build.log_1.42__vs__1.42_current_ebuild_with-boost-usr-include-boost.txt

build.log_1.42__vs__1.42_current_ebuild_with-boost-usr-include-boost.txt (text/plain), 27.82 KB, created by Martin Mokrejš on 2011-02-25 11:22:20 UTC

--- rmblast-1.2__boost-1.42/temp/build.log	2011-02-25 11:13:56.000000000 +0100
+++ rmblast-1.2__boost-1.42-with-boost-usr-include-boost/temp/build.log	2011-02-25 12:09:00.000000000 +0100
@@ -306,10 +306,10 @@
 configure: WARNING: Untested Boost version; may prove incompatible.
 configure: WARNING: If so, please re-run this script with the flag --without-boost.
 checking for Boost library name tag... -gcc44-d (autodetected)
-checking for Boost.Regex in /usr/include/boost-1_35/boost... no
-checking for Boost.Spirit in /usr/include/boost-1_35/boost... yes
-checking for Boost.Test in /usr/include/boost-1_35/boost... included-only
-checking for Boost.Threads in /usr/include/boost-1_35/boost... no
+checking for Boost.Regex in /usr/include/boost-1_42/boost... no
+checking for Boost.Spirit in /usr/include/boost-1_42/boost... yes
+checking for Boost.Test in /usr/include/boost-1_42/boost... included-only
+checking for Boost.Threads in /usr/include/boost-1_42/boost... no
 checking for the NCBI C toolkit in /etc/ncbi/c++.by-date/production/20100129/C_TOOLKIT... no
 checking for X... libraries /usr/lib64, headers 
 checking for gethostbyname... yes
@@ -579,32 +579,32 @@
 mkdir -p `dirname /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/ctools/Makefile.in`
 make[2]: [/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/misc/Makefile.in] Error 1 (ignored)
 mkdir -p `dirname /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/misc/Makefile.in`
-test -f /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/db/Makefile.in  ||  cp -p /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/build-system/Makefile.in.skel /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/db/Makefile.in
 make[2]: [/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/gui/Makefile.in] Error 1 (ignored)
-test -f /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/ctools/Makefile.in  ||  cp -p /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/build-system/Makefile.in.skel /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/ctools/Makefile.in
 make[2]: [/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/sample/Makefile.in] Error 1 (ignored)
 test -f /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/misc/Makefile.in  ||  cp -p /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/build-system/Makefile.in.skel /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/misc/Makefile.in
+test -f /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/db/Makefile.in  ||  cp -p /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/build-system/Makefile.in.skel /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/db/Makefile.in
 make[2]: [/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/gui/Makefile.in] Error 1 (ignored)
 mkdir -p `dirname /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/gui/Makefile.in`
+test -f /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/ctools/Makefile.in  ||  cp -p /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/build-system/Makefile.in.skel /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/ctools/Makefile.in
 make[2]: [/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/sample/Makefile.in] Error 1 (ignored)
 mkdir -p `dirname /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/sample/Makefile.in`
 /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/scripts/common/impl/update_configurable.sh /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64 db/Makefile
 make[2]: [/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/internal/Makefile.in] Error 1 (ignored)
-/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/scripts/common/impl/update_configurable.sh /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64 ctools/Makefile
 test -f /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/gui/Makefile.in  ||  cp -p /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/build-system/Makefile.in.skel /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/gui/Makefile.in
+/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/scripts/common/impl/update_configurable.sh /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64 misc/Makefile
 test -f /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/sample/Makefile.in  ||  cp -p /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/build-system/Makefile.in.skel /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/sample/Makefile.in
 make[2]: [/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/internal/Makefile.in] Error 1 (ignored)
 mkdir -p `dirname /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/internal/Makefile.in`
-/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/scripts/common/impl/update_configurable.sh /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64 misc/Makefile
-/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/scripts/common/impl/update_configurable.sh /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64 sample/Makefile
-test -f /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/internal/Makefile.in  ||  cp -p /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/build-system/Makefile.in.skel /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/internal/Makefile.in
+/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/scripts/common/impl/update_configurable.sh /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64 ctools/Makefile
 /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/scripts/common/impl/update_configurable.sh /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64 gui/Makefile
+test -f /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/internal/Makefile.in  ||  cp -p /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/build-system/Makefile.in.skel /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/internal/Makefile.in
+/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/scripts/common/impl/update_configurable.sh /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64 sample/Makefile
 config.status: creating /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/db/Makefile
-config.status: creating /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/sample/Makefile
 config.status: creating /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/misc/Makefile
+config.status: creating /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/sample/Makefile
+config.status: creating /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/gui/Makefile
 config.status: creating /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/ctools/Makefile
 /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/scripts/common/impl/update_configurable.sh /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64 internal/Makefile
-config.status: creating /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/gui/Makefile
 config.status: creating /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/internal/Makefile
 make[3]: Entering directory `/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build'
 make[3]: Leaving directory `/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build'
@@ -676,10 +676,10 @@
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o 
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o 
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o 
-/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbi_process.cpp: In static member function 'static bool ncbi::CProcess::Daemonize(const char*, unsigned int)':
-/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbi_process.cpp:357: warning: ignoring return value of 'int chdir(const char*)', declared with attribute warn_unused_result
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o 
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o 
+/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbi_process.cpp: In static member function 'static bool ncbi::CProcess::Daemonize(const char*, unsigned int)':
+/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbi_process.cpp:357: warning: ignoring return value of 'int chdir(const char*)', declared with attribute warn_unused_result
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o 
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbiatomic.cpp -o ncbiatomic.o 
 /usr/bin/x86_64-pc-linux-gnu-gcc  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  ncbicfg.c -o ncbicfg.o 
@@ -714,9 +714,9 @@
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbifile.cpp -o ncbifile.o 
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o 
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o 
+/usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o 
 /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbimtx.cpp: In member function 'ncbi::TRWLockHolderRef ncbi::CYieldingRWLock::AcquireLock(ncbi::ERWLockType)':
 /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbimtx.cpp:1460: warning: suggest parentheses around '&&' within '||'
-/usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o 
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbireg.cpp -o ncbireg.o 
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbistr.cpp -o ncbistr.o 
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbistre.cpp -o ncbistre.o 
@@ -724,10 +724,10 @@
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbitime.cpp -o ncbitime.o 
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/obj_store.cpp -o obj_store.o 
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/plugin_manager.cpp -o plugin_manager.o 
-/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbitime.cpp: In member function 'bool ncbi::CTime::IsLeap() const':
-/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbitime.cpp:1774: warning: suggest parentheses around '&&' within '||'
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/plugin_manager_store.cpp -o plugin_manager_store.o 
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/rwstreambuf.cpp -o rwstreambuf.o 
+/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbitime.cpp: In member function 'bool ncbi::CTime::IsLeap() const':
+/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbitime.cpp:1774: warning: suggest parentheses around '&&' within '||'
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/stream_utils.cpp -o stream_utils.o 
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/syslog.cpp -o syslog.o 
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/version.cpp -o version.o 
@@ -765,7 +765,7 @@
 Updating dependency information for /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/test_boost.cpp.
 make[6]: Leaving directory `/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/corelib'
 make[6]: Entering directory `/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/corelib'
-/usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  -I/usr/include/boost-1_35/boost/include -DBOOST_DISABLE_THREADS /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/test_boost.cpp -o test_boost.o 
+/usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  -I/usr/include/boost-1_42/boost/include -DBOOST_DISABLE_THREADS /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/test_boost.cpp -o test_boost.o 
 /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/test_boost.cpp: In member function 'virtual void ncbi::CNcbiTestsObserver::test_unit_finish(const boost::unit_test::test_unit&, long unsigned int)':
 /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/test_boost.cpp:1434: error: no matching function for call to 'boost::execution_exception::execution_exception(boost::execution_exception::error_code, const char [17])'
 /usr/include/boost/test/impl/execution_monitor.ipp:1346: note: candidates are: boost::execution_exception::execution_exception(boost::execution_exception::error_code, boost::unit_test::const_string, const boost::execution_exception::location&)