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Lines 41-47
Link Here
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| 41 |
-e 's/ARCHIVES=/ARCHIVES=\n_ARCHIVES=/' \ |
41 |
-e 's/ARCHIVES=/ARCHIVES=\n_ARCHIVES=/' \ |
| 42 |
-e 's/CFLGS=/CFLGS= ${CFLAGS} /' "${S}/makefile" || die |
42 |
-e 's/CFLGS=/CFLGS= ${CFLAGS} /' "${S}/makefile" || die |
| 43 |
sed -i -e 's/CFLAGS=/CFLAGS += /' "${S}"/misc/*/Makefile || die |
43 |
sed -i -e 's/CFLAGS=/CFLAGS += /' "${S}"/misc/*/Makefile || die |
| 44 |
sed -i 's!\($szPhredParameterFile =\).*!\1 $ENV{PHRED_PARAMETER_FILE} || "${EPREFIX}/usr/share/phred/phredpar.dat";!' "${S}/scripts/"* || die |
44 |
sed -i 's!\($szPhredParameterFile =\).*!\1 $ENV{PHRED_PARAMETER_FILE} || "'${EPREFIX}'/usr/share/phred/phredpar.dat";!' "${S}/scripts/"* || die |
| 45 |
} |
45 |
} |
| 46 |
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46 |
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| 47 |
src_compile() { |
47 |
src_compile() { |
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Lines 60-66
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| 60 |
doins -r standard polyphred autofinish assembly_view 454_newbler \ |
60 |
doins -r standard polyphred autofinish assembly_view 454_newbler \ |
| 61 |
align454reads align454reads_answer solexa_example \ |
61 |
align454reads align454reads_answer solexa_example \ |
| 62 |
solexa_example_answer selectRegions selectRegionsAnswer || die |
62 |
solexa_example_answer selectRegions selectRegionsAnswer || die |
| 63 |
echo 'CONSED_HOME=${EPREFIX}/usr' > "${S}/99consed" |
63 |
echo 'CONSED_HOME='${EPREFIX}'/usr' > "${S}/99consed" |
| 64 |
doenvd "${S}/99consed" || die |
64 |
doenvd "${S}/99consed" || die |
| 65 |
dodoc README.txt *_announcement.txt || die |
65 |
dodoc README.txt *_announcement.txt || die |
| 66 |
} |
66 |
} |
