cc >mv -f .deps/MuxToPath.Tpo .deps/MuxToPath.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT AlignHyperKmerPath.o -MD -MP -MF .deps/AlignHyperKmerPath.Tpo -c -o AlignHyperKmerPath.o `test -f 'paths/AlignHyperKmerPath.cc' || echo './'`paths/AlignHyperKmerPath.cc >mv -f .deps/MakeAlignsPathsParallelX.Tpo .deps/MakeAlignsPathsParallelX.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Functions.o -MD -MP -MF .deps/Functions.Tpo -c -o Functions.o `test -f 'math/Functions.cc' || echo './'`math/Functions.cc >mv -f .deps/Functions.Tpo .deps/Functions.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Parallel.o -MD -MP -MF .deps/Parallel.Tpo -c -o Parallel.o `test -f 'system/Parallel.cc' || echo './'`system/Parallel.cc >mv -f .deps/COffset.Tpo .deps/COffset.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT AnAssemblyClass.o -MD -MP -MF .deps/AnAssemblyClass.Tpo -c -o AnAssemblyClass.o AnAssemblyClass.cc >mv -f .deps/Parallel.Tpo .deps/Parallel.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Alignlet.o -MD -MP -MF .deps/Alignlet.Tpo -c -o Alignlet.o `test -f 'paths/Alignlet.cc' || echo './'`paths/Alignlet.cc >In file included from paths/Alignlet.cc:20:0: >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = alignlet, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = alignlet, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >mv -f .deps/Alignlet.Tpo .deps/Alignlet.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT KmerPathDatabase.o -MD -MP -MF .deps/KmerPathDatabase.Tpo -c -o KmerPathDatabase.o `test -f 'paths/KmerPathDatabase.cc' || echo './'`paths/KmerPathDatabase.cc >mv -f .deps/KmerPathDatabase.Tpo .deps/KmerPathDatabase.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT MuxGraph.o -MD -MP -MF .deps/MuxGraph.Tpo -c -o MuxGraph.o `test -f 'paths/MuxGraph.cc' || echo './'`paths/MuxGraph.cc >mv -f .deps/AnAssemblyClass.Tpo .deps/AnAssemblyClass.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT HyperKmerPathCleaner.o -MD -MP -MF .deps/HyperKmerPathCleaner.Tpo -c -o HyperKmerPathCleaner.o `test -f 'paths/HyperKmerPathCleaner.cc' || echo './'`paths/HyperKmerPathCleaner.cc >mv -f .deps/MuxGraph.Tpo .deps/MuxGraph.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT PathReads.o -MD -MP -MF .deps/PathReads.Tpo -c -o PathReads.o `test -f 'paths/PathReads.cc' || echo './'`paths/PathReads.cc >mv -f .deps/AlignHyperKmerPath.Tpo .deps/AlignHyperKmerPath.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FastqToFastbQualb.o -MD -MP -MF .deps/FastqToFastbQualb.Tpo -c -o FastqToFastbQualb.o `test -f 'util/FastqToFastbQualb.cc' || echo './'`util/FastqToFastbQualb.cc >In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/4.5.3/include/g++-v4/istream:41:0, > from /usr/lib/gcc/x86_64-pc-linux-gnu/4.5.3/include/g++-v4/fstream:40, > from ./system/System.h:13, > from ./CoreTools.h:17, > from ./MainTools.h:16, > from util/FastqToFastbQualb.cc:21: >util/FastqToFastbQualb.cc: In function âbool NextFastqEntry(FILE*, FastqEntry&, char)â: >util/FastqToFastbQualb.cc:46:37: warning: ignoring return value of â__ssize_t getline(char**, size_t*, FILE*)â, declared with attribute warn_unused_result >util/FastqToFastbQualb.cc:47:44: warning: ignoring return value of â__ssize_t getline(char**, size_t*, FILE*)â, declared with attribute warn_unused_result >util/FastqToFastbQualb.cc:48:38: warning: ignoring return value of â__ssize_t getline(char**, size_t*, FILE*)â, declared with attribute warn_unused_result >mv -f .deps/PathReads.Tpo .deps/PathReads.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT LibCoverage.o -MD -MP -MF .deps/LibCoverage.Tpo -c -o LibCoverage.o `test -f 'paths/LibCoverage.cc' || echo './'`paths/LibCoverage.cc >mv -f .deps/FastqToFastbQualb.Tpo .deps/FastqToFastbQualb.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ErrorCorrectJumpNew.o -MD -MP -MF .deps/ErrorCorrectJumpNew.Tpo -c -o ErrorCorrectJumpNew.o `test -f 'paths/ErrorCorrectJumpNew.cc' || echo './'`paths/ErrorCorrectJumpNew.cc >mv -f .deps/HyperKmerPathCleaner.Tpo .deps/HyperKmerPathCleaner.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FindErrors.o -MD -MP -MF .deps/FindErrors.Tpo -c -o FindErrors.o `test -f 'paths/FindErrors.cc' || echo './'`paths/FindErrors.cc >mv -f .deps/ErrorCorrectJumpNew.Tpo .deps/ErrorCorrectJumpNew.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Fasta2Fastb.o -MD -MP -MF .deps/Fasta2Fastb.Tpo -c -o Fasta2Fastb.o `test -f 'util/Fasta2Fastb.cc' || echo './'`util/Fasta2Fastb.cc >mv -f .deps/LibCoverage.Tpo .deps/LibCoverage.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FastbAndQualb2Fastq.o -MD -MP -MF .deps/FastbAndQualb2Fastq.Tpo -c -o FastbAndQualb2Fastq.o `test -f 'util/FastbAndQualb2Fastq.cc' || echo './'`util/FastbAndQualb2Fastq.cc >mv -f .deps/Fasta2Fastb.Tpo .deps/Fasta2Fastb.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT RunAllPathsLG.o -MD -MP -MF .deps/RunAllPathsLG.Tpo -c -o RunAllPathsLG.o `test -f 'paths/RunAllPathsLG.cc' || echo './'`paths/RunAllPathsLG.cc >mv -f .deps/FastbAndQualb2Fastq.Tpo .deps/FastbAndQualb2Fastq.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT LittleHelpsBig.o -MD -MP -MF .deps/LittleHelpsBig.Tpo -c -o LittleHelpsBig.o `test -f 'paths/LittleHelpsBig.cc' || echo './'`paths/LittleHelpsBig.cc >mv -f .deps/FindErrors.Tpo .deps/FindErrors.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT CutTheGordianKnot.o -MD -MP -MF .deps/CutTheGordianKnot.Tpo -c -o CutTheGordianKnot.o `test -f 'paths/CutTheGordianKnot.cc' || echo './'`paths/CutTheGordianKnot.cc >In file included from ./ReadLocationLG.h:13:0, > from ./paths/GordianKnot.h:48, > from paths/CutTheGordianKnot.cc:40: >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = ReadLocationLG, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = ReadLocationLG, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >mv -f .deps/CutTheGordianKnot.Tpo .deps/CutTheGordianKnot.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT MergeNeighborhoods1.o -MD -MP -MF .deps/MergeNeighborhoods1.Tpo -c -o MergeNeighborhoods1.o `test -f 'paths/MergeNeighborhoods1.cc' || echo './'`paths/MergeNeighborhoods1.cc >mv -f .deps/SortKmersD.Tpo .deps/SortKmersD.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT CreateLookupTab.o -MD -MP -MF .deps/CreateLookupTab.Tpo -c -o CreateLookupTab.o `test -f 'lookup/CreateLookupTab.cc' || echo './'`lookup/CreateLookupTab.cc >mv -f .deps/LittleHelpsBig.Tpo .deps/LittleHelpsBig.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT AddUnibaseJunctions.o -MD -MP -MF .deps/AddUnibaseJunctions.Tpo -c -o AddUnibaseJunctions.o `test -f 'paths/AddUnibaseJunctions.cc' || echo './'`paths/AddUnibaseJunctions.cc >mv -f .deps/CreateLookupTab.Tpo .deps/CreateLookupTab.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT MakeLookupTable.o -MD -MP -MF .deps/MakeLookupTable.Tpo -c -o MakeLookupTable.o `test -f 'lookup/MakeLookupTable.cc' || echo './'`lookup/MakeLookupTable.cc >mv -f .deps/MergeNeighborhoods1.Tpo .deps/MergeNeighborhoods1.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT MergePairedFastbs.o -MD -MP -MF .deps/MergePairedFastbs.Tpo -c -o MergePairedFastbs.o `test -f 'split/MergePairedFastbs.cc' || echo './'`split/MergePairedFastbs.cc >mv -f .deps/AddUnibaseJunctions.Tpo .deps/AddUnibaseJunctions.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Fastb2Fasta.o -MD -MP -MF .deps/Fastb2Fasta.Tpo -c -o Fastb2Fasta.o `test -f 'util/Fastb2Fasta.cc' || echo './'`util/Fastb2Fasta.cc >mv -f .deps/MergePairedFastbs.Tpo .deps/MergePairedFastbs.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Quala2Qualb.o -MD -MP -MF .deps/Quala2Qualb.Tpo -c -o Quala2Qualb.o `test -f 'util/Quala2Qualb.cc' || echo './'`util/Quala2Qualb.cc >mv -f .deps/Fastb2Fasta.Tpo .deps/Fastb2Fasta.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ScaffoldGraphToGnuplot.o -MD -MP -MF .deps/ScaffoldGraphToGnuplot.Tpo -c -o ScaffoldGraphToGnuplot.o `test -f 'paths/reporting/ScaffoldGraphToGnuplot.cc' || echo './'`paths/reporting/ScaffoldGraphToGnuplot.cc >mv -f .deps/MakeLookupTable.Tpo .deps/MakeLookupTable.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT HyperToReftigs.o -MD -MP -MF .deps/HyperToReftigs.Tpo -c -o HyperToReftigs.o `test -f 'paths/reporting/HyperToReftigs.cc' || echo './'`paths/reporting/HyperToReftigs.cc >mv -f .deps/Quala2Qualb.Tpo .deps/Quala2Qualb.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SuperbStats.o -MD -MP -MF .deps/SuperbStats.Tpo -c -o SuperbStats.o `test -f 'reporting/SuperbStats.cc' || echo './'`reporting/SuperbStats.cc >mv -f .deps/ScaffoldGraphToGnuplot.Tpo .deps/ScaffoldGraphToGnuplot.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ScaffoldLayout.o -MD -MP -MF .deps/ScaffoldLayout.Tpo -c -o ScaffoldLayout.o `test -f 'reporting/ScaffoldLayout.cc' || echo './'`reporting/ScaffoldLayout.cc >mv -f .deps/SuperbStats.Tpo .deps/SuperbStats.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT EvaluateCorrectedPairs.o -MD -MP -MF .deps/EvaluateCorrectedPairs.Tpo -c -o EvaluateCorrectedPairs.o `test -f 'paths/EvaluateCorrectedPairs.cc' || echo './'`paths/EvaluateCorrectedPairs.cc >mv -f .deps/ScaffoldLayout.Tpo .deps/ScaffoldLayout.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT KmerSpectrum.o -MD -MP -MF .deps/KmerSpectrum.Tpo -c -o KmerSpectrum.o `test -f 'kmers/KmerSpectrum.cc' || echo './'`kmers/KmerSpectrum.cc >mv -f .deps/EvaluateCorrectedPairs.Tpo .deps/EvaluateCorrectedPairs.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT RebuildAssemblyFiles.o -MD -MP -MF .deps/RebuildAssemblyFiles.Tpo -c -o RebuildAssemblyFiles.o `test -f 'util/RebuildAssemblyFiles.cc' || echo './'`util/RebuildAssemblyFiles.cc >mv -f .deps/HyperToReftigs.Tpo .deps/HyperToReftigs.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SubmissionPrep.o -MD -MP -MF .deps/SubmissionPrep.Tpo -c -o SubmissionPrep.o `test -f 'paths/SubmissionPrep.cc' || echo './'`paths/SubmissionPrep.cc >mv -f .deps/RebuildAssemblyFiles.Tpo .deps/RebuildAssemblyFiles.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT RecoverUnipaths.o -MD -MP -MF .deps/RecoverUnipaths.Tpo -c -o RecoverUnipaths.o `test -f 'paths/RecoverUnipaths.cc' || echo './'`paths/RecoverUnipaths.cc >mv -f .deps/KmerSpectrum.Tpo .deps/KmerSpectrum.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT LongReadPostPatcher.o -MD -MP -MF .deps/LongReadPostPatcher.Tpo -c -o LongReadPostPatcher.o `test -f 'paths/LongReadPostPatcher.cc' || echo './'`paths/LongReadPostPatcher.cc >paths/RunAllPathsLG.cc: In function âint main(int, char**)â: >paths/RunAllPathsLG.cc:53:5: note: variable tracking size limit exceeded with -fvar-tracking-assignments, retrying without >mv -f .deps/SubmissionPrep.Tpo .deps/SubmissionPrep.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT AssemblyAccuracy.o -MD -MP -MF .deps/AssemblyAccuracy.Tpo -c -o AssemblyAccuracy.o `test -f 'reporting/AssemblyAccuracy.cc' || echo './'`reporting/AssemblyAccuracy.cc >mv -f .deps/RunAllPathsLG.Tpo .deps/RunAllPathsLG.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT UnipathEval.o -MD -MP -MF .deps/UnipathEval.Tpo -c -o UnipathEval.o `test -f 'paths/UnipathEval.cc' || echo './'`paths/UnipathEval.cc >mv -f .deps/RecoverUnipaths.Tpo .deps/RecoverUnipaths.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT PrepareGenome.o -MD -MP -MF .deps/PrepareGenome.Tpo -c -o PrepareGenome.o `test -f 'paths/simulation/PrepareGenome.cc' || echo './'`paths/simulation/PrepareGenome.cc >mv -f .deps/LongReadPostPatcher.Tpo .deps/LongReadPostPatcher.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ShaveUnipathGraph.o -MD -MP -MF .deps/ShaveUnipathGraph.Tpo -c -o ShaveUnipathGraph.o `test -f 'paths/ShaveUnipathGraph.cc' || echo './'`paths/ShaveUnipathGraph.cc >mv -f .deps/PrepareGenome.Tpo .deps/PrepareGenome.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT DumpHyper.o -MD -MP -MF .deps/DumpHyper.Tpo -c -o DumpHyper.o `test -f 'paths/DumpHyper.cc' || echo './'`paths/DumpHyper.cc >mv -f .deps/ShaveUnipathGraph.Tpo .deps/ShaveUnipathGraph.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT TagCircularScaffolds.o -MD -MP -MF .deps/TagCircularScaffolds.Tpo -c -o TagCircularScaffolds.o `test -f 'paths/TagCircularScaffolds.cc' || echo './'`paths/TagCircularScaffolds.cc >mv -f .deps/DumpHyper.Tpo .deps/DumpHyper.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT CloseUnipathGaps.o -MD -MP -MF .deps/CloseUnipathGaps.Tpo -c -o CloseUnipathGaps.o `test -f 'paths/CloseUnipathGaps.cc' || echo './'`paths/CloseUnipathGaps.cc >mv -f .deps/AssemblyAccuracy.Tpo .deps/AssemblyAccuracy.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT UnibaseCopyNumber3.o -MD -MP -MF .deps/UnibaseCopyNumber3.Tpo -c -o UnibaseCopyNumber3.o `test -f 'paths/UnibaseCopyNumber3.cc' || echo './'`paths/UnibaseCopyNumber3.cc >mv -f .deps/UnipathEval.Tpo .deps/UnipathEval.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT UnibaseCopyNumber2.o -MD -MP -MF .deps/UnibaseCopyNumber2.Tpo -c -o UnibaseCopyNumber2.o `test -f 'paths/UnibaseCopyNumber2.cc' || echo './'`paths/UnibaseCopyNumber2.cc >mv -f .deps/TagCircularScaffolds.Tpo .deps/TagCircularScaffolds.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ScaffoldAccuracy.o -MD -MP -MF .deps/ScaffoldAccuracy.Tpo -c -o ScaffoldAccuracy.o `test -f 'reporting/ScaffoldAccuracy.cc' || echo './'`reporting/ScaffoldAccuracy.cc >mv -f .deps/ScaffoldAccuracy.Tpo .deps/ScaffoldAccuracy.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT QueryLookupTable.o -MD -MP -MF .deps/QueryLookupTable.Tpo -c -o QueryLookupTable.o `test -f 'lookup/QueryLookupTable.cc' || echo './'`lookup/QueryLookupTable.cc >mv -f .deps/QueryLookupTable.Tpo .deps/QueryLookupTable.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FastbStats.o -MD -MP -MF .deps/FastbStats.Tpo -c -o FastbStats.o `test -f 'reporting/FastbStats.cc' || echo './'`reporting/FastbStats.cc >mv -f .deps/FastbStats.Tpo .deps/FastbStats.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ReplacePairsStats.o -MD -MP -MF .deps/ReplacePairsStats.Tpo -c -o ReplacePairsStats.o `test -f 'util/ReplacePairsStats.cc' || echo './'`util/ReplacePairsStats.cc >mv -f .deps/ReplacePairsStats.Tpo .deps/ReplacePairsStats.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FastbQualbTrimReverse.o -MD -MP -MF .deps/FastbQualbTrimReverse.Tpo -c -o FastbQualbTrimReverse.o `test -f 'util/FastbQualbTrimReverse.cc' || echo './'`util/FastbQualbTrimReverse.cc >mv -f .deps/FastbQualbTrimReverse.Tpo .deps/FastbQualbTrimReverse.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT LongReadUnipathPatcher.o -MD -MP -MF .deps/LongReadUnipathPatcher.Tpo -c -o LongReadUnipathPatcher.o `test -f 'paths/LongReadUnipathPatcher.cc' || echo './'`paths/LongReadUnipathPatcher.cc >mv -f .deps/UnibaseCopyNumber2.Tpo .deps/UnibaseCopyNumber2.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT UnipatherBig.o -MD -MP -MF .deps/UnipatherBig.Tpo -c -o UnipatherBig.o `test -f 'paths/UnipatherBig.cc' || echo './'`paths/UnipatherBig.cc >mv -f .deps/UnibaseCopyNumber3.Tpo .deps/UnibaseCopyNumber3.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT AllPathsReport.o -MD -MP -MF .deps/AllPathsReport.Tpo -c -o AllPathsReport.o `test -f 'paths/reporting/AllPathsReport.cc' || echo './'`paths/reporting/AllPathsReport.cc >mv -f .deps/CloseUnipathGaps.Tpo .deps/CloseUnipathGaps.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FillFragments.o -MD -MP -MF .deps/FillFragments.Tpo -c -o FillFragments.o `test -f 'paths/FillFragments.cc' || echo './'`paths/FillFragments.cc >mv -f .deps/AllPathsReport.Tpo .deps/AllPathsReport.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Mixmer.o -MD -MP -MF .deps/Mixmer.Tpo -c -o Mixmer.o `test -f 'paths/Mixmer.cc' || echo './'`paths/Mixmer.cc >mv -f .deps/UnipatherBig.Tpo .deps/UnipatherBig.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Qualb2Quala.o -MD -MP -MF .deps/Qualb2Quala.Tpo -c -o Qualb2Quala.o `test -f 'util/Qualb2Quala.cc' || echo './'`util/Qualb2Quala.cc >mv -f .deps/FillFragments.Tpo .deps/FillFragments.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT AlignPairsToFasta.o -MD -MP -MF .deps/AlignPairsToFasta.Tpo -c -o AlignPairsToFasta.o `test -f 'paths/AlignPairsToFasta.cc' || echo './'`paths/AlignPairsToFasta.cc >mv -f .deps/Qualb2Quala.Tpo .deps/Qualb2Quala.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT DisplayLocs.o -MD -MP -MF .deps/DisplayLocs.Tpo -c -o DisplayLocs.o `test -f 'paths/probe/DisplayLocs.cc' || echo './'`paths/probe/DisplayLocs.cc >mv -f .deps/AlignPairsToFasta.Tpo .deps/AlignPairsToFasta.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT GenomeReadLocsLG.o -MD -MP -MF .deps/GenomeReadLocsLG.Tpo -c -o GenomeReadLocsLG.o `test -f 'paths/GenomeReadLocsLG.cc' || echo './'`paths/GenomeReadLocsLG.cc >In file included from ./ReadLocationLG.h:13:0, > from paths/GenomeReadLocsLG.cc:26: >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = ReadLocationLG, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = ReadLocationLG, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >mv -f .deps/DisplayLocs.Tpo .deps/DisplayLocs.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FilterPrunedReads.o -MD -MP -MF .deps/FilterPrunedReads.Tpo -c -o FilterPrunedReads.o `test -f 'paths/FilterPrunedReads.cc' || echo './'`paths/FilterPrunedReads.cc >mv -f .deps/GenomeReadLocsLG.Tpo .deps/GenomeReadLocsLG.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Fastb.o -MD -MP -MF .deps/Fastb.Tpo -c -o Fastb.o `test -f 'util/Fastb.cc' || echo './'`util/Fastb.cc >mv -f .deps/FilterPrunedReads.Tpo .deps/FilterPrunedReads.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT MapSeeds.o -MD -MP -MF .deps/MapSeeds.Tpo -c -o MapSeeds.o `test -f 'paths/reporting/MapSeeds.cc' || echo './'`paths/reporting/MapSeeds.cc >mv -f .deps/Fastb.Tpo .deps/Fastb.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT LocalizeReadsLG.o -MD -MP -MF .deps/LocalizeReadsLG.Tpo -c -o LocalizeReadsLG.o `test -f 'paths/LocalizeReadsLG.cc' || echo './'`paths/LocalizeReadsLG.cc >In file included from ./ReadLocationLG.h:13:0, > from paths/LocalizeReadsLG.cc:74: >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = ReadLocationLG, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = ReadLocationLG, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >mv -f .deps/MapSeeds.Tpo .deps/MapSeeds.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SelectSeeds.o -MD -MP -MF .deps/SelectSeeds.Tpo -c -o SelectSeeds.o `test -f 'paths/SelectSeeds.cc' || echo './'`paths/SelectSeeds.cc >mv -f .deps/Mixmer.Tpo .deps/Mixmer.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT DisplayLibraryStats.o -MD -MP -MF .deps/DisplayLibraryStats.Tpo -c -o DisplayLibraryStats.o `test -f 'util/DisplayLibraryStats.cc' || echo './'`util/DisplayLibraryStats.cc >In file included from ./ReadLocationLG.h:13:0, > from paths/SelectSeeds.cc:44: >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = ReadLocationLG, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = ReadLocationLG, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >mv -f .deps/DisplayLibraryStats.Tpo .deps/DisplayLibraryStats.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT PickTheRightBranch.o -MD -MP -MF .deps/PickTheRightBranch.Tpo -c -o PickTheRightBranch.o `test -f 'paths/PickTheRightBranch.cc' || echo './'`paths/PickTheRightBranch.cc >mv -f .deps/LongReadUnipathPatcher.Tpo .deps/LongReadUnipathPatcher.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SamplePairedReadStatsOld.o -MD -MP -MF .deps/SamplePairedReadStatsOld.Tpo -c -o SamplePairedReadStatsOld.o `test -f 'paths/SamplePairedReadStatsOld.cc' || echo './'`paths/SamplePairedReadStatsOld.cc >mv -f .deps/LocalizeReadsLG.Tpo .deps/LocalizeReadsLG.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT EfastaToFasta.o -MD -MP -MF .deps/EfastaToFasta.Tpo -c -o EfastaToFasta.o `test -f 'efasta/EfastaToFasta.cc' || echo './'`efasta/EfastaToFasta.cc >mv -f .deps/SelectSeeds.Tpo .deps/SelectSeeds.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SamplePairedReadStats.o -MD -MP -MF .deps/SamplePairedReadStats.Tpo -c -o SamplePairedReadStats.o `test -f 'paths/SamplePairedReadStats.cc' || echo './'`paths/SamplePairedReadStats.cc >mv -f .deps/EfastaToFasta.Tpo .deps/EfastaToFasta.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT UniquifyAligns2.o -MD -MP -MF .deps/UniquifyAligns2.Tpo -c -o UniquifyAligns2.o `test -f 'lookup/UniquifyAligns2.cc' || echo './'`lookup/UniquifyAligns2.cc >mv -f .deps/UniquifyAligns2.Tpo .deps/UniquifyAligns2.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT MemMonitor.o -MD -MP -MF .deps/MemMonitor.Tpo -c -o MemMonitor.o `test -f 'util/MemMonitor.cc' || echo './'`util/MemMonitor.cc >mv -f .deps/SamplePairedReadStatsOld.Tpo .deps/SamplePairedReadStatsOld.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ShortQueryLookup.o -MD -MP -MF .deps/ShortQueryLookup.Tpo -c -o ShortQueryLookup.o `test -f 'lookup/ShortQueryLookup.cc' || echo './'`lookup/ShortQueryLookup.cc >mv -f .deps/MemMonitor.Tpo .deps/MemMonitor.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT CacheReadsMerge.o -MD -MP -MF .deps/CacheReadsMerge.Tpo -c -o CacheReadsMerge.o `test -f 'allpaths_cache/CacheReadsMerge.cc' || echo './'`allpaths_cache/CacheReadsMerge.cc >mv -f .deps/ShortQueryLookup.Tpo .deps/ShortQueryLookup.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT CommonPather.o -MD -MP -MF .deps/CommonPather.Tpo -c -o CommonPather.o `test -f 'paths/CommonPather.cc' || echo './'`paths/CommonPather.cc >mv -f .deps/SamplePairedReadStats.Tpo .deps/SamplePairedReadStats.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SamplePairedReadDistributions.o -MD -MP -MF .deps/SamplePairedReadDistributions.Tpo -c -o SamplePairedReadDistributions.o `test -f 'paths/SamplePairedReadDistributions.cc' || echo './'`paths/SamplePairedReadDistributions.cc >mv -f .deps/CacheReadsMerge.Tpo .deps/CacheReadsMerge.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT AssemblyCoverage.o -MD -MP -MF .deps/AssemblyCoverage.Tpo -c -o AssemblyCoverage.o `test -f 'reporting/AssemblyCoverage.cc' || echo './'`reporting/AssemblyCoverage.cc >mv -f .deps/CommonPather.Tpo .deps/CommonPather.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT MakeScaffoldsLG.o -MD -MP -MF .deps/MakeScaffoldsLG.Tpo -c -o MakeScaffoldsLG.o `test -f 'paths/MakeScaffoldsLG.cc' || echo './'`paths/MakeScaffoldsLG.cc >mv -f .deps/SamplePairedReadDistributions.Tpo .deps/SamplePairedReadDistributions.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT GenerateLengthsFile.o -MD -MP -MF .deps/GenerateLengthsFile.Tpo -c -o GenerateLengthsFile.o `test -f 'util/GenerateLengthsFile.cc' || echo './'`util/GenerateLengthsFile.cc >mv -f .deps/AssemblyCoverage.Tpo .deps/AssemblyCoverage.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT EvalScaffolds.o -MD -MP -MF .deps/EvalScaffolds.Tpo -c -o EvalScaffolds.o `test -f 'reporting/EvalScaffolds.cc' || echo './'`reporting/EvalScaffolds.cc >mv -f .deps/GenerateLengthsFile.Tpo .deps/GenerateLengthsFile.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT PostPatcherBuildJoins.o -MD -MP -MF .deps/PostPatcherBuildJoins.Tpo -c -o PostPatcherBuildJoins.o `test -f 'paths/PostPatcherBuildJoins.cc' || echo './'`paths/PostPatcherBuildJoins.cc >mv -f .deps/MakeScaffoldsLG.Tpo .deps/MakeScaffoldsLG.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT PatcherCottage.o -MD -MP -MF .deps/PatcherCottage.Tpo -c -o PatcherCottage.o `test -f 'paths/PatcherCottage.cc' || echo './'`paths/PatcherCottage.cc >mv -f .deps/EvalScaffolds.Tpo .deps/EvalScaffolds.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FastaToEfasta.o -MD -MP -MF .deps/FastaToEfasta.Tpo -c -o FastaToEfasta.o `test -f 'efasta/FastaToEfasta.cc' || echo './'`efasta/FastaToEfasta.cc >mv -f .deps/PickTheRightBranch.Tpo .deps/PickTheRightBranch.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT MergeNeighborhoods2.o -MD -MP -MF .deps/MergeNeighborhoods2.Tpo -c -o MergeNeighborhoods2.o `test -f 'paths/MergeNeighborhoods2.cc' || echo './'`paths/MergeNeighborhoods2.cc >mv -f .deps/PatcherCottage.Tpo .deps/PatcherCottage.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT MergeNeighborhoods3.o -MD -MP -MF .deps/MergeNeighborhoods3.Tpo -c -o MergeNeighborhoods3.o `test -f 'paths/MergeNeighborhoods3.cc' || echo './'`paths/MergeNeighborhoods3.cc >mv -f .deps/FastaToEfasta.Tpo .deps/FastaToEfasta.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SplitUnibases.o -MD -MP -MF .deps/SplitUnibases.Tpo -c -o SplitUnibases.o `test -f 'split/SplitUnibases.cc' || echo './'`split/SplitUnibases.cc >mv -f .deps/PostPatcherBuildJoins.Tpo .deps/PostPatcherBuildJoins.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT UnipathLocsLG.o -MD -MP -MF .deps/UnipathLocsLG.Tpo -c -o UnipathLocsLG.o `test -f 'paths/UnipathLocsLG.cc' || echo './'`paths/UnipathLocsLG.cc >In file included from ./ReadLocationLG.h:13:0, > from paths/UnipathLocsLG.cc:29: >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = ReadLocationLG, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = ReadLocationLG, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >mv -f .deps/MergeNeighborhoods3.Tpo .deps/MergeNeighborhoods3.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT RemoveDodgyReads.o -MD -MP -MF .deps/RemoveDodgyReads.Tpo -c -o RemoveDodgyReads.o `test -f 'fix_input/RemoveDodgyReads.cc' || echo './'`fix_input/RemoveDodgyReads.cc >mv -f .deps/SplitUnibases.Tpo .deps/SplitUnibases.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT EvaluateGaps.o -MD -MP -MF .deps/EvaluateGaps.Tpo -c -o EvaluateGaps.o `test -f 'reporting/EvaluateGaps.cc' || echo './'`reporting/EvaluateGaps.cc >mv -f .deps/UnipathLocsLG.Tpo .deps/UnipathLocsLG.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT SelectRandomPairs.o -MD -MP -MF .deps/SelectRandomPairs.Tpo -c -o SelectRandomPairs.o `test -f 'select/SelectRandomPairs.cc' || echo './'`select/SelectRandomPairs.cc >mv -f .deps/RemoveDodgyReads.Tpo .deps/RemoveDodgyReads.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT MergeReadSets.o -MD -MP -MF .deps/MergeReadSets.Tpo -c -o MergeReadSets.o `test -f 'paths/MergeReadSets.cc' || echo './'`paths/MergeReadSets.cc >mv -f .deps/EvaluateGaps.Tpo .deps/EvaluateGaps.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT GenomeToPaths.o -MD -MP -MF .deps/GenomeToPaths.Tpo -c -o GenomeToPaths.o `test -f 'paths/simulation/GenomeToPaths.cc' || echo './'`paths/simulation/GenomeToPaths.cc >mv -f .deps/MergeNeighborhoods2.Tpo .deps/MergeNeighborhoods2.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ErrorCorrectJump.o -MD -MP -MF .deps/ErrorCorrectJump.Tpo -c -o ErrorCorrectJump.o `test -f 'paths/ErrorCorrectJump.cc' || echo './'`paths/ErrorCorrectJump.cc >mv -f .deps/SelectRandomPairs.Tpo .deps/SelectRandomPairs.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT BuildUnipathLinkGraphsLG.o -MD -MP -MF .deps/BuildUnipathLinkGraphsLG.Tpo -c -o BuildUnipathLinkGraphsLG.o `test -f 'paths/BuildUnipathLinkGraphsLG.cc' || echo './'`paths/BuildUnipathLinkGraphsLG.cc >mv -f .deps/GenomeToPaths.Tpo .deps/GenomeToPaths.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT MakeRcDb.o -MD -MP -MF .deps/MakeRcDb.Tpo -c -o MakeRcDb.o `test -f 'paths/MakeRcDb.cc' || echo './'`paths/MakeRcDb.cc >In file included from ./ReadLocationLG.h:13:0, > from paths/BuildUnipathLinkGraphsLG.cc:14: >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = ReadLocationLG, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >./VecTemplate.h: In function âvoid BinaryReadSubset2Or3(const String&, const vec<int>&, vec<T>&, Bool, int) [with T = ReadLocationLG, String = FeudalString<char, std::char_traits<char> >, Bool = unsigned char]â: >./VecTemplate.h:231:5: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >mv -f .deps/MergeReadSets.Tpo .deps/MergeReadSets.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT AlignUnibasesToRef.o -MD -MP -MF .deps/AlignUnibasesToRef.Tpo -c -o AlignUnibasesToRef.o `test -f 'paths/reporting/AlignUnibasesToRef.cc' || echo './'`paths/reporting/AlignUnibasesToRef.cc >mv -f .deps/MakeRcDb.Tpo .deps/MakeRcDb.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT TrueUnipathCoverage.o -MD -MP -MF .deps/TrueUnipathCoverage.Tpo -c -o TrueUnipathCoverage.o `test -f 'paths/simulation/TrueUnipathCoverage.cc' || echo './'`paths/simulation/TrueUnipathCoverage.cc >mv -f .deps/BuildUnipathLinkGraphsLG.Tpo .deps/BuildUnipathLinkGraphsLG.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT UnibasesFromTwoSources.o -MD -MP -MF .deps/UnibasesFromTwoSources.Tpo -c -o UnibasesFromTwoSources.o `test -f 'paths/UnibasesFromTwoSources.cc' || echo './'`paths/UnibasesFromTwoSources.cc >mv -f .deps/TrueUnipathCoverage.Tpo .deps/TrueUnipathCoverage.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT EvalUnipathLinkGraphs.o -MD -MP -MF .deps/EvalUnipathLinkGraphs.Tpo -c -o EvalUnipathLinkGraphs.o `test -f 'paths/reporting/EvalUnipathLinkGraphs.cc' || echo './'`paths/reporting/EvalUnipathLinkGraphs.cc >mv -f .deps/AlignUnibasesToRef.Tpo .deps/AlignUnibasesToRef.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT QualbStats.o -MD -MP -MF .deps/QualbStats.Tpo -c -o QualbStats.o `test -f 'reporting/QualbStats.cc' || echo './'`reporting/QualbStats.cc >mv -f .deps/ErrorCorrectJump.Tpo .deps/ErrorCorrectJump.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT UnipathPatcher.o -MD -MP -MF .deps/UnipathPatcher.Tpo -c -o UnipathPatcher.o `test -f 'paths/UnipathPatcher.cc' || echo './'`paths/UnipathPatcher.cc >mv -f .deps/UnibasesFromTwoSources.Tpo .deps/UnibasesFromTwoSources.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT GenerateMapUnibasesToContigs.o -MD -MP -MF .deps/GenerateMapUnibasesToContigs.Tpo -c -o GenerateMapUnibasesToContigs.o `test -f 'paths/GenerateMapUnibasesToContigs.cc' || echo './'`paths/GenerateMapUnibasesToContigs.cc >mv -f .deps/QualbStats.Tpo .deps/QualbStats.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT RemoveHighCNAligns.o -MD -MP -MF .deps/RemoveHighCNAligns.Tpo -c -o RemoveHighCNAligns.o `test -f 'paths/RemoveHighCNAligns.cc' || echo './'`paths/RemoveHighCNAligns.cc >mv -f .deps/EvalUnipathLinkGraphs.Tpo .deps/EvalUnipathLinkGraphs.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT AlignReads.o -MD -MP -MF .deps/AlignReads.Tpo -c -o AlignReads.o `test -f 'paths/AlignReads.cc' || echo './'`paths/AlignReads.cc >mv -f .deps/GenerateMapUnibasesToContigs.Tpo .deps/GenerateMapUnibasesToContigs.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT CleanAssembly.o -MD -MP -MF .deps/CleanAssembly.Tpo -c -o CleanAssembly.o `test -f 'paths/CleanAssembly.cc' || echo './'`paths/CleanAssembly.cc >mv -f .deps/RemoveHighCNAligns.Tpo .deps/RemoveHighCNAligns.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FixSomeIndels.o -MD -MP -MF .deps/FixSomeIndels.Tpo -c -o FixSomeIndels.o `test -f 'paths/FixSomeIndels.cc' || echo './'`paths/FixSomeIndels.cc >mv -f .deps/CleanAssembly.Tpo .deps/CleanAssembly.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT Unipather.o -MD -MP -MF .deps/Unipather.Tpo -c -o Unipather.o `test -f 'paths/Unipather.cc' || echo './'`paths/Unipather.cc >mv -f .deps/AlignReads.Tpo .deps/AlignReads.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT MergeNeighborhoods.o -MD -MP -MF .deps/MergeNeighborhoods.Tpo -c -o MergeNeighborhoods.o `test -f 'paths/MergeNeighborhoods.cc' || echo './'`paths/MergeNeighborhoods.cc >In file included from paths/FixSomeIndels.cc:28:0: >./VecTemplate.h: In function âvoid BinaryReadRange2Or3(const String&, longlong, longlong, vec<T>&, int) [with T = triple<long int, int, int>, String = FeudalString<char, std::char_traits<char> >, longlong = long int]â: >./VecTemplate.h:268:20: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >mv -f .deps/Unipather.Tpo .deps/Unipather.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ValidateAllPathsInputs.o -MD -MP -MF .deps/ValidateAllPathsInputs.Tpo -c -o ValidateAllPathsInputs.o `test -f 'paths/ValidateAllPathsInputs.cc' || echo './'`paths/ValidateAllPathsInputs.cc >mv -f .deps/MergeNeighborhoods.Tpo .deps/MergeNeighborhoods.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT PathsToLocs.o -MD -MP -MF .deps/PathsToLocs.Tpo -c -o PathsToLocs.o `test -f 'paths/simulation/PathsToLocs.cc' || echo './'`paths/simulation/PathsToLocs.cc >mv -f .deps/ValidateAllPathsInputs.Tpo .deps/ValidateAllPathsInputs.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT PostPatcher.o -MD -MP -MF .deps/PostPatcher.Tpo -c -o PostPatcher.o `test -f 'paths/PostPatcher.cc' || echo './'`paths/PostPatcher.cc >mv -f .deps/UnipathPatcher.Tpo .deps/UnipathPatcher.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT FlattenHKP.o -MD -MP -MF .deps/FlattenHKP.Tpo -c -o FlattenHKP.o `test -f 'paths/FlattenHKP.cc' || echo './'`paths/FlattenHKP.cc >mv -f .deps/FlattenHKP.Tpo .deps/FlattenHKP.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT UnipathBabyStats.o -MD -MP -MF .deps/UnipathBabyStats.Tpo -c -o UnipathBabyStats.o `test -f 'paths/reporting/UnipathBabyStats.cc' || echo './'`paths/reporting/UnipathBabyStats.cc >mv -f .deps/FixSomeIndels.Tpo .deps/FixSomeIndels.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT ConnectScaffolds.o -MD -MP -MF .deps/ConnectScaffolds.Tpo -c -o ConnectScaffolds.o `test -f 'paths/ConnectScaffolds.cc' || echo './'`paths/ConnectScaffolds.cc >mv -f .deps/PathsToLocs.Tpo .deps/PathsToLocs.Po >x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.39-gentoo-r3 -DMAKE_RELEASE=3.0 -DSVN_VERSION=37578 -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -MT PreCorrect.o -MD -MP -MF .deps/PreCorrect.Tpo -c -o PreCorrect.o `test -f 'paths/PreCorrect.cc' || echo './'`paths/PreCorrect.cc >mv -f .deps/UnipathBabyStats.Tpo .deps/UnipathBabyStats.Po >rm -f libAllPathsLG.a >x86_64-pc-linux-gnu-ar cru libAllPathsLG.a Mutmer.o EvalScaffoldsUtils.o EvalUtils.o Floatvector.o UnibaseCopyNumber3Core.o Mempool.o Basevector.o VecOverlap.o HKPMerger.o FindUnipathSeedsLG.o AffineRefiner.o ExtendUnipathSeqs.o ParsedArgs.o Solid.o FeudalFileWriter.o Qualvector.o AddSuperReads.o UnipathNhoodLG.o PseudoUnipatherLib.o ReadLoc.o Digraph.o Equiv.o IndexedAlignmentPlusVector.o CLinkBundle.o PerfectCount.o SupersHandler.o LookAlign.o CSublink.o PatcherCottageCore.o ReadTracker.o ProcBuf.o Quality.o GenomePlacement.o JumpAligner.o LookupTabBuilder.o Alignlets2ReadLocs.o ScaffoldAccuracyCore.o Misc.o PerfStat.o FeudalTools.o RunCommand.o AlignTwoBasevectors.o UnipathSeqBuilder.o RemoveDuplicateAligns.o LongReadTools.o SortKmersB.o SortKmers.o ThreadsafeIO.o Shuffle.o AlignSeqsToHyper.o Assert.o FastaConverter.o NormalRandom.o File.o ContigsManager.o SysConf.o SeqOnHyper.o MakeAlignsStatic.o SymLink.o FastaVerifier.o SaveScaffoldGraph.o FastaFileset.o HyperKmerPath.o PowerOf2.o KmerParcels.o TokenizeString.o KmerParcelsBuilder.o QueryLookupTableCore.o FindGaps.o KmerShape.o BinaryIO.o Arith.o BasevectorTools.o GapSkip.o VecAlignmentPlus.o ReadFillRecord.o OffsetTracker.o NStatsTools.o Exit.o SmithWatFree.o ContigActualloc.o FirstLookupFinderECJ.o SuckScaffolds.o PackAlign.o MuxWalkGraph.o ReadsToPathsCoreX.o SortKmersA.o SortKmersC.o RunTime.o DumbCall.o SeedNeighborhoodAnnex.o IdentifyCircularScaffolds.o ParseSet.o CommonPatherCore.o ImproperMerge.o SeedNeighborhood.o FastaParser.o LinkTimestamp.o NormalDistribution.o MemTracker.o PathEmbedding.o PerfectLookup.o FirstLookupPerfect.o InsertWalker.o FindClosures.o CSuperLinks.o MapAligns.o MemberOf.o MersenneTwister.o System.o FastaNameParser.o SubsumptionList.o InternalMergeImpl.o GordianKnot.o BreakBadScaffolds.o MatchList.o AgpMods.o RunAllPathsCommon.o BinaryStream.o LookupTableBuilder.o Charvector.o SimpleLoop.o KmerPath.o SeqInterval.o HTMLUtils.o Crash.o Overlap.o Generic.o VerifyGapLengths.o FetchReadsAmb.o Random.o ScoreAlignment.o AssemblyCleanupTools.o Placement.o BuildScaffoldGraph.o KmerBaseBroker.o Bernoulli.o Calculator.o PdfEntry.o Permutation.o UnibaseUtils.o OffsetDistributionInterface.o PairedPair.o HugeBVec.o FindCells.o Bases.o FirstLookup.o KmerPathMuxSearcher.o FeudalControlBlock.o AlignCollector.o PairsHandler.o HoInterval.o PostPatcherBridgeGap.o DigraphPaths.o ParseRange.o Vec.o AgpFile.o WorklistMP.o PairsManager.o UnipathSeq.o SmithWatAffine.o HitReceiver.o AlignAndMerge.o PerfectAlignerLG.o FetchReads.o TraceVal.o AnAssemblyClassUtil.o CloseUnipathGapsCore.o ProcessFrequentKmers.o ContigEvent.o MuxSearchPolicy.o FastIfstream.o Superb.o AlignPairsToHyper.o KmerRecord.o LookupTable.o CGraphMass.o IntDistribution.o SquashHyperFastavector.o FragmentFiller.o ScaffoldsUtils.o PseudoUnipathGapCloser.o MakeScaffoldsCloseBest.o QualNibbleVec.o Fastavector.o OffsetDistribution.o ReadLocation.o UseGDB.o Kmer.o UnipathFixerTools.o ImperfectLookup.o MakeScaffoldsScoredBest.o SInsertion.o BaseVec.o ReadLocationUtil.o FixScaffoldsCore.o LockedData.o MapUnibasesToContigs.o Color.o SimpleWalk.o Eps.o MuxSearchAgent.o GetNextKmerPair.o FastaFilestream.o LocsHandlerLG.o ReadFillDatabase.o Ulink.o SmithWatBandedA.o FlowAlignSummary.o PrettyPrintTable.o PrintAlignment.o MakeAlignsMethod.o CompressedSequence.o FirstLookupFinder.o BlockAlign.o RegapSupers.o SuperMap.o Mux.o HashSimple.o AlignConsecutiveContigs.o ReftigUtils.o HyperBasevector.o MaxMutmerFromMer.o FeudalFileReader.o VecInserts.o SequenceEntropy.o Utils.o BitVec.o Oob.o RunAllPathsCommonRules.o Intvector.o Alignment.o KmerPathInterval.o Hit.o CharString.o MiscUtil.o SearchFastb2Core.o UnibaseCopyNumber2Core.o TimeUtils.o FastaFilestreamPreview.o Matrix.o HyperFastavector.o WorklistUtils.o DotUtils.o ReadPather.o InternalMerge.o Unipath.o NegativeGapValidator.o ScaffoldGraphIntegrity.o UnipathNhoodCommon.o AlignFromMutmersAndSW.o Types.o LookupTab.o CLinFastavec.o Sepdev.o EfastaTools.o AnnotatedContig.o BinsVec.o MakeAlignsPathsParallelX.o ReadPairing.o SortKmersD.o COffset.o MuxToPath.o AlignHyperKmerPath.o Functions.o Parallel.o AnAssemblyClass.o Alignlet.o KmerPathDatabase.o MuxGraph.o HyperKmerPathCleaner.o >x86_64-pc-linux-gnu-ranlib libAllPathsLG.a >/bin/sh ../libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-g++ -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp 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libAllPathsLG.a -pthread >/bin/sh ../libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-g++ -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -pthread -Wl,-O1 -Wl,--hash-style=gnu -o FilterPrunedReads FilterPrunedReads.o libAllPathsLG.a >libtool: link: x86_64-pc-linux-gnu-g++ -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -pthread -Wl,-O1 -Wl,--hash-style=gnu -o FilterPrunedReads FilterPrunedReads.o libAllPathsLG.a -pthread >/bin/sh ../libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-g++ -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual 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libAllPathsLG.a -pthread >libtool: link: x86_64-pc-linux-gnu-g++ -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -pthread -Wl,-O1 -Wl,--hash-style=gnu -o MapSeeds MapSeeds.o libAllPathsLG.a -pthread >/bin/sh ../libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-g++ -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -pthread -Wl,-O1 -Wl,--hash-style=gnu -o LocalizeReadsLG LocalizeReadsLG.o libAllPathsLG.a >/bin/sh ../libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-g++ -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels 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DisplayLibraryStats DisplayLibraryStats.o libAllPathsLG.a -pthread >libtool: link: x86_64-pc-linux-gnu-g++ -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -pthread -Wl,-O1 -Wl,--hash-style=gnu -o SelectSeeds SelectSeeds.o libAllPathsLG.a -pthread >libtool: link: x86_64-pc-linux-gnu-g++ -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -pthread -Wl,-O1 -Wl,--hash-style=gnu -o LocalizeReadsLG LocalizeReadsLG.o libAllPathsLG.a -pthread >/bin/sh ../libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-g++ -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -pthread -Wl,-O1 -Wl,--hash-style=gnu -o PickTheRightBranch PickTheRightBranch.o libAllPathsLG.a >libtool: link: x86_64-pc-linux-gnu-g++ -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -pthread -Wl,-O1 -Wl,--hash-style=gnu -o PickTheRightBranch PickTheRightBranch.o libAllPathsLG.a -pthread >/bin/sh ../libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-g++ -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -L/usr/local/lib -Wl,-R/usr/local/lib -pthread -Wl,-O1 -Wl,--hash-style=gnu -o SamplePairedReadStatsOld SamplePairedReadStatsOld.o libAllPathsLG.a -lboost_filesystem-mt >libtool: link: x86_64-pc-linux-gnu-g++ -fopenmp -march=native -O2 -Wextra -Wall -ansi -pedantic -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-unused -Wno-deprecated -Wno-long-long -Wno-parentheses -fno-nonansi-builtins -ftemplate-depth-50 -mieee-fp -fno-strict-aliasing -iquote . -ggdb3 -Wl,-R/usr/local/lib -pthread -Wl,-O1 -Wl,--hash-style=gnu -o SamplePairedReadStatsOld SamplePairedReadStatsOld.o -L/usr/local/lib libAllPathsLG.a -lboost_filesystem-mt -pthread >collect2: ld returned 1 exit status >make[2]: *** [PickTheRightBranch] Errore 1 >make[2]: *** Attesa dei processi non terminati.... >collect2: ld returned 1 exit status >make[2]: *** [SamplePairedReadStatsOld] Errore 1 >collect2: ld returned 1 exit status >make[2]: *** [LocalizeReadsLG] Errore 1 >collect2: ld returned 1 exit status >make[2]: *** [SelectSeeds] Errore 1 >make[2]: Leaving directory `/tmp/portage/sci-biology/allpathslg-37578/work/allpathslg-37578/src' >make[1]: *** [all] Errore 2 >make[1]: Leaving directory `/tmp/portage/sci-biology/allpathslg-37578/work/allpathslg-37578/src' >make: *** [all-recursive] Errore 1 >emake failed > * ERROR: sci-biology/allpathslg-37578 failed (compile phase): > * emake failed > * > * Call stack: > * ebuild.sh, line 56: Called src_compile > * environment, line 3147: Called _eapi2_src_compile > * ebuild.sh, line 669: Called die > * The specific snippet of code: > * emake || die "emake failed" > * > * If you need support, post the output of 'emerge --info =sci-biology/allpathslg-37578', > * the complete build log and the output of 'emerge -pqv =sci-biology/allpathslg-37578'. > * The complete build log is located at '/home/ago/log/build/sci-biology/allpathslg-37578:20110925-005055.log'. > * The ebuild environment file is located at '/tmp/portage/sci-biology/allpathslg-37578/temp/environment'. > * S: '/tmp/portage/sci-biology/allpathslg-37578/work/allpathslg-37578'
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