USE="sse -ssse2" build.log

build.log (text/plain), 67.58 KB, created by Andreas Schürch on 2011-04-04 17:22:46 UTC

[32;01m * [39;49;00mPackage:    sci-chemistry/gromacs-4.5.4
[32;01m * [39;49;00mRepository: gentoo
[32;01m * [39;49;00mMaintainer: [e-mail]
[32;01m * [39;49;00mUSE:        elibc_glibc kernel_linux sse test userland_GNU x86
[32;01m * [39;49;00mFEATURES:   sandbox test
>>> Unpacking source...
>>> Unpacking gmxtest-4.0.4.tgz to /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work
>>> Unpacking gromacs-4.5.4.tar.gz to /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work
>>> Source unpacked in /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work
>>> Preparing source in /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4 ...
 [32;01m*[0m Running eautoreconf in '/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4' ...
 [32;01m*[0m Running aclocal -I config ...
[A[172C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running true --copy --force --install --automake ...
[A[172C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running aclocal -I config ...
[A[172C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running autoconf ...
[A[172C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running autoheader ...
[A[172C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running automake --add-missing --copy --foreign ...
[A[172C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running elibtoolize in: gromacs-4.5.4/config/
 [32;01m*[0m   Applying install-sh-1.5.4.patch ...
 [32;01m*[0m   Applying portage-1.5.10.patch ...
 [32;01m*[0m   Applying sed-1.5.6.patch ...
 [32;01m*[0m   Applying as-needed-1.5.26.patch ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4 ...
 [33;01m*[0m WARNING: The built-in FFTPACK routines are slow.
 [33;01m*[0m Are you sure you don\'t want to use FFTW?
 [33;01m*[0m It is free and much faster...
 [32;01m*[0m Configuring for float precision
>>> Working in BUILD_DIR: "/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float"
 * econf: updating gromacs-4.5.4/config/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating gromacs-4.5.4/config/config.guess with /usr/share/gnuconfig/config.guess
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/configure --prefix=/usr --build=i686-pc-linux-gnu --host=i686-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --enable-shared --disable-static --bindir=/usr/bin --docdir=/usr/share/doc/gromacs-4.5.4 --enable-float --without-dmalloc --without-fft --without-gsl --without-x --without-xml --disable-threads --disable-ppc-altivec --disable-ia64-asm --without-external-lapack --without-external-blas --disable-fortran --disable-bluegene --disable-la-files --disable-power6 --disable-ia32-sse --disable-x86-64-sse --enable-ia32-sse --disable-mpi --program-suffix= CC=i686-pc-linux-gnu-gcc F77=i686-pc-linux-gnu-gfortran
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking how to create a ustar tar archive... gnutar
checking for i686-pc-linux-gnu-cc... i686-pc-linux-gnu-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether i686-pc-linux-gnu-gcc accepts -g... yes
checking for i686-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of i686-pc-linux-gnu-gcc... none
checking dependency style of i686-pc-linux-gnu-gcc... none
checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking whether ln -s works... yes
checking whether i686-pc-linux-gnu-gcc accepts -O3... yes
checking whether i686-pc-linux-gnu-gcc accepts -msse2... yes
checking whether i686-pc-linux-gnu-gcc accepts -funroll-all-loops... yes
checking whether i686-pc-linux-gnu-gcc accepts -std=gnu99... yes
checking whether i686-pc-linux-gnu-gcc accepts -fexcess-precision=fast... no
******************************************
* Using CFLAGS from environment variable *
******************************************
checking whether byte ordering is bigendian... no
checking that size_t can hold pointers... yes
checking for SIGUSR1... yes
checking for pipes... yes
checking floating-point format... IEEE754 (little-endian byte and word order)
checking whether ln -s works... yes
checking whether make sets $(MAKE)... (cached) yes
checking for a sed that does not truncate output... /bin/sed
checking for ld used by i686-pc-linux-gnu-gcc... /usr/i686-pc-linux-gnu/bin/ld
checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for /usr/i686-pc-linux-gnu/bin/ld option to reload object files... -r
checking for BSD-compatible nm... /usr/bin/nm -B
checking how to recognise dependent libraries... pass_all
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking for i686-pc-linux-gnu-g++... i686-pc-linux-gnu-g++
checking whether we are using the GNU C++ compiler... yes
checking whether i686-pc-linux-gnu-g++ accepts -g... yes
checking dependency style of i686-pc-linux-gnu-g++... none
checking how to run the C++ preprocessor... i686-pc-linux-gnu-g++ -E
checking the maximum length of command line arguments... 32768
checking command to parse /usr/bin/nm -B output from i686-pc-linux-gnu-gcc object... ok
checking for objdir... .libs
checking for i686-pc-linux-gnu-ar... i686-pc-linux-gnu-ar
checking for i686-pc-linux-gnu-ranlib... i686-pc-linux-gnu-ranlib
checking for i686-pc-linux-gnu-strip... i686-pc-linux-gnu-strip
checking if i686-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for i686-pc-linux-gnu-gcc option to produce PIC... -fPIC
checking if i686-pc-linux-gnu-gcc PIC flag -fPIC works... yes
checking if i686-pc-linux-gnu-gcc static flag -static works... yes
checking if i686-pc-linux-gnu-gcc supports -c -o file.o... yes
checking whether the i686-pc-linux-gnu-gcc linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... cat: ld.so.conf.d/*.conf: No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking for shl_load... no
checking for shl_load in -ldld... no
checking for dlopen... no
checking for dlopen in -ldl... yes
checking whether a program can dlopen itself... yes
checking whether a statically linked program can dlopen itself... no
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
configure: creating libtool
appending configuration tag "CXX" to libtool
checking for ld used by i686-pc-linux-gnu-g++... /usr/i686-pc-linux-gnu/bin/ld
checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes
checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking for i686-pc-linux-gnu-g++ option to produce PIC... -fPIC
checking if i686-pc-linux-gnu-g++ PIC flag -fPIC works... yes
checking if i686-pc-linux-gnu-g++ static flag -static works... yes
checking if i686-pc-linux-gnu-g++ supports -c -o file.o... yes
checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... cat: ld.so.conf.d/*.conf: No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
appending configuration tag "F77" to libtool
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for i686-pc-linux-gnu-gfortran option to produce PIC... -fPIC
checking if i686-pc-linux-gnu-gfortran PIC flag -fPIC works... yes
checking if i686-pc-linux-gnu-gfortran static flag -static works... yes
checking if i686-pc-linux-gnu-gfortran supports -c -o file.o... yes
checking whether the i686-pc-linux-gnu-gfortran linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... cat: ld.so.conf.d/*.conf: No such file or directory
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... 64
checking for _LARGEFILE_SOURCE value needed for large files... no
checking for sqrt in -lm... yes
configure: WARNING: The built-in FFTPACK routines are slow.
Are you sure you don't want to use FFTW? It is free and much faster...
checking rpc/rpc.h usability... yes
checking rpc/rpc.h presence... yes
checking for rpc/rpc.h... yes
checking for rpc/xdr.h... yes
checking for xdr_float in -lnsl... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking unistd.h usability... yes
checking unistd.h presence... yes
checking for unistd.h... yes
checking for unistd.h... (cached) yes
checking direct.h usability... no
checking direct.h presence... no
checking for direct.h... no
checking sys/types.h usability... yes
checking sys/types.h presence... yes
checking for sys/types.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking dirent.h usability... yes
checking dirent.h presence... yes
checking for dirent.h... yes
checking regex.h usability... yes
checking regex.h presence... yes
checking for regex.h... yes
checking for working memcmp... yes
checking return type of signal handlers... void
checking for off_t... yes
checking for vprintf... yes
checking for _doprnt... no
checking if malloc debugging is wanted... no
checking for strcasecmp... yes
checking for strdup... yes
checking for gettimeofday... yes
checking for cbrt... yes
checking for isnan... yes
checking for _isnan... no
checking for isfinite... no
checking for _isfinite... no
checking for fsync... yes
checking for fileno... yes
checking for bool... no
checking for library containing posix_memalign... none required
checking for library containing memalign... none required
checking for _aligned_malloc... no
checking size of int... 4
checking size of long int... 4
checking size of long long int... 8
checking size of off_t... 8
checking size of void*... 4
checking for X... disabled
checking for an ANSI C-conforming const... yes
checking for size_t... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for inline... inline
checking for C/C++ restrict keyword... __restrict
checking for uid_t... yes
checking for gid_t... yes
checking for sig_atomic_t... yes
checking whether your compiler can handle assembly files (*.s)... yes
checking whether as fully supports ia32 SSE... yes
checking whether byte ordering is bigendian... (cached) no
checking if the compiler supports gcc inline assembly... yes
checking if the compiler supports MSVC inline assembly... no
checking if dlopen supported... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/gmxlib/Makefile
config.status: creating src/gmxlib/libgmx.pc
config.status: creating src/gmxlib/gmx_blas/Makefile
config.status: creating src/gmxlib/gmx_lapack/Makefile
config.status: creating src/gmxlib/selection/Makefile
config.status: creating src/gmxlib/statistics/Makefile
config.status: creating src/gmxlib/trajana/Makefile
config.status: creating src/gmxlib/thread_mpi/Makefile
config.status: creating src/gmxlib/nonbonded/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_c/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_bluegene/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_power6/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_f77_single/Makefile
config.status: creating src/gmxlib/nonbonded/nb_kernel_f77_double/Makefile
config.status: creating include/Makefile
config.status: creating include/types/Makefile
config.status: creating include/thread_mpi/Makefile
config.status: creating include/thread_mpi/atomic/Makefile
config.status: creating src/mdlib/Makefile
config.status: creating src/mdlib/libmd.pc
config.status: creating src/kernel/Makefile
config.status: creating src/kernel/libgmxpreprocess.pc
config.status: creating src/tools/Makefile
config.status: creating src/tools/libgmxana.pc
config.status: creating src/ngmx/Makefile
config.status: creating src/contrib/Makefile
config.status: creating scripts/Makefile
config.status: creating admin/Makefile
config.status: creating share/Makefile
config.status: creating share/tutor/Makefile
config.status: creating share/tutor/gmxdemo/Makefile
config.status: creating share/tutor/nmr1/Makefile
config.status: creating share/tutor/nmr2/Makefile
config.status: creating share/tutor/water/Makefile
config.status: creating share/tutor/mixed/Makefile
config.status: creating share/tutor/methanol/Makefile
config.status: creating share/tutor/speptide/Makefile
config.status: creating share/template/Makefile
config.status: creating share/top/Makefile
config.status: creating share/top/gmx.ff/Makefile
config.status: creating share/top/gmx2.ff/Makefile
config.status: creating share/top/encadv.ff/Makefile
config.status: creating share/top/encads.ff/Makefile
config.status: creating share/top/oplsaa.ff/Makefile
config.status: creating share/top/gromos43a1.ff/Makefile
config.status: creating share/top/gromos43a2.ff/Makefile
config.status: creating share/top/gromos45a3.ff/Makefile
config.status: creating share/top/gromos53a5.ff/Makefile
config.status: creating share/top/gromos53a6.ff/Makefile
config.status: creating share/top/charmm27.ff/Makefile
config.status: creating share/top/amber94.ff/Makefile
config.status: creating share/top/amber96.ff/Makefile
config.status: creating share/top/amberGS.ff/Makefile
config.status: creating share/top/amber99.ff/Makefile
config.status: creating share/top/amber99sb.ff/Makefile
config.status: creating share/top/amber99sb-ildn.ff/Makefile
config.status: creating share/top/amber03.ff/Makefile
config.status: creating share/html/Makefile
config.status: creating share/html/images/Makefile
config.status: creating share/html/online/Makefile
config.status: creating man/Makefile
config.status: creating man/man1/Makefile
config.status: creating man/man7/Makefile
config.status: creating Doxyfile
config.status: creating src/config.h
config.status: executing depfiles commands
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4 ...
 [32;01m*[0m Compiling for float precision
>>> Working in BUILD_DIR: "/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float"
make -j3 
Making all in include
make[1]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/include'
Making all in .
make[2]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/include'
make[2]: Nothing to be done for `all-am'.
make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/include'
Making all in types
make[2]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/include/types'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/include/types'
Making all in thread_mpi
make[2]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/include/thread_mpi'
Making all in atomic
make[3]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/include/thread_mpi/atomic'
make[3]: Nothing to be done for `all'.
make[3]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/include/thread_mpi/atomic'
make[3]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/include/thread_mpi'
make[3]: Nothing to be done for `all-am'.
make[3]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/include/thread_mpi'
make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/include/thread_mpi'
make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/include'
Making all in src
make[1]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/src'
(CDPATH="${ZSH_VERSION+.}:" && cd /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4 && /bin/sh /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/config/missing --run autoheader)
configure.ac:464: warning: AC_CACHE_VAL(ac_o3, ...): suspicious cache-id, must contain _cv_ to be cached
../../lib/autoconf/general.m4:1998: AC_CACHE_VAL is expanded from...
../../lib/autoconf/general.m4:2019: AC_CACHE_CHECK is expanded from...
acinclude.m4:255: ACX_CHECK_CC_FLAGS is expanded from...
acinclude.m4:407: ACX_COMPILER_MAXOPT is expanded from...
configure.ac:464: the top level
configure.ac:464: warning: AC_CACHE_VAL(ac_faltivec, ...): suspicious cache-id, must contain _cv_ to be cached
configure.ac:464: warning: AC_CACHE_VAL(ac_maltivec, ...): suspicious cache-id, must contain _cv_ to be cached
configure.ac:464: warning: AC_CACHE_VAL(ac_mabialtivec, ...): suspicious cache-id, must contain _cv_ to be cached
configure.ac:464: warning: AC_CACHE_VAL(ac_fno_schedule_insns, ...): suspicious cache-id, must contain _cv_ to be cached
configure.ac:464: warning: AC_CACHE_VAL(ac_m_cpu_7450, ...): suspicious cache-id, must contain _cv_ to be cached
configure.ac:464: warning: AC_CACHE_VAL(ac_m_tune_970, ...): suspicious cache-id, must contain _cv_ to be cached
configure.ac:464: warning: AC_CACHE_VAL(ac_m_cpu_powerpc, ...): suspicious cache-id, must contain _cv_ to be cached
configure.ac:464: warning: AC_CACHE_VAL(ac_msse2, ...): suspicious cache-id, must contain _cv_ to be cached
configure.ac:464: warning: AC_CACHE_VAL(ac_funroll_all_loops, ...): suspicious cache-id, must contain _cv_ to be cached
configure.ac:464: warning: AC_CACHE_VAL(ac_stdgnu99, ...): suspicious cache-id, must contain _cv_ to be cached
configure.ac:464: warning: AC_CACHE_VAL(ac_fexcess_precision_fast, ...): suspicious cache-id, must contain _cv_ to be cached
configure.ac:464: warning: AC_CACHE_VAL(ac_guessed_cflags, ...): suspicious cache-id, must contain _cv_ to be cached
configure.ac:464: warning: AC_CACHE_VAL(ac_guessed_fflags, ...): suspicious cache-id, must contain _cv_ to be cached
acinclude.m4:281: ACX_CHECK_F77_FLAGS is expanded from...
configure.ac:579: warning: AC_CACHE_VAL(acx_float_format, ...): suspicious cache-id, must contain _cv_ to be cached
acinclude.m4:164: ACX_FLOAT_FORMAT is expanded from...
configure.ac:579: the top level
configure.ac:587: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works, ...): suspicious cache-id, must contain _cv_ to be cached
acinclude.m4:1694: AC_LIBTOOL_COMPILER_OPTION is expanded from...
acinclude.m4:5895: AC_LIBTOOL_PROG_COMPILER_PIC is expanded from...
acinclude.m4:3731: _LT_AC_LANG_C_CONFIG is expanded from...
acinclude.m4:3730: AC_LIBTOOL_LANG_C_CONFIG is expanded from...
acinclude.m4:1159: AC_LIBTOOL_SETUP is expanded from...
acinclude.m4:1139: _AC_PROG_LIBTOOL is expanded from...
acinclude.m4:1104: AC_PROG_LIBTOOL is expanded from...
configure.ac:587: the top level
configure.ac:587: warning: AC_CACHE_VAL(lt_prog_compiler_static_works, ...): suspicious cache-id, must contain _cv_ to be cached
acinclude.m4:1739: AC_LIBTOOL_LINKER_OPTION is expanded from...
configure.ac:587: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
acinclude.m4:3812: _LT_AC_LANG_CXX_CONFIG is expanded from...
acinclude.m4:3811: AC_LIBTOOL_LANG_CXX_CONFIG is expanded from...
acinclude.m4:2867: _LT_AC_TAGCONFIG is expanded from...
configure.ac:587: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_CXX, ...): suspicious cache-id, must contain _cv_ to be cached
configure.ac:587: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
acinclude.m4:4979: _LT_AC_LANG_F77_CONFIG is expanded from...
acinclude.m4:4978: AC_LIBTOOL_LANG_F77_CONFIG is expanded from...
configure.ac:587: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_F77, ...): suspicious cache-id, must contain _cv_ to be cached
configure.ac:587: warning: AC_CACHE_VAL(lt_prog_compiler_pic_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
acinclude.m4:5081: _LT_AC_LANG_GCJ_CONFIG is expanded from...
acinclude.m4:5080: AC_LIBTOOL_LANG_GCJ_CONFIG is expanded from...
configure.ac:587: warning: AC_CACHE_VAL(lt_prog_compiler_static_works_GCJ, ...): suspicious cache-id, must contain _cv_ to be cached
rm -f stamp-h1
touch /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/config.h.in
cd .. && /bin/sh ./config.status src/config.h
config.status: creating src/config.h
config.status: src/config.h is unchanged
make  all-recursive
make[2]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/src'
Making all in gmxlib
make[3]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/src/gmxlib'
Making all in nonbonded
make[4]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/src/gmxlib/nonbonded'
Making all in nb_kernel_ia32_sse
make[5]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel010_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel010_ia32_sse.s
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel030_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel030_ia32_sse.s
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel100_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel100_ia32_sse.s
mkdir .libs
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel010_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel010_ia32_sse.o
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel100_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel100_ia32_sse.o
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel030_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel030_ia32_sse.o
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel101_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel101_ia32_sse.s
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel102_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel102_ia32_sse.s
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel103_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel103_ia32_sse.s
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel101_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel101_ia32_sse.o
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel103_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel103_ia32_sse.o
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel102_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel102_ia32_sse.o
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel104_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel104_ia32_sse.s
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel110_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel110_ia32_sse.s
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel111_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel111_ia32_sse.s
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel111_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel111_ia32_sse.o
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel104_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel104_ia32_sse.o
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel112_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel112_ia32_sse.s
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel113_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel113_ia32_sse.s
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel110_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel110_ia32_sse.o
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel114_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel114_ia32_sse.s
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel112_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel112_ia32_sse.o
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel130_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel130_ia32_sse.s
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel113_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel113_ia32_sse.o
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel131_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel131_ia32_sse.s
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel114_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel114_ia32_sse.o
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel132_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel132_ia32_sse.s
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel130_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel130_ia32_sse.o
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel133_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel133_ia32_sse.s
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel131_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel131_ia32_sse.o
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel132_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel132_ia32_sse.o
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel134_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel134_ia32_sse.s
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel200_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel200_ia32_sse.s
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel133_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel133_ia32_sse.o
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel201_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel201_ia32_sse.s
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel134_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel134_ia32_sse.o
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel202_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel202_ia32_sse.s
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel200_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel200_ia32_sse.o
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel201_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel201_ia32_sse.o
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel203_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel203_ia32_sse.s
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel204_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel204_ia32_sse.s
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel202_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel202_ia32_sse.o
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel203_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel203_ia32_sse.o
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel204_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel204_ia32_sse.o
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel210_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel210_ia32_sse.s
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel211_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel211_ia32_sse.s
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel210_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel210_ia32_sse.o
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel211_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel211_ia32_sse.o
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel212_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel212_ia32_sse.s
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel213_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel213_ia32_sse.s
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel212_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel212_ia32_sse.o
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel213_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel213_ia32_sse.o
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel214_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel214_ia32_sse.s
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel230_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel230_ia32_sse.s
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel214_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel214_ia32_sse.o
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel230_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel230_ia32_sse.o
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel231_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel231_ia32_sse.s
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel232_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel232_ia32_sse.s
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel232_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel232_ia32_sse.o
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel231_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel231_ia32_sse.o
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel233_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel233_ia32_sse.s
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel234_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel234_ia32_sse.s
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel233_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel233_ia32_sse.o
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel234_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel234_ia32_sse.o
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel300_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel300_ia32_sse.s
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel301_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel301_ia32_sse.s
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel300_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel300_ia32_sse.o
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel301_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel301_ia32_sse.o
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel302_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel302_ia32_sse.s
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel303_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel303_ia32_sse.s
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel302_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel302_ia32_sse.o
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel303_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel303_ia32_sse.o
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel304_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel304_ia32_sse.s
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel310_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel310_ia32_sse.s
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel304_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel304_ia32_sse.o
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel311_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel311_ia32_sse.s
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel310_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel310_ia32_sse.o
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel312_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel312_ia32_sse.s
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel311_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel311_ia32_sse.o
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel313_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel313_ia32_sse.s
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel312_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel312_ia32_sse.o
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel314_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel314_ia32_sse.s
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel313_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel313_ia32_sse.o
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel330_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel330_ia32_sse.s
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel314_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel314_ia32_sse.o
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel331_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel331_ia32_sse.s
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel330_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel330_ia32_sse.o
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel332_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel332_ia32_sse.s
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel331_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel331_ia32_sse.o
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel333_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel333_ia32_sse.s
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel332_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel332_ia32_sse.o
/bin/sh ../../../../libtool   --mode=compile i686-pc-linux-gnu-gcc  -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel334_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel334_ia32_sse.s
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel333_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel333_ia32_sse.o
/bin/sh ../../../../libtool --tag=CC   --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse -I../../../../src  -I/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include -DGMXLIBDIR=\"/usr/share/top\"   -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel400_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c
 i686-pc-linux-gnu-gcc -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel334_ia32_sse.s  -fPIC -DPIC -o .libs/nb_kernel334_ia32_sse.o
/bin/sh ../../../../libtool --tag=CC   --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse -I../../../../src  -I/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include -DGMXLIBDIR=\"/usr/share/top\"   -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c -o nb_kernel410_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.c
 i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include -DGMXLIBDIR=\"/usr/share/top\" -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c  -fPIC -DPIC -o .libs/nb_kernel400_ia32_sse.o
In file included from /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:22:
/usr/lib/gcc/i686-pc-linux-gnu/4.4.5/include/emmintrin.h:32:3: error: #error "SSE2 instruction set not enabled"
In file included from /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:24:
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:128: error: expected declaration specifiers or '...' before '__m128i'
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h: In function 'printxmmi':
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:132: error: '__m128i' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:132: error: (Each undeclared identifier is reported only once
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:132: error: for each function it appears in.)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:132: error: expected expression before ')' token
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h: In function 'gmx_mm_log_ps':
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:215: error: can't convert between vector values of different size
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:216: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'expbase_m1'
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:216: error: 'expbase_m1' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:234: error: '__m128i' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:234: error: expected ';' before 'iexp'
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:242: error: 'iexp' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h: In function 'gmx_mm_exp_ps':
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:329: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'expbase'
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:329: error: 'expbase' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:339: error: '__m128i' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:339: error: expected ';' before 'iexppart'
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:346: error: 'iexppart' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h: In function 'gmx_mm_sincos_ps':
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:391: error: expected '=', ',', ';', 'asm' or '__attribute__' before '_sincosf_izero'
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:391: error: '_sincosf_izero' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:392: error: expected '=', ',', ';', 'asm' or '__attribute__' before '_sincosf_ione'
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:392: error: '_sincosf_ione' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:393: error: expected '=', ',', ';', 'asm' or '__attribute__' before '_sincosf_itwo'
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:393: error: '_sincosf_itwo' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:394: error: expected '=', ',', ';', 'asm' or '__attribute__' before '_sincosf_ithree'
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:394: error: '_sincosf_ithree' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:405: error: can't convert between vector values of different size
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:406: error: can't convert between vector values of different size
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:420: error: '__m128i' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:420: error: expected ';' before '_sincosf_q'
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:421: error: expected ';' before '_sincosf_offsetSin'
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:422: error: expected ';' before '_sincosf_offsetCos'
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:436: error: '_sincosf_q' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:439: error: '_sincosf_offsetSin' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:440: error: '_sincosf_offsetCos' undeclared (first use in this function)
In file included from /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:24:
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h: In function 'gmx_mm_asin_ps':
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:506: error: can't convert between vector values of different size
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h: In function 'gmx_mm_acos_ps':
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:574: error: can't convert between vector values of different size
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h: In function 'gmx_mm_atan_ps':
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:611: error: can't convert between vector values of different size
 i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include -DGMXLIBDIR=\"/usr/share/top\" -O2 -march=i686 -fomit-frame-pointer -pipe -msse -c /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.c  -fPIC -DPIC -o .libs/nb_kernel410_ia32_sse.o
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c: In function 'nb_kernel400_ia32_sse':
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:93: error: can't convert between vector values of different size
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:94: error: can't convert between vector values of different size
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:95: error: can't convert between vector values of different size
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:97: error: '__m128i' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:97: error: expected ';' before 'n0'
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:98: error: expected ';' before 'n0B'
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:217: error: 'n0' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:218: error: 'n0B' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:221: error: 'nnn' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.c:222: error: 'nnnB' undeclared (first use in this function)
make[5]: *** [nb_kernel400_ia32_sse.lo] Error 1
make[5]: *** Waiting for unfinished jobs....
In file included from /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.c:22:
/usr/lib/gcc/i686-pc-linux-gnu/4.4.5/include/emmintrin.h:32:3: error: #error "SSE2 instruction set not enabled"
In file included from /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.c:24:
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:128: error: expected declaration specifiers or '...' before '__m128i'
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h: In function 'printxmmi':
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:132: error: '__m128i' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:132: error: (Each undeclared identifier is reported only once
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:132: error: for each function it appears in.)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:132: error: expected expression before ')' token
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h: In function 'gmx_mm_log_ps':
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:215: error: can't convert between vector values of different size
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:216: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'expbase_m1'
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:216: error: 'expbase_m1' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:234: error: '__m128i' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:234: error: expected ';' before 'iexp'
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:242: error: 'iexp' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h: In function 'gmx_mm_exp_ps':
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:329: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'expbase'
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:329: error: 'expbase' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:339: error: '__m128i' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:339: error: expected ';' before 'iexppart'
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:346: error: 'iexppart' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h: In function 'gmx_mm_sincos_ps':
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:391: error: expected '=', ',', ';', 'asm' or '__attribute__' before '_sincosf_izero'
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:391: error: '_sincosf_izero' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:392: error: expected '=', ',', ';', 'asm' or '__attribute__' before '_sincosf_ione'
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:392: error: '_sincosf_ione' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:393: error: expected '=', ',', ';', 'asm' or '__attribute__' before '_sincosf_itwo'
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:393: error: '_sincosf_itwo' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:394: error: expected '=', ',', ';', 'asm' or '__attribute__' before '_sincosf_ithree'
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:394: error: '_sincosf_ithree' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:405: error: can't convert between vector values of different size
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:406: error: can't convert between vector values of different size
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:420: error: '__m128i' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:420: error: expected ';' before '_sincosf_q'
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:421: error: expected ';' before '_sincosf_offsetSin'
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:422: error: expected ';' before '_sincosf_offsetCos'
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:436: error: '_sincosf_q' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:439: error: '_sincosf_offsetSin' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:440: error: '_sincosf_offsetCos' undeclared (first use in this function)
In file included from /var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.c:24:
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h: In function 'gmx_mm_asin_ps':
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:506: error: can't convert between vector values of different size
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h: In function 'gmx_mm_acos_ps':
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:574: error: can't convert between vector values of different size
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h: In function 'gmx_mm_atan_ps':
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/include/gmx_sse2_single.h:611: error: can't convert between vector values of different size
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.c: In function 'nb_kernel410_ia32_sse':
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.c:97: error: can't convert between vector values of different size
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.c:98: error: can't convert between vector values of different size
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.c:99: error: can't convert between vector values of different size
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.c:101: error: '__m128i' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.c:101: error: expected ';' before 'n0'
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.c:102: error: expected ';' before 'n0B'
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.c:245: error: 'n0' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.c:246: error: 'n0B' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.c:249: error: 'nnn' undeclared (first use in this function)
/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.c:250: error: 'nnnB' undeclared (first use in this function)
make[5]: *** [nb_kernel410_ia32_sse.lo] Error 1
make[5]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/src/gmxlib/nonbonded/nb_kernel_ia32_sse'
make[4]: *** [all-recursive] Error 1
make[4]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/src/gmxlib/nonbonded'
make[3]: *** [all-recursive] Error 1
make[3]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/src/gmxlib'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/src'
make[1]: *** [all] Error 2
make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4_float/src'
make: *** [all-recursive] Error 1
 [31;01m*[0m ERROR: sci-chemistry/gromacs-4.5.4 failed (compile phase):
 [31;01m*[0m   emake failed
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the output of 'emerge --info =sci-chemistry/gromacs-4.5.4',
 [31;01m*[0m the complete build log and the output of 'emerge -pqv =sci-chemistry/gromacs-4.5.4'.
 [31;01m*[0m The complete build log is located at '/var/tmp/portage/sci-chemistry/gromacs-4.5.4/temp/build.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/gromacs-4.5.4/temp/environment'.
 [31;01m*[0m S: '/var/tmp/portage/sci-chemistry/gromacs-4.5.4/work/gromacs-4.5.4'