staden-2.0.0.ebuild

staden-2.0.0.ebuild (text/plain), 1.99 KB, created by Martin Mokrejš on 2010-10-08 11:09:35 UTC

# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $

inherit eutils flag-o-matic base autotools

DESCRIPTION="A fully developed set of DNA sequence assembly (Gap4), editing and analysis tools (Spin)."
HOMEPAGE="http://sourceforge.net/projects/staden"
SRC_URI="http://downloads.sourceforge.net/staden/staden-2.0.0b7-src.tar.gz"

LICENSE=""
SLOT="0"
KEYWORDS="~x86 ~amd64"
IUSE="fortran X amd64 png samtools curl tcl tk zlib itcl itk iwidgets"

# either g77 or gfortran must be available
# edit src/mk/linux.mk accordingly

#
# this is a glibc-2.9 issue, see https://sourceforge.net/tracker/index.php?func=detail&aid=2629155&group_id=100316&atid=627058
#
# 
#
DEPEND=">=dev-lang/tk-8.4
		>=dev-lang/tcl-8.4
		dev-tcltk/tklib
		>=sci-libs/io_lib-1.12.2
		>=sys-libs/zlib-1.2
		>=media-libs/libpng-1.2
		sci-biology/samtools
		>=app-arch/xz-utils-4.999"

# maybe we should depend on app-arch/lzma or app-arch/xz-utils?

RDEPEND="tcl? ( >=dev-tcltk/itcl-3.2 )
		tk? ( >=dev-tcltk/itk-3.2 )
		>=dev-tcltk/iwidgets-4.0"

src_unpack() {
	unpack ${A}
	cd ${WORKDIR}/staden-2.0.0b7-src || die "Cannot cd ${WORKDIR}/staden-2.0.0b7-src"
	#epatch "${FILESDIR}"/ax_lib_samtools.m4.patch || die "epatch failed"
	#epatch "${FILESDIR}"/Makefile.in.patch || die "epatch failed"
	#epatch "${FILESDIR}"/destdir.patch || die "epatch failed"
	#epatch "${FILESDIR}"/destdir2.patch || die "epatch failed"
	#epatch "${FILESDIR}"/staden-svn-20100925.patch || die "epatch failed"
	./bootstrap || die "bootstrap failed"
}

src_compile() {
	cd ${WORKDIR}/staden-2.0.0b7-src || die "Cannot cd ${WORKDIR}/staden-2.0.0b7-src"
	local myconf
	use X && myconf=" --with-x"
	myconf=" --with-tklib=/usr/lib/tklib0.5" # HACK
	use amd64 && myconf="${myconf} --enable-64bit"
	econf ${myconf} || die "configure failed"
	emake || die "emake failed"
}

src_install() {
	cd ${WORKDIR}/staden-2.0.0b7-src || die "Cannot cd ${WORKDIR}/staden-2.0.0b7-src"
	emake install DESTDIR="${D}" || die "make install failed"
}