build.log_1.41__vs__1.42_current_ebuild.txt

build.log_1.41__vs__1.42_current_ebuild.txt (text/plain), 30.93 KB, created by Martin Mokrejš on 2011-02-25 11:22:04 UTC

--- rmblast-1.2__boost-1.41/temp/build.log	2011-02-25 11:08:08.000000000 +0100
+++ rmblast-1.2__boost-1.42/temp/build.log	2011-02-25 11:13:56.000000000 +0100
@@ -302,7 +302,7 @@
 checking for python2.5... /usr/bin/python2.5
 checking for usable Python 2.5 libraries... yes
 checking for CPPUNIT in /etc/ncbi/cppunit... no
-checking Boost version... 1_41
+checking Boost version... 1_42
 configure: WARNING: Untested Boost version; may prove incompatible.
 configure: WARNING: If so, please re-run this script with the flag --without-boost.
 checking for Boost library name tag... -gcc44-d (autodetected)
@@ -581,30 +581,30 @@
 mkdir -p `dirname /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/misc/Makefile.in`
 test -f /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/db/Makefile.in  ||  cp -p /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/build-system/Makefile.in.skel /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/db/Makefile.in
 make[2]: [/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/gui/Makefile.in] Error 1 (ignored)
-test -f /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/misc/Makefile.in  ||  cp -p /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/build-system/Makefile.in.skel /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/misc/Makefile.in
 test -f /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/ctools/Makefile.in  ||  cp -p /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/build-system/Makefile.in.skel /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/ctools/Makefile.in
 make[2]: [/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/sample/Makefile.in] Error 1 (ignored)
+test -f /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/misc/Makefile.in  ||  cp -p /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/build-system/Makefile.in.skel /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/misc/Makefile.in
 make[2]: [/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/gui/Makefile.in] Error 1 (ignored)
 mkdir -p `dirname /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/gui/Makefile.in`
-/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/scripts/common/impl/update_configurable.sh /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64 db/Makefile
 make[2]: [/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/sample/Makefile.in] Error 1 (ignored)
 mkdir -p `dirname /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/sample/Makefile.in`
+/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/scripts/common/impl/update_configurable.sh /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64 db/Makefile
 make[2]: [/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/internal/Makefile.in] Error 1 (ignored)
-/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/scripts/common/impl/update_configurable.sh /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64 misc/Makefile
+/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/scripts/common/impl/update_configurable.sh /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64 ctools/Makefile
 test -f /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/gui/Makefile.in  ||  cp -p /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/build-system/Makefile.in.skel /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/gui/Makefile.in
+test -f /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/sample/Makefile.in  ||  cp -p /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/build-system/Makefile.in.skel /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/sample/Makefile.in
 make[2]: [/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/internal/Makefile.in] Error 1 (ignored)
 mkdir -p `dirname /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/internal/Makefile.in`
-test -f /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/sample/Makefile.in  ||  cp -p /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/build-system/Makefile.in.skel /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/sample/Makefile.in
-/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/scripts/common/impl/update_configurable.sh /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64 ctools/Makefile
+/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/scripts/common/impl/update_configurable.sh /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64 misc/Makefile
+/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/scripts/common/impl/update_configurable.sh /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64 sample/Makefile
 test -f /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/internal/Makefile.in  ||  cp -p /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/build-system/Makefile.in.skel /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/internal/Makefile.in
 /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/scripts/common/impl/update_configurable.sh /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64 gui/Makefile
-/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/scripts/common/impl/update_configurable.sh /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64 sample/Makefile
-config.status: creating /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/sample/Makefile
-config.status: creating /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/gui/Makefile
 config.status: creating /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/db/Makefile
-config.status: creating /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/ctools/Makefile
+config.status: creating /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/sample/Makefile
 config.status: creating /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/misc/Makefile
+config.status: creating /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/ctools/Makefile
 /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/scripts/common/impl/update_configurable.sh /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64 internal/Makefile
+config.status: creating /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/gui/Makefile
 config.status: creating /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/internal/Makefile
 make[3]: Entering directory `/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build'
 make[3]: Leaving directory `/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build'
@@ -675,9 +675,9 @@
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o 
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbi_safe_static.cpp -o ncbi_safe_static.o 
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbi_signal.cpp -o ncbi_signal.o 
+/usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o 
 /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbi_process.cpp: In static member function 'static bool ncbi::CProcess::Daemonize(const char*, unsigned int)':
 /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbi_process.cpp:357: warning: ignoring return value of 'int chdir(const char*)', declared with attribute warn_unused_result
-/usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbi_stack.cpp -o ncbi_stack.o 
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbi_system.cpp -o ncbi_system.o 
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbiapp.cpp -o ncbiapp.o 
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbiargs.cpp -o ncbiargs.o 
@@ -714,18 +714,18 @@
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbifile.cpp -o ncbifile.o 
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbimempool.cpp -o ncbimempool.o 
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbimtx.cpp -o ncbimtx.o 
-/usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o 
-/usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbireg.cpp -o ncbireg.o 
 /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbimtx.cpp: In member function 'ncbi::TRWLockHolderRef ncbi::CYieldingRWLock::AcquireLock(ncbi::ERWLockType)':
 /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbimtx.cpp:1460: warning: suggest parentheses around '&&' within '||'
+/usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbiobj.cpp -o ncbiobj.o 
+/usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbireg.cpp -o ncbireg.o 
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbistr.cpp -o ncbistr.o 
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbistre.cpp -o ncbistre.o 
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbithr.cpp -o ncbithr.o 
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbitime.cpp -o ncbitime.o 
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/obj_store.cpp -o obj_store.o 
+/usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/plugin_manager.cpp -o plugin_manager.o 
 /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbitime.cpp: In member function 'bool ncbi::CTime::IsLeap() const':
 /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/ncbitime.cpp:1774: warning: suggest parentheses around '&&' within '||'
-/usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/plugin_manager.cpp -o plugin_manager.o 
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/plugin_manager_store.cpp -o plugin_manager_store.o 
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/rwstreambuf.cpp -o rwstreambuf.o 
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/stream_utils.cpp -o stream_utils.o 
@@ -766,97112 +766,45 @@
 make[6]: Leaving directory `/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/corelib'
 make[6]: Entering directory `/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/corelib'
 /usr/bin/x86_64-pc-linux-gnu-g++  -c -Wall -Wno-format-y2k  -pthread -O2 -pipe -march=nocona -fPIC   -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64  -D_MT -D_REENTRANT -D_THREAD_SAFE -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/inc -I/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/include  -I/usr/include/boost-1_35/boost/include -DBOOST_DISABLE_THREADS /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/test_boost.cpp -o test_boost.o 
-rm -f libtest_boost.so .libtest_boost.so.stamp
-/usr/bin/x86_64-pc-linux-gnu-g++   -shared -o libtest_boost.so -Wl,-rpath,/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.4  -pthread -Wl,-O1 -O  test_boost.o  -Wl,-rpath,/scratch/var/tmp/portage/sci-biology/rmblast-1.2/image//opt/rmblast/lib -Wl,-rpath-link,/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/lib -L/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/lib  -lm  -lpthread 
-/bin/sh /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/scripts/common/impl/if_diff.sh ln -f libtest_boost.so /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/lib
-ln -f libtest_boost.so /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/lib/libtest_boost.so
-ln -f .test_boost.dep /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/status/.test_boost.dep
+/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/test_boost.cpp: In member function 'virtual void ncbi::CNcbiTestsObserver::test_unit_finish(const boost::unit_test::test_unit&, long unsigned int)':
+/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib/test_boost.cpp:1434: error: no matching function for call to 'boost::execution_exception::execution_exception(boost::execution_exception::error_code, const char [17])'
+/usr/include/boost/test/impl/execution_monitor.ipp:1346: note: candidates are: boost::execution_exception::execution_exception(boost::execution_exception::error_code, boost::unit_test::const_string, const boost::execution_exception::location&)
+/usr/include/boost/test/execution_monitor.hpp:85: note:                 boost::execution_exception::execution_exception(const boost::execution_exception&)
+make[6]: *** [test_boost.o] Error 1
+make[6]: Leaving directory `/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/corelib'
+make[6]: Entering directory `/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/corelib'
+rm -f libtest_boost.so .test_boost.dep .libtest_boost.so.stamp
+if [ '/bin/sh /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/scripts/common/impl/if_diff.sh "ln -f"' != '@:' -a -d /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/status -a -w /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/status -a /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/src/corelib != . ]; then \
+    rm -f /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/lib/libtest_boost.so /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/lib/libtest_boost.so \
+       /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/status/.test_boost.dep /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/status/.test_boost.dep; \
+    [ '@# ' = '@# ' ]  ||  \
+     rm -f /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/lib/libtest_boost.so /scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/lib/libtest_boost.so; \
+fi
 make[6]: Leaving directory `/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/corelib'
+make[5]: *** [all.nonusr] Error 2
 make[5]: Leaving directory `/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/corelib'
-make[5]: Entering directory `/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/corelib/test'
-make[6]: Entering directory `/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/corelib/test'
-make[7]: Entering directory `/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/corelib/test'
-make[7]: Leaving directory `/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/corelib/test'
-make[6]: Leaving directory `/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/corelib/test'
-make[5]: Leaving directory `/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/corelib/test'
+make[4]: *** [all.real] Error 2
 make[4]: Leaving directory `/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/corelib'
+make[3]: *** [all_r.needs-reqs] Error 2
 make[3]: Leaving directory `/scratch/var/tmp/portage/sci-biology/rmblast-1.2/work/rmblast-1.2-ncbi-blast-2.2.23+-src/c++/GCC444-ReleaseMTDLL64/build/corelib'