Go to:
Gentoo Home
Documentation
Forums
Lists
Bugs
Planet
Store
Wiki
Get Gentoo!
Gentoo's Bugzilla – Attachment 255439 Details for
Bug 346801
sci-biology/consed-20.0: attribute error: open with O_CREAT in second argument needs 3 arguments
Home
|
New
–
[Ex]
|
Browse
|
Search
|
Privacy Policy
|
[?]
|
Reports
|
Requests
|
Help
|
New Account
|
Log In
[x]
|
Forgot Password
Login:
[x]
consed-20.ebuild
consed-20.ebuild (text/plain), 2.20 KB, created by
Martin Mokrejš
on 2010-11-25 21:46:10 UTC
(
hide
)
Description:
consed-20.ebuild
Filename:
MIME Type:
Creator:
Martin Mokrejš
Created:
2010-11-25 21:46:10 UTC
Size:
2.20 KB
patch
obsolete
># Copyright 1999-2010 Gentoo Foundation ># Distributed under the terms of the GNU General Public License v2 ># $Header: /var/cvsroot/gentoo-x86/sci-biology/consed/consed-19-r2.ebuild,v 1.2 2010/10/10 21:20:04 ulm Exp $ > >EAPI=3 > >inherit toolchain-funcs > >DESCRIPTION="A genome sequence finishing program" >HOMEPAGE="http://bozeman.mbt.washington.edu/consed/consed.html" >SRC_URI="${P}-sources.tar.gz > ${P}-linux.tar.gz" > >LICENSE="phrap" >SLOT="0" >KEYWORDS="~amd64 ~x86" >IUSE="" > >DEPEND=">=x11-libs/openmotif-2.3:0" >RDEPEND="${DEPEND} > >=sci-biology/phred-000925 > >=sci-biology/phrap-1.080721" > >S="${WORKDIR}" > >RESTRICT="fetch" > >pkg_nofetch() { > einfo "Please visit ${HOMEPAGE} and obtain the file" > einfo "\"sources.tar.gz\", then rename it to \"${P}-sources.tar.gz\"" > einfo "and place it in ${DISTDIR}," > einfo "obtain the file" > einfo "\"consed_linux.tar.gz\", then rename it to \"${P}-linux.tar.gz\"" > einfo "and place it in ${DISTDIR}" >} > >src_prepare() { > sed -i '/#include/ s/<new.h>/<new>/' "${S}/main.cpp" || die > sed -i \ > -e '/CLIBS=/ s/$/ -lXm -lXt -lSM -lICE -lXext -lXmu -lXp -lm/' \ > -e 's/ARCHIVES=/ARCHIVES=\n_ARCHIVES=/' \ > -e 's/CFLGS=/CFLGS= ${CFLAGS} /' "${S}/makefile" || die > sed -i -e 's/CFLAGS=/CFLAGS += /' "${S}"/misc/*/Makefile || die > sed -i 's!\($szPhredParameterFile =\).*!\1 $ENV{PHRED_PARAMETER_FILE} || "'${EPREFIX}'/usr/share/phred/phredpar.dat";!' "${S}/scripts/"* || die >} > >src_compile() { > emake || die > emake -C misc/mktrace || die > emake -C misc/phd2fasta || die > (cd misc/454; $(tc-getCC) ${CFLAGS} sff2scf.c -o sff2scf) || die >} > >src_install() { > dobin consed misc/{mktrace/mktrace,phd2fasta/phd2fasta,454/sff2scf} || die > dobin scripts/* contributions/* || die > insinto /usr/lib/screenLibs > doins misc/*.{fa*,seq} || die > insinto /usr/share/${PN}/examples > doins -r standard polyphred autofinish assembly_view 454_newbler \ > align454reads align454reads_answer solexa_example \ > solexa_example_answer selectRegions selectRegionsAnswer || die > echo 'CONSED_HOME='${EPREFIX}'/usr' > "${S}/99consed" > doenvd "${S}/99consed" || die > dodoc README.txt *_announcement.txt || die >} > >pkg_postinst() { > einfo "Package documentation is available at" > einfo "http://www.phrap.org/consed/distributions/README.${PV}.0.txt" >}
You cannot view the attachment while viewing its details because your browser does not support IFRAMEs.
View the attachment on a separate page
.
View Attachment As Raw
Actions:
View
Attachments on
bug 346801
: 255439 |
259314