* Package: sci-libs/blas-atlas-3.8.0  * Repository: gentoo  * Maintainer: sci@gentoo.org  * USE: amd64 elibc_glibc kernel_linux multilib test userland_GNU * Please make sure to disable CPU throttling completely * during the compile of blas-atlas. Otherwise, all atlas * generated timings will be completely random and the * performance of the resulting libraries will be degraded * considerably. * For users of <=gcc-4.1.1 only: * If you experience failing SANITY tests during * atlas' compile please try passing -mfpmath=387; this * option might also result in much better performance * than using then sse instruction set depending on your * CPU. >>> Unpacking source... >>> Unpacking atlas3.8.0.tar.bz2 to /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work >>> Unpacking atlas-3.7.39-shared-libs.patch.bz2 to /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work * Applying atlas-3.7.39-shared-libs.patch.bz2 ...  [ ok ] * Applying atlas-asm-gentoo.patch ...  [ ok ] * Applying atlas-3.7.39-decl-fix.patch ...  [ ok ] x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/include -O2 -pipe -march=core2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=3072 -mtune=generic -c /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/atlconf_misc.c /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/atlconf_misc.c: In function ‘GetInt’: /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/atlconf_misc.c:55: warning: format ‘%d’ expects type ‘int’, but argument 5 has type ‘long int’ /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/atlconf_misc.c: In function ‘GetIntRange’: /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/atlconf_misc.c:72: warning: format ‘%d’ expects type ‘int’, but argument 3 has type ‘long int’ /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/atlconf_misc.c:72: warning: format ‘%d’ expects type ‘int’, but argument 4 has type ‘long int’ /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/atlconf_misc.c:78: warning: format ‘%d’ expects type ‘int’, but argument 3 has type ‘long int’ /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/atlconf_misc.c:78: warning: format ‘%d’ expects type ‘int’, but argument 4 has type ‘long int’ /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/atlconf_misc.c: In function ‘GetIntVer’: /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/atlconf_misc.c:93: warning: format ‘%d’ expects type ‘int’, but argument 4 has type ‘long int’ /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/atlconf_misc.c: In function ‘ATL_mprintf’: /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/atlconf_misc.c:200: warning: format not a string literal and no format arguments /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/atlconf_misc.c: In function ‘GetFirstLong’: /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/atlconf_misc.c:230: warning: format ‘%ld’ expects type ‘long int *’, but argument 3 has type ‘long long int *’ /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/atlconf_misc.c: In function ‘GetEnter’: /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/atlconf_misc.c:371: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/include -O2 -pipe -march=core2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=3072 -mtune=generic -o xconfig /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/config.c atlconf_misc.o /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/config.c: In function ‘ProbeF77LIB’: /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/config.c:287: warning: assignment makes pointer from integer without a cast /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/config.c: In function ‘main’: /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/config.c:932: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result atlconf_misc.o: In function `CmndResults': atlconf_misc.c:(.text+0xbfa): warning: the use of `tmpnam' is dangerous, better use `mkstemp' ./xconfig -d s /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/../ -d b /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build -C ac x86_64-pc-linux-gnu-gcc -F ac '-O2 -pipe -march=core2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=3072 -mtune=generic' -C if x86_64-pc-linux-gnu-gfortran -F if -O2 -Ss pmake '$(MAKE) -j1' -Si cputhrchk 0 -b 64 atlconf_misc.o: In function `CmndResults': atlconf_misc.c:(.text+0xbfa): warning: the use of `tmpnam' is dangerous, better use `mkstemp' OS configured as Linux (1) atlconf_misc.o: In function `CmndResults': atlconf_misc.c:(.text+0xbfa): warning: the use of `tmpnam' is dangerous, better use `mkstemp' Assembly configured as GAS_x8664 (2) atlconf_misc.o: In function `CmndResults': atlconf_misc.c:(.text+0xbfa): warning: the use of `tmpnam' is dangerous, better use `mkstemp' Vector ISA Extension configured as SSE3 (2,28) atlconf_misc.o: In function `CmndResults': atlconf_misc.c:(.text+0xbfa): warning: the use of `tmpnam' is dangerous, better use `mkstemp' Architecture configured as PIII (10) /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/atlconf_misc.c: In function ‘GetInt’: /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/atlconf_misc.c:55: warning: format ‘%d’ expects type ‘int’, but argument 5 has type ‘long int’ /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/atlconf_misc.c: In function ‘GetIntRange’: /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/atlconf_misc.c:72: warning: format ‘%d’ expects type ‘int’, but argument 3 has type ‘long int’ /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/atlconf_misc.c:72: warning: format ‘%d’ expects type ‘int’, but argument 4 has type ‘long int’ /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/atlconf_misc.c:78: warning: format ‘%d’ expects type ‘int’, but argument 3 has type ‘long int’ /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/atlconf_misc.c:78: warning: format ‘%d’ expects type ‘int’, but argument 4 has type ‘long int’ /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/atlconf_misc.c: In function ‘GetIntVer’: /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/atlconf_misc.c:93: warning: format ‘%d’ expects type ‘int’, but argument 4 has type ‘long int’ /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/atlconf_misc.c: In function ‘ATL_mprintf’: /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/atlconf_misc.c:200: warning: format not a string literal and no format arguments /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/atlconf_misc.c: In function ‘GetFirstLong’: /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/atlconf_misc.c:230: warning: format ‘%ld’ expects type ‘long int *’, but argument 3 has type ‘long long int *’ /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/atlconf_misc.c: In function ‘GetEnter’: /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/atlconf_misc.c:371: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result atlconf_misc_BE.o: In function `CmndResults': atlconf_misc.c:(.text+0xbfa): warning: the use of `tmpnam' is dangerous, better use `mkstemp' Clock rate configured as 2101Mhz Maximum number of threads configured as 2 Cannot detect CPU throttling. x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/include -O2 -pipe -march=core2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=3072 -mtune=generic -c /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/probe_comp.c /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/probe_comp.c: In function ‘TestComps’: /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/probe_comp.c:831: warning: format ‘%d’ expects type ‘int *’, but argument 3 has type ‘enum F2CNAME *’ /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/probe_comp.c:831: warning: format ‘%d’ expects type ‘int *’, but argument 4 has type ‘enum F2CINT *’ /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/probe_comp.c:831: warning: format ‘%d’ expects type ‘int *’, but argument 5 has type ‘enum F2CSTRING *’ x86_64-pc-linux-gnu-gcc -I/var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/include -O2 -pipe -march=core2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=3072 -mtune=generic -o xprobe_comp probe_comp.o atlconf_misc.o atlconf_misc.o: In function `CmndResults': atlconf_misc.c:(.text+0xbfa): warning: the use of `tmpnam' is dangerous, better use `mkstemp' rm -f config1.out make atlas_run atldir=/var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build exe=xprobe_comp args="-v 0 -o atlconf.txt -O 1 -A 10 -Si nof77 0 -C ic 'x86_64-pc-linux-gnu-gcc' -F ic '-O2 -pipe -march=core2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=3072 -mtune=generic' -C sm 'x86_64-pc-linux-gnu-gcc' -F sm '-O2 -pipe -march=core2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=3072 -mtune=generic' -C dm 'x86_64-pc-linux-gnu-gcc' -F dm '-O2 -pipe -march=core2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=3072 -mtune=generic' -C sk 'x86_64-pc-linux-gnu-gcc' -F sk '-O2 -pipe -march=core2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=3072 -mtune=generic' -C dk 'x86_64-pc-linux-gnu-gcc' -F dk '-O2 -pipe -march=core2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=3072 -mtune=generic' -C xc 'x86_64-pc-linux-gnu-gcc' -F xc '-O2 -pipe -march=core2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=3072 -mtune=generic' -C if 'x86_64-pc-linux-gnu-gfortran' -F if '-O2' -b 64" \ redir=config1.out make[1]: Entering directory `/var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build' cd /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build ; ./xprobe_comp -v 0 -o atlconf.txt -O 1 -A 10 -Si nof77 0 -C ic 'x86_64-pc-linux-gnu-gcc' -F ic '-O2 -pipe -march=core2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=3072 -mtune=generic' -C sm 'x86_64-pc-linux-gnu-gcc' -F sm '-O2 -pipe -march=core2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=3072 -mtune=generic' -C dm 'x86_64-pc-linux-gnu-gcc' -F dm '-O2 -pipe -march=core2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=3072 -mtune=generic' -C sk 'x86_64-pc-linux-gnu-gcc' -F sk '-O2 -pipe -march=core2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=3072 -mtune=generic' -C dk 'x86_64-pc-linux-gnu-gcc' -F dk '-O2 -pipe -march=core2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=3072 -mtune=generic' -C xc 'x86_64-pc-linux-gnu-gcc' -F xc '-O2 -pipe -march=core2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=3072 -mtune=generic' -C if 'x86_64-pc-linux-gnu-gfortran' -F if '-O2' -b 64 > config1.out atlconf_misc.o: In function `CmndResults': atlconf_misc.c:(.text+0xbfa): warning: the use of `tmpnam' is dangerous, better use `mkstemp' make[1]: Leaving directory `/var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build' cat config1.out x86_64-pc-linux-gnu-gfortran -O2 -m64 -c /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/backend/flibchkF.f x86_64-pc-linux-gnu-gcc -O2 -pipe -march=core2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=3072 -mtune=generic -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.4.4 -o xflibchk /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/..//CONFIG/src/backend/flibchkC.c \ flibchkF.o -l gfortran -lm /bin/sh: line 1: 25454 Segmentation fault ./xconfig -d s /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build/../ -d b /var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS/gentoo-build -C ac x86_64-pc-linux-gnu-gcc -F ac '-O2 -pipe -march=core2 -msse4.1 --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=3072 -mtune=generic' -C if x86_64-pc-linux-gnu-gfortran -F if -O2 -Ss pmake '$(MAKE) -j1' -Si cputhrchk 0 -b 64 xconfig exited with 139 * ERROR: sci-libs/blas-atlas-3.8.0 failed: * configure failed * * Call stack: * ebuild.sh, line 56: Called src_unpack * environment, line 2506: Called die * The specific snippet of code: * ../configure --cc="$(tc-getCC)" --cflags="${CFLAGS}" --prefix="${D}/${DESTTREE}" --libdir="${D}/${DESTTREE}"/$(get_libdir)/atlas --incdir="${D}/${DESTTREE}"/include -C ac "$(tc-getCC)" -F ac "${CFLAGS}" -C if $(tc-getFC) -F if "${FFLAGS:--O2}" -Ss pmake "\$(MAKE) ${MAKEOPTS}" -Si cputhrchk 0 ${archselect} || die "configure failed" * * If you need support, post the output of 'emerge --info =sci-libs/blas-atlas-3.8.0', * the complete build log and the output of 'emerge -pqv =sci-libs/blas-atlas-3.8.0'. * The complete build log is located at '/var/tmp/portage/sci-libs/blas-atlas-3.8.0/temp/build.log'. * The ebuild environment file is located at '/var/tmp/portage/sci-libs/blas-atlas-3.8.0/temp/environment'. * S: '/var/tmp/portage/sci-libs/blas-atlas-3.8.0/work/ATLAS'