* Package: sci-libs/cholmod-1.7.3 * Repository: gentoo * Maintainer: sci@gentoo.org * USE: amd64 elibc_glibc kernel_linux multilib supernodal userland_GNU * FEATURES: ccache preserve-libs sandbox shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory chdir: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory chdir: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory >>> Unpacking source... >>> Unpacking CHOLMOD-1.7.3.tar.gz to /home/portage/portage/sci-libs/cholmod-1.7.3/work >>> Unpacking cholmod-1.7.0-autotools.patch.bz2 to /home/portage/portage/sci-libs/cholmod-1.7.3/work >>> Source unpacked in /home/portage/portage/sci-libs/cholmod-1.7.3/work shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory chdir: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory >>> Preparing source in /home/portage/portage/sci-libs/cholmod-1.7.3/work/CHOLMOD ... * Applying cholmod-1.7.0-autotools.patch ... [ ok ] * Running eautoreconf in '/home/portage/portage/sci-libs/cholmod-1.7.3/work/CHOLMOD' ... * Running aclocal ... [ ok ] * Running libtoolize --copy --force --install --automake ... [ ok ] * Running aclocal ... [ ok ] * Running autoconf ... [ ok ] * Running automake --add-missing --copy --foreign ... [ ok ] * Running elibtoolize in: CHOLMOD/ * Applying portage-1.2.0.patch ... * Applying sed-1.5.6.patch ... * Applying as-needed-2.2.6.patch ... >>> Source prepared. shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory chdir: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory >>> Configuring source in /home/portage/portage/sci-libs/cholmod-1.7.3/work/CHOLMOD ... Package blas was not found in the pkg-config search path. Perhaps you should add the directory containing `blas.pc' to the PKG_CONFIG_PATH environment variable No package 'blas' found Package blas was not found in the pkg-config search path. Perhaps you should add the directory containing `blas.pc' to the PKG_CONFIG_PATH environment variable Package 'blas', required by 'lapack', not found * econf: updating CHOLMOD/config.sub with /usr/share/gnuconfig/config.sub * econf: updating CHOLMOD/config.guess with /usr/share/gnuconfig/config.guess ./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 --with-blas= --with-lapack= --enable-mod-supernodal --enable-mod-modify --enable-mod-matrixops --disable-mod-partition --disable-static checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... gawk checking whether make sets $(MAKE)... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for style of include used by make... GNU checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3 checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for x86_64-pc-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar checking for archiver @FILE support... @ checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok checking for sysroot... no checking for x86_64-pc-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for sqrt in -lm... yes checking UFconfig.h usability... yes checking UFconfig.h presence... yes checking for UFconfig.h... yes Enabling mod-check: yes Enabling mod-cholesku: yes Enabling mod-partition: no Enabling mod-matrixops: yes Enabling mod-modify: yes Enabling mod-supernoda: yes checking for x86_64-pc-linux-gnu-g77... no checking for x86_64-pc-linux-gnu-xlf... no checking for x86_64-pc-linux-gnu-f77... no checking for x86_64-pc-linux-gnu-frt... no checking for x86_64-pc-linux-gnu-pgf77... no checking for x86_64-pc-linux-gnu-cf77... no checking for x86_64-pc-linux-gnu-fort77... no checking for x86_64-pc-linux-gnu-fl32... no checking for x86_64-pc-linux-gnu-af77... no checking for x86_64-pc-linux-gnu-xlf90... no checking for x86_64-pc-linux-gnu-f90... no checking for x86_64-pc-linux-gnu-pgf90... no checking for x86_64-pc-linux-gnu-pghpf... no checking for x86_64-pc-linux-gnu-epcf90... no checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran checking whether we are using the GNU Fortran 77 compiler... yes checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes checking for x86_64-pc-linux-gnu-g77... (cached) x86_64-pc-linux-gnu-gfortran checking whether we are using the GNU Fortran 77 compiler... (cached) yes checking whether x86_64-pc-linux-gnu-gfortran accepts -g... (cached) yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... (cached) yes checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from x86_64-pc-linux-gnu-gfortran... -v checking for Fortran 77 libraries of x86_64-pc-linux-gnu-gfortran... -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.5 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.5/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.5/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.5/../../.. -lgfortranbegin -lgfortran -lm checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking for sgemm_... no checking for ATL_xerbla in -latlas... no checking for sgemm_ in -lblas... yes checking for dgemm_ in -ldgemm... no checking for sgemm_ in -lmkl... no checking for sgemm_... (cached) no checking for sgemm_ in -lcxml... no checking for sgemm_ in -ldxml... no checking for sgemm_ in -lscs... no checking for sgemm_ in -lcomplib.sgimath... no checking for sgemm_ in -lblas... (cached) yes checking for sgemm_ in -lessl... no checking for sgemm_ in -lblas... (cached) yes checking for cheev_... no checking for cheev_ in -llapack... no checking for cheev_ in -llapack_rs6k... no configure: error: Cannot find lapack libraries !!! Please attach the following file when seeking support: !!! /home/portage/portage/sci-libs/cholmod-1.7.3/work/CHOLMOD/config.log * ERROR: sci-libs/cholmod-1.7.3 failed (configure phase): * econf failed * * Call stack: * ebuild.sh, line 69: Called src_configure * environment, line 2841: Called econf '--with-blas=' '--with-lapack=' '--enable-mod-supernodal' '--enable-mod-modify' '--enable-mod-matrixops' '--disable-mod-partition' '--disable-static' * ebuild.sh, line 610: Called die * The specific snippet of code: * die "econf failed" * * If you need support, post the output of 'emerge --info =sci-libs/cholmod-1.7.3', * the complete build log and the output of 'emerge -pqv =sci-libs/cholmod-1.7.3'. * The complete build log is located at '/home/portage/portage/sci-libs/cholmod-1.7.3/temp/build.log'. * The ebuild environment file is located at '/home/portage/portage/sci-libs/cholmod-1.7.3/temp/environment'. * S: '/home/portage/portage/sci-libs/cholmod-1.7.3/work/CHOLMOD' shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory chdir: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory