Go to:
Gentoo Home
Documentation
Forums
Lists
Bugs
Planet
Store
Wiki
Get Gentoo!
Gentoo's Bugzilla – Attachment 287575 Details for
Bug 383659
[science overlay] sci-biology/emboss-6.4 version bump
Home
|
New
–
[Ex]
|
Browse
|
Search
|
Privacy Policy
|
[?]
|
Reports
|
Requests
|
Help
|
New Account
|
Log In
[x]
|
Forgot Password
Login:
[x]
emboss-6.3.1_p4-r1.ebuild with changed URL
emboss-6.3.1_p4-r1.ebuild (text/plain), 2.51 KB, created by
Juergen Rose
on 2011-09-24 04:28:01 UTC
(
hide
)
Description:
emboss-6.3.1_p4-r1.ebuild with changed URL
Filename:
MIME Type:
Creator:
Juergen Rose
Created:
2011-09-24 04:28:01 UTC
Size:
2.51 KB
patch
obsolete
># Copyright 1999-2011 Gentoo Foundation ># Distributed under the terms of the GNU General Public License v2 ># $Header: /var/cvsroot/gentoo-x86/sci-biology/emboss/emboss-6.3.1_p4.ebuild,v 1.2 2011/03/09 16:29:05 jlec Exp $ > >EAPI="4" > >inherit emboss > >EBO_PATCH="4" >EBOV=${PV/_p*} > >DESCRIPTION="The European Molecular Biology Open Software Suite - A sequence analysis package" >SRC_URI=" > ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-${EBOV}.tar.gz > http://dev.gentoo.org/~jlec/distfiles/${PF}.patch.bz2" >##[[ -n ${EBO_PATCH} ]] && SRC_URI+=" ftp://${PN}.open-bio.org/pub/EMBOSS/fixes/patches/patch-1-${EBO_PATCH}.gz -> ${P}-upstream.patch.gz" >[[ -n ${EBO_PATCH} ]] && SRC_URI+=" http://pkgs.fedoraproject.org/lookaside/pkgs/EMBOSS/patch-1-4.gz/7a42594c5eda4adc6457f33e4ab0d8f2/patch-1-${EBO_PATCH}.gz -> ${P}-upstream.patch.gz" > >KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos" >IUSE+=" minimal" > >RDEPEND+=" !sys-devel/cons" >PDEPEND+=" > !minimal? ( > sci-biology/aaindex > sci-biology/cutg > sci-biology/prints > sci-biology/prosite > sci-biology/rebase > sci-biology/transfac > )" > >S="${WORKDIR}"/EMBOSS-${EBOV} > >EBO_EXTRA_ECONF="--includedir=${EPREFIX}/usr/include/emboss" > >DOCS+=" FAQ THANKS" > >src_prepare() { > [[ -n ${EBO_PATCH} ]] && epatch "${WORKDIR}"/${P}-upstream.patch > epatch "${WORKDIR}"/${PF}.patch > emboss_src_prepare >} > >src_install() { > default > > sed -e "s:EPREFIX:${EPREFIX}:g" "${FILESDIR}"/${PN}-README.Gentoo-2 > README.Gentoo && \ > dodoc README.Gentoo > > # Install env file for setting libplplot and acd files path. > cat <<- EOF > 22emboss > # ACD files location > EMBOSS_ACDROOT="${EPREFIX}/usr/share/EMBOSS/acd" > EMBOSS_DATA="${EPREFIX}/usr/share/EMBOSS/data" > EOF > doenvd 22emboss > > # Clashes #330507, resolved upstream > mv "${ED}"/usr/bin/{digest,pepdigest} || die > > # Remove useless dummy files from the image. > find "${ED}"/usr/share/EMBOSS -name dummyfile -delete || die "Failed to remove dummy files." > > # Move the provided codon files to a different directory. This will avoid > # user confusion and file collisions on case-insensitive file systems (see > # bug #115446). This change is documented in "README.Gentoo". > mv "${ED}"/usr/share/EMBOSS/data/CODONS{,.orig} || \ > die "Failed to move CODON directory." > > # Move the provided restriction enzyme prototypes file to a different name. > # This avoids file collisions with versions of rebase that install their > # own enzyme prototypes file (see bug #118832). > mv "${ED}"/usr/share/EMBOSS/data/embossre.equ{,.orig} || \ > die "Failed to move enzyme equivalence file." >}
You cannot view the attachment while viewing its details because your browser does not support IFRAMEs.
View the attachment on a separate page
.
View Attachment As Raw
Actions:
View
Attachments on
bug 383659
:
287021
| 287575