Build log

ucsc-genome-browser-223:20101003-011143.log (text/plain), 1.34 MB, created by Diego Elio Pettenò (RETIRED) on 2010-10-03 04:11:20 UTC

 * Package:    sci-biology/ucsc-genome-browser-223
 * Repository: gentoo
 * Maintainer: [e-mail] [e-mail]
 * USE:  elibc_glibc kernel_linux mysql test userland_GNU vhosts x86
>>> Unpacking source...
>>> Unpacking jksrc.v223.zip to /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work
>>> Source unpacked in /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work
>>> Preparing source in /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent ...
make -j14 -C src clean 
make: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src'
cd lib && make clean 
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib'
rm -f aliType.o apacheLog.o asParse.o axt.o axtAffine.o base64.o basicBed.o bbiRead.o bbiWrite.o bigBed.o binRange.o bits.o blastOut.o blastParse.o boxClump.o boxLump.o bPlusTree.o bwgCreate.o bwgQuery.o cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o cheapcgi.o cirTree.o codebias.o colHash.o common.o correlate.o crTree.o dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaMotif.o dnaseq.o dnautil.o dtdParse.o dystring.o emblParse.o errCatch.o errabort.o fa.o ffAli.o ffScore.o filePath.o fixColor.o flydna.o fof.o fuzzyShow.o gapCalc.o gdf.o gemfont.o genomeRangeTree.o gfNet.o gff.o gff3.o gfxPoly.o gifLabel.o gifcomp.o gifdecomp.o gifread.o gifwrite.o hash.o histogram.o hmmPfamParse.o hmmstats.o htmlPage.o htmshell.o https.o intExp.o intValTree.o internet.o itsa.o jointalign.o jpegSize.o keys.o kxTok.o linefile.o localmem.o log.o maf.o mafFromAxt.o mafScore.o md5.o memalloc.o memgfx.o mgCircle.o mgHugeFont.o mgLargeFont.o mgMediumFont.o mgPolygon.o mgSmallFont.o mgTinyFont.o mime.o net.o nib.o nibTwo.o nt4.o numObscure.o obscure.o oldGff.o oligoTm.o options.o osunix.o pairHmm.o phyloTree.o pipeline.o portimpl.o pngwrite.o psGfx.o psPoly.o pscmGfx.o psl.o pslGenoShow.o pslShow.o pslTbl.o pslTransMap.o pthreadWrap.o qa.o quickHeap.o quotedP.o ra.o rbTree.o rangeTree.o repMask.o rle.o rnautil.o rqlEval.o rqlParse.o rudp.o scoreWindow.o seg.o seqOut.o seqStats.o servBrcMcw.o servCrunx.o servcis.o servcl.o servmsII.o servpws.o shaRes.o slog.o snof.o snofmake.o snofsig.o spaceSaver.o spacedColumn.o spacedSeed.o splatAli.o sqlList.o sqlNum.o subText.o sufa.o sufx.o synQueue.o tabRow.o textOut.o tokenizer.o trix.o twoBit.o udc.o vGfx.o vGif.o vPng.o verbose.o wildcmp.o wormdna.o xAli.o xa.o xap.o xenshow.o xmlEscape.o xp.o zlibFace.o i686/jkweb.a
cd tests && make clean
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib/tests'
rm -rf *.o bin output *.tmp mimeTester.tmp mimeTester.out
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib/tests'
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib'
cd hg && make clean
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg'
cd lib && make clean
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/lib'
rm -f acemblyClass.o affyAllExonProbe.o affyAtlas.o affy10KDetails.o affy120KDetails.o affyOffset.o affyPairs.o agp.o agpFrag.o agpGap.o alignSeqSizes.o altGraph.o altGraphX.o ancientRref.o atomDb.o  axtInfo.o axtLib.o bactigPos.o bamFile.o baseMaskCommon.o bdgpExprLink.o bdgpGeneInfo.o bed.o bed5FloatScore.o bed5Pval.o bed6FloatScore.o bed12Source.o bed12wSeq.o bedCart.o bgiGeneInfo.o bgiGeneSnp.o bgiSnp.o bioImage.o blastTab.o blastzNet.o blatServers.o borf.o borkPseudoHom.o botDelay.o cart.o cartDb.o cdsEvidence.o cdsOrtho.o cdsPick.o cdsSpec.o ccdsInfo.o ccdsGeneMap.o celeraCoverage.o celeraDupPositive.o cgapSage/cgapSage.o cgapSage/cgapSageLib.o cgh.o chainCart.o chainDb.o chainLink.o chainNet.o chainNetDbLoad.o chicken13kInfo.o chromBins.o chr18deletions.o chromGraph.o chromGraphFactory.o chromInfo.o chromInserts.o chromKeeper.o clonePos.o codeBlast.o codeBlastScore.o cogs.o cogsxra.o columnInfo.o contigAcc.o coordConv.o cnpIafrate.o cnpIafrate2.o cnpLocke.o cnpRedon.o cnpSebat.o cnpSebat2.o cnpSharp2.o cnpSharpCutoff.o cnpSharpSample.o cnpSharp.o cpgIsland.o cpgIslandExt.o ctgPos.o ctgPos2.o customFactory.o customPp.o customTrack.o cutter.o cytoBand.o dbDb.o dbRIP.o dbSnpRs.o defaultDb.o delConrad2.o delHinds2.o dgv.o dless.o dnaMotifSql.o dnaProbe.o dv.o dvBed.o dvXref2.o easyGene.o ec.o ecCode.o ecAttribute.o ecAttributeCode.o encode/encodeErge.o encode/encodeErgeHssCellLines.o encode/encodeHapMapAlleleFreq.o encode/encodeIndels.o encode/encodePeak.o encode/encodeRegionInfo.o encode/encodeRegionInfoCustom.o encode/encodeRna.o encode/encodeStanfordPromoters.o encode/encodeStanfordPromotersAverage.o encode/pairedTagAlign.o encode/tagAlign.o ensFace.o ensInfo.o ensPhusionBlast.o ensXRefZfish.o est3.o estOrientInfo.o estPair.o exoFish.o expData.o expRecord.o exprBed.o fbTables.o featureBits.o findKGAlias.o findKGProtAlias.o fishClones.o flyBase2004Xref.o flyBaseSwissProt.o flyreg.o flyreg2.o gbExtFile.o gbWarn.o gbMiscDiff.o gbProtAnn.o gcPercent.o gbSeq.o genbank.o gencodeGeneClass.o gencodeIntron.o genMapDb.o geneBands.o geneCheck.o geneCheckDetails.o geneCheckWidget.o geneGraph.o genePred.o genePredReader.o geneSimilarities.o genoLay.o genomeRangeTreeFile.o genomicDups.o genomicSuperDups.o ggCluster.o ggDbIo.o ggDump.o ggGraph.o ggMrnaAli.o ggTypes.o glDbRep.o goa.o goaPart.o googleAnalytics.o growthCondition.o grp.o hapmapAllelesOrtho.o hapmapAllelesSummary.o hapmapPhaseIIISummary.o hapmapSnps.o hapmapSnpsCombined.o hCommon.o hCytoBand.o hdb.o hgColors.o hgConfig.o hgExp.o hgFind.o hgFindSpec.o hgFindSpecCustom.o hgGene.o hgMaf.o hgRelate.o hgSeq.o hgdpGeo.o hPrint.o hVarSubst.o hvGfx.o HInv.o hui.o humanParalog.o imageClone.o isochores.o ispyTables.o itemAttr.o itemConf.o jalview.o jaxOrtholog.o jaxQTL.o jaxQTL3.o jksql.o joiner.o jsHelper.o kg1ToKg2.o jgiGene.o kgAlias.o kgColor.o kgProtAlias.o kgXref.o knownInfo.o knownMore.o knownToSuper.o ld.o ld2.o lfs.o liftOver.o liftOverChain.o liftUp.o llaInfo.o lsSnpPdb.o lsSnpPdbChimera.o mafFrames.o mafGene.o mafSummary.o mammalPsg.o mapSts.o mcnBreakpoints.o metaChromGraph.o microarray.o minChromSize.o minGeneInfo.o mrnaMisMatch.o mouseOrtho.o mouseSyn.o mouseSynWhd.o mysqlTableStatus.o netAlign.o netCart.o nonCodingUi.o omimTitle.o ooUtils.o orthoAlleles.o pal.o pbStamp.o pcrResult.o pepPred.o plasEndPairs.o polyGenotype.o protFeat.o pscreen.o pseudoGeneLink.o pslReader.o pslWScore.o putaInfo.o qaSeq.o rangeTreeFile.o rankProp.o recombRate.o recombRateRat.o recombRateMouse.o refLink.o refSeqStatus.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o riken.o rhMapZfishInfo.o rikenBest.o rikenCluster.o rmskOut.o rnaFold.o rnaGene.o rnaGroup.o rnaHybridization.o rnaPLFold.o tRNAs.o gbRNAs.o snoRNAs.o lowelabPfamHit.o lowelabArkinOperonScore.o lowelabTIGROperonScore.o rnaSecStr.o tfbsConsFactors.o retroMrnaInfo.o roughAli.o transMapStuff.o transMapInfo.o transMapGene.o transMapSrc.o sage.o sageCounts.o sageExp.o sample.o sqlProg.o tfbsCons.o tfbsConsSites.o sanger22extra.o sangerGene.o sangerGeneToWBGeneID.o  sargassoSeaXra.o scopDes.o scoredRef.o sgdAbundance.o sgdClone.o sgdDescription.o sgdOther.o simpleNucDiff.o simpleRepeat.o snp.o snp125.o snp125CodingCoordless.o snpExceptions.o snpFasta.o snpMap.o snpTmp.o snpUi.o snp125Exceptions.o snp125Ui.o softPromoter.o softberryHom.o spDb.o splignAlign.o stanMad.o stsAlias.o stsInfo.o stsInfo2.o stsInfoMouse.o stsInfoMouseNew.o stsInfoRat.o stsMap.o stsMapMouse.o stsMapMouseNew.o stsMapRat.o stsMarker.o switchDbTss.o synMap.o synteny100000.o syntenyBerk.o syntenySanger.o tableDescriptions.o tableStatus.o targetDb.o tfbsConsMap.o taxonDivision.o taxonGeneticCode.o taxonName.o taxonNode.o taxonXref.o tigrCmrGene.o tigrOperon.o tilingPath.o traceInfo.o trackDb.o trackDbCustom.o trackLayout.o trackTable.o trackVersion.o trashDir.o transRegCode.o transRegCodeCondition.o transRegCodeProbe.o txCluster.o txCommon.o txEdgeBed.o txEdgeOrtho.o txGraph.o txInfo.o txRnaAccs.o validateGisaid.o vegaInfo.o vegaInfoZfish.o visiGene.o vntr.o wabAli.o web.o ncRna.o wgRna.o wigAsciiToBinary.o wigDataStream.o wiggle.o wiggleCart.o wiggleUtils.o wikiLink.o wikiTrack.o zdobnovSynt.o oreganno.o oregannoUi.o gvUi.o gv.o omicia.o protVar.o pgSnp.o alignInfo.o cddInfo.o loweutils.o cddDesc.o arCOGs.o arcogdesc.o megablastInfo.o;
rm -f ../../lib/i686/jkhgap.a;
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/lib'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/cartReset'
rm -f cartReset.o cartReset
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/cartReset'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/das'
rm -f das.o das
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/das'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgBlat'
rm -f hgBlat.o hgBlat
rm -f hgSs_*.fa hgSs_*.pslx
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgBlat'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgCgiData'
make[2]: `clean' is up to date.
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgCgiData'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgConvert'
rm -f hgConvert.o hgConvert
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgConvert'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgGateway'
rm -f hgGateway.o hgGateway
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgGateway'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgGene'
rm -f hgGene.o altSplice.o ctd.o dnaBindMotif.o domains.o gad.o flyBaseInfo.o go.o info.o links.o microarray.o method.o localization.o mrnaDescriptions.o otherOrgs.o pathways.o pseudoGene.o rnaStructure.o sequence.o swissProtComments.o synonym.o wikiTrack.o hgGene
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgGene'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgGenome'
rm -f browseRegions.o clickOnImage.o configure.o correlate.o hgGenome.o mainPage.o sortGenes.o upload.o usage.o custom.o wiggle.o maf.o bedList.o chromGraph.o import.o hgGenome
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgGenome'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgPcr'
rm -f hgPcr.o hgPcr
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgPcr'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgSession'
rm -f hgSession.o hgSession
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgSession'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgTables'
rm -f hgTables.o asObj.o bedList.o bigBed.o bigWig.o chromGraph.o compositeTrack.o custom.o filterFields.o gffOut.o identifiers.o intersect.o correlate.o correlatePlot.o joining.o maf.o mainPage.o microarrayTables.o rangeHistogram.o schema.o pal.o seqOut.o sumStats.o usage.o wiggle.o wikiTrack.o galaxy.o userRegions.o hgTables
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgTables'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgTracks'
rm -f hgTracks.o altGraphXTrack.o bamTrack.o bedGraph.o bedTrack.o bigBedTrack.o bigWigTrack.o chainTrack.o cgapSageTrack.o chromGraphTrack.o config.o contigTrack.o coverageTrack.o cytoBandTrack.o cutterTrack.o expRatioTracks.o factorSource.o goldTrack.o loweLabTracks.o mafTrack.o netTrack.o pslTrack.o rmskTrack.o sampleTracks.o simpleTracks.o switchGear.o transMapTracks.o wabaTrack.o wigTrack.o cds.o wigMafTrack.o encode.o variation.o transcriptome.o rnaFoldTrack.o retroGene.o hapmapTrack.o rnaPLFoldTrack.o wiki.o wikiTrack.o imageV2.o hgTracks
rm -f ct_hgwdev_*.bed hgtIdeo_*.gif hgt_*.gif
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgTracks'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgTrackUi'
rm -f hgTrackUi.o cgapSageUi.o encodePeakUi.o hgTrackUi
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgTrackUi'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgc'
rm -f hgc.o bamClick.o bigBedClick.o cgapSageClick.o encodeClick.o expClick.o mafClick.o hgdpClick.o regMotif.o wiggleClick.o retroClick.o lowelab.o rnaFoldClick.o transMapClick.o txCdsInfo.o ccdsClick.o mgcClick.o dbRIP.o wikiTrack.o virusClick.o hgc
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgc'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/cartDump'
rm -f cartDump.o cartDump
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/cartDump'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgNear'
rm -f hgNear.o advFilter.o afiAli.o association.o colTemplate.o configure.o customColumn.o examples.o expRatio.o flyBase.o getSeq.o go.o intronSize.o knownGene.o order.o pfam.o search.o userSettings.o hgNear
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgNear'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbGateway'
rm -f pbGateway.o pbGateway
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbGateway'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbTracks'
rm -f pbTracks.o pbTracks
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbTracks'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbGlobal'
rm -f pbGlobal.o pbGlobal
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbGlobal'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgLiftOver'
rm -f hgLiftOver.o hgLiftOver
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgLiftOver'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/visiGene/hgVisiGene'
rm -f hgVisiGene.o captionElement.o configPage.o printCaption.o probePage.o visiSearch.o hgVisiGene
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/visiGene/hgVisiGene'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/encode/mkEncodeFrameset'
echo "nothing to clean here"
nothing to clean here
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/encode/mkEncodeFrameset'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/encode/hgEncodeDataVersions'
rm -f hgEncodeDataVersions.o hgEncodeDataVersions
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/encode/hgEncodeDataVersions'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/encode/hgEncodeVocab'
rm -f hgEncodeVocab.o hgEncodeVocab
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/encode/hgEncodeVocab'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/phyloGif'
rm -f phyloGif.o phyloGif
rm -f test.gif testWeb.gif
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/phyloGif'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgCustom'
rm -f hgCustom.o hgCustom
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgCustom'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgPal'
rm -f hgPal.o hgPal
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgPal'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgCgiData'
make[2]: `clean' is up to date.
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgCgiData'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/js'
make[2]: Nothing to be done for `clean'.
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/js'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadBed'
rm -f hgLoadBed.o hgLoadBed tests/bed.tab
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadBed'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadWiggle'
rm -f test_data/chr1_0.wib test_data/chr1_0.wig test_data/chr1_1.wib \
test_data/chr1_1.wig test_data/chr1_2.wib test_data/chr1_2.wig \
test_data/chr1_begin.ascii test_data/chr1_end.ascii \
test_data/chr1_middle.ascii test_data/chrM.ascii test_data/chrM.wib \
test_data/chrM.wig test_data/wiggle.tab \
hgLoadWiggle.o hgDumpWiggle.o hgWiggle.o hgWiggle wigEncode.o wigEncode hgLoadWiggle
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadWiggle'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadMaf'
rm -f hgLoadMaf.o hgLoadMafSummary.o hgLoadMaf hgLoadMafSummary tests/bed.tab
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadMaf'
touch non-empty-rm.o
find . -name \*.o -print | xargs rm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg'
cd jkOwnLib && make clean
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/jkOwnLib'
rm -f bandExt.o crudeali.o ffAliHelp.o ffSeedExtend.o fuzzyFind.o genoFind.o gfBlatLib.o gfClientLib.o gfInternal.o gfOut.o gfPcrLib.o gfWebLib.o ooc.o patSpace.o splix.o supStitch.o trans3.o xenbig.o xensmall.o  ../lib/i686/jkOwnLib.a
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/jkOwnLib'
cd utils && make clean
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils'
touch non-empty-rm.o
find . -name \*.o -print | xargs rm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils'
touch non-empty-rm.o
find . -name \*.o -print | xargs rm
rm -f tags TAGS
make: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src'
make -j14 -C src/lib 
make: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o aliType.o -c aliType.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o apacheLog.o -c apacheLog.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o asParse.o -c asParse.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o axt.o -c axt.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o axtAffine.o -c axtAffine.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o base64.o -c base64.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o basicBed.o -c basicBed.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bbiRead.o -c bbiRead.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bbiWrite.o -c bbiWrite.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bigBed.o -c bigBed.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o binRange.o -c binRange.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bits.o -c bits.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o blastOut.o -c blastOut.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o blastParse.o -c blastParse.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o boxClump.o -c boxClump.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o boxLump.o -c boxLump.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bPlusTree.o -c bPlusTree.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bwgCreate.o -c bwgCreate.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bwgQuery.o -c bwgQuery.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o cda.o -c cda.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chain.o -c chain.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chainBlock.o -c chainBlock.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chainConnect.o -c chainConnect.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chainToAxt.o -c chainToAxt.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chainToPsl.o -c chainToPsl.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o cheapcgi.o -c cheapcgi.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o cirTree.o -c cirTree.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o codebias.o -c codebias.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o colHash.o -c colHash.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o common.o -c common.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o correlate.o -c correlate.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o crTree.o -c crTree.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dgRange.o -c dgRange.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o diGraph.o -c diGraph.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dlist.o -c dlist.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dnaLoad.o -c dnaLoad.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dnaMarkov.o -c dnaMarkov.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dnaMotif.o -c dnaMotif.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dnaseq.o -c dnaseq.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dnautil.o -c dnautil.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dtdParse.o -c dtdParse.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dystring.o -c dystring.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o emblParse.o -c emblParse.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o errCatch.o -c errCatch.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o errabort.o -c errabort.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o fa.o -c fa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ffAli.o -c ffAli.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ffScore.o -c ffScore.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o filePath.o -c filePath.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o fixColor.o -c fixColor.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o flydna.o -c flydna.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o fof.o -c fof.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o fuzzyShow.o -c fuzzyShow.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gapCalc.o -c gapCalc.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gdf.o -c gdf.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gemfont.o -c gemfont.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o genomeRangeTree.o -c genomeRangeTree.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gfNet.o -c gfNet.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gff.o -c gff.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gff3.o -c gff3.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gfxPoly.o -c gfxPoly.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gifLabel.o -c gifLabel.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gifcomp.o -c gifcomp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gifdecomp.o -c gifdecomp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gifread.o -c gifread.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gifwrite.o -c gifwrite.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hash.o -c hash.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o histogram.o -c histogram.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hmmPfamParse.o -c hmmPfamParse.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hmmstats.o -c hmmstats.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o htmlPage.o -c htmlPage.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o htmshell.o -c htmshell.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o https.o -c https.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o intExp.o -c intExp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o intValTree.o -c intValTree.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o internet.o -c internet.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o itsa.o -c itsa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o jointalign.o -c jointalign.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o jpegSize.o -c jpegSize.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o keys.o -c keys.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o kxTok.o -c kxTok.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o linefile.o -c linefile.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o localmem.o -c localmem.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o log.o -c log.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o maf.o -c maf.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mafFromAxt.o -c mafFromAxt.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mafScore.o -c mafScore.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o md5.o -c md5.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o memalloc.o -c memalloc.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o memgfx.o -c memgfx.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mgCircle.o -c mgCircle.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mgHugeFont.o -c mgHugeFont.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mgLargeFont.o -c mgLargeFont.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mgMediumFont.o -c mgMediumFont.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mgPolygon.o -c mgPolygon.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mgSmallFont.o -c mgSmallFont.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mgTinyFont.o -c mgTinyFont.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mime.o -c mime.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o net.o -c net.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o nib.o -c nib.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o nibTwo.o -c nibTwo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o nt4.o -c nt4.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o numObscure.o -c numObscure.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o obscure.o -c obscure.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o oldGff.o -c oldGff.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o oligoTm.o -c oligoTm.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o options.o -c options.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o osunix.o -c osunix.c
obscure.c: In function ‘incCounterFile’:
obscure.c:34:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pairHmm.o -c pairHmm.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o phyloTree.o -c phyloTree.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pipeline.o -c pipeline.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o portimpl.o -c portimpl.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pngwrite.o -c pngwrite.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o psGfx.o -c psGfx.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o psPoly.o -c psPoly.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pscmGfx.o -c pscmGfx.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o psl.o -c psl.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslGenoShow.o -c pslGenoShow.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslShow.o -c pslShow.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslTbl.o -c pslTbl.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslTransMap.o -c pslTransMap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pthreadWrap.o -c pthreadWrap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o qa.o -c qa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o quickHeap.o -c quickHeap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o quotedP.o -c quotedP.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ra.o -c ra.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o rbTree.o -c rbTree.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o rangeTree.o -c rangeTree.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o repMask.o -c repMask.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o rle.o -c rle.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o rnautil.o -c rnautil.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o rqlEval.o -c rqlEval.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o rqlParse.o -c rqlParse.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o rudp.o -c rudp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o scoreWindow.o -c scoreWindow.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o seg.o -c seg.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o seqOut.o -c seqOut.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o seqStats.o -c seqStats.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o servBrcMcw.o -c servBrcMcw.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o servCrunx.o -c servCrunx.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o servcis.o -c servcis.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o servcl.o -c servcl.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o servmsII.o -c servmsII.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o servpws.o -c servpws.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o shaRes.o -c shaRes.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o slog.o -c slog.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o snof.o -c snof.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o snofmake.o -c snofmake.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o snofsig.o -c snofsig.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o spaceSaver.o -c spaceSaver.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o spacedColumn.o -c spacedColumn.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o spacedSeed.o -c spacedSeed.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o splatAli.o -c splatAli.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o sqlList.o -c sqlList.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o sqlNum.o -c sqlNum.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o subText.o -c subText.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o sufa.o -c sufa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o sufx.o -c sufx.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o synQueue.o -c synQueue.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o tabRow.o -c tabRow.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o textOut.o -c textOut.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o tokenizer.o -c tokenizer.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o trix.o -c trix.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o twoBit.o -c twoBit.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o udc.o -c udc.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o vGfx.o -c vGfx.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o vGif.o -c vGif.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o vPng.o -c vPng.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o verbose.o -c verbose.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o wildcmp.o -c wildcmp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o wormdna.o -c wormdna.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o xAli.o -c xAli.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o xa.o -c xa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o xap.o -c xap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o xenshow.o -c xenshow.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o xmlEscape.o -c xmlEscape.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o xp.o -c xp.c
twoBit.c: In function ‘twoBitWriteOne’:
twoBit.c:201:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
twoBit.c:203:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
twoBit.c:209:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
twoBit.c:211:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o zlibFace.o -c zlibFace.c
ar rcus i686/jkweb.a aliType.o apacheLog.o asParse.o axt.o axtAffine.o base64.o basicBed.o bbiRead.o bbiWrite.o bigBed.o binRange.o bits.o blastOut.o blastParse.o boxClump.o boxLump.o bPlusTree.o bwgCreate.o bwgQuery.o cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o cheapcgi.o cirTree.o codebias.o colHash.o common.o correlate.o crTree.o dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaMotif.o dnaseq.o dnautil.o dtdParse.o dystring.o emblParse.o errCatch.o errabort.o fa.o ffAli.o ffScore.o filePath.o fixColor.o flydna.o fof.o fuzzyShow.o gapCalc.o gdf.o gemfont.o genomeRangeTree.o gfNet.o gff.o gff3.o gfxPoly.o gifLabel.o gifcomp.o gifdecomp.o gifread.o gifwrite.o hash.o histogram.o hmmPfamParse.o hmmstats.o htmlPage.o htmshell.o https.o intExp.o intValTree.o internet.o itsa.o jointalign.o jpegSize.o keys.o kxTok.o linefile.o localmem.o log.o maf.o mafFromAxt.o mafScore.o md5.o memalloc.o memgfx.o mgCircle.o mgHugeFont.o mgLargeFont.o mgMediumFont.o mgPolygon.o mgSmallFont.o mgTinyFont.o mime.o net.o nib.o nibTwo.o nt4.o numObscure.o obscure.o oldGff.o oligoTm.o options.o osunix.o pairHmm.o phyloTree.o pipeline.o portimpl.o pngwrite.o psGfx.o psPoly.o pscmGfx.o psl.o pslGenoShow.o pslShow.o pslTbl.o pslTransMap.o pthreadWrap.o qa.o quickHeap.o quotedP.o ra.o rbTree.o rangeTree.o repMask.o rle.o rnautil.o rqlEval.o rqlParse.o rudp.o scoreWindow.o seg.o seqOut.o seqStats.o servBrcMcw.o servCrunx.o servcis.o servcl.o servmsII.o servpws.o shaRes.o slog.o snof.o snofmake.o snofsig.o spaceSaver.o spacedColumn.o spacedSeed.o splatAli.o sqlList.o sqlNum.o subText.o sufa.o sufx.o synQueue.o tabRow.o textOut.o tokenizer.o trix.o twoBit.o udc.o vGfx.o vGif.o vPng.o verbose.o wildcmp.o wormdna.o xAli.o xa.o xap.o xenshow.o xmlEscape.o xp.o zlibFace.o
make: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib'
make -j14 -C src/jkOwnLib 
make: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/jkOwnLib'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bandExt.o -c bandExt.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o crudeali.o -c crudeali.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ffAliHelp.o -c ffAliHelp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ffSeedExtend.o -c ffSeedExtend.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o fuzzyFind.o -c fuzzyFind.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o genoFind.o -c genoFind.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gfBlatLib.o -c gfBlatLib.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gfClientLib.o -c gfClientLib.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gfInternal.o -c gfInternal.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gfOut.o -c gfOut.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gfPcrLib.o -c gfPcrLib.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gfWebLib.o -c gfWebLib.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ooc.o -c ooc.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o patSpace.o -c patSpace.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o splix.o -c splix.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o supStitch.o -c supStitch.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o trans3.o -c trans3.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o xenbig.o -c xenbig.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o xensmall.o -c xensmall.c
ar rcus ../lib/i686/jkOwnLib.a bandExt.o crudeali.o ffAliHelp.o ffSeedExtend.o fuzzyFind.o genoFind.o gfBlatLib.o gfClientLib.o gfInternal.o gfOut.o gfPcrLib.o gfWebLib.o ooc.o patSpace.o splix.o supStitch.o trans3.o xenbig.o xensmall.o 
make: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/jkOwnLib'
make -j14 -C src/utils/stringify 
make: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/stringify'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o stringify.o -c stringify.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/stringify stringify.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/stringify
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/stringify
make: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/stringify'
make -j14 -C src blatSuite 
make: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src'
cd lib && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib'
ar rcus i686/jkweb.a aliType.o apacheLog.o asParse.o axt.o axtAffine.o base64.o basicBed.o bbiRead.o bbiWrite.o bigBed.o binRange.o bits.o blastOut.o blastParse.o boxClump.o boxLump.o bPlusTree.o bwgCreate.o bwgQuery.o cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o cheapcgi.o cirTree.o codebias.o colHash.o common.o correlate.o crTree.o dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaMotif.o dnaseq.o dnautil.o dtdParse.o dystring.o emblParse.o errCatch.o errabort.o fa.o ffAli.o ffScore.o filePath.o fixColor.o flydna.o fof.o fuzzyShow.o gapCalc.o gdf.o gemfont.o genomeRangeTree.o gfNet.o gff.o gff3.o gfxPoly.o gifLabel.o gifcomp.o gifdecomp.o gifread.o gifwrite.o hash.o histogram.o hmmPfamParse.o hmmstats.o htmlPage.o htmshell.o https.o intExp.o intValTree.o internet.o itsa.o jointalign.o jpegSize.o keys.o kxTok.o linefile.o localmem.o log.o maf.o mafFromAxt.o mafScore.o md5.o memalloc.o memgfx.o mgCircle.o mgHugeFont.o mgLargeFont.o mgMediumFont.o mgPolygon.o mgSmallFont.o mgTinyFont.o mime.o net.o nib.o nibTwo.o nt4.o numObscure.o obscure.o oldGff.o oligoTm.o options.o osunix.o pairHmm.o phyloTree.o pipeline.o portimpl.o pngwrite.o psGfx.o psPoly.o pscmGfx.o psl.o pslGenoShow.o pslShow.o pslTbl.o pslTransMap.o pthreadWrap.o qa.o quickHeap.o quotedP.o ra.o rbTree.o rangeTree.o repMask.o rle.o rnautil.o rqlEval.o rqlParse.o rudp.o scoreWindow.o seg.o seqOut.o seqStats.o servBrcMcw.o servCrunx.o servcis.o servcl.o servmsII.o servpws.o shaRes.o slog.o snof.o snofmake.o snofsig.o spaceSaver.o spacedColumn.o spacedSeed.o splatAli.o sqlList.o sqlNum.o subText.o sufa.o sufx.o synQueue.o tabRow.o textOut.o tokenizer.o trix.o twoBit.o udc.o vGfx.o vGif.o vPng.o verbose.o wildcmp.o wormdna.o xAli.o xa.o xap.o xenshow.o xmlEscape.o xp.o zlibFace.o
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib'
cd jkOwnLib && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/jkOwnLib'
make[1]: `../lib/i686/jkOwnLib.a' is up to date.
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/jkOwnLib'
cd blat && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/blat'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o blat.o -c blat.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blat blat.o ../lib/i686/jkOwnLib.a ../lib/i686/jkweb.a   -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blat
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blat
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/blat'
cd gfClient && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/gfClient'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gfClient.o -c gfClient.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gfClient gfClient.o ../lib/i686/jkOwnLib.a ../lib/i686/jkweb.a   -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gfClient
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gfClient
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/gfClient'
cd gfServer && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/gfServer'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gfServer.o -c gfServer.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gfServer gfServer.o ../lib/i686/jkOwnLib.a ../lib/i686/jkweb.a   -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gfServer
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gfServer
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/gfServer'
cd webBlat && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/webBlat'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o webBlat.o -c webBlat.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o webBlat webBlat.o ../lib/i686/jkOwnLib.a ../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  webBlat
skipping strip webBlat
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/webBlat'
cd hg/pslPretty && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslPretty'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslPretty.o -c pslPretty.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslPretty pslPretty.o ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslPretty'
cd hg/pslReps && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslReps'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslReps.o -c pslReps.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslReps pslReps.o  ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslReps'
cd hg/pslSort && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslSort'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslSort.o -c pslSort.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslSort pslSort.o ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslSort'
cd utils/nibFrag && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/nibFrag'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o nibFrag.o -c nibFrag.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibFrag nibFrag.o ../../lib/i686/jkweb.a
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibFrag
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibFrag
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/nibFrag'
cd utils/faToNib && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faToNib'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o faToNib.o -c faToNib.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToNib faToNib.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToNib
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToNib
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faToNib'
cd utils/faToTwoBit && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faToTwoBit'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o faToTwoBit.o -c faToTwoBit.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToTwoBit faToTwoBit.o ../../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToTwoBit
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToTwoBit
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faToTwoBit'
cd utils/twoBitToFa && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/twoBitToFa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o twoBitToFa.o -c twoBitToFa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitToFa twoBitToFa.o ../../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitToFa
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitToFa
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/twoBitToFa'
cd utils/twoBitInfo && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/twoBitInfo'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o twoBitInfo.o -c twoBitInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitInfo twoBitInfo.o ../../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitInfo
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitInfo
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/twoBitInfo'
cd isPcr && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/isPcr'
cd gfPcr && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/isPcr/gfPcr'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gfPcr.o -c gfPcr.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gfPcr gfPcr.o ../../lib/i686/jkOwnLib.a ../../lib/i686/jkweb.a  -lm 
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/isPcr/gfPcr'
cd isPcr && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/isPcr/isPcr'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o isPcr.o -c isPcr.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/isPcr isPcr.o ../../lib/i686/jkOwnLib.a ../../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/isPcr
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/isPcr
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/isPcr/isPcr'
cd webPcr && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/isPcr/webPcr'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o webPcr.o -c webPcr.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o webPcr webPcr.o ../../lib/i686/jkOwnLib.a ../../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  webPcr
skipping strip webPcr
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/isPcr/webPcr'
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/isPcr'
cd blatz && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/blatz'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o standalone.o -c standalone.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o align.o -c align.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bzp.o -c bzp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gapless.o -c gapless.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o index.o -c index.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o output.o -c output.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o client.o -c client.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o server.o -c server.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blatzClient client.o bzp.o ../lib/i686/jkOwnLib.a ../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blatzClient
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blatzClient
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blatz standalone.o align.o bzp.o gapless.o index.o output.o ../lib/i686/jkOwnLib.a ../lib/i686/jkweb.a  -lm 
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blatzServer server.o align.o bzp.o gapless.o index.o output.o ../lib/i686/jkOwnLib.a ../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blatzServer
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blatzServer
echo made
made
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/blatz'
make: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src'
make -j14 -j1 -C src/hg utils 
make: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg'
cd lib && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/lib'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o acemblyClass.o -c acemblyClass.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o affyAllExonProbe.o -c affyAllExonProbe.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o affyAtlas.o -c affyAtlas.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o affy10KDetails.o -c affy10KDetails.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o affy120KDetails.o -c affy120KDetails.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o affyOffset.o -c affyOffset.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o affyPairs.o -c affyPairs.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o agp.o -c agp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o agpFrag.o -c agpFrag.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o agpGap.o -c agpGap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o alignSeqSizes.o -c alignSeqSizes.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o altGraph.o -c altGraph.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o altGraphX.o -c altGraphX.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ancientRref.o -c ancientRref.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o atomDb.o -c atomDb.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o axtInfo.o -c axtInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o axtLib.o -c axtLib.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bactigPos.o -c bactigPos.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bamFile.o -c bamFile.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o baseMaskCommon.o -c baseMaskCommon.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bdgpExprLink.o -c bdgpExprLink.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bdgpGeneInfo.o -c bdgpGeneInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bed.o -c bed.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bed5FloatScore.o -c bed5FloatScore.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bed5Pval.o -c bed5Pval.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bed6FloatScore.o -c bed6FloatScore.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bed12Source.o -c bed12Source.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bed12wSeq.o -c bed12wSeq.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bedCart.o -c bedCart.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bgiGeneInfo.o -c bgiGeneInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bgiGeneSnp.o -c bgiGeneSnp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bgiSnp.o -c bgiSnp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o bioImage.o -c bioImage.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o blastTab.o -c blastTab.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o blastzNet.o -c blastzNet.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o blatServers.o -c blatServers.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o borf.o -c borf.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o borkPseudoHom.o -c borkPseudoHom.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o botDelay.o -c botDelay.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cart.o -c cart.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cartDb.o -c cartDb.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cdsEvidence.o -c cdsEvidence.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cdsOrtho.o -c cdsOrtho.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cdsPick.o -c cdsPick.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cdsSpec.o -c cdsSpec.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ccdsInfo.o -c ccdsInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ccdsGeneMap.o -c ccdsGeneMap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o celeraCoverage.o -c celeraCoverage.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o celeraDupPositive.o -c celeraDupPositive.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cgapSage/cgapSage.o -c cgapSage/cgapSage.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cgapSage/cgapSageLib.o -c cgapSage/cgapSageLib.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cgh.o -c cgh.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chainCart.o -c chainCart.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chainDb.o -c chainDb.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chainLink.o -c chainLink.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chainNet.o -c chainNet.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chainNetDbLoad.o -c chainNetDbLoad.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chicken13kInfo.o -c chicken13kInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chromBins.o -c chromBins.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chr18deletions.o -c chr18deletions.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chromGraph.o -c chromGraph.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chromGraphFactory.o -c chromGraphFactory.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chromInfo.o -c chromInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chromInserts.o -c chromInserts.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o chromKeeper.o -c chromKeeper.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o clonePos.o -c clonePos.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o codeBlast.o -c codeBlast.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o codeBlastScore.o -c codeBlastScore.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cogs.o -c cogs.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cogsxra.o -c cogsxra.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o columnInfo.o -c columnInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o contigAcc.o -c contigAcc.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o coordConv.o -c coordConv.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cnpIafrate.o -c cnpIafrate.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cnpIafrate2.o -c cnpIafrate2.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cnpLocke.o -c cnpLocke.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cnpRedon.o -c cnpRedon.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cnpSebat.o -c cnpSebat.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cnpSebat2.o -c cnpSebat2.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cnpSharp2.o -c cnpSharp2.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cnpSharpCutoff.o -c cnpSharpCutoff.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cnpSharpSample.o -c cnpSharpSample.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cnpSharp.o -c cnpSharp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cpgIsland.o -c cpgIsland.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cpgIslandExt.o -c cpgIslandExt.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ctgPos.o -c ctgPos.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ctgPos2.o -c ctgPos2.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o customFactory.o -c customFactory.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o customPp.o -c customPp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o customTrack.o -c customTrack.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cutter.o -c cutter.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cytoBand.o -c cytoBand.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o dbDb.o -c dbDb.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o dbRIP.o -c dbRIP.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o dbSnpRs.o -c dbSnpRs.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o defaultDb.o -c defaultDb.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o delConrad2.o -c delConrad2.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o delHinds2.o -c delHinds2.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o dgv.o -c dgv.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o dless.o -c dless.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o dnaMotifSql.o -c dnaMotifSql.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o dnaProbe.o -c dnaProbe.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o dv.o -c dv.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o dvBed.o -c dvBed.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o dvXref2.o -c dvXref2.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o easyGene.o -c easyGene.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ec.o -c ec.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ecCode.o -c ecCode.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ecAttribute.o -c ecAttribute.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ecAttributeCode.o -c ecAttributeCode.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/encodeErge.o -c encode/encodeErge.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/encodeErgeHssCellLines.o -c encode/encodeErgeHssCellLines.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/encodeHapMapAlleleFreq.o -c encode/encodeHapMapAlleleFreq.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/encodeIndels.o -c encode/encodeIndels.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/encodePeak.o -c encode/encodePeak.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/encodeRegionInfo.o -c encode/encodeRegionInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/encodeRegionInfoCustom.o -c encode/encodeRegionInfoCustom.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/encodeRna.o -c encode/encodeRna.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/encodeStanfordPromoters.o -c encode/encodeStanfordPromoters.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/encodeStanfordPromotersAverage.o -c encode/encodeStanfordPromotersAverage.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/pairedTagAlign.o -c encode/pairedTagAlign.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o encode/tagAlign.o -c encode/tagAlign.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ensFace.o -c ensFace.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ensInfo.o -c ensInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ensPhusionBlast.o -c ensPhusionBlast.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ensXRefZfish.o -c ensXRefZfish.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o est3.o -c est3.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o estOrientInfo.o -c estOrientInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o estPair.o -c estPair.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o exoFish.o -c exoFish.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o expData.o -c expData.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o expRecord.o -c expRecord.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o exprBed.o -c exprBed.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o fbTables.o -c fbTables.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o featureBits.o -c featureBits.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o findKGAlias.o -c findKGAlias.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o findKGProtAlias.o -c findKGProtAlias.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o fishClones.o -c fishClones.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o flyBase2004Xref.o -c flyBase2004Xref.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o flyBaseSwissProt.o -c flyBaseSwissProt.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o flyreg.o -c flyreg.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o flyreg2.o -c flyreg2.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o gbExtFile.o -c gbExtFile.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o gbWarn.o -c gbWarn.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o gbMiscDiff.o -c gbMiscDiff.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o gbProtAnn.o -c gbProtAnn.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o gcPercent.o -c gcPercent.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o gbSeq.o -c gbSeq.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o genbank.o -c genbank.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o gencodeGeneClass.o -c gencodeGeneClass.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o gencodeIntron.o -c gencodeIntron.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o genMapDb.o -c genMapDb.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o geneBands.o -c geneBands.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o geneCheck.o -c geneCheck.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o geneCheckDetails.o -c geneCheckDetails.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o geneCheckWidget.o -c geneCheckWidget.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o geneGraph.o -c geneGraph.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o genePred.o -c genePred.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o genePredReader.o -c genePredReader.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o geneSimilarities.o -c geneSimilarities.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o genoLay.o -c genoLay.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o genomeRangeTreeFile.o -c genomeRangeTreeFile.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o genomicDups.o -c genomicDups.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o genomicSuperDups.o -c genomicSuperDups.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ggCluster.o -c ggCluster.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ggDbIo.o -c ggDbIo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ggDump.o -c ggDump.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ggGraph.o -c ggGraph.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ggMrnaAli.o -c ggMrnaAli.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ggTypes.o -c ggTypes.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o glDbRep.o -c glDbRep.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o goa.o -c goa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o goaPart.o -c goaPart.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o googleAnalytics.o -c googleAnalytics.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o growthCondition.o -c growthCondition.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o grp.o -c grp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hapmapAllelesOrtho.o -c hapmapAllelesOrtho.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hapmapAllelesSummary.o -c hapmapAllelesSummary.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hapmapPhaseIIISummary.o -c hapmapPhaseIIISummary.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hapmapSnps.o -c hapmapSnps.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hapmapSnpsCombined.o -c hapmapSnpsCombined.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hCommon.o -c hCommon.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hCytoBand.o -c hCytoBand.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hdb.o -c hdb.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgColors.o -c hgColors.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgConfig.o -c hgConfig.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgExp.o -c hgExp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgFind.o -c hgFind.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgFindSpec.o -c hgFindSpec.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgFindSpecCustom.o -c hgFindSpecCustom.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgGene.o -c hgGene.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgMaf.o -c hgMaf.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgRelate.o -c hgRelate.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgSeq.o -c hgSeq.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hgdpGeo.o -c hgdpGeo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hPrint.o -c hPrint.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hVarSubst.o -c hVarSubst.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hvGfx.o -c hvGfx.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o HInv.o -c HInv.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o hui.o -c hui.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o humanParalog.o -c humanParalog.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o imageClone.o -c imageClone.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o isochores.o -c isochores.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ispyTables.o -c ispyTables.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o itemAttr.o -c itemAttr.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o itemConf.o -c itemConf.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o jalview.o -c jalview.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o jaxOrtholog.o -c jaxOrtholog.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o jaxQTL.o -c jaxQTL.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o jaxQTL3.o -c jaxQTL3.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o jksql.o -c jksql.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o joiner.o -c joiner.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o jsHelper.o -c jsHelper.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o kg1ToKg2.o -c kg1ToKg2.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o jgiGene.o -c jgiGene.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o kgAlias.o -c kgAlias.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o kgColor.o -c kgColor.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o kgProtAlias.o -c kgProtAlias.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o kgXref.o -c kgXref.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o knownInfo.o -c knownInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o knownMore.o -c knownMore.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o knownToSuper.o -c knownToSuper.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ld.o -c ld.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ld2.o -c ld2.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o lfs.o -c lfs.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o liftOver.o -c liftOver.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o liftOverChain.o -c liftOverChain.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o liftUp.o -c liftUp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o llaInfo.o -c llaInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o lsSnpPdb.o -c lsSnpPdb.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o lsSnpPdbChimera.o -c lsSnpPdbChimera.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mafFrames.o -c mafFrames.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mafGene.o -c mafGene.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mafSummary.o -c mafSummary.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mammalPsg.o -c mammalPsg.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mapSts.o -c mapSts.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mcnBreakpoints.o -c mcnBreakpoints.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o metaChromGraph.o -c metaChromGraph.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o microarray.o -c microarray.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o minChromSize.o -c minChromSize.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o minGeneInfo.o -c minGeneInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mrnaMisMatch.o -c mrnaMisMatch.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mouseOrtho.o -c mouseOrtho.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mouseSyn.o -c mouseSyn.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mouseSynWhd.o -c mouseSynWhd.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o mysqlTableStatus.o -c mysqlTableStatus.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o netAlign.o -c netAlign.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o netCart.o -c netCart.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o nonCodingUi.o -c nonCodingUi.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o omimTitle.o -c omimTitle.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ooUtils.o -c ooUtils.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o orthoAlleles.o -c orthoAlleles.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o pal.o -c pal.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o pbStamp.o -c pbStamp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o pcrResult.o -c pcrResult.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o pepPred.o -c pepPred.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o plasEndPairs.o -c plasEndPairs.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o polyGenotype.o -c polyGenotype.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o protFeat.o -c protFeat.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o pscreen.o -c pscreen.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o pseudoGeneLink.o -c pseudoGeneLink.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o pslReader.o -c pslReader.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o pslWScore.o -c pslWScore.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o putaInfo.o -c putaInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o qaSeq.o -c qaSeq.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rangeTreeFile.o -c rangeTreeFile.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rankProp.o -c rankProp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o recombRate.o -c recombRate.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o recombRateRat.o -c recombRateRat.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o recombRateMouse.o -c recombRateMouse.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o refLink.o -c refLink.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o refSeqStatus.o -c refSeqStatus.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rgdQtl.o -c rgdQtl.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o riken.o -c riken.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rhMapZfishInfo.o -c rhMapZfishInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rikenBest.o -c rikenBest.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rikenCluster.o -c rikenCluster.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rmskOut.o -c rmskOut.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rnaFold.o -c rnaFold.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rnaGene.o -c rnaGene.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rnaGroup.o -c rnaGroup.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rnaHybridization.o -c rnaHybridization.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rnaPLFold.o -c rnaPLFold.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o tRNAs.o -c tRNAs.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o gbRNAs.o -c gbRNAs.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snoRNAs.o -c snoRNAs.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o lowelabPfamHit.o -c lowelabPfamHit.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o lowelabArkinOperonScore.o -c lowelabArkinOperonScore.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o lowelabTIGROperonScore.o -c lowelabTIGROperonScore.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o rnaSecStr.o -c rnaSecStr.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o tfbsConsFactors.o -c tfbsConsFactors.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o retroMrnaInfo.o -c retroMrnaInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o roughAli.o -c roughAli.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o transMapStuff.o -c transMapStuff.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o transMapInfo.o -c transMapInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o transMapGene.o -c transMapGene.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o transMapSrc.o -c transMapSrc.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sage.o -c sage.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sageCounts.o -c sageCounts.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sageExp.o -c sageExp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sample.o -c sample.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sqlProg.o -c sqlProg.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o tfbsCons.o -c tfbsCons.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o tfbsConsSites.o -c tfbsConsSites.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sanger22extra.o -c sanger22extra.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sangerGene.o -c sangerGene.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sangerGeneToWBGeneID.o -c sangerGeneToWBGeneID.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sargassoSeaXra.o -c sargassoSeaXra.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o scopDes.o -c scopDes.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o scoredRef.o -c scoredRef.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sgdAbundance.o -c sgdAbundance.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sgdClone.o -c sgdClone.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sgdDescription.o -c sgdDescription.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o sgdOther.o -c sgdOther.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o simpleNucDiff.o -c simpleNucDiff.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o simpleRepeat.o -c simpleRepeat.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snp.o -c snp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snp125.o -c snp125.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snp125CodingCoordless.o -c snp125CodingCoordless.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snpExceptions.o -c snpExceptions.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snpFasta.o -c snpFasta.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snpMap.o -c snpMap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snpTmp.o -c snpTmp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snpUi.o -c snpUi.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snp125Exceptions.o -c snp125Exceptions.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o snp125Ui.o -c snp125Ui.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o softPromoter.o -c softPromoter.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o softberryHom.o -c softberryHom.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o spDb.o -c spDb.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o splignAlign.o -c splignAlign.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stanMad.o -c stanMad.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsAlias.o -c stsAlias.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsInfo.o -c stsInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsInfo2.o -c stsInfo2.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsInfoMouse.o -c stsInfoMouse.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsInfoMouseNew.o -c stsInfoMouseNew.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsInfoRat.o -c stsInfoRat.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsMap.o -c stsMap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsMapMouse.o -c stsMapMouse.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsMapMouseNew.o -c stsMapMouseNew.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsMapRat.o -c stsMapRat.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o stsMarker.o -c stsMarker.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o switchDbTss.o -c switchDbTss.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o synMap.o -c synMap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o synteny100000.o -c synteny100000.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o syntenyBerk.o -c syntenyBerk.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o syntenySanger.o -c syntenySanger.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o tableDescriptions.o -c tableDescriptions.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o tableStatus.o -c tableStatus.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o targetDb.o -c targetDb.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o tfbsConsMap.o -c tfbsConsMap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o taxonDivision.o -c taxonDivision.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o taxonGeneticCode.o -c taxonGeneticCode.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o taxonName.o -c taxonName.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o taxonNode.o -c taxonNode.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o taxonXref.o -c taxonXref.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o tigrCmrGene.o -c tigrCmrGene.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o tigrOperon.o -c tigrOperon.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o tilingPath.o -c tilingPath.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o traceInfo.o -c traceInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o trackDb.o -c trackDb.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o trackDbCustom.o -c trackDbCustom.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o trackLayout.o -c trackLayout.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o trackTable.o -c trackTable.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o trackVersion.o -c trackVersion.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o trashDir.o -c trashDir.c
trashDir.c: In function ‘copyFileToTrash’:
trashDir.c:58:12: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o transRegCode.o -c transRegCode.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o transRegCodeCondition.o -c transRegCodeCondition.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o transRegCodeProbe.o -c transRegCodeProbe.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o txCluster.o -c txCluster.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o txCommon.o -c txCommon.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o txEdgeBed.o -c txEdgeBed.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o txEdgeOrtho.o -c txEdgeOrtho.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o txGraph.o -c txGraph.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o txInfo.o -c txInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o txRnaAccs.o -c txRnaAccs.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o validateGisaid.o -c validateGisaid.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o vegaInfo.o -c vegaInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o vegaInfoZfish.o -c vegaInfoZfish.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o visiGene.o -c visiGene.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o vntr.o -c vntr.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o wabAli.o -c wabAli.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o web.o -c web.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o ncRna.o -c ncRna.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o wgRna.o -c wgRna.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o wigAsciiToBinary.o -c wigAsciiToBinary.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o wigDataStream.o -c wigDataStream.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o wiggle.o -c wiggle.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o wiggleCart.o -c wiggleCart.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o wiggleUtils.o -c wiggleUtils.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o wikiLink.o -c wikiLink.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o wikiTrack.o -c wikiTrack.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o zdobnovSynt.o -c zdobnovSynt.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o oreganno.o -c oreganno.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o oregannoUi.o -c oregannoUi.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o gvUi.o -c gvUi.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o gv.o -c gv.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o omicia.o -c omicia.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o protVar.o -c protVar.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o pgSnp.o -c pgSnp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o alignInfo.o -c alignInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cddInfo.o -c cddInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o loweutils.o -c loweutils.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o cddDesc.o -c cddDesc.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o arCOGs.o -c arCOGs.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o arcogdesc.o -c arcogdesc.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized    -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o megablastInfo.o -c megablastInfo.c
ar rcus ../../lib/i686/jkhgap.a acemblyClass.o affyAllExonProbe.o affyAtlas.o affy10KDetails.o affy120KDetails.o affyOffset.o affyPairs.o agp.o agpFrag.o agpGap.o alignSeqSizes.o altGraph.o altGraphX.o ancientRref.o atomDb.o  axtInfo.o axtLib.o bactigPos.o bamFile.o baseMaskCommon.o bdgpExprLink.o bdgpGeneInfo.o bed.o bed5FloatScore.o bed5Pval.o bed6FloatScore.o bed12Source.o bed12wSeq.o bedCart.o bgiGeneInfo.o bgiGeneSnp.o bgiSnp.o bioImage.o blastTab.o blastzNet.o blatServers.o borf.o borkPseudoHom.o botDelay.o cart.o cartDb.o cdsEvidence.o cdsOrtho.o cdsPick.o cdsSpec.o ccdsInfo.o ccdsGeneMap.o celeraCoverage.o celeraDupPositive.o cgapSage/cgapSage.o cgapSage/cgapSageLib.o cgh.o chainCart.o chainDb.o chainLink.o chainNet.o chainNetDbLoad.o chicken13kInfo.o chromBins.o chr18deletions.o chromGraph.o chromGraphFactory.o chromInfo.o chromInserts.o chromKeeper.o clonePos.o codeBlast.o codeBlastScore.o cogs.o cogsxra.o columnInfo.o contigAcc.o coordConv.o cnpIafrate.o cnpIafrate2.o cnpLocke.o cnpRedon.o cnpSebat.o cnpSebat2.o cnpSharp2.o cnpSharpCutoff.o cnpSharpSample.o cnpSharp.o cpgIsland.o cpgIslandExt.o ctgPos.o ctgPos2.o customFactory.o customPp.o customTrack.o cutter.o cytoBand.o dbDb.o dbRIP.o dbSnpRs.o defaultDb.o delConrad2.o delHinds2.o dgv.o dless.o dnaMotifSql.o dnaProbe.o dv.o dvBed.o dvXref2.o easyGene.o ec.o ecCode.o ecAttribute.o ecAttributeCode.o encode/encodeErge.o encode/encodeErgeHssCellLines.o encode/encodeHapMapAlleleFreq.o encode/encodeIndels.o encode/encodePeak.o encode/encodeRegionInfo.o encode/encodeRegionInfoCustom.o encode/encodeRna.o encode/encodeStanfordPromoters.o encode/encodeStanfordPromotersAverage.o encode/pairedTagAlign.o encode/tagAlign.o ensFace.o ensInfo.o ensPhusionBlast.o ensXRefZfish.o est3.o estOrientInfo.o estPair.o exoFish.o expData.o expRecord.o exprBed.o fbTables.o featureBits.o findKGAlias.o findKGProtAlias.o fishClones.o flyBase2004Xref.o flyBaseSwissProt.o flyreg.o flyreg2.o gbExtFile.o gbWarn.o gbMiscDiff.o gbProtAnn.o gcPercent.o gbSeq.o genbank.o gencodeGeneClass.o gencodeIntron.o genMapDb.o geneBands.o geneCheck.o geneCheckDetails.o geneCheckWidget.o geneGraph.o genePred.o genePredReader.o geneSimilarities.o genoLay.o genomeRangeTreeFile.o genomicDups.o genomicSuperDups.o ggCluster.o ggDbIo.o ggDump.o ggGraph.o ggMrnaAli.o ggTypes.o glDbRep.o goa.o goaPart.o googleAnalytics.o growthCondition.o grp.o hapmapAllelesOrtho.o hapmapAllelesSummary.o hapmapPhaseIIISummary.o hapmapSnps.o hapmapSnpsCombined.o hCommon.o hCytoBand.o hdb.o hgColors.o hgConfig.o hgExp.o hgFind.o hgFindSpec.o hgFindSpecCustom.o hgGene.o hgMaf.o hgRelate.o hgSeq.o hgdpGeo.o hPrint.o hVarSubst.o hvGfx.o HInv.o hui.o humanParalog.o imageClone.o isochores.o ispyTables.o itemAttr.o itemConf.o jalview.o jaxOrtholog.o jaxQTL.o jaxQTL3.o jksql.o joiner.o jsHelper.o kg1ToKg2.o jgiGene.o kgAlias.o kgColor.o kgProtAlias.o kgXref.o knownInfo.o knownMore.o knownToSuper.o ld.o ld2.o lfs.o liftOver.o liftOverChain.o liftUp.o llaInfo.o lsSnpPdb.o lsSnpPdbChimera.o mafFrames.o mafGene.o mafSummary.o mammalPsg.o mapSts.o mcnBreakpoints.o metaChromGraph.o microarray.o minChromSize.o minGeneInfo.o mrnaMisMatch.o mouseOrtho.o mouseSyn.o mouseSynWhd.o mysqlTableStatus.o netAlign.o netCart.o nonCodingUi.o omimTitle.o ooUtils.o orthoAlleles.o pal.o pbStamp.o pcrResult.o pepPred.o plasEndPairs.o polyGenotype.o protFeat.o pscreen.o pseudoGeneLink.o pslReader.o pslWScore.o putaInfo.o qaSeq.o rangeTreeFile.o rankProp.o recombRate.o recombRateRat.o recombRateMouse.o refLink.o refSeqStatus.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o riken.o rhMapZfishInfo.o rikenBest.o rikenCluster.o rmskOut.o rnaFold.o rnaGene.o rnaGroup.o rnaHybridization.o rnaPLFold.o tRNAs.o gbRNAs.o snoRNAs.o lowelabPfamHit.o lowelabArkinOperonScore.o lowelabTIGROperonScore.o rnaSecStr.o tfbsConsFactors.o retroMrnaInfo.o roughAli.o transMapStuff.o transMapInfo.o transMapGene.o transMapSrc.o sage.o sageCounts.o sageExp.o sample.o sqlProg.o tfbsCons.o tfbsConsSites.o sanger22extra.o sangerGene.o sangerGeneToWBGeneID.o  sargassoSeaXra.o scopDes.o scoredRef.o sgdAbundance.o sgdClone.o sgdDescription.o sgdOther.o simpleNucDiff.o simpleRepeat.o snp.o snp125.o snp125CodingCoordless.o snpExceptions.o snpFasta.o snpMap.o snpTmp.o snpUi.o snp125Exceptions.o snp125Ui.o softPromoter.o softberryHom.o spDb.o splignAlign.o stanMad.o stsAlias.o stsInfo.o stsInfo2.o stsInfoMouse.o stsInfoMouseNew.o stsInfoRat.o stsMap.o stsMapMouse.o stsMapMouseNew.o stsMapRat.o stsMarker.o switchDbTss.o synMap.o synteny100000.o syntenyBerk.o syntenySanger.o tableDescriptions.o tableStatus.o targetDb.o tfbsConsMap.o taxonDivision.o taxonGeneticCode.o taxonName.o taxonNode.o taxonXref.o tigrCmrGene.o tigrOperon.o tilingPath.o traceInfo.o trackDb.o trackDbCustom.o trackLayout.o trackTable.o trackVersion.o trashDir.o transRegCode.o transRegCodeCondition.o transRegCodeProbe.o txCluster.o txCommon.o txEdgeBed.o txEdgeOrtho.o txGraph.o txInfo.o txRnaAccs.o validateGisaid.o vegaInfo.o vegaInfoZfish.o visiGene.o vntr.o wabAli.o web.o ncRna.o wgRna.o wigAsciiToBinary.o wigDataStream.o wiggle.o wiggleCart.o wiggleUtils.o wikiLink.o wikiTrack.o zdobnovSynt.o oreganno.o oregannoUi.o gvUi.o gv.o omicia.o protVar.o pgSnp.o alignInfo.o cddInfo.o loweutils.o cddDesc.o arCOGs.o arcogdesc.o megablastInfo.o
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/lib'
cd protein/lib && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/lib'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o pbUtil.o -c pbUtil.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o doStamps.o -c doStamps.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o doTracks.o -c doTracks.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o domains.o -c domains.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o spKgMap.o -c spKgMap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o doSam.o -c doSam.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o uniref.o -c uniref.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o unirefTbl.o -c unirefTbl.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -I/usr/include/mysql -o spMapper.o -c spMapper.c
ar rcus ../../../lib/i686/jkpbap.a pbUtil.o doStamps.o doTracks.o domains.o spKgMap.o doSam.o uniref.o unirefTbl.o spMapper.o
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/lib'
( cd affyTransciptome && echo affyTransciptome && make )
affyTransciptome
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/affyTransciptome'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit  -I../inc -I../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/affyPairsToSample affyPairsToSample.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit  -I../inc -I../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/normalizeSampleFile normalizeSampleFile.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit  -I../inc -I../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/avgTranscriptomeExps avgTranscriptomeExps.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit  -I../inc -I../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/maxTranscriptomeExps maxTranscriptomeExps.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit  -I../inc -I../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/scaleSampleFiles scaleSampleFiles.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit  -I../inc -I../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/averageZoomLevels averageZoomLevels.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit  -I../inc -I../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/groupSamples groupSamples.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/affyTransciptome'
( cd agpCloneCheck && echo agpCloneCheck && make )
agpCloneCheck
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpCloneCheck'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o agpCloneCheck.o -c agpCloneCheck.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpCloneCheck agpCloneCheck.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpCloneCheck'
( cd agpCloneList && echo agpCloneList && make )
agpCloneList
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpCloneList'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o agpCloneList.o -c agpCloneList.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpCloneList agpCloneList.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpCloneList'
( cd agpAllToFaFile && echo agpAllToFaFile && make )
agpAllToFaFile
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpAllToFaFile'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o agpAllToFaFile.o -c agpAllToFaFile.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpAllToFaFile agpAllToFaFile.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpAllToFaFile'
( cd agpToFa && echo agpToFa && make )
agpToFa
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpToFa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o agpToFa.o -c agpToFa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpToFa \
	agpToFa.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpToFa
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpToFa
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpToFa'
( cd agpToGl && echo agpToGl && make )
agpToGl
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpToGl'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o agpToGl.o -c agpToGl.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpToGl agpToGl.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpToGl
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpToGl
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpToGl'
( cd altSplice && echo altSplice && make )
altSplice
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/altSplice'
cd lib; make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/altSplice/lib'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o spliceGraph.o -c spliceGraph.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o exonGraph.o -c exonGraph.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o heap.o -c heap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o altSpliceSite.o -c altSpliceSite.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pfamDat.o -c pfamDat.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o affyProbe.o -c affyProbe.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o altProbe.o -c altProbe.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dMatrix.o -c dMatrix.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o splice.o -c splice.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mouseAPSetEventMap.o -c mouseAPSetEventMap.c
ar rcu ./i686/libSpliceGraph.a spliceGraph.o exonGraph.o heap.o altSpliceSite.o pfamDat.o affyProbe.o altProbe.o dMatrix.o splice.o mouseAPSetEventMap.o
ranlib ./i686/libSpliceGraph.a
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/altSplice/lib'
cd altSplice; make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/altSplice/altSplice'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/sequenceForBed sequenceForBed.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/altAnalysis altAnalysis.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/altSplice altSplice.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orthoSplice orthoSplice.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agxToBed agxToBed.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/altSummary altSummary.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedInGraph bedInGraph.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/consForBed consForBed.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/altPaths altPaths.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedToExons bedToExons.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/genePredToPsl genePredToPsl.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/altSplice/altSplice'
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/altSplice'
( cd autoDtd && echo autoDtd && make )
autoDtd
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/autoDtd'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o autoDtd.o -c autoDtd.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/autoDtd autoDtd.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/autoDtd
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/autoDtd
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/autoDtd'
( cd autoSql && echo autoSql && make )
autoSql
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/autoSql'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g   -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686    -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o autoSql.o -c autoSql.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o autoSql autoSql.o ../../lib/i686/jkweb.a  -lm 
rm -f /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/autoSql
cp -p autoSql /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/autoSql
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/autoSql'
( cd autoXml && echo autoXml && make )
autoXml
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/autoXml'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o autoXml.o -c autoXml.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/autoXml autoXml.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/autoXml'
( cd bedOrBlocks && echo bedOrBlocks && make )
bedOrBlocks
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedOrBlocks'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bedOrBlocks.o -c bedOrBlocks.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedOrBlocks bedOrBlocks.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedOrBlocks
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedOrBlocks
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedOrBlocks'
( cd bedIntersect && echo bedIntersect && make )
bedIntersect
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedIntersect'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bedIntersect.o -c bedIntersect.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedIntersect bedIntersect.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedIntersect'
( cd bedItemOverlapCount && echo bedItemOverlapCount && make )
bedItemOverlapCount
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedItemOverlapCount'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bedItemOverlapCount.o -c bedItemOverlapCount.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedItemOverlapCount bedItemOverlapCount.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedItemOverlapCount
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedItemOverlapCount
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedItemOverlapCount'
( cd bedSort && echo bedSort && make )
bedSort
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedSort'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bedSort.o -c bedSort.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedSort bedSort.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedSort'
( cd bedToGenePred && echo bedToGenePred && make )
bedToGenePred
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedToGenePred'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bedToGenePred.o -c bedToGenePred.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedToGenePred bedToGenePred.o ../../lib/i686/jkhgap.a ../../lib/i686/jkOwnLib.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm 
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedToGenePred'
( cd bedSplitOnChrom && echo bedSplitOnChrom && make )
bedSplitOnChrom
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedSplitOnChrom'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bedSplitOnChrom.o -c bedSplitOnChrom.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedSplitOnChrom bedSplitOnChrom.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedSplitOnChrom
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedSplitOnChrom
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedSplitOnChrom'
( cd blastToPsl && echo blastToPsl && make )
blastToPsl
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/blastToPsl'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o blastToPsl.o -c blastToPsl.c
i686-pc-linux-gnu-gcc -O2 -pipe -o blastToPsl blastToPsl.o  ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm 
cp -f blastToPsl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blastToPsl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blastToPsl
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blastToPsl
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslUniq.o -c pslUniq.c
i686-pc-linux-gnu-gcc -O2 -pipe pslUniq.o  ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm 
mv a.out pslUniq
cp -f pslUniq /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslUniq
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslUniq
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslUniq
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/blastToPsl'
( cd borfBig && echo borfBig && make )
borfBig
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/borfBig'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o borfBig.o -c borfBig.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/borfBig borfBig.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/borfBig
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/borfBig
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/borfBig'
( cd checkHgFindSpec && echo checkHgFindSpec && make )
checkHgFindSpec
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/checkHgFindSpec'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o checkHgFindSpec.o -c checkHgFindSpec.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o checkHgFindSpec checkHgFindSpec.o  ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
mv checkHgFindSpec /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkHgFindSpec
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/checkHgFindSpec'
( cd checkTableCoords && echo checkTableCoords && make )
checkTableCoords
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/checkTableCoords'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o checkTableCoords.o -c checkTableCoords.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o checkTableCoords checkTableCoords.o  ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  checkTableCoords
skipping strip checkTableCoords
mv checkTableCoords /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkTableCoords
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/checkTableCoords'
( cd ctgFaToFa && echo ctgFaToFa && make )
ctgFaToFa
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ctgFaToFa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ctgFaToFa.o -c ctgFaToFa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -O -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ctgFaToFa ctgFaToFa.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ctgFaToFa'
( cd ctgToChromFa && echo ctgToChromFa && make )
ctgToChromFa
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ctgToChromFa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ctgToChromFa.o -c ctgToChromFa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ctgToChromFa ctgToChromFa.o  ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ctgToChromFa
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ctgToChromFa
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ctgToChromFa'
( cd dbTrash && echo dbTrash && make )
dbTrash
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/dbTrash'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dbTrash.o -c dbTrash.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dbTrash dbTrash.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dbTrash
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dbTrash
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/dbTrash'
( cd estOrient && echo estOrient && make )
estOrient
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/estOrient'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g   -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686    -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o estOrient.o -c estOrient.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g   -o estOrient estOrient.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl  -lm
cp -f estOrient /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/estOrient
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/estOrient'
( cd embossToPsl && echo embossToPsl && make )
embossToPsl
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/embossToPsl'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o embossToPsl.o -c embossToPsl.c
i686-pc-linux-gnu-gcc -O2 -pipe -o embossToPsl embossToPsl.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
mkdir -p /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin
cp -f embossToPsl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/embossToPsl
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/embossToPsl
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/embossToPsl'
( cd encode/validateFiles && echo encode/validateFiles && make )
encode/validateFiles
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/encode/validateFiles'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o validateFiles.o -c validateFiles.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/validateFiles validateFiles.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/validateFiles
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/validateFiles
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/encode/validateFiles'
( cd fakeFinContigs && echo fakeFinContigs && make )
fakeFinContigs
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fakeFinContigs'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o fakeFinContigs.o -c fakeFinContigs.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fakeFinContigs fakeFinContigs.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fakeFinContigs'
( cd fakeOut && echo fakeOut && make )
fakeOut
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fakeOut'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o fakeOut.o -c fakeOut.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fakeOut fakeOut.o  ../../lib/i686/jkweb.a
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fakeOut'
( cd featureBits && echo featureBits && make )
featureBits
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/featureBits'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o featureBits.o -c featureBits.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/featureBits featureBits.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/featureBits
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/featureBits
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/featureBits'
( cd ffaToFa && echo ffaToFa && make )
ffaToFa
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ffaToFa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ffaToFa.o -c ffaToFa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -O -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ffaToFa ffaToFa.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ffaToFa'
( cd fishClones && echo fishClones && make )
fishClones
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fishClones'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o fishClones.o -c fishClones.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized fishClones.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm  
mv a.out fishClones
echo 'skipping strip'  fishClones
skipping strip fishClones
chmod a+rx fishClones
cp fishClones /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fishClones'
( cd fqToQa && echo fqToQa && make )
fqToQa
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fqToQa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o fqToQa.o -c fqToQa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fqToQa fqToQa.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fqToQa
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fqToQa
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fqToQa'
( cd fqToQac && echo fqToQac && make )
fqToQac
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fqToQac'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o fqToQac.o -c fqToQac.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fqToQac fqToQac.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fqToQac'
( cd fragPart && echo fragPart && make )
fragPart
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fragPart'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o fragPart.o -c fragPart.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fragPart fragPart.o  ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fragPart
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fragPart
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fragPart'
( cd gbGetEntries && echo gbGetEntries && make )
gbGetEntries
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gbGetEntries'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g   -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686    -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gbGetEntries.o -c gbGetEntries.c
i686-pc-linux-gnu-gcc -O2 -pipe -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gbGetEntries gbGetEntries.o  ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gbGetEntries'
( cd gbOneAcc && echo gbOneAcc && make )
gbOneAcc
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gbOneAcc'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gbOneAcc.o -c gbOneAcc.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gbOneAcc gbOneAcc.o  ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gbOneAcc'
( cd gbToFaRa && echo gbToFaRa && make )
gbToFaRa
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gbToFaRa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gbToFaRa.o -c gbToFaRa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -O -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gbToFaRa gbToFaRa.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gbToFaRa'
( cd geneBounds && echo geneBounds && make )
geneBounds
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds'
( cd assessLibs && echo assessLibs && make )
assessLibs
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/assessLibs'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o assessLibs.o -c assessLibs.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/assessLibs assessLibs.o  ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/assessLibs
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/assessLibs
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/assessLibs'
( cd averagExp && echo averagExp && make )
averagExp
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/averagExp'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o averagExp.o -c averagExp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/averagExp averagExp.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/averagExp
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/averagExp
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/averagExp'
( cd axtForEst && echo axtForEst && make )
axtForEst
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/axtForEst'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o axtForEst.o -c axtForEst.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtForEst axtForEst.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/axtForEst'
( cd bedCons && echo bedCons && make )
bedCons
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/bedCons'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bedCons.o -c bedCons.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedCons bedCons.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/bedCons'
( cd checkableBorf && echo checkableBorf && make )
checkableBorf
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/checkableBorf'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o checkableBorf.o -c checkableBorf.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkableBorf checkableBorf.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkableBorf
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkableBorf
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/checkableBorf'
( cd clusterGenes && echo clusterGenes && make )
clusterGenes
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/clusterGenes'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g   -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686    -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o clusterGenes.o -c clusterGenes.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g   -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/clusterGenes clusterGenes.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/clusterGenes
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/clusterGenes
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/clusterGenes'
( cd clusterPsl && echo clusterPsl && make )
clusterPsl
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/clusterPsl'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o clusterPsl.o -c clusterPsl.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/clusterPsl clusterPsl.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/clusterPsl
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/clusterPsl
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/clusterPsl'
( cd clusterRna && echo clusterRna && make )
clusterRna
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/clusterRna'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o clusterRna.o -c clusterRna.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/clusterRna clusterRna.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/clusterRna'
( cd dnaMotifFind && echo dnaMotifFind && make )
dnaMotifFind
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/dnaMotifFind'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dnaMotifFind.o -c dnaMotifFind.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dnaMotifFind dnaMotifFind.o  ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dnaMotifFind
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dnaMotifFind
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/dnaMotifFind'
( cd eisenInput && echo eisenInput && make )
eisenInput
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/eisenInput'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o eisenInput.o -c eisenInput.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/eisenInput eisenInput.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/eisenInput
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/eisenInput
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/eisenInput'
( cd emblMatrixToMotif && echo emblMatrixToMotif && make )
emblMatrixToMotif
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/emblMatrixToMotif'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o emblMatrixToMotif.o -c emblMatrixToMotif.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/emblMatrixToMotif emblMatrixToMotif.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/emblMatrixToMotif
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/emblMatrixToMotif
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/emblMatrixToMotif'
( cd estLibStats && echo estLibStats && make )
estLibStats
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/estLibStats'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o estLibStats.o -c estLibStats.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/estLibStats estLibStats.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/estLibStats
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/estLibStats
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/estLibStats'
( cd expToRna && echo expToRna && make )
expToRna
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/expToRna'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o expToRna.o -c expToRna.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/expToRna expToRna.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/expToRna
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/expToRna
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/expToRna'
( cd iriToControlTable && echo iriToControlTable && make )
iriToControlTable
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/iriToControlTable'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o iriToControlTable.o -c iriToControlTable.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ../lib/improbRunInfo.o -c ../lib/improbRunInfo.c
cd ../lib && make
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/lib'
echo all done
all done
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/lib'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/iriToControlTable iriToControlTable.o ../lib/improbRunInfo.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/iriToControlTable
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/iriToControlTable
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/iriToControlTable'
( cd iriToDnaMotif && echo iriToDnaMotif && make )
iriToDnaMotif
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/iriToDnaMotif'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o iriToDnaMotif.o -c iriToDnaMotif.c
cd ../lib && make
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/lib'
echo all done
all done
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/lib'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/iriToDnaMotif iriToDnaMotif.o ../lib/improbRunInfo.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/iriToDnaMotif
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/iriToDnaMotif
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/iriToDnaMotif'
( cd lib && echo lib && make )
lib
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/lib'
echo all done
all done
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/lib'
( cd liftPromoHits && echo liftPromoHits && make )
liftPromoHits
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/liftPromoHits'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o liftPromoHits.o -c liftPromoHits.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftPromoHits liftPromoHits.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftPromoHits
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftPromoHits
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/liftPromoHits'
( cd motifLogo && echo motifLogo && make )
motifLogo
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/motifLogo'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o motifLogo.o -c motifLogo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/motifLogo motifLogo.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/motifLogo
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/motifLogo
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/motifLogo'
( cd motifSig && echo motifSig && make )
motifSig
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/motifSig'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o motifSig.o -c motifSig.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/motifSig motifSig.o ../lib/improbRunInfo.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/motifSig
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/motifSig
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/motifSig'
( cd orf && echo orf && make )
orf
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/orf'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o orf.o -c orf.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orf orf.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orf
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orf
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/orf'
( cd orfStats && echo orfStats && make )
orfStats
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/orfStats'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o orfStats.o -c orfStats.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orfStats orfStats.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orfStats
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orfStats
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/orfStats'
( cd polyInfo && echo polyInfo && make )
polyInfo
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/polyInfo'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o polyInfo.o -c polyInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/polyInfo polyInfo.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm  /usr/lib/mysql/libmysqlclient.a -lz -lssl
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/polyInfo'
( cd promoSeqFromCluster && echo promoSeqFromCluster && make )
promoSeqFromCluster
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/promoSeqFromCluster'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o promoSeqFromCluster.o -c promoSeqFromCluster.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/promoSeqFromCluster promoSeqFromCluster.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/promoSeqFromCluster
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/promoSeqFromCluster
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/promoSeqFromCluster'
( cd raToCds && echo raToCds && make )
raToCds
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/raToCds'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o raToCds.o -c raToCds.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/raToCds raToCds.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/raToCds
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/raToCds
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/raToCds'
( cd twinOrf && echo twinOrf && make )
twinOrf
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrf'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o twinOrf.o -c twinOrf.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrf twinOrf.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrf
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrf
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrf'
( cd twinOrf2 && echo twinOrf2 && make )
twinOrf2
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrf2'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o twinOrf2.o -c twinOrf2.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrf2 twinOrf2.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrf2'
( cd twinOrf3 && echo twinOrf3 && make )
twinOrf3
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrf3'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o twinOrf3.o -c twinOrf3.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrf3 twinOrf3.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrf3
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrf3
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrf3'
( cd twinOrfStats && echo twinOrfStats && make )
twinOrfStats
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrfStats'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o twinOrfStats.o -c twinOrfStats.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats twinOrfStats.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrfStats'
( cd twinOrfStats2 && echo twinOrfStats2 && make )
twinOrfStats2
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrfStats2'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o twinOrfStats2.o -c twinOrfStats2.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats2 twinOrfStats2.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats2
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats2
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrfStats2'
( cd twinOrfStats3 && echo twinOrfStats3 && make )
twinOrfStats3
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrfStats3'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o twinOrfStats3.o -c twinOrfStats3.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats3 twinOrfStats3.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats3
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats3
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrfStats3'
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds'
( cd genePredCheck && echo genePredCheck && make )
genePredCheck
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredCheck'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g   -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686    -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o genePredCheck.o -c genePredCheck.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g   -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/genePredCheck genePredCheck.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredCheck'
( cd genePredHisto && echo genePredHisto && make )
genePredHisto
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredHisto'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g   -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686    -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o genePredHisto.o -c genePredHisto.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g   -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/genePredHisto genePredHisto.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredHisto'
( cd genePredSingleCover && echo genePredSingleCover && make )
genePredSingleCover
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredSingleCover'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g   -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686    -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o geneScore.o -c geneScore.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g   -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686    -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o genePredSingleCover.o -c genePredSingleCover.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g   -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/genePredSingleCover geneScore.o genePredSingleCover.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredSingleCover'
( cd genePredToGtf && echo genePredToGtf && make )
genePredToGtf
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredToGtf'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o genePredToGtf.o -c genePredToGtf.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/genePredToGtf genePredToGtf.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/genePredToGtf
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/genePredToGtf
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredToGtf'
( cd genePredToFakePsl && echo genePredToFakePsl && make )
genePredToFakePsl
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredToFakePsl'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o genePredToFakePsl.o -c genePredToFakePsl.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/genePredToFakePsl genePredToFakePsl.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredToFakePsl'
( cd genePredToMafFrames && echo genePredToMafFrames && make )
genePredToMafFrames
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredToMafFrames'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g   -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686    -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o orgGenes.o -c orgGenes.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g   -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686    -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mkMafFrames.o -c mkMafFrames.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g   -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686    -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o splitMultiMappings.o -c splitMultiMappings.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g   -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686    -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o finishMafFrames.o -c finishMafFrames.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g   -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686    -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o genePredToMafFrames.o -c genePredToMafFrames.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g   -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/genePredToMafFrames orgGenes.o mkMafFrames.o splitMultiMappings.o finishMafFrames.o genePredToMafFrames.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/genePredToMafFrames'
( cd getFeatDna && echo getFeatDna && make )
getFeatDna
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/getFeatDna'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o getFeatDna.o -c getFeatDna.c
i686-pc-linux-gnu-gcc -O2 -pipe -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/getFeatDna getFeatDna.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/getFeatDna'
( cd getRna && echo getRna && make )
getRna
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/getRna'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g   -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686    -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o getRna.o -c getRna.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g   -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/getRna getRna.o ../../lib/i686/jkhgap.a ../../lib/i686/jkOwnLib.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm 
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/getRna'
( cd getRnaPred && echo getRnaPred && make )
getRnaPred
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/getRnaPred'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o getRnaPred.o -c getRnaPred.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/getRnaPred getRnaPred.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/getRnaPred
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/getRnaPred
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/getRnaPred'
( cd gigAssembler/checkAgpAndFa && echo gigAssembler/checkAgpAndFa && make )
gigAssembler/checkAgpAndFa
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gigAssembler/checkAgpAndFa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o checkAgpAndFa.o -c checkAgpAndFa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkAgpAndFa checkAgpAndFa.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkAgpAndFa
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkAgpAndFa
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gigAssembler/checkAgpAndFa'
( cd gpStats && echo gpStats && make )
gpStats
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gpStats'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gpStats.o -c gpStats.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gpStats gpStats.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gpStats
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gpStats
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gpStats'
( cd gpToGtf && echo gpToGtf && make )
gpToGtf
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gpToGtf'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gpToGtf.o -c gpToGtf.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gpToGtf gpToGtf.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gpToGtf
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gpToGtf
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gpToGtf'
( cd gpcrParser && echo gpcrParser && make )
gpcrParser
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gpcrParser'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gpcrParser.o -c gpcrParser.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o gpcrParser gpcrParser.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm  
mv gpcrParser /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gpcrParser'
( cd gsBig && echo gsBig && make )
gsBig
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gsBig'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gsBig.o -c gsBig.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gsBig gsBig.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gsBig'
( cd hgTablesTest && echo hgTablesTest && make )
hgTablesTest
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgTablesTest'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgTablesTest.o -c hgTablesTest.c
i686-pc-linux-gnu-gcc -O2 -pipe  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgTablesTest hgTablesTest.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgTablesTest
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgTablesTest
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgTablesTest'
( cd hgChroms && echo hgChroms && make )
hgChroms
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgChroms'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g   -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686    -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgChroms.o -c hgChroms.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g   -o hgChroms hgChroms.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
mkdir -p /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin
cp -f hgChroms /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgChroms
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgChroms
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgChroms'
( cd hgGetAnn && echo hgGetAnn && make )
hgGetAnn
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgGetAnn'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgGetAnn.o -c hgGetAnn.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGetAnn hgGetAnn.o ../../lib/i686/jkhgap.a ../../lib/i686/jkOwnLib.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm 
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgGetAnn'
( cd hgKnownGeneList && echo hgKnownGeneList && make )
hgKnownGeneList
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgKnownGeneList'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgKnownGeneList.o -c hgKnownGeneList.c
i686-pc-linux-gnu-gcc -O2 -pipe -o hgKnownGeneList hgKnownGeneList.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
rm -f /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKnownGeneList
mv hgKnownGeneList /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKnownGeneList
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgKnownGeneList'
( cd hgSelect && echo hgSelect && make )
hgSelect
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgSelect'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g   -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686    -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgSelect.o -c hgSelect.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g   -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSelect hgSelect.o ../../lib/i686/jkhgap.a ../../lib/i686/jkOwnLib.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm 
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgSelect'
( cd hgSpeciesRna && echo hgSpeciesRna && make )
hgSpeciesRna
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgSpeciesRna'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgSpeciesRna.o -c hgSpeciesRna.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSpeciesRna hgSpeciesRna.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSpeciesRna
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSpeciesRna
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgSpeciesRna'
( cd hgsql && echo hgsql && make )
hgsql
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsql'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgsql.o -c hgsql.c
i686-pc-linux-gnu-gcc -O2 -pipe -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsql hgsql.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsql
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsql
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsql'
( cd hgsqlLocal && echo hgsqlLocal && make )
hgsqlLocal
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsqlLocal'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgsqlLocal.o -c hgsqlLocal.c
i686-pc-linux-gnu-gcc -O2 -pipe -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqlLocal hgsqlLocal.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqlLocal
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqlLocal
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsqlLocal'
( cd hgsqladmin && echo hgsqladmin && make )
hgsqladmin
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsqladmin'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgsqladmin.o -c hgsqladmin.c
i686-pc-linux-gnu-gcc -O2 -pipe -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqladmin hgsqladmin.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqladmin
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqladmin
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsqladmin'
( cd hgsqldump && echo hgsqldump && make )
hgsqldump
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsqldump'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgsqldump.o -c hgsqldump.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqldump hgsqldump.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqldump
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqldump
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsqldump'
( cd hgsqldumpLocal && echo hgsqldumpLocal && make )
hgsqldumpLocal
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsqldumpLocal'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgsqldumpLocal.o -c hgsqldumpLocal.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqldumpLocal hgsqldumpLocal.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqldumpLocal
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqldumpLocal
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsqldumpLocal'
( cd hgsqlimport && echo hgsqlimport && make )
hgsqlimport
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsqlimport'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgsqlimport.o -c hgsqlimport.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqlimport hgsqlimport.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqlimport
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgsqlimport
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/hgsqlimport'
( cd intronEnds && echo intronEnds && make )
intronEnds
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/intronEnds'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o intronEnds.o -c intronEnds.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/intronEnds intronEnds.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/intronEnds
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/intronEnds
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/intronEnds'
( cd lib && echo lib && make )
lib
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/lib'
make[1]: `../../lib/i686/jkhgap.a' is up to date.
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/lib'
( cd liftAcross && echo liftAcross && make )
liftAcross
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/liftAcross'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o liftAcross.o -c liftAcross.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftAcross liftAcross.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftAcross
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftAcross
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/liftAcross'
( cd liftAgp && echo liftAgp && make )
liftAgp
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/liftAgp'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -I../inc -I../../inc  -o liftAgp liftAgp.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm 
mv liftAgp /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/liftAgp'
( cd liftFrags && echo liftFrags && make )
liftFrags
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/liftFrags'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o liftFrags.o -c liftFrags.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftFrags liftFrags.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/liftFrags'
( cd liftOver && echo liftOver && make )
liftOver
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/liftOver'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o liftOver.o -c liftOver.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftOver liftOver.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftOver
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftOver
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o liftOverMerge.o -c liftOverMerge.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftOverMerge liftOverMerge.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftOverMerge
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftOverMerge
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/liftOver'
( cd liftUp && echo liftUp && make )
liftUp
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/liftUp'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o liftUp.o -c liftUp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftUp liftUp.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/liftUp'
( cd lfsOverlap && echo lfsOverlap && make )
lfsOverlap
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/lfsOverlap'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o lfsOverlap.o -c lfsOverlap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/lfsOverlap lfsOverlap.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/lfsOverlap'
( cd makeDb && echo makeDb && make )
makeDb
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb'
( cd hgAar && echo hgAar && make )
hgAar
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgAar'
cp -f aarToAxt /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/aarToAxt 
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgAar'
( cd hgAddLiftOverChain && echo hgAddLiftOverChain && make )
hgAddLiftOverChain
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgAddLiftOverChain'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgAddLiftOverChain.o -c hgAddLiftOverChain.c
i686-pc-linux-gnu-gcc -O2 -pipe -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgAddLiftOverChain hgAddLiftOverChain.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgAddLiftOverChain
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgAddLiftOverChain
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgAddLiftOverChain'
( cd hgBbiDbLink && echo hgBbiDbLink && make )
hgBbiDbLink
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgBbiDbLink'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgBbiDbLink.o -c hgBbiDbLink.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgBbiDbLink hgBbiDbLink.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgBbiDbLink
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgBbiDbLink
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgBbiDbLink'
( cd hgClonePos && echo hgClonePos && make )
hgClonePos
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgClonePos'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgClonePos.o -c hgClonePos.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gsSeqInfo.o -c gsSeqInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgClonePos hgClonePos.o gsSeqInfo.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgClonePos'
( cd hgCountAlign && echo hgCountAlign && make )
hgCountAlign
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgCountAlign'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -O -g -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o align.o -c align.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -O -g -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgCountAlign.o -c hgCountAlign.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -O -g -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o slidingWin.o -c slidingWin.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -O -g -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o winCounts.o -c winCounts.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgCountAlign align.o hgCountAlign.o slidingWin.o  winCounts.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgCountAlign'
( cd hgCtgPos && echo hgCtgPos && make )
hgCtgPos
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgCtgPos'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgCtgPos.o -c hgCtgPos.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o liftSpec.o -c liftSpec.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgCtgPos hgCtgPos.o liftSpec.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgCtgPos'
( cd hgDeleteChrom && echo hgDeleteChrom && make )
hgDeleteChrom
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgDeleteChrom'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgDeleteChrom.o -c hgDeleteChrom.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgDeleteChrom hgDeleteChrom.o  ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgDeleteChrom'
( cd hgExperiment && echo hgExperiment && make )
hgExperiment
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgExperiment'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgExperiment.o -c hgExperiment.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgExperiment hgExperiment.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgExperiment
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgExperiment
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgExperiment'
( cd hgExtFileCheck && echo hgExtFileCheck && make )
hgExtFileCheck
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgExtFileCheck'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgExtFileCheck.o -c hgExtFileCheck.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgExtFileCheck hgExtFileCheck.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgExtFileCheck'
( cd hgFakeAgp && echo hgFakeAgp && make )
hgFakeAgp
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgFakeAgp'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgFakeAgp.o -c hgFakeAgp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgFakeAgp hgFakeAgp.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgFakeAgp
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgFakeAgp
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgFakeAgp'
( cd hgFindSpec && echo hgFindSpec && make )
hgFindSpec
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgFindSpec'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgFindSpec.o -c hgFindSpec.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgFindSpec hgFindSpec.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgFindSpec
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgFindSpec
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgFindSpec'
( cd hgGcPercent && echo hgGcPercent && make )
hgGcPercent
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgGcPercent'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgGcPercent.o -c hgGcPercent.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGcPercent \
	hgGcPercent.o  ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGcPercent
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGcPercent
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgGcPercent'
( cd hgGeneBands && echo hgGeneBands && make )
hgGeneBands
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgGeneBands'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgGeneBands.o -c hgGeneBands.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGeneBands hgGeneBands.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGeneBands
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGeneBands
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgGeneBands'
( cd hgGenericMicroarray && echo hgGenericMicroarray && make )
hgGenericMicroarray
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgGenericMicroarray'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgGenericMicroarray.o -c hgGenericMicroarray.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGenericMicroarray hgGenericMicroarray.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGenericMicroarray
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGenericMicroarray
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgGenericMicroarray'
( cd hgGoldGapGl && echo hgGoldGapGl && make )
hgGoldGapGl
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgGoldGapGl'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgGoldGapGl.o -c hgGoldGapGl.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ntContig.o -c ntContig.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGoldGapGl \
	hgGoldGapGl.o ntContig.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgLoadGap.o -c hgLoadGap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadGap \
	hgLoadGap.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgGoldGapGl'
( cd hgKgGetText && echo hgKgGetText && make )
hgKgGetText
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgKgGetText'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgKgGetText.o -c hgKgGetText.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKgGetText hgKgGetText.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKgGetText
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKgGetText
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgKgGetText'
( cd hgKgMrna && echo hgKgMrna && make )
hgKgMrna
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgKgMrna'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgKgMrna.o -c hgKgMrna.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKgMrna hgKgMrna.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgKgMrna'
( cd hgKnownMore && echo hgKnownMore && make )
hgKnownMore
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgKnownMore'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgKnownMore.o -c hgKnownMore.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hugoMulti.o -c hugoMulti.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKnownMore hgKnownMore.o hugoMulti.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgKnownMore'
( cd hgKnownMore.oo21 && echo hgKnownMore.oo21 && make )
hgKnownMore.oo21
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgKnownMore.oo21'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgKnownMore.o -c hgKnownMore.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hugoMulti.o -c hugoMulti.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKnownMore hgKnownMore.o hugoMulti.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgKnownMore.oo21'
( cd hgLoadBed && echo hgLoadBed && make )
hgLoadBed
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadBed'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgLoadBed.o -c hgLoadBed.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadBed hgLoadBed.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadBed
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadBed
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadBed'
( cd hgLoadBlastTab && echo hgLoadBlastTab && make )
hgLoadBlastTab
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadBlastTab'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgLoadBlastTab.o -c hgLoadBlastTab.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadBlastTab hgLoadBlastTab.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadBlastTab
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadBlastTab
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadBlastTab'
( cd hgLoadChain && echo hgLoadChain && make )
hgLoadChain
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadChain'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgLoadChain.o -c hgLoadChain.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadChain \
	hgLoadChain.o  ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadChain
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadChain
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadChain'
( cd hgLoadChromGraph && echo hgLoadChromGraph && make )
hgLoadChromGraph
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadChromGraph'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgLoadChromGraph.o -c hgLoadChromGraph.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadChromGraph hgLoadChromGraph.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadChromGraph
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadChromGraph
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadChromGraph'
( cd hgLoadGenePred && echo hgLoadGenePred && make )
hgLoadGenePred
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadGenePred'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgLoadGenePred.o -c hgLoadGenePred.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadGenePred hgLoadGenePred.o  ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadGenePred'
( cd hgLoadItemAttr && echo hgLoadItemAttr && make )
hgLoadItemAttr
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadItemAttr'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgLoadItemAttr.o -c hgLoadItemAttr.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadItemAttr hgLoadItemAttr.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadItemAttr
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadItemAttr
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadItemAttr'
( cd hgLoadMaf && echo hgLoadMaf && make )
hgLoadMaf
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadMaf'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgLoadMaf.o -c hgLoadMaf.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadMaf hgLoadMaf.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadMaf
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadMaf
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgLoadMafSummary.o -c hgLoadMafSummary.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadMafSummary hgLoadMafSummary.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadMafSummary
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadMafSummary
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadMaf'
( cd hgLoadMafFrames && echo hgLoadMafFrames && make )
hgLoadMafFrames
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadMafFrames'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgLoadMafFrames.o -c hgLoadMafFrames.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadMafFrames hgLoadMafFrames.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadMafFrames'
( cd hgLoadNet && echo hgLoadNet && make )
hgLoadNet
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadNet'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgLoadNet.o -c hgLoadNet.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadNet hgLoadNet.o  ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadNet'
( cd hgLoadOut && echo hgLoadOut && make )
hgLoadOut
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadOut'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgLoadOut.o -c hgLoadOut.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadOut hgLoadOut.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadOut
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadOut
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadOut'
( cd hgLoadPsl && echo hgLoadPsl && make )
hgLoadPsl
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadPsl'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgLoadPsl.o -c hgLoadPsl.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadPsl hgLoadPsl.o  ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadPsl'
( cd hgLoadSeq && echo hgLoadSeq && make )
hgLoadSeq
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadSeq'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgLoadSeq.o -c hgLoadSeq.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadSeq hgLoadSeq.o  ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadSeq'
( cd hgLoadSample && echo hgLoadSample && make )
hgLoadSample
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadSample'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgLoadSample.o -c hgLoadSample.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadSample hgLoadSample.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadSample
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadSample
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadSample'
( cd hgLoadSqlTab && echo hgLoadSqlTab && make )
hgLoadSqlTab
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadSqlTab'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgLoadSqlTab.o -c hgLoadSqlTab.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadSqlTab hgLoadSqlTab.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadSqlTab
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadSqlTab
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadSqlTab'
( cd hgLoadWiggle && echo hgLoadWiggle && make )
hgLoadWiggle
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadWiggle'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgLoadWiggle.o -c hgLoadWiggle.c
i686-pc-linux-gnu-gcc -O2 -pipe -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadWiggle hgLoadWiggle.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadWiggle
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadWiggle
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgWiggle.o -c hgWiggle.c
i686-pc-linux-gnu-gcc -O2 -pipe -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgWiggle hgWiggle.o \
	../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgWiggle
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgWiggle
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o wigEncode.o -c wigEncode.c
i686-pc-linux-gnu-gcc -O2 -pipe -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/wigEncode wigEncode.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/wigEncode
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/wigEncode
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgLoadWiggle'
( cd hgMapMicroarray && echo hgMapMicroarray && make )
hgMapMicroarray
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgMapMicroarray'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgMapMicroarray.o -c hgMapMicroarray.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgMapMicroarray hgMapMicroarray.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgMapMicroarray
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgMapMicroarray
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgMapMicroarray'
( cd hgMedianMicroarray && echo hgMedianMicroarray && make )
hgMedianMicroarray
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgMedianMicroarray'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgMedianMicroarray.o -c hgMedianMicroarray.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgMedianMicroarray hgMedianMicroarray.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgMedianMicroarray
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgMedianMicroarray
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgMedianMicroarray'
( cd hgNibSeq && echo hgNibSeq && make )
hgNibSeq
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgNibSeq'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgNibSeq.o -c hgNibSeq.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgNibSeq hgNibSeq.o  ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgNibSeq'
( cd hgPepPred && echo hgPepPred && make )
hgPepPred
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgPepPred'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgPepPred.o -c hgPepPred.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgPepPred hgPepPred.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgPepPred'
( cd hgRatioMicroarray && echo hgRatioMicroarray && make )
hgRatioMicroarray
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgRatioMicroarray'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgRatioMicroarray.o -c hgRatioMicroarray.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgRatioMicroarray hgRatioMicroarray.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgRatioMicroarray
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgRatioMicroarray
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgRatioMicroarray'
( cd hgDropSplitTable && echo hgDropSplitTable && make )
hgDropSplitTable
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgDropSplitTable'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgDropSplitTable.o -c hgDropSplitTable.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgDropSplitTable hgDropSplitTable.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgDropSplitTable
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgDropSplitTable
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgDropSplitTable'
( cd hgRenameSplitTable && echo hgRenameSplitTable && make )
hgRenameSplitTable
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgRenameSplitTable'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgRenameSplitTable.o -c hgRenameSplitTable.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgRenameSplitTable hgRenameSplitTable.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgRenameSplitTable
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgRenameSplitTable
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgRenameSplitTable'
( cd hgSanger20 && echo hgSanger20 && make )
hgSanger20
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgSanger20'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgSanger20.o -c hgSanger20.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSanger20 hgSanger20.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSanger20
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSanger20
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgSanger20'
( cd hgSanger22 && echo hgSanger22 && make )
hgSanger22
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgSanger22'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgSanger22.o -c hgSanger22.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSanger22 hgSanger22.o  ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSanger22
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSanger22
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgSanger22'
( cd hgStanfordMicroarray && echo hgStanfordMicroarray && make )
hgStanfordMicroarray
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgStanfordMicroarray'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgStanfordMicroarray.o -c hgStanfordMicroarray.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgStanfordMicroarray hgStanfordMicroarray.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgStanfordMicroarray
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgStanfordMicroarray
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgStanfordMicroarray'
( cd hgStsAlias && echo hgStsAlias && make )
hgStsAlias
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgStsAlias'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgStsAlias.o -c hgStsAlias.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgStsAlias hgStsAlias.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgStsAlias'
( cd hgStsMarkers && echo hgStsMarkers && make )
hgStsMarkers
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgStsMarkers'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgStsMarkers.o -c hgStsMarkers.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgStsMarkers hgStsMarkers.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgStsMarkers'
( cd hgTomRough && echo hgTomRough && make )
hgTomRough
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgTomRough'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgTomRough.o -c hgTomRough.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o tomRough.o -c tomRough.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o hgTomRough hgTomRough.o tomRough.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgTomRough'
( cd hgTpf && echo hgTpf && make )
hgTpf
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgTpf'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgTpf.o -c hgTpf.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgTpf hgTpf.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgTpf
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgTpf
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgTpf'
( cd hgTraceInfo && echo hgTraceInfo && make )
hgTraceInfo
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgTraceInfo'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgTraceInfo.o -c hgTraceInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgTraceInfo hgTraceInfo.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgTraceInfo'
( cd hgTrackDb && echo hgTrackDb && make )
hgTrackDb
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgTrackDb'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgTrackDb.o -c hgTrackDb.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgTrackDb hgTrackDb.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgTrackDb'
( cd hgWaba && echo hgWaba && make )
hgWaba
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgWaba'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgWaba.o -c hgWaba.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgWaba hgWaba.o  ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgWaba'
( cd ldHgGene && echo ldHgGene && make )
ldHgGene
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/ldHgGene'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ldHgGene.o -c ldHgGene.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ldHgGene ldHgGene.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/ldHgGene'
( cd hgMrnaRefseq && echo hgMrnaRefseq && make )
hgMrnaRefseq
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgMrnaRefseq'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgMrnaRefseq.o -c hgMrnaRefseq.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized hgMrnaRefseq.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out hgMrnaRefseq
chmod a+rx hgMrnaRefseq
echo 'skipping strip'  hgMrnaRefseq
skipping strip hgMrnaRefseq
mv hgMrnaRefseq /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgMrnaRefseq
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/hgMrnaRefseq'
( cd schema && echo schema && make )
schema
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/schema'
joinerCheck
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/schema/joinerCheck'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o joinerCheck.o -c joinerCheck.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/joinerCheck joinerCheck.o  ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/schema/joinerCheck'
joinableFields
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/schema/joinableFields'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o joinableFields.o -c joinableFields.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/joinableFields joinableFields.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/joinableFields
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/joinableFields
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/schema/joinableFields'
makeTableDescriptions
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/schema/makeTableDescriptions'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o makeTableDescriptions.o -c makeTableDescriptions.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/makeTableDescriptions makeTableDescriptions.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/makeTableDescriptions
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/makeTableDescriptions
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/schema/makeTableDescriptions'
dbFindFieldsWith
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/schema/dbFindFieldsWith'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dbFindFieldsWith.o -c dbFindFieldsWith.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dbFindFieldsWith dbFindFieldsWith.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dbFindFieldsWith
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dbFindFieldsWith
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/schema/dbFindFieldsWith'
dbSnoop
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/schema/dbSnoop'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dbSnoop.o -c dbSnoop.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dbSnoop dbSnoop.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dbSnoop
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dbSnoop
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/schema/dbSnoop'
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/schema'
( cd tfbsConsLoc && echo tfbsConsLoc && make )
tfbsConsLoc
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/tfbsConsLoc'
i686-pc-linux-gnu-gcc -O2 -pipe ./tfbsConsLoc.c ./matt-maf.c ./util.c ./tfbsConsLocUtil.c ./seq.c -I -g -O -w -W -lm -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/tfbsConsLoc
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/tfbsConsLoc'
( cd tfbsConsSort && echo tfbsConsSort && make )
tfbsConsSort
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/tfbsConsSort'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o tfbsConsSort.o -c tfbsConsSort.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/tfbsConsSort tfbsConsSort.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/tfbsConsSort'
( cd outside && echo outside && make )
outside
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside'
( cd allenBrain/allenCollectSeq && echo allenBrain/allenCollectSeq && make )
allenBrain/allenCollectSeq
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/allenBrain/allenCollectSeq'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o allenCollectSeq.o -c allenCollectSeq.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/allenCollectSeq allenCollectSeq.o ../../../../../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/allenCollectSeq
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/allenCollectSeq
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/allenBrain/allenCollectSeq'
( cd exonerateGffDoctor && echo exonerateGffDoctor && make )
exonerateGffDoctor
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/exonerateGffDoctor'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o exonerateGffDoctor.o -c exonerateGffDoctor.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/exonerateGffDoctor exonerateGffDoctor.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/exonerateGffDoctor'
( cd hgAvidShortBed && echo hgAvidShortBed && make )
hgAvidShortBed
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgAvidShortBed'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgAvidShortBed.o -c hgAvidShortBed.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgAvidShortBed hgAvidShortBed.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgAvidShortBed
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgAvidShortBed
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgAvidShortBed'
( cd hgBioCyc && echo hgBioCyc && make )
hgBioCyc
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgBioCyc'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgBioCyc.o -c hgBioCyc.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized hgBioCyc.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out hgBioCyc
chmod a+rx hgBioCyc
echo 'skipping strip'  hgBioCyc
skipping strip hgBioCyc
mv hgBioCyc /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgBioCyc
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgBioCyc'
( cd hgCGAP && echo hgCGAP && make )
hgCGAP
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgCGAP'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgCGAP.o -c hgCGAP.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized hgCGAP.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out hgCGAP
chmod a+rx hgCGAP
echo 'skipping strip'  hgCGAP
skipping strip hgCGAP
mv hgCGAP /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgCGAP
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgCGAP'
( cd hgExonerate && echo hgExonerate && make )
hgExonerate
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgExonerate'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgExonerate.o -c hgExonerate.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgExonerate hgExonerate.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgExonerate'
( cd hgFiberglass && echo hgFiberglass && make )
hgFiberglass
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgFiberglass'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgFiberglass.o -c hgFiberglass.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgFiberglass hgFiberglass.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgFiberglass
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgFiberglass
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgFiberglass'
( cd hgFlyBase && echo hgFlyBase && make )
hgFlyBase
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgFlyBase'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgFlyBase.o -c hgFlyBase.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgFlyBase hgFlyBase.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgFlyBase'
( cd hgGnfMicroarray && echo hgGnfMicroarray && make )
hgGnfMicroarray
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgGnfMicroarray'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgGnfMicroarray.o -c hgGnfMicroarray.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGnfMicroarray hgGnfMicroarray.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGnfMicroarray
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGnfMicroarray
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgGnfMicroarray'
( cd hgJaxQtl && echo hgJaxQtl && make )
hgJaxQtl
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgJaxQtl'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgJaxQtl.o -c hgJaxQtl.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized hgJaxQtl.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out hgJaxQtl
echo 'skipping strip'  hgJaxQtl
skipping strip hgJaxQtl
chmod a+rx hgJaxQtl
mv hgJaxQtl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgJaxQtl'
( cd hgKegg && echo hgKegg && make )
hgKegg
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgKegg'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgKegg.o -c hgKegg.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized hgKegg.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out hgKegg
chmod a+rx hgKegg
echo 'skipping strip'  hgKegg
skipping strip hgKegg
mv hgKegg /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKegg
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgKegg'
( cd hgKegg2 && echo hgKegg2 && make )
hgKegg2
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgKegg2'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgKegg2.o -c hgKegg2.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized hgKegg2.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out hgKegg2
chmod a+rx hgKegg2
echo 'skipping strip'  hgKegg2
skipping strip hgKegg2
mv hgKegg2 /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKegg2
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgKegg2'
( cd hgKegg3 && echo hgKegg3 && make )
hgKegg3
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgKegg3'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgKegg3.o -c hgKegg3.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized hgKegg3.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out hgKegg3
chmod a+rx hgKegg3
echo 'skipping strip'  hgKegg3
skipping strip hgKegg3
mv hgKegg3 /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKegg3
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgKegg3'
( cd hgLoadEranModules && echo hgLoadEranModules && make )
hgLoadEranModules
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgLoadEranModules'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgLoadEranModules.o -c hgLoadEranModules.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o esMotif.o -c esMotif.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadEranModules hgLoadEranModules.o esMotif.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadEranModules
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadEranModules
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgLoadEranModules'
( cd hgLsSnpPdbLoad && echo hgLsSnpPdbLoad && make )
hgLsSnpPdbLoad
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgLsSnpPdbLoad'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgLsSnpPdbLoad.o -c hgLsSnpPdbLoad.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLsSnpPdbLoad hgLsSnpPdbLoad.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLsSnpPdbLoad
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLsSnpPdbLoad
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgLsSnpPdbLoad'
( cd hgPhMouse && echo hgPhMouse && make )
hgPhMouse
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgPhMouse'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgPhMouse.o -c hgPhMouse.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgPhMouse hgPhMouse.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgPhMouse
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgPhMouse
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgPhMouse'
( cd hgRnaGenes && echo hgRnaGenes && make )
hgRnaGenes
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgRnaGenes'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgRnaGenes.o -c hgRnaGenes.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgRnaGenes hgRnaGenes.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgRnaGenes'
( cd hgSoftPromoter && echo hgSoftPromoter && make )
hgSoftPromoter
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgSoftPromoter'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgSoftPromoter.o -c hgSoftPromoter.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSoftPromoter hgSoftPromoter.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSoftPromoter
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSoftPromoter
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgSoftPromoter'
( cd hgSoftberryHom && echo hgSoftberryHom && make )
hgSoftberryHom
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgSoftberryHom'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgSoftberryHom.o -c hgSoftberryHom.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSoftberryHom hgSoftberryHom.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgSoftberryHom'
( cd hgSuperfam && echo hgSuperfam && make )
hgSuperfam
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgSuperfam'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgSuperfam.o -c hgSuperfam.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized hgSuperfam.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out hgSuperfam
chmod a+rx hgSuperfam
echo 'skipping strip'  hgSuperfam
skipping strip hgSuperfam
mv hgSuperfam /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSuperfam
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/hgSuperfam'
( cd nibb/nibbImageProbes && echo nibb/nibbImageProbes && make )
nibb/nibbImageProbes
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/nibb/nibbImageProbes'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o nibbImageProbes.o -c nibbImageProbes.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibbImageProbes nibbImageProbes.o ../../../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibbImageProbes
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibbImageProbes
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/nibb/nibbImageProbes'
( cd nibb/nibbNameFix && echo nibb/nibbNameFix && make )
nibb/nibbNameFix
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/nibb/nibbNameFix'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o nibbNameFix.o -c nibbNameFix.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibbNameFix nibbNameFix.o ../../../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibbNameFix
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibbNameFix
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/nibb/nibbNameFix'
( cd nibb/nibbParseImageDir && echo nibb/nibbParseImageDir && make )
nibb/nibbParseImageDir
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/nibb/nibbParseImageDir'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o nibbParseImageDir.o -c nibbParseImageDir.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibbParseImageDir nibbParseImageDir.o ../../../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibbParseImageDir
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibbParseImageDir
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/nibb/nibbParseImageDir'
( cd nibb/nibbPrepImages && echo nibb/nibbPrepImages && make )
nibb/nibbPrepImages
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/nibb/nibbPrepImages'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o nibbPrepImages.o -c nibbPrepImages.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibbPrepImages nibbPrepImages.o ../../../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibbPrepImages
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibbPrepImages
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/nibb/nibbPrepImages'
( cd samHit && echo samHit && make )
samHit
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/samHit'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o samHit.o -c samHit.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized samHit.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out samHit
chmod a+rx samHit
mv samHit /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/samHit
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/samHit'
( cd sanger22gtf && echo sanger22gtf && make )
sanger22gtf
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/sanger22gtf'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o sanger22gtf.o -c sanger22gtf.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/sanger22gtf sanger22gtf.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/sanger22gtf
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/sanger22gtf
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/sanger22gtf'
( cd vegaBuildInfo && echo vegaBuildInfo && make )
vegaBuildInfo
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/vegaBuildInfo'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o vegaBuildInfo.o -c vegaBuildInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/vegaBuildInfo vegaBuildInfo.o ../../../../lib/i686/jkhgap.a ../../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/vegaBuildInfo'
( cd yeast/checkSgdSync && echo yeast/checkSgdSync && make )
yeast/checkSgdSync
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/yeast/checkSgdSync'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o checkSgdSync.o -c checkSgdSync.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkSgdSync checkSgdSync.o ../../../../../lib/i686/jkhgap.a ../../../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkSgdSync
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkSgdSync
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/yeast/checkSgdSync'
( cd yeast/fixHarbisonMotifs && echo yeast/fixHarbisonMotifs && make )
yeast/fixHarbisonMotifs
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/yeast/fixHarbisonMotifs'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o fixHarbisonMotifs.o -c fixHarbisonMotifs.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fixHarbisonMotifs fixHarbisonMotifs.o ../../../../../lib/i686/jkhgap.a ../../../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fixHarbisonMotifs
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fixHarbisonMotifs
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/yeast/fixHarbisonMotifs'
( cd yeast/hgSgdGff3 && echo yeast/hgSgdGff3 && make )
yeast/hgSgdGff3
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/yeast/hgSgdGff3'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgSgdGff3.o -c hgSgdGff3.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSgdGff3 hgSgdGff3.o ../../../../../lib/i686/jkhgap.a ../../../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSgdGff3
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSgdGff3
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/yeast/hgSgdGff3'
( cd yeast/hgSgdGfp && echo yeast/hgSgdGfp && make )
yeast/hgSgdGfp
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/yeast/hgSgdGfp'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgSgdGfp.o -c hgSgdGfp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSgdGfp hgSgdGfp.o ../../../../../lib/i686/jkhgap.a ../../../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSgdGfp
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSgdGfp
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/yeast/hgSgdGfp'
( cd yeast/hgSgdPep && echo yeast/hgSgdPep && make )
yeast/hgSgdPep
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/yeast/hgSgdPep'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgSgdPep.o -c hgSgdPep.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSgdPep hgSgdPep.o ../../../../../lib/i686/jkhgap.a ../../../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSgdPep
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgSgdPep
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/yeast/hgSgdPep'
( cd yeast/hgYeastRegCode && echo yeast/hgYeastRegCode && make )
yeast/hgYeastRegCode
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/yeast/hgYeastRegCode'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgYeastRegCode.o -c hgYeastRegCode.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgYeastRegCode hgYeastRegCode.o ../../../../../lib/i686/jkhgap.a ../../../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgYeastRegCode
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgYeastRegCode
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside/yeast/hgYeastRegCode'
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/outside'
( cd trackDbRaFormat && echo trackDbRaFormat && make )
trackDbRaFormat
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/trackDbRaFormat'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o trackDbRaFormat.o -c trackDbRaFormat.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/trackDbRaFormat trackDbRaFormat.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
#echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/trackDbRaFormat
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/trackDbRaFormat'
( cd trackDbPatch && echo trackDbPatch && make )
trackDbPatch
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/trackDbPatch'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o trackDbPatch.o -c trackDbPatch.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/trackDbPatch trackDbPatch.o ../../../lib/i686/jkweb.a  -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb/trackDbPatch'
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/makeDb'
( cd maskOutFa && echo maskOutFa && make )
maskOutFa
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/maskOutFa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o maskOutFa.o -c maskOutFa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/maskOutFa maskOutFa.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/maskOutFa
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/maskOutFa
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/maskOutFa'
( cd mdToNcbiLift && echo mdToNcbiLift && make )
mdToNcbiLift
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mdToNcbiLift'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mdToNcbiLift.o -c mdToNcbiLift.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mdToNcbiLift mdToNcbiLift.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mdToNcbiLift
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mdToNcbiLift
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mdToNcbiLift'
( cd mouseStuff && echo mouseStuff && make )
mouseStuff
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff'
( cd axtAndBed && echo axtAndBed && make )
axtAndBed
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtAndBed'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o axtAndBed.o -c axtAndBed.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtAndBed axtAndBed.o ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtAndBed
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtAndBed
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtAndBed'
( cd axtBest && echo axtBest && make )
axtBest
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtBest'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o axtBest.o -c axtBest.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtBest axtBest.o ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtBest
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtBest
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtBest'
( cd axtCalcMatrix && echo axtCalcMatrix && make )
axtCalcMatrix
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtCalcMatrix'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o axtCalcMatrix.o -c axtCalcMatrix.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtCalcMatrix axtCalcMatrix.o ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtCalcMatrix
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtCalcMatrix
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtCalcMatrix'
( cd axtChain && echo axtChain && make )
axtChain
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtChain'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o axtChain.o -c axtChain.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtChain axtChain.o ../../../lib/i686/jkweb.a   -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtChain
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtChain
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtChain'
( cd axtDropOverlap && echo axtDropOverlap && make )
axtDropOverlap
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtDropOverlap'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o axtDropOverlap.o -c axtDropOverlap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtDropOverlap axtDropOverlap.o  ../../../lib/i686/jkweb.a  -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtDropOverlap'
( cd axtDropSelf && echo axtDropSelf && make )
axtDropSelf
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtDropSelf'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o axtDropSelf.o -c axtDropSelf.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtDropSelf axtDropSelf.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtDropSelf
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtDropSelf
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtDropSelf'
( cd axtFilter && echo axtFilter && make )
axtFilter
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtFilter'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o axtFilter.o -c axtFilter.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtFilter axtFilter.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtFilter
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtFilter
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtFilter'
( cd axtIndex && echo axtIndex && make )
axtIndex
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtIndex'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o axtIndex.o -c axtIndex.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtIndex axtIndex.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtIndex
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtIndex
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtIndex'
( cd axtPretty && echo axtPretty && make )
axtPretty
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtPretty'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o axtPretty.o -c axtPretty.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtPretty axtPretty.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtPretty
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtPretty
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtPretty'
( cd axtQueryCount && echo axtQueryCount && make )
axtQueryCount
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtQueryCount'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o axtQueryCount.o -c axtQueryCount.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtQueryCount axtQueryCount.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtQueryCount
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtQueryCount
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtQueryCount'
( cd axtRecipBest && echo axtRecipBest && make )
axtRecipBest
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtRecipBest'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o axtRecipBest.o -c axtRecipBest.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtRecipBest axtRecipBest.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtRecipBest
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtRecipBest
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtRecipBest'
( cd axtRescore && echo axtRescore && make )
axtRescore
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtRescore'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o axtRescore.o -c axtRescore.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtRescore axtRescore.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtRescore
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtRescore
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtRescore'
( cd axtSort && echo axtSort && make )
axtSort
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtSort'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o axtSort.o -c axtSort.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtSort axtSort.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtSort
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtSort
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtSort'
( cd axtSplitByTarget && echo axtSplitByTarget && make )
axtSplitByTarget
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtSplitByTarget'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o axtSplitByTarget.o -c axtSplitByTarget.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtSplitByTarget axtSplitByTarget.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtSplitByTarget
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtSplitByTarget
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtSplitByTarget'
( cd axtSwap && echo axtSwap && make )
axtSwap
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtSwap'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o axtSwap.o -c axtSwap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtSwap axtSwap.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtSwap
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtSwap
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtSwap'
( cd axtToBed && echo axtToBed && make )
axtToBed
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtToBed'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o axtToBed.o -c axtToBed.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtToBed axtToBed.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtToBed
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtToBed
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtToBed'
( cd axtToChain && echo axtToChain && make )
axtToChain
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtToChain'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o axtToChain.o -c axtToChain.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtToChain axtToChain.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtToChain
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtToChain
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtToChain'
( cd axtToMaf && echo axtToMaf && make )
axtToMaf
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtToMaf'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o axtToMaf.o -c axtToMaf.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtToMaf axtToMaf.o ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtToMaf
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtToMaf
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtToMaf'
( cd axtToPsl && echo axtToPsl && make )
axtToPsl
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtToPsl'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o axtToPsl.o -c axtToPsl.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtToPsl axtToPsl.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtToPsl
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtToPsl
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/axtToPsl'
( cd bedCoverage && echo bedCoverage && make )
bedCoverage
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/bedCoverage'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bedCoverage.o -c bedCoverage.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedCoverage bedCoverage.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedCoverage
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedCoverage
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/bedCoverage'
( cd calcGap && echo calcGap && make )
calcGap
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/calcGap'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o calcGap.o -c calcGap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/calcGap calcGap.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/calcGap
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/calcGap
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/calcGap'
( cd chainAntiRepeat && echo chainAntiRepeat && make )
chainAntiRepeat
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainAntiRepeat'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chainAntiRepeat.o -c chainAntiRepeat.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainAntiRepeat chainAntiRepeat.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainAntiRepeat
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainAntiRepeat
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainAntiRepeat'
( cd chainDbToFile && echo chainDbToFile && make )
chainDbToFile
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainDbToFile'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chainDbToFile.o -c chainDbToFile.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainDbToFile chainDbToFile.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainDbToFile
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainDbToFile
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainDbToFile'
( cd chainFilter && echo chainFilter && make )
chainFilter
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainFilter'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chainFilter.o -c chainFilter.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainFilter chainFilter.o ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainFilter
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainFilter
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainFilter'
( cd chainMergeSort && echo chainMergeSort && make )
chainMergeSort
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainMergeSort'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chainMergeSort.o -c chainMergeSort.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainMergeSort chainMergeSort.o ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainMergeSort
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainMergeSort
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainMergeSort'
( cd chainNet && echo chainNet && make )
chainNet
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainNet'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chainNet.o -c chainNet.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainNet chainNet.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainNet'
( cd chainPreNet && echo chainPreNet && make )
chainPreNet
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainPreNet'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chainPreNet.o -c chainPreNet.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainPreNet chainPreNet.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainPreNet
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainPreNet
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainPreNet'
( cd chainSort && echo chainSort && make )
chainSort
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainSort'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chainSort.o -c chainSort.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainSort chainSort.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainSort
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainSort
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainSort'
( cd chainSplit && echo chainSplit && make )
chainSplit
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainSplit'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chainSplit.o -c chainSplit.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainSplit chainSplit.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainSplit
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainSplit
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainSplit'
( cd chainStats && echo chainStats && make )
chainStats
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainStats'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chainStats.o -c chainStats.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainStats chainStats.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainStats'
( cd chainStitchId && echo chainStitchId && make )
chainStitchId
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainStitchId'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chainStitchId.o -c chainStitchId.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainStitchId chainStitchId.o ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainStitchId
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainStitchId
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainStitchId'
( cd chainSwap && echo chainSwap && make )
chainSwap
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainSwap'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chainSwap.o -c chainSwap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainSwap chainSwap.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainSwap
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainSwap
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainSwap'
( cd chainToAxt && echo chainToAxt && make )
chainToAxt
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainToAxt'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chainToAxt.o -c chainToAxt.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainToAxt chainToAxt.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainToAxt
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainToAxt
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainToAxt'
( cd chainToPsl && echo chainToPsl && make )
chainToPsl
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainToPsl'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chainToPsl.o -c chainToPsl.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chainToPsl chainToPsl.o ../../../lib/i686/jkweb.a  -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/chainToPsl'
( cd gcForBed && echo gcForBed && make )
gcForBed
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/gcForBed'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gcForBed.o -c gcForBed.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gcForBed gcForBed.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gcForBed
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gcForBed
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/gcForBed'
( cd knownVsBlat && echo knownVsBlat && make )
knownVsBlat
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/knownVsBlat'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o knownVsBlat.o -c knownVsBlat.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o blatStats.o -c blatStats.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/knownVsBlat knownVsBlat.o blatStats.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/knownVsBlat
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/knownVsBlat
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o kvsSummary.o -c kvsSummary.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kvsSummary kvsSummary.o blatStats.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kvsSummary
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kvsSummary
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/knownVsBlat'
( cd lavToAxt && echo lavToAxt && make )
lavToAxt
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/lavToAxt'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o lavToAxt.o -c lavToAxt.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/lavToAxt lavToAxt.o ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/lavToAxt
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/lavToAxt
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/lavToAxt'
( cd lavToPsl && echo lavToPsl && make )
lavToPsl
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/lavToPsl'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o lavToPsl.o -c lavToPsl.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/lavToPsl lavToPsl.o ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/lavToPsl
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/lavToPsl
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/lavToPsl'
( cd libScan && echo libScan && make )
libScan
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/libScan'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o libScan.o -c libScan.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/libScan libScan.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/libScan'
( cd mafCoverage && echo mafCoverage && make )
mafCoverage
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/mafCoverage'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mafCoverage.o -c mafCoverage.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafCoverage mafCoverage.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafCoverage
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafCoverage
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/mafCoverage'
( cd mafFetch && echo mafFetch && make )
mafFetch
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/mafFetch'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mafFetch.o -c mafFetch.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafFetch mafFetch.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafFetch
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafFetch
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/mafFetch'
( cd mafRanges && echo mafRanges && make )
mafRanges
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/mafRanges'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mafRanges.o -c mafRanges.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafRanges mafRanges.o ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafRanges
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafRanges
cd tests && make
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/mafRanges/tests'
rm -rf output
mkdir -p output
/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafRanges input/chrM.maf hg17 output/hg17.bed
diff expected/hg17.bed output/hg17.bed
/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafRanges input/chrM.maf hg17 -notAllOGap output/hg17.nao.bed
diff expected/hg17.nao.bed output/hg17.nao.bed
/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafRanges input/chrM.maf hg17 -otherDb=galGal2 \
  output/hg17.galGal2.bed
diff expected/hg17.galGal2.bed output/hg17.galGal2.bed
/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafRanges input/chrM.maf hg17 -otherDb=galGal2 -notAllOGap \
  output/hg17.galGal2.nao.bed
diff expected/hg17.galGal2.nao.bed output/hg17.galGal2.nao.bed
/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafRanges input/chrM.maf hg17 -otherDb=danRer1,fr1 \
  output/hg17.danRer1.fr1.bed
diff expected/hg17.danRer1.fr1.bed output/hg17.danRer1.fr1.bed
/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafRanges input/chrM.maf galGal2 output/galGal2.bed
diff expected/galGal2.bed output/galGal2.bed
/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafRanges input/chrM.maf galGal2 -notAllOGap output/galGal2.nao.bed
diff expected/galGal2.nao.bed output/galGal2.nao.bed
/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafRanges input/chrM.maf galGal2 -otherDb=fr1 output/galGal2.fr1.bed
diff expected/galGal2.fr1.bed output/galGal2.fr1.bed
/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafRanges input/chrM.maf fr1 output/fr1.bed
diff expected/fr1.bed output/fr1.bed
/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafRanges input/chrM.maf canFam1 output/canFam1.bed
diff expected/canFam1.bed output/canFam1.bed
/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafRanges input/chrM.maf canFam1 -notAllOGap output/canFam1.nao.bed
diff expected/canFam1.nao.bed output/canFam1.nao.bed
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/mafRanges/tests'
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/mafRanges'
( cd mafToAxt && echo mafToAxt && make )
mafToAxt
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/mafToAxt'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mafToAxt.o -c mafToAxt.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafToAxt mafToAxt.o ../../../lib/i686/jkweb.a  -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/mafToAxt'
( cd mafToPsl && echo mafToPsl && make )
mafToPsl
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/mafToPsl'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mafToPsl.o -c mafToPsl.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafToPsl mafToPsl.o ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafToPsl
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafToPsl
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/mafToPsl'
( cd mousePoster && echo mousePoster && make )
mousePoster
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/mousePoster'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mousePoster.o -c mousePoster.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mousePoster mousePoster.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mousePoster
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mousePoster
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/mousePoster'
( cd netChainSubset && echo netChainSubset && make )
netChainSubset
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netChainSubset'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o netChainSubset.o -c netChainSubset.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netChainSubset netChainSubset.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netChainSubset
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netChainSubset
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netChainSubset'
( cd netClass && echo netClass && make )
netClass
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netClass'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o netClass.o -c netClass.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netClass netClass.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netClass
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netClass
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netClass'
( cd netFilter && echo netFilter && make )
netFilter
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netFilter'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o netFilter.o -c netFilter.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netFilter netFilter.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netFilter
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netFilter
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netFilter'
( cd netSplit && echo netSplit && make )
netSplit
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netSplit'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o netSplit.o -c netSplit.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netSplit netSplit.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netSplit
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netSplit
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netSplit'
( cd netStats && echo netStats && make )
netStats
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netStats'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o netStats.o -c netStats.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netStats netStats.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netStats
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netStats
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netStats'
( cd netSyntenic && echo netSyntenic && make )
netSyntenic
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netSyntenic'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o netSyntenic.o -c netSyntenic.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netSyntenic netSyntenic.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netSyntenic
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netSyntenic
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netSyntenic'
( cd netToAxt && echo netToAxt && make )
netToAxt
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netToAxt'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o netToAxt.o -c netToAxt.c
i686-pc-linux-gnu-gcc -O2 -pipe  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netToAxt netToAxt.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netToAxt
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netToAxt
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netToAxt'
( cd netToBed && echo netToBed && make )
netToBed
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netToBed'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o netToBed.o -c netToBed.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netToBed netToBed.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netToBed
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netToBed
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netToBed'
( cd netToBedWithId && echo netToBedWithId && make )
netToBedWithId
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netToBedWithId'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o netToBedWithId.o -c netToBedWithId.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netToBedWithId netToBedWithId.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netToBedWithId
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/netToBedWithId
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/netToBedWithId'
( cd orthologBySynteny && echo orthologBySynteny && make )
orthologBySynteny
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/orthologBySynteny'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o orthologBySynteny.o -c orthologBySynteny.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orthologBySynteny orthologBySynteny.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/orthologBySynteny'
( cd phToPsl && echo phToPsl && make )
phToPsl
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/phToPsl'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o phToPsl.o -c phToPsl.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/phToPsl phToPsl.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/phToPsl
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/phToPsl
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/phToPsl'
( cd pslMrnaCover && echo pslMrnaCover && make )
pslMrnaCover
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/pslMrnaCover'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslMrnaCover.o -c pslMrnaCover.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslMrnaCover pslMrnaCover.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslMrnaCover
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslMrnaCover
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/pslMrnaCover'
( cd regionPicker && echo regionPicker && make )
regionPicker
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/regionPicker'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o regionPicker.o -c regionPicker.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/regionPicker regionPicker.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/regionPicker
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/regionPicker
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/regionPicker'
( cd rikenBestInCluster && echo rikenBestInCluster && make )
rikenBestInCluster
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/rikenBestInCluster'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o rikenBestInCluster.o -c rikenBestInCluster.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/rikenBestInCluster rikenBestInCluster.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/rikenBestInCluster
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/rikenBestInCluster
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/rikenBestInCluster'
( cd simpleChain && echo simpleChain && make )
simpleChain
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/simpleChain'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o simpleChain.o -c simpleChain.c
i686-pc-linux-gnu-gcc -O2 -pipe -o simpleChain simpleChain.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
cp -f simpleChain /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/simpleChain'
( cd splitSim && echo splitSim && make )
splitSim
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/splitSim'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o splitSim.o -c splitSim.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/splitSim splitSim.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/splitSim
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/splitSim
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/splitSim'
( cd subsetAxt && echo subsetAxt && make )
subsetAxt
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/subsetAxt'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o subsetAxt.o -c subsetAxt.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/subsetAxt subsetAxt.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/subsetAxt
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/subsetAxt
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/subsetAxt'
( cd subsetTraces && echo subsetTraces && make )
subsetTraces
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/subsetTraces'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o subsetTraces.o -c subsetTraces.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/subsetTraces subsetTraces.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/subsetTraces'
( cd whyConserved && echo whyConserved && make )
whyConserved
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/whyConserved'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o whyConserved.o -c whyConserved.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/whyConserved whyConserved.o  ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/whyConserved
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/whyConserved
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o trackOverlap.o -c trackOverlap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/trackOverlap trackOverlap.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/trackOverlap
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/trackOverlap
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff/whyConserved'
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mouseStuff'
( cd mrnaToGene && echo mrnaToGene && make )
mrnaToGene
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mrnaToGene'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mrnaToGene.o -c mrnaToGene.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mrnaToGene mrnaToGene.o ../../lib/i686/jkhgap.a ../../lib/i686/jkOwnLib.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm 
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/mrnaToGene'
( cd near/hgCeOrfToGene && echo near/hgCeOrfToGene && make )
near/hgCeOrfToGene
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgCeOrfToGene'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgCeOrfToGene.o -c hgCeOrfToGene.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgCeOrfToGene hgCeOrfToGene.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgCeOrfToGene
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgCeOrfToGene
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgCeOrfToGene'
( cd near/hgClusterGenes && echo near/hgClusterGenes && make )
near/hgClusterGenes
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgClusterGenes'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgClusterGenes.o -c hgClusterGenes.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgClusterGenes hgClusterGenes.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm  /usr/lib/mysql/libmysqlclient.a -lz -lssl
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgClusterGenes'
( cd near/hgEmblProtLinks && echo near/hgEmblProtLinks && make )
near/hgEmblProtLinks
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgEmblProtLinks'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgEmblProtLinks.o -c hgEmblProtLinks.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgEmblProtLinks hgEmblProtLinks.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgEmblProtLinks
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgEmblProtLinks
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgEmblProtLinks'
( cd near/hgExpDistance && echo near/hgExpDistance && make )
near/hgExpDistance
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgExpDistance'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgExpDistance_fq.o -c hgExpDistance_fq.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgExpDistance hgExpDistance_fq.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl -lpthread
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgExpDistance
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgExpDistance
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgExpDistance'
( cd near/hgGoAssociation && echo near/hgGoAssociation && make )
near/hgGoAssociation
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgGoAssociation'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgGoAssociation.o -c hgGoAssociation.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGoAssociation hgGoAssociation.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGoAssociation
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgGoAssociation
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgGoAssociation'
( cd near/hgKnownToSuper && echo near/hgKnownToSuper && make )
near/hgKnownToSuper
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgKnownToSuper'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgKnownToSuper.o -c hgKnownToSuper.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKnownToSuper hgKnownToSuper.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKnownToSuper
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgKnownToSuper
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgKnownToSuper'
( cd near/hgMapToGene && echo near/hgMapToGene && make )
near/hgMapToGene
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgMapToGene'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgMapToGene.o -c hgMapToGene.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgMapToGene hgMapToGene.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgMapToGene
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgMapToGene
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgMapToGene'
( cd near/hgMapViaSwissProt && echo near/hgMapViaSwissProt && make )
near/hgMapViaSwissProt
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgMapViaSwissProt'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgMapViaSwissProt.o -c hgMapViaSwissProt.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgMapViaSwissProt hgMapViaSwissProt.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgMapViaSwissProt
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgMapViaSwissProt
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgMapViaSwissProt'
( cd near/hgProtIdToGenePred && echo near/hgProtIdToGenePred && make )
near/hgProtIdToGenePred
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgProtIdToGenePred'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgProtIdToGenePred.o -c hgProtIdToGenePred.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgProtIdToGenePred hgProtIdToGenePred.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgProtIdToGenePred
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgProtIdToGenePred
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgProtIdToGenePred'
( cd near/hgWormLinks && echo near/hgWormLinks && make )
near/hgWormLinks
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgWormLinks'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgWormLinks.o -c hgWormLinks.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgWormLinks hgWormLinks.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgWormLinks
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgWormLinks
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgWormLinks'
( cd near/pepPredToFa && echo near/pepPredToFa && make )
near/pepPredToFa
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/pepPredToFa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pepPredToFa.o -c pepPredToFa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pepPredToFa pepPredToFa.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pepPredToFa
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pepPredToFa
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/pepPredToFa'
( cd near/hgNearTest && echo near/hgNearTest && make )
near/hgNearTest
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgNearTest'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgNearTest.o -c hgNearTest.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgNearTest hgNearTest.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgNearTest'
( cd near/hgNetDist && echo near/hgNetDist && make )
near/hgNetDist
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgNetDist'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgNetDist.o -c hgNetDist.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgNetDist hgNetDist.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgNetDist
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgNetDist
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgLoadNetDist.o -c hgLoadNetDist.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadNetDist hgLoadNetDist.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadNetDist
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadNetDist
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hprdP2p.o -c hprdP2p.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hprdP2p hprdP2p.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hprdP2p
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hprdP2p
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/hgNetDist'
( cd near/knownToHprd && echo near/knownToHprd && make )
near/knownToHprd
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/knownToHprd'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o knownToHprd.o -c knownToHprd.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/knownToHprd knownToHprd.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/knownToHprd
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/knownToHprd
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/near/knownToHprd'
( cd nci60 && echo nci60 && make )
nci60
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/nci60'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized  -Wimplicit  -I../inc -I../../inc  -o findStanAlignments findStanAlignments.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
cp findStanAlignments /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized  -Wimplicit  -I../inc -I../../inc  -o stanToBedAndExpRecs stanToBedAndExpRecs.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
cp stanToBedAndExpRecs /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/nci60'
( cd orthoMap && echo orthoMap && make )
orthoMap
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/orthoMap'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o orthoEval.o -c orthoEval.c
i686-pc-linux-gnu-gcc -O2 -pipe  -I../inc  -I../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mgcFastaForBed mgcFastaForBed.c orthoEval.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm  -lm -lz
i686-pc-linux-gnu-gcc -O2 -pipe  -I../inc  -I../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agxToIntronBeds agxToIntronBeds.c orthoEval.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm  -lm -lz
i686-pc-linux-gnu-gcc -O2 -pipe  -I../inc  -I../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedToFrames bedToFrames.c orthoEval.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm  -lm -lz
i686-pc-linux-gnu-gcc -O2 -pipe  -I../inc  -I../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orthoMap orthoMap.c orthoEval.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm  -lm -lz
i686-pc-linux-gnu-gcc -O2 -pipe  -I../inc  -I../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orthoEvaluate orthoEvaluate.c orthoEval.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm  -lm -lz
i686-pc-linux-gnu-gcc -O2 -pipe  -I../inc  -I../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orthoPickIntron orthoPickIntron.c orthoEval.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm  -lm -lz
orthoPickIntron.c: In function ‘writeOutFrames’:
orthoPickIntron.c:409:2: warning: unknown conversion type character ‘,’ in format
orthoPickIntron.c:409:2: warning: unknown conversion type character ‘"’ in format
rm orthoEval.o
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/orthoMap'
( cd overlapSelect && echo overlapSelect && make )
overlapSelect
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/overlapSelect'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o rowReader.o -c rowReader.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chromAnn.o -c chromAnn.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chromAnnMap.o -c chromAnnMap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o selectTable.o -c selectTable.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o coordCols.o -c coordCols.c
echo '/* GENERATED CODE, DO NOT EDIT */' > usage.msg.tmp
/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/stringify usage.txt >> usage.msg.tmp
mv -f usage.msg.tmp usage.msg
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o overlapSelect.o -c overlapSelect.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o overlapSelect rowReader.o chromAnn.o chromAnnMap.o selectTable.o coordCols.o  overlapSelect.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl  -lm
cp -f overlapSelect /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/overlapSelect
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/overlapSelect'
( cd patCount && echo patCount && make )
patCount
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/patCount'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o patCount.o -c patCount.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/patCount patCount.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/patCount'
( cd perf && echo perf && make )
perf
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/perf'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgTracksRandom.o -c hgTracksRandom.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgTracksRandom hgTracksRandom.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/perf'
( cd protein && echo protein && make )
protein
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein'
(cd blastRecipBest && echo blastRecipBest && make)
blastRecipBest
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/blastRecipBest'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o blastRecipBest.o -c blastRecipBest.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blastRecipBest blastRecipBest.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blastRecipBest
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blastRecipBest
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/blastRecipBest'
(cd gadPos && echo gadPos && make)
gadPos
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/gadPos'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gadPos.o -c gadPos.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized gadPos.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out gadPos
chmod a+rx gadPos
mv gadPos /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gadPos
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/gadPos'
(cd hmmPfamToTab && echo hmmPfamToTab && make)
hmmPfamToTab
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/hmmPfamToTab'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hmmPfamToTab.o -c hmmPfamToTab.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hmmPfamToTab hmmPfamToTab.o ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hmmPfamToTab
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hmmPfamToTab
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/hmmPfamToTab'
(cd kgAliasM && echo kgAliasM && make)
kgAliasM
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgAliasM'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o kgAliasM.o -c kgAliasM.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized kgAliasM.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out kgAliasM
chmod a+rx kgAliasM
mv kgAliasM /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgAliasM'
(cd kgAliasP && echo kgAliasP && make)
kgAliasP
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgAliasP'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o kgAliasP.o -c kgAliasP.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized kgAliasP.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out kgAliasP
echo 'skipping strip'  kgAliasP
skipping strip kgAliasP
chmod a+rx kgAliasP
mv kgAliasP /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgAliasP'
(cd kgAliasKgXref && echo kgAliasKgXref && make)
kgAliasKgXref
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgAliasKgXref'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o kgAliasKgXref.o -c kgAliasKgXref.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized kgAliasKgXref.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out kgAliasKgXref
echo 'skipping strip'  kgAliasKgXref
skipping strip kgAliasKgXref
chmod a+rx kgAliasKgXref
mv kgAliasKgXref /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgAliasKgXref'
(cd kgAliasRefseq && echo kgAliasRefseq && make)
kgAliasRefseq
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgAliasRefseq'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o kgAliasRefseq.o -c kgAliasRefseq.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized kgAliasRefseq.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out kgAliasRefseq
echo 'skipping strip'  kgAliasRefseq
skipping strip kgAliasRefseq
chmod a+rx kgAliasRefseq
mv kgAliasRefseq /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgAliasRefseq'
(cd kgProtAlias && echo kgProtAlias && make)
kgProtAlias
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgProtAlias'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o kgProtAlias.o -c kgProtAlias.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized kgProtAlias.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out kgProtAlias
echo 'skipping strip'  kgProtAlias
skipping strip kgProtAlias
chmod a+rx kgProtAlias
mv kgProtAlias /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgProtAlias'
(cd kgProtAliasNCBI && echo kgProtAliasNCBI && make)
kgProtAliasNCBI
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgProtAliasNCBI'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o kgProtAliasNCBI.o -c kgProtAliasNCBI.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized kgProtAliasNCBI.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out kgProtAliasNCBI
echo 'skipping strip'  kgProtAliasNCBI
skipping strip kgProtAliasNCBI
chmod a+rx kgProtAliasNCBI
mv kgProtAliasNCBI /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgProtAliasNCBI'
(cd kgBestMrna2 && echo kgBestMrna2 && make)
kgBestMrna2
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgBestMrna2'
make kgPrepBestMrna2
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgBestMrna2'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o kgPrepBestMrna2.o -c kgPrepBestMrna2.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 \
	-o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgPrepBestMrna2 kgPrepBestMrna2.o ../../../lib/i686/jkOwnLib.a ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgPrepBestMrna2
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgPrepBestMrna2
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgBestMrna2'
make kgResultBestMrna2
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgBestMrna2'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o kgResultBestMrna2.o -c kgResultBestMrna2.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 \
	-o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgResultBestMrna2 kgResultBestMrna2.o ../../../lib/i686/jkOwnLib.a ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgResultBestMrna2
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgResultBestMrna2
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgBestMrna2'
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgBestMrna2'
(cd kgBestRef2 && echo kgBestRef2 && make)
kgBestRef2
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgBestRef2'
make kgPrepBestRef2
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgBestRef2'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o kgPrepBestRef2.o -c kgPrepBestRef2.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 \
	-o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgPrepBestRef2 kgPrepBestRef2.o ../../../lib/i686/jkOwnLib.a ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgPrepBestRef2
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgPrepBestRef2
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgBestRef2'
make kgResultBestRef2
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgBestRef2'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o kgResultBestRef2.o -c kgResultBestRef2.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 \
	-o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgResultBestRef2 kgResultBestRef2.o ../../../lib/i686/jkOwnLib.a ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgResultBestRef2
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgResultBestRef2
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgBestRef2'
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgBestRef2'
(cd kgCheck && echo kgCheck && make)
kgCheck
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgCheck'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o kgCheck.o -c kgCheck.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized kgCheck.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out kgCheck
chmod a+rx kgCheck
mv kgCheck /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgCheck
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgCheck'
(cd kgGetCds && echo kgGetCds && make)
kgGetCds
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgGetCds'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o kgGetCds.o -c kgGetCds.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized kgGetCds.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out kgGetCds
chmod a+rx kgGetCds
mv kgGetCds /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgGetCds
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgGetCds'
(cd kgGetPep && echo kgGetPep && make)
kgGetPep
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgGetPep'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o kgGetPep.o -c kgGetPep.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 \
	-o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgGetPep kgGetPep.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgGetPep
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgGetPep
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgGetPep'
(cd kgPepMrna && echo kgPepMrna && make)
kgPepMrna
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgPepMrna'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o kgPepMrna.o -c kgPepMrna.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgPepMrna kgPepMrna.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgPepMrna
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgPepMrna
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgPepMrna'
(cd kgPick && echo kgPick && make)
kgPick
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgPick'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o kgPick.o -c kgPick.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized kgPick.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out kgPick
chmod a+rx kgPick
mv kgPick /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgPick
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgPick'
(cd kgPutBack && echo kgPutBack && make)
kgPutBack
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgPutBack'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o kgPutBack.o -c kgPutBack.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgPutBack kgPutBack.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgPutBack
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/kgPutBack
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgPutBack'
(cd kgXref && echo kgXref && make)
kgXref
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgXref'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o kgXref.o -c kgXref.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized kgXref.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out kgXref
echo 'skipping strip'  kgXref
skipping strip kgXref
chmod a+rx kgXref
mv kgXref /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgXref'
(cd kgXref2 && echo kgXref2 && make)
kgXref2
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgXref2'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o kgXref2.o -c kgXref2.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized kgXref2.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out kgXref2
echo 'skipping strip'  kgXref2
skipping strip kgXref2
chmod a+rx kgXref2
mv kgXref2 /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/kgXref2'
(cd pbCalDist && echo pbCalDist && make)
pbCalDist
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbCalDist'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pbCalDist.o -c pbCalDist.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized pbCalDist.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out pbCalDist
chmod a+rx pbCalDist
mv pbCalDist /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pbCalDist
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbCalDist'
(cd pbCalDistGlobal && echo pbCalDistGlobal && make)
pbCalDistGlobal
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbCalDistGlobal'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pbCalDistGlobal.o -c pbCalDistGlobal.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized pbCalDistGlobal.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out pbCalDistGlobal
chmod a+rx pbCalDistGlobal
mv pbCalDistGlobal /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pbCalDistGlobal
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbCalDistGlobal'
(cd pbCalPi && echo pbCalPi && make)
pbCalPi
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbCalPi'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pbCalPi.o -c pbCalPi.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized pbCalPi.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out pbCalPi
chmod a+rx pbCalPi
mv pbCalPi /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pbCalPi
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbCalPi'
(cd pbCalResStd && echo pbCalResStd && make)
pbCalResStd
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbCalResStd'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pbCalResStd.o -c pbCalResStd.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized pbCalResStd.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out pbCalResStd
chmod a+rx pbCalResStd
mv pbCalResStd /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pbCalResStd
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbCalResStd'
(cd pbCalResStdGlobal && echo pbCalResStdGlobal && make)
pbCalResStdGlobal
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbCalResStdGlobal'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pbCalResStdGlobal.o -c pbCalResStdGlobal.c
pbCalResStdGlobal.c: In function ‘main’:
pbCalResStdGlobal.c:233:11: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result
pbCalResStdGlobal.c:237:11: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result
pbCalResStdGlobal.c:240:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
pbCalResStdGlobal.c:247:11: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result
pbCalResStdGlobal.c:258:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
pbCalResStdGlobal.c:262:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
pbCalResStdGlobal.c:268:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
pbCalResStdGlobal.c:272:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized pbCalResStdGlobal.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out pbCalResStdGlobal
chmod a+rx pbCalResStdGlobal
mv pbCalResStdGlobal /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pbCalResStdGlobal
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbCalResStdGlobal'
(cd pbHgnc && echo pbHgnc && make)
pbHgnc
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbHgnc'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pbHgnc.o -c pbHgnc.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized pbHgnc.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out pbHgnc
chmod a+rx pbHgnc
mv pbHgnc /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pbHgnc
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pbHgnc'
(cd pfamXref && echo pfamXref && make)
pfamXref
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pfamXref'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pfamXref.o -c pfamXref.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pfamXref pfamXref.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pfamXref
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pfamXref
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/pfamXref'
(cd rmKGPepMrna && echo rmKGPepMrna && make)
rmKGPepMrna
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/rmKGPepMrna'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o rmKGPepMrna.o -c rmKGPepMrna.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized rmKGPepMrna.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out rmKGPepMrna
chmod a+rx rmKGPepMrna
mv rmKGPepMrna /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/rmKGPepMrna'
(cd scopCollapse && echo scopCollapse && make)
scopCollapse
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/scopCollapse'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o scopCollapse.o -c scopCollapse.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/scopCollapse scopCollapse.o ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/scopCollapse
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/scopCollapse
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/scopCollapse'
(cd spOrganism && echo spOrganism && make)
spOrganism
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spOrganism'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o spOrganism.o -c spOrganism.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized spOrganism.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out spOrganism
chmod a+rx spOrganism
mv spOrganism /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spOrganism
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spOrganism'
(cd spTest && echo spTest && make)
spTest
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spTest'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o spTest.o -c spTest.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spTest spTest.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spTest
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spTest
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spTest'
(cd spToDb && echo spToDb && make)
spToDb
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spToDb'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o spToDb.o -c spToDb.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spToDb spToDb.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spToDb'
(cd spLoadPsiBlast && echo spLoadPsiBlast && make)
spLoadPsiBlast
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spLoadPsiBlast'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o spLoadPsiBlast.o -c spLoadPsiBlast.c
i686-pc-linux-gnu-gcc -O2 -pipe  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spLoadPsiBlast spLoadPsiBlast.o ../../../lib/i686/jkpbap.a ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spLoadPsiBlast'
(cd spLoadRankProp && echo spLoadRankProp && make)
spLoadRankProp
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spLoadRankProp'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o spLoadRankProp.o -c spLoadRankProp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o rankPropProt.o -c rankPropProt.c
i686-pc-linux-gnu-gcc -O2 -pipe  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spLoadRankProp spLoadRankProp.o rankPropProt.o ../../../lib/i686/jkpbap.a ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spLoadRankProp'
(cd spToProteinsVar && echo spToProteinsVar && make)
spToProteinsVar
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spToProteinsVar'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o spToProteinsVar.o -c spToProteinsVar.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized spToProteinsVar.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out spToProteinsVar
chmod a+rx spToProteinsVar
mv spToProteinsVar /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spToProteinsVar
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spToProteinsVar'
(cd spToSpXref2 && echo spToSpXref2 && make)
spToSpXref2
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spToSpXref2'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o spToSpXref2.o -c spToSpXref2.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized spToSpXref2.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out spToSpXref2
chmod a+rx spToSpXref2
mv spToSpXref2 /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spToSpXref2
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spToSpXref2'
(cd spXref3 && echo spXref3 && make)
spXref3
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spXref3'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o spXref3.o -c spXref3.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized spXref3.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out spXref3
chmod a+rx spXref3
mv spXref3 /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spXref3
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spXref3'
(cd spm3 && echo spm3 && make)
spm3
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spm3'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o spm3.o -c spm3.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized spm3.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out spm3
chmod a+rx spm3
mv spm3 /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spm3
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spm3'
(cd spm6 && echo spm6 && make)
spm6
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spm6'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o spm6.o -c spm6.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized spm6.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out spm6
chmod a+rx spm6
mv spm6 /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spm6
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spm6'
(cd spm7 && echo spm7 && make)
spm7
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spm7'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o spm7.o -c spm7.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized spm7.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out spm7
chmod a+rx spm7
mv spm7 /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spm7
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spm7'
(cd spToProteins && echo spToProteins && make)
spToProteins
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spToProteins'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o spToProteins.o -c spToProteins.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized spToProteins.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out spToProteins
chmod a+rx spToProteins
mv spToProteins /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spToProteins
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/spToProteins'
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein'
( cd pslCDnaFilter && echo pslCDnaFilter && make )
pslCDnaFilter
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslCDnaFilter'
echo '/* GENERATED CODE, DO NOT EDIT */' > usage.msg.tmp
/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/stringify usage.txt >> usage.msg.tmp
mv -f usage.msg.tmp usage.msg
echo '/* GENERATED CODE, DO NOT EDIT */' > algo.msg.tmp
/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/stringify algo.txt >> algo.msg.tmp
mv -f algo.msg.tmp algo.msg
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o cDnaAligns.o -c cDnaAligns.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o cDnaStats.o -c cDnaStats.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o cDnaReader.o -c cDnaReader.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o overlapFilter.o -c overlapFilter.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o polyASize.o -c polyASize.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hapRegions.o -c hapRegions.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslCDnaFilter.o -c pslCDnaFilter.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o pslCDnaFilter cDnaAligns.o cDnaStats.o cDnaReader.o overlapFilter.o polyASize.o hapRegions.o pslCDnaFilter.o ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl  -lm
cp -f pslCDnaFilter /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslCDnaFilter
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslCDnaFilter'
( cd pslCat && echo pslCat && make )
pslCat
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslCat'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslCat.o -c pslCat.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslCat pslCat.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslCat'
( cd pslCheck && echo pslCheck && make )
pslCheck
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslCheck'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslCheck.o -c pslCheck.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslCheck pslCheck.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslCheck'
( cd pslCoverage && echo pslCoverage && make )
pslCoverage
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslCoverage'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslCoverage.o -c pslCoverage.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslCoverage pslCoverage.o  ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslCoverage'
( cd pslDiff && echo pslDiff && make )
pslDiff
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslDiff'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslSets.o -c pslSets.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslDiff.o -c pslDiff.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o pslDiff pslSets.o pslDiff.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl  -lm
cp -f pslDiff /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslDiff
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslDiff'
( cd pslDropOverlap && echo pslDropOverlap && make )
pslDropOverlap
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslDropOverlap'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslDropOverlap.o -c pslDropOverlap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslDropOverlap pslDropOverlap.o  ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslDropOverlap'
( cd pslFilter && echo pslFilter && make )
pslFilter
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslFilter'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslFilter.o -c pslFilter.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslFilter pslFilter.o  ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslFilter'
( cd pslFilterPrimers && echo pslFilterPrimers && make )
pslFilterPrimers
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslFilterPrimers'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslFilterPrimers.o -c pslFilterPrimers.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized pslFilterPrimers.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm  
mv a.out pslFilterPrimers
chmod a+rx pslFilterPrimers
cp -f pslFilterPrimers /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslFilterPrimers
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslFilterPrimers
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslFilterPrimers
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslFilterPrimers'
( cd pslGlue && echo pslGlue && make )
pslGlue
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslGlue'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslGlue.o -c pslGlue.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslGlue pslGlue.o  ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslGlue'
( cd pslHisto && echo pslHisto && make )
pslHisto
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslHisto'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslHisto.o -c pslHisto.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslHisto pslHisto.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslHisto'
( cd pslHitPercent && echo pslHitPercent && make )
pslHitPercent
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslHitPercent'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslHitPercent.o -c pslHitPercent.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslHitPercent pslHitPercent.o  ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslHitPercent'
( cd pslIntronsOnly && echo pslIntronsOnly && make )
pslIntronsOnly
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslIntronsOnly'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslIntronsOnly.o -c pslIntronsOnly.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslIntronsOnly pslIntronsOnly.o  ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslIntronsOnly'
( cd pslMap && echo pslMap && make )
pslMap
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslMap'
echo '/* GENERATED CODE, DO NOT EDIT */' > usage.msg.tmp
/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/stringify usage.txt >> usage.msg.tmp
mv -f usage.msg.tmp usage.msg
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslMap.o -c pslMap.c
i686-pc-linux-gnu-gcc -O2 -pipe  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -O -g -o pslMap pslMap.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a -lm 
mkdir -p /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin
cp -f pslMap /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslMap
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslMap
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslMap'
( cd pslPartition && echo pslPartition && make )
pslPartition
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslPartition'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslPartition.o -c pslPartition.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o pslPartition pslPartition.o ../../lib/i686/jkweb.a  -lm
cp -f pslPartition /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslPartition
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslPartition'
( cd pslPairs && echo pslPairs && make )
pslPairs
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslPairs'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslPairs.o -c pslPairs.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized pslPairs.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm  
mv a.out pslPairs
echo 'skipping strip'  pslPairs
skipping strip pslPairs
chmod a+rx pslPairs
cp pslPairs /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslPairs'
( cd pslPretty && echo pslPretty && make )
pslPretty
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslPretty'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslPretty pslPretty.o ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslPretty'
( cd pslQuickFilter && echo pslQuickFilter && make )
pslQuickFilter
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslQuickFilter'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslQuickFilter.o -c pslQuickFilter.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized pslQuickFilter.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm  
mv a.out pslQuickFilter
echo 'skipping strip'  pslQuickFilter
skipping strip pslQuickFilter
chmod a+rx pslQuickFilter
cp pslQuickFilter /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslQuickFilter'
( cd pslRecalcMatch && echo pslRecalcMatch && make )
pslRecalcMatch
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslRecalcMatch'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslRecalcMatch.o -c pslRecalcMatch.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslRecalcMatch pslRecalcMatch.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslRecalcMatch
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslRecalcMatch
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslRecalcMatch'
( cd pslReps && echo pslReps && make )
pslReps
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslReps'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslReps pslReps.o  ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslReps'
( cd pslSelect && echo pslSelect && make )
pslSelect
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslSelect'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslSelect.o -c pslSelect.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslSelect pslSelect.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslSelect'
( cd pslSimp && echo pslSimp && make )
pslSimp
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslSimp'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslSimp.o -c pslSimp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslSimp pslSimp.o  ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslSimp'
( cd pslSort && echo pslSort && make )
pslSort
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslSort'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslSort pslSort.o ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslSort'
( cd pslSortAcc && echo pslSortAcc && make )
pslSortAcc
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslSortAcc'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslSortAcc.o -c pslSortAcc.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslSortAcc pslSortAcc.o ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslSortAcc'
( cd pslSplitOnTarget && echo pslSplitOnTarget && make )
pslSplitOnTarget
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslSplitOnTarget'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslSplitOnTarget.o -c pslSplitOnTarget.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslSplitOnTarget pslSplitOnTarget.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslSplitOnTarget
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslSplitOnTarget
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslSplitOnTarget'
( cd pslStats && echo pslStats && make )
pslStats
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslStats'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslStats.o -c pslStats.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslStats pslStats.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslStats'
( cd pslSwap && echo pslSwap && make )
pslSwap
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslSwap'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslSwap.o -c pslSwap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o pslSwap pslSwap.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a /usr/lib/mysql/libmysqlclient.a -lz -lssl  -lm
cp -f pslSwap /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslSwap
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslSwap
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslSwap
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslSwap'
( cd pslToBed && echo pslToBed && make )
pslToBed
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslToBed'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit  -I../inc -I../../inc  -o pslToBed pslToBed.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
mv pslToBed /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslToBed'
( cd pslUnpile && echo pslUnpile && make )
pslUnpile
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslUnpile'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslUnpile.o -c pslUnpile.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslUnpile pslUnpile.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslUnpile'
( cd pslxToFa && echo pslxToFa && make )
pslxToFa
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslxToFa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslxToFa.o -c pslxToFa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslxToFa pslxToFa.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/pslxToFa'
( cd qa && echo qa && make )
qa
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/qa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/apacheMonitor apacheMonitor.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkCardinality checkCardinality.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/countNib countNib.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dumpNib dumpNib.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gbSeqCheck gbSeqCheck.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/reviewIndexes reviewIndexes.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/seqCheck seqCheck.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/getChroms getChroms.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkChain checkChain.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/testSearch testSearch.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/timePosTable timePosTable.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/qa'
( cd qaToQac && echo qaToQac && make )
qaToQac
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/qaToQac'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o qaToQac.o -c qaToQac.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -O -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/qaToQac qaToQac.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/qaToQac'
( cd qacAgpLift && echo qacAgpLift && make )
qacAgpLift
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/qacAgpLift'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o qacAgpLift.o -c qacAgpLift.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -O -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/qacAgpLift qacAgpLift.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/qacAgpLift
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/qacAgpLift
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/qacAgpLift'
( cd qacToQa && echo qacToQa && make )
qacToQa
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/qacToQa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o qacToQa.o -c qacToQa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -O -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/qacToQa qacToQa.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/qacToQa'
( cd qacToWig && echo qacToWig && make )
qacToWig
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/qacToWig'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o qacToWig.o -c qacToWig.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -O -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/qacToWig qacToWig.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/qacToWig'
( cd ratStuff && echo ratStuff && make )
ratStuff
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff'
mafAddIRows
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafAddIRows'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -ggdb -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mafAddIRows.o -c mafAddIRows.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -ggdb -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafAddIRows mafAddIRows.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafAddIRows'
mafAddQRows
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafAddQRows'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mafAddQRows.o -c mafAddQRows.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafAddQRows mafAddQRows.o ../../../lib/i686/jkhgap.a  ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafAddQRows
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafAddQRows
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafAddQRows'
mafFilter
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafFilter'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mafFilter.o -c mafFilter.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafFilter mafFilter.o ../../../lib/i686/jkweb.a  -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafFilter'
mafFrag
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafFrag'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mafFrag.o -c mafFrag.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafFrag mafFrag.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafFrag
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafFrag
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafFrag'
mafFrags
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafFrags'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mafFrags.o -c mafFrags.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafFrags mafFrags.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafFrags
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafFrags
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafFrags'
mafGene
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafGene'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -ggdb -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mafGene.o -c mafGene.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafGene mafGene.o ../../../lib/i686/jkhgap.a   ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafGene'
mafMeFirst
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafMeFirst'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mafMeFirst.o -c mafMeFirst.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafMeFirst mafMeFirst.o ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafMeFirst
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafMeFirst
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafMeFirst'
mafSpeciesList
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafSpeciesList'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mafSpeciesList.o -c mafSpeciesList.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafSpeciesList mafSpeciesList.o ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafSpeciesList
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafSpeciesList
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafSpeciesList'
mafSpeciesSubset
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafSpeciesSubset'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mafSpeciesSubset.o -c mafSpeciesSubset.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafSpeciesSubset mafSpeciesSubset.o ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafSpeciesSubset
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafSpeciesSubset
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafSpeciesSubset'
mafSplit
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafSplit'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mafSplit.o -c mafSplit.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafSplit mafSplit.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafSplit
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafSplit
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafSplit'
mafSplitPos
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafSplitPos'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mafSplitPos.o -c mafSplitPos.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafSplitPos mafSplitPos.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafSplitPos
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafSplitPos
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafSplitPos'
mafsInRegion
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafsInRegion'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mafsInRegion.o -c mafsInRegion.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafsInRegion mafsInRegion.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafsInRegion
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafsInRegion
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafsInRegion'
mafOrder
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafOrder'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -ggdb -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mafOrder.o -c mafOrder.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -ggdb -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mafOrder mafOrder.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/mafOrder'
stageMultiz
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/stageMultiz'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o stageMultiz.o -c stageMultiz.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/stageMultiz stageMultiz.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff/stageMultiz'
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ratStuff'
( cd relPairs && echo relPairs && make )
relPairs
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/relPairs'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o relPairs.o -c relPairs.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/relPairs relPairs.o  ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/relPairs'
( cd recycleDb && echo recycleDb && make )
recycleDb
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/recycleDb'
cd bedUp && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/recycleDb/bedUp'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bedUp.o -c bedUp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedUp bedUp.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/recycleDb/bedUp'
cd bedDown && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/recycleDb/bedDown'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bedDown.o -c bedDown.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedDown bedDown.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/recycleDb/bedDown'
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/recycleDb'
( cd reviewSanity && echo reviewSanity && make )
reviewSanity
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/reviewSanity'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o reviewSanity.o -c reviewSanity.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/reviewSanity reviewSanity.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/reviewSanity'
( cd rnaStructure && echo rnaStructure && make )
rnaStructure
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/rnaStructure'
hgLoadRnaFold
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/rnaStructure/hgLoadRnaFold'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hgLoadRnaFold.o -c hgLoadRnaFold.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadRnaFold hgLoadRnaFold.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadRnaFold
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hgLoadRnaFold
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/rnaStructure/hgLoadRnaFold'
rnaFoldBig
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/rnaStructure/rnaFoldBig'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o rnaFoldBig.o -c rnaFoldBig.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/rnaFoldBig rnaFoldBig.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/rnaFoldBig
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/rnaFoldBig
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/rnaStructure/rnaFoldBig'
utrFa
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/rnaStructure/utrFa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o utrFa.o -c utrFa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/utrFa utrFa.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/utrFa
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/utrFa
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/rnaStructure/utrFa'
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/rnaStructure'
( cd sage && echo sage && make )
sage
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/sage'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized  -Wimplicit  -I../inc -I../../inc  -o addAveMedScoreToPsls addAveMedScoreToPsls.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
cp addAveMedScoreToPsls /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized  -Wimplicit  -I../inc -I../../inc  -o createSageSummary createSageSummary.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
cp createSageSummary /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/sage'
( cd scanRa && echo scanRa && make )
scanRa
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/scanRa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o scanRa.o -c scanRa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/scanRa scanRa.o  ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/scanRa'
( cd semiNorm && echo semiNorm && make )
semiNorm
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/semiNorm'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o semiNorm.o -c semiNorm.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/semiNorm semiNorm.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/semiNorm
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/semiNorm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/semiNorm'
( cd sim4big && echo sim4big && make )
sim4big
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/sim4big'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o sim4big.o -c sim4big.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/sim4big sim4big.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/sim4big
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/sim4big
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/sim4big'
( cd snpException && echo snpException && make )
snpException
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/snpException'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o snpException.o -c snpException.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc snpException.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
mv a.out /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/snpException
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/snpException'
( cd snp && echo snp && make )
snp
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/snp'
snpLoad
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/snp/snpLoad'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o snpNcbiToUcsc.o -c snpNcbiToUcsc.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/snpNcbiToUcsc snpNcbiToUcsc.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/snpNcbiToUcsc
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/snpNcbiToUcsc
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hapmapPhaseIIISummary.o -c hapmapPhaseIIISummary.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hapmapPhaseIIISummary hapmapPhaseIIISummary.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hapmapPhaseIIISummary
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/hapmapPhaseIIISummary
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/snp/snpLoad'
snpMask
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/snp/snpMask'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o snpMaskSingle.o -c snpMaskSingle.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/snpMaskSingle snpMaskSingle.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/snpMaskSingle
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/snpMaskSingle
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o snpMaskAddInsertions.o -c snpMaskAddInsertions.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/snpMaskAddInsertions snpMaskAddInsertions.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/snpMaskAddInsertions
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/snpMaskAddInsertions
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o snpMaskCutDeletions.o -c snpMaskCutDeletions.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/snpMaskCutDeletions snpMaskCutDeletions.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/snpMaskCutDeletions
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/snpMaskCutDeletions
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/snp/snpMask'
snpValid
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/snp/snpValid'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o snpValid.o -c snpValid.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o snpValid snpValid.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  snpValid
skipping strip snpValid
cp snpValid /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/snpValid 
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/snp/snpValid'
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/snp'
( cd spideyToPsl && echo spideyToPsl && make )
spideyToPsl
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/spideyToPsl'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o spideyToPsl.o -c spideyToPsl.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o spideyToPsl spideyToPsl.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
mkdir -p /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin
cp -f spideyToPsl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spideyToPsl
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spideyToPsl
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/spideyToPsl'
( cd splitFa && echo splitFa && make )
splitFa
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/splitFa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o splitFa.o -c splitFa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/splitFa splitFa.o  ../../lib/i686/jkweb.a
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/splitFa'
( cd splitFaIntoContigs && echo splitFaIntoContigs && make )
splitFaIntoContigs
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/splitFaIntoContigs'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o splitFaIntoContigs.o -c splitFaIntoContigs.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/splitFaIntoContigs splitFaIntoContigs.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/splitFaIntoContigs'
( cd sqlToXml && echo sqlToXml && make )
sqlToXml
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/sqlToXml'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o sqlToXml.o -c sqlToXml.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/sqlToXml sqlToXml.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/sqlToXml
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/sqlToXml
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/sqlToXml'
( cd test && echo test && make )
test
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/test'
cd ../../lib && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib'
ar rcus i686/jkweb.a aliType.o apacheLog.o asParse.o axt.o axtAffine.o base64.o basicBed.o bbiRead.o bbiWrite.o bigBed.o binRange.o bits.o blastOut.o blastParse.o boxClump.o boxLump.o bPlusTree.o bwgCreate.o bwgQuery.o cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o cheapcgi.o cirTree.o codebias.o colHash.o common.o correlate.o crTree.o dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaMotif.o dnaseq.o dnautil.o dtdParse.o dystring.o emblParse.o errCatch.o errabort.o fa.o ffAli.o ffScore.o filePath.o fixColor.o flydna.o fof.o fuzzyShow.o gapCalc.o gdf.o gemfont.o genomeRangeTree.o gfNet.o gff.o gff3.o gfxPoly.o gifLabel.o gifcomp.o gifdecomp.o gifread.o gifwrite.o hash.o histogram.o hmmPfamParse.o hmmstats.o htmlPage.o htmshell.o https.o intExp.o intValTree.o internet.o itsa.o jointalign.o jpegSize.o keys.o kxTok.o linefile.o localmem.o log.o maf.o mafFromAxt.o mafScore.o md5.o memalloc.o memgfx.o mgCircle.o mgHugeFont.o mgLargeFont.o mgMediumFont.o mgPolygon.o mgSmallFont.o mgTinyFont.o mime.o net.o nib.o nibTwo.o nt4.o numObscure.o obscure.o oldGff.o oligoTm.o options.o osunix.o pairHmm.o phyloTree.o pipeline.o portimpl.o pngwrite.o psGfx.o psPoly.o pscmGfx.o psl.o pslGenoShow.o pslShow.o pslTbl.o pslTransMap.o pthreadWrap.o qa.o quickHeap.o quotedP.o ra.o rbTree.o rangeTree.o repMask.o rle.o rnautil.o rqlEval.o rqlParse.o rudp.o scoreWindow.o seg.o seqOut.o seqStats.o servBrcMcw.o servCrunx.o servcis.o servcl.o servmsII.o servpws.o shaRes.o slog.o snof.o snofmake.o snofsig.o spaceSaver.o spacedColumn.o spacedSeed.o splatAli.o sqlList.o sqlNum.o subText.o sufa.o sufx.o synQueue.o tabRow.o textOut.o tokenizer.o trix.o twoBit.o udc.o vGfx.o vGif.o vPng.o verbose.o wildcmp.o wormdna.o xAli.o xa.o xap.o xenshow.o xmlEscape.o xp.o zlibFace.o
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o test.o -c test.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o test test.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm 
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/test'
( cd trfBig && echo trfBig && make )
trfBig
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/trfBig'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o trfBig.o -c trfBig.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/trfBig trfBig.o ../../lib/i686/jkweb.a   -lm
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/trfBig'
( cd txCds && echo txCds && make )
txCds
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds'
txCdsBadBed
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsBadBed'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txCdsBadBed.o -c txCdsBadBed.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsBadBed txCdsBadBed.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsBadBed
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsBadBed
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsBadBed'
txCdsCluster
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsCluster'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txCdsCluster.o -c txCdsCluster.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsCluster txCdsCluster.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsCluster
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsCluster
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsCluster'
txCdsEvFromBed
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsEvFromBed'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txCdsEvFromBed.o -c txCdsEvFromBed.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsEvFromBed txCdsEvFromBed.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsEvFromBed
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsEvFromBed
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsEvFromBed'
txCdsEvFromBorf
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsEvFromBorf'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txCdsEvFromBorf.o -c txCdsEvFromBorf.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsEvFromBorf txCdsEvFromBorf.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsEvFromBorf
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsEvFromBorf
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsEvFromBorf'
txCdsEvFromProtein
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsEvFromProtein'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txCdsEvFromProtein.o -c txCdsEvFromProtein.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsEvFromProtein txCdsEvFromProtein.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsEvFromProtein
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsEvFromProtein
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsEvFromProtein'
txCdsEvFromRna
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsEvFromRna'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txCdsEvFromRna.o -c txCdsEvFromRna.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsEvFromRna txCdsEvFromRna.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsEvFromRna
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsEvFromRna
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsEvFromRna'
txCdsGoodBed
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsGoodBed'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txCdsGoodBed.o -c txCdsGoodBed.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsGoodBed txCdsGoodBed.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsGoodBed
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsGoodBed
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsGoodBed'
txCdsOrfInfo
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsOrfInfo'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txCdsOrfInfo.o -c txCdsOrfInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsOrfInfo txCdsOrfInfo.o ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsOrfInfo
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsOrfInfo
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsOrfInfo'
txCdsOrtho
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsOrtho'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txCdsOrtho.o -c txCdsOrtho.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsOrtho txCdsOrtho.o ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsOrtho
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsOrtho
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsOrtho'
txCdsPick
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsPick'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txCdsPick.o -c txCdsPick.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsPick txCdsPick.o   ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsPick
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsPick
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsPick'
txCdsPredict
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsPredict'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txCdsPredict.o -c txCdsPredict.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsPredict txCdsPredict.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsPredict
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsPredict
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsPredict'
txCdsRaExceptions
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsRaExceptions'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txCdsRaExceptions.o -c txCdsRaExceptions.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsRaExceptions txCdsRaExceptions.o ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsRaExceptions
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsRaExceptions
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsRaExceptions'
txCdsRefBestEvOnly
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsRefBestEvOnly'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txCdsRefBestEvOnly.o -c txCdsRefBestEvOnly.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsRefBestEvOnly txCdsRefBestEvOnly.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsRefBestEvOnly
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsRefBestEvOnly
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsRefBestEvOnly'
txCdsRepick
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsRepick'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txCdsRepick.o -c txCdsRepick.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsRepick txCdsRepick.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsRepick
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsRepick
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsRepick'
txCdsSuspect
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsSuspect'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txCdsSuspect.o -c txCdsSuspect.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsSuspect txCdsSuspect.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsSuspect
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsSuspect
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsSuspect'
txCdsSvmInput
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsSvmInput'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txCdsSvmInput.o -c txCdsSvmInput.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsSvmInput txCdsSvmInput.o  ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsSvmInput
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsSvmInput
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsSvmInput'
txCdsToGene
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsToGene'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txCdsToGene.o -c txCdsToGene.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsToGene txCdsToGene.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsToGene
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsToGene
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsToGene'
txCdsWeed
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsWeed'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txCdsWeed.o -c txCdsWeed.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsWeed txCdsWeed.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsWeed
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txCdsWeed
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txCdsWeed'
txInfoAssemble
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txInfoAssemble'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txInfoAssemble.o -c txInfoAssemble.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txInfoAssemble txInfoAssemble.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txInfoAssemble
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txInfoAssemble
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds/txInfoAssemble'
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txCds'
( cd txGene && echo txGene && make )
txGene
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene'
txGenbankData
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGenbankData'
cp -p txGenbankData /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts/txGenbankData.tmp
mv -f /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts/txGenbankData.tmp /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts/txGenbankData
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGenbankData'
txGeneAccession
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneAccession'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txGeneAccession.o -c txGeneAccession.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneAccession txGeneAccession.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneAccession
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneAccession
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneAccession'
txGeneAlias
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneAlias'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txGeneAlias.o -c txGeneAlias.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneAlias txGeneAlias.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneAlias
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneAlias
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneAlias'
txGeneAltProt
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneAltProt'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txGeneAltProt.o -c txGeneAltProt.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneAltProt txGeneAltProt.o ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneAltProt
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneAltProt
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneAltProt'
txGeneCanonical
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneCanonical'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txGeneCanonical.o -c txGeneCanonical.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneCanonical txGeneCanonical.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneCanonical
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneCanonical
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneCanonical'
txGeneCdsMap
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneCdsMap'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txGeneCdsMap.o -c txGeneCdsMap.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneCdsMap txGeneCdsMap.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneCdsMap
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneCdsMap
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneCdsMap'
txGeneColor
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneColor'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txGeneColor.o -c txGeneColor.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneColor txGeneColor.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneColor
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneColor
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneColor'
txGeneExplainUpdate1
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneExplainUpdate1'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txGeneExplainUpdate1.o -c txGeneExplainUpdate1.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneExplainUpdate1 txGeneExplainUpdate1.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneExplainUpdate1
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneExplainUpdate1
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneExplainUpdate1'
txGeneFromBed
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneFromBed'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txGeneFromBed.o -c txGeneFromBed.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneFromBed txGeneFromBed.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneFromBed
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneFromBed
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneFromBed'
txGeneProtAndRna
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneProtAndRna'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txGeneProtAndRna.o -c txGeneProtAndRna.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneProtAndRna txGeneProtAndRna.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneProtAndRna
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneProtAndRna
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneProtAndRna'
txGeneSeparateNoncoding
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneSeparateNoncoding'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txGeneSeparateNoncoding.o -c txGeneSeparateNoncoding.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneSeparateNoncoding txGeneSeparateNoncoding.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneSeparateNoncoding
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneSeparateNoncoding
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneSeparateNoncoding'
txGeneXref
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneXref'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txGeneXref.o -c txGeneXref.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneXref txGeneXref.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneXref
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txGeneXref
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene/txGeneXref'
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGene'
( cd txGraph && echo txGraph && make )
txGraph
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph'
agxToTxg
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/agxToTxg'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o agxToTxg.o -c agxToTxg.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agxToTxg agxToTxg.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agxToTxg
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agxToTxg
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/agxToTxg'
bedToTxEdges
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/bedToTxEdges'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bedToTxEdges.o -c bedToTxEdges.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedToTxEdges bedToTxEdges.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedToTxEdges
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedToTxEdges
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/bedToTxEdges'
txAbFragFind
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txAbFragFind'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txAbFragFind.o -c txAbFragFind.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txAbFragFind txAbFragFind.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txAbFragFind
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txAbFragFind
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txAbFragFind'
txBedToGraph
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txBedToGraph'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txBedToGraph.o -c txBedToGraph.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o makeGraph.o -c makeGraph.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txBedToGraph txBedToGraph.o makeGraph.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txBedToGraph
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txBedToGraph
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txBedToGraph'
txOrtho
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txOrtho'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txOrtho.o -c txOrtho.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txOrtho txOrtho.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txOrtho
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txOrtho
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txOrtho'
txPslFilter
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txPslFilter'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txPslFilter.o -c txPslFilter.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txPslFilter txPslFilter.o ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txPslFilter
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txPslFilter
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txPslFilter'
txPslToBed
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txPslToBed'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txPslToBed.o -c txPslToBed.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txPslToBed txPslToBed.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txPslToBed
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txPslToBed
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txPslToBed'
txReadRa
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txReadRa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txReadRa.o -c txReadRa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txReadRa txReadRa.o ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txReadRa
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txReadRa
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txReadRa'
txWalk
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txWalk'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txWalk.o -c txWalk.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txWalk txWalk.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txWalk
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txWalk
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txWalk'
txgAddEvidence
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txgAddEvidence'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txgAddEvidence.o -c txgAddEvidence.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgAddEvidence txgAddEvidence.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgAddEvidence
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgAddEvidence
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txgAddEvidence'
txgAnalyze
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txgAnalyze'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txgAnalyze.o -c txgAnalyze.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgAnalyze txgAnalyze.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgAnalyze
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgAnalyze
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txgAnalyze'
txgGoodEdges
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txgGoodEdges'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txgGoodEdges.o -c txgGoodEdges.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgGoodEdges txgGoodEdges.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgGoodEdges
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgGoodEdges
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txgGoodEdges'
txgToAgx
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txgToAgx'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txgToAgx.o -c txgToAgx.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgToAgx txgToAgx.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgToAgx
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgToAgx
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txgToAgx'
txgToXml
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txgToXml'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txgToXml.o -c txgToXml.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgToXml txgToXml.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgToXml
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgToXml
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txgToXml'
txgTrim
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txgTrim'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o txgTrim.o -c txgTrim.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgTrim txgTrim.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgTrim
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/txgTrim
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph/txgTrim'
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/txGraph'
( cd utils && echo utils && make )
utils
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils'
(cd bedWeedOverlapping && make)
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/bedWeedOverlapping'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bedWeedOverlapping.o -c bedWeedOverlapping.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedWeedOverlapping bedWeedOverlapping.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedWeedOverlapping
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedWeedOverlapping
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/bedWeedOverlapping'
(cd chromGraphFromBin && make)
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/chromGraphFromBin'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chromGraphFromBin.o -c chromGraphFromBin.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chromGraphFromBin chromGraphFromBin.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chromGraphFromBin
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chromGraphFromBin
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/chromGraphFromBin'
(cd chromGraphToBin && make)
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/chromGraphToBin'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chromGraphToBin.o -c chromGraphToBin.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chromGraphToBin chromGraphToBin.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chromGraphToBin
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chromGraphToBin
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/chromGraphToBin'
(cd crTreeIndexBed && make)
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/crTreeIndexBed'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o crTreeIndexBed.o -c crTreeIndexBed.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/crTreeIndexBed crTreeIndexBed.o ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/crTreeIndexBed
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/crTreeIndexBed
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/crTreeIndexBed'
(cd crTreeSearchBed && make)
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/crTreeSearchBed'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o crTreeSearchBed.o -c crTreeSearchBed.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/crTreeSearchBed crTreeSearchBed.o ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/crTreeSearchBed
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/crTreeSearchBed
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/crTreeSearchBed'
(cd gapToLift && make)
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/gapToLift'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gapToLift.o -c gapToLift.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gapToLift gapToLift.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gapToLift
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gapToLift
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/gapToLift'
(cd oligoMatch && make)
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/oligoMatch'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o oligoMatch.o -c oligoMatch.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/oligoMatch oligoMatch.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/oligoMatch'
(cd positionalTblCheck && make)
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/positionalTblCheck'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o positionalTblCheck.o -c positionalTblCheck.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/positionalTblCheck positionalTblCheck.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/positionalTblCheck
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/positionalTblCheck
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/positionalTblCheck'
(cd safePush && make)
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/safePush'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o safePush.o -c safePush.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/safePush safePush.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/safePush
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/safePush
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/safePush'
(cd toDev64 && make)
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/toDev64'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o toDev64.o -c toDev64.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/toDev64 toDev64.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/toDev64
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/toDev64
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/toDev64'
(cd twoBitMask && make)
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/twoBitMask'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o twoBitMask.o -c twoBitMask.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitMask twoBitMask.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitMask
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitMask
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/twoBitMask'
(cd gff3ToGenePred && make)
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/gff3ToGenePred'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gff3ToGenePred.o -c gff3ToGenePred.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gff3ToGenePred gff3ToGenePred.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gff3ToGenePred
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gff3ToGenePred
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/gff3ToGenePred'
(cd automation && make)
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/automation'
cp -p blastz-make-joblist /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts
cp -p blastz-normalizeLav /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts
cp -p blastz-run-ucsc /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts
cp -p doBlastzChainNet.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts
cp -p doEnsGeneUpdate.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts
cp -p doHgNearBlastp.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts
cp -p synBlastp.csh /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts
cp -p doRecipBest.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts
cp -p doRepeatMasker.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts
cp -p doWindowMasker.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts
cp -p doSimpleRepeat.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts
cp -p doSameSpeciesLiftOver.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts
cp -p ensVersions /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts
cp -p extractNestedRepeats.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts
cp -p extractGtf.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts
cp -p Encode.pm /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts
cp -p EnsGeneAutomate.pm /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts
cp -p HgAutomate.pm /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts
cp -p HgDb.pm /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts
cp -p HgRemoteScript.pm /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts
cp -p HgStepManager.pm /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts
cp -p liftRMAlign.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts
cp -p makeDownloads.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts
cp -p makeGenomeDb.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts
cp -p makePushQSql.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts
cp -p monthlyUpdateIgtc.csh /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts
cp -p simplePartition.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts
cp -p partitionSequence.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts
cp -p RAFile.pm /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts
cp -p SafePipe.pm /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts
cp -p updateIgtc.pl /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/cluster/scripts
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/automation'
(cd refreshNamedSessionCustomTracks && make)
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/refreshNamedSessionCustomTracks'
i686-pc-linux-gnu-gcc -O2 -pipe -DCGI_BIN=\"none\" -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686 -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o refreshNamedSessionCustomTracks.o -c refreshNamedSessionCustomTracks.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/refreshNamedSessionCustomTracks refreshNamedSessionCustomTracks.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/refreshNamedSessionCustomTracks
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/refreshNamedSessionCustomTracks
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/refreshNamedSessionCustomTracks'
(cd refSeqGet && make)
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/refSeqGet'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o refSeqVerInfo.o -c refSeqVerInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o refSeqGet.o -c refSeqGet.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/refSeqGet refSeqVerInfo.o refSeqGet.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/refSeqGet
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/refSeqGet
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/refSeqGet'
(cd tdbQuery && make)
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/tdbQuery'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o tdbQuery.o -c tdbQuery.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o tdbRecord.o -c tdbRecord.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/tdbQuery tdbQuery.o tdbRecord.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/tdbQuery'
(cd wigBedToStep && make)
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/wigBedToStep'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o wigBedToStep.o -c wigBedToStep.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/wigBedToStep wigBedToStep.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/wigBedToStep
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/wigBedToStep
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils/wigBedToStep'
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/utils'
( cd uniqSize && echo uniqSize && make )
uniqSize
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/uniqSize'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o uniqSize.o -c uniqSize.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o uniqSize uniqSize.o  ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm  
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/uniqSize'
( cd updateStsInfo && echo updateStsInfo && make )
updateStsInfo
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/updateStsInfo'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o updateStsInfo.o -c updateStsInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized updateStsInfo.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm  
mv a.out updateStsInfo
echo 'skipping strip'  updateStsInfo
skipping strip updateStsInfo
chmod a+rx updateStsInfo
cp updateStsInfo /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/updateStsInfo'
( cd visiGene/knownToVisiGene && echo visiGene/knownToVisiGene && make )
visiGene/knownToVisiGene
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/visiGene/knownToVisiGene'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o knownToVisiGene.o -c knownToVisiGene.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/knownToVisiGene knownToVisiGene.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/knownToVisiGene
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/knownToVisiGene
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/visiGene/knownToVisiGene'
( cd xmlCat && echo xmlCat && make )
xmlCat
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/xmlCat'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o xmlCat.o -c xmlCat.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/xmlCat xmlCat.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/xmlCat
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/xmlCat
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/xmlCat'
( cd xmlToSql && echo xmlToSql && make )
xmlToSql
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/xmlToSql'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o xmlToSql.o -c xmlToSql.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o elStat.o -c elStat.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o rename.o -c rename.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o tables.o -c tables.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/xmlToSql xmlToSql.o elStat.o rename.o tables.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/xmlToSql
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/xmlToSql
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/xmlToSql'
make: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg'
make -j14 -j1 -C src utils 
make: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src'
cd lib && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib'
ar rcus i686/jkweb.a aliType.o apacheLog.o asParse.o axt.o axtAffine.o base64.o basicBed.o bbiRead.o bbiWrite.o bigBed.o binRange.o bits.o blastOut.o blastParse.o boxClump.o boxLump.o bPlusTree.o bwgCreate.o bwgQuery.o cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o cheapcgi.o cirTree.o codebias.o colHash.o common.o correlate.o crTree.o dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaMotif.o dnaseq.o dnautil.o dtdParse.o dystring.o emblParse.o errCatch.o errabort.o fa.o ffAli.o ffScore.o filePath.o fixColor.o flydna.o fof.o fuzzyShow.o gapCalc.o gdf.o gemfont.o genomeRangeTree.o gfNet.o gff.o gff3.o gfxPoly.o gifLabel.o gifcomp.o gifdecomp.o gifread.o gifwrite.o hash.o histogram.o hmmPfamParse.o hmmstats.o htmlPage.o htmshell.o https.o intExp.o intValTree.o internet.o itsa.o jointalign.o jpegSize.o keys.o kxTok.o linefile.o localmem.o log.o maf.o mafFromAxt.o mafScore.o md5.o memalloc.o memgfx.o mgCircle.o mgHugeFont.o mgLargeFont.o mgMediumFont.o mgPolygon.o mgSmallFont.o mgTinyFont.o mime.o net.o nib.o nibTwo.o nt4.o numObscure.o obscure.o oldGff.o oligoTm.o options.o osunix.o pairHmm.o phyloTree.o pipeline.o portimpl.o pngwrite.o psGfx.o psPoly.o pscmGfx.o psl.o pslGenoShow.o pslShow.o pslTbl.o pslTransMap.o pthreadWrap.o qa.o quickHeap.o quotedP.o ra.o rbTree.o rangeTree.o repMask.o rle.o rnautil.o rqlEval.o rqlParse.o rudp.o scoreWindow.o seg.o seqOut.o seqStats.o servBrcMcw.o servCrunx.o servcis.o servcl.o servmsII.o servpws.o shaRes.o slog.o snof.o snofmake.o snofsig.o spaceSaver.o spacedColumn.o spacedSeed.o splatAli.o sqlList.o sqlNum.o subText.o sufa.o sufx.o synQueue.o tabRow.o textOut.o tokenizer.o trix.o twoBit.o udc.o vGfx.o vGif.o vPng.o verbose.o wildcmp.o wormdna.o xAli.o xa.o xap.o xenshow.o xmlEscape.o xp.o zlibFace.o
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib'
cd jkOwnLib && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/jkOwnLib'
ar rcus ../lib/i686/jkOwnLib.a bandExt.o crudeali.o ffAliHelp.o ffSeedExtend.o fuzzyFind.o genoFind.o gfBlatLib.o gfClientLib.o gfInternal.o gfOut.o gfPcrLib.o gfWebLib.o ooc.o patSpace.o splix.o supStitch.o trans3.o xenbig.o xensmall.o 
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/jkOwnLib'
cd hg/lib && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/lib'
make[1]: `../../lib/i686/jkhgap.a' is up to date.
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/lib'
cd hg/protein/lib && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/lib'
make[1]: `../../../lib/i686/jkpbap.a' is up to date.
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/lib'
ameme
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/ameme'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ameme.o -c ameme.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o fragFind.o -c fragFind.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized ameme.o fragFind.o ../lib/i686/jkweb.a -lm 
echo 'skipping strip'  a.out
skipping strip a.out
mv a.out /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ameme
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/ameme'
blat
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/blat'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blat blat.o ../lib/i686/jkOwnLib.a ../lib/i686/jkweb.a   -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blat
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/blat
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/blat'
cdnaAli
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli'
cd lib && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/lib'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o cdnaAli.o -c cdnaAli.c
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/lib'
cd ali2alx && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/ali2alx'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ali2alx.o -c ali2alx.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ali2alx ali2alx.o ../lib/cdnaAli.o ../../lib/i686/jkweb.a
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/ali2alx'
cd binGood && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/binGood'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o binGood.o -c binGood.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/binGood binGood.o ../lib/cdnaAli.o ../../lib/i686/jkweb.a
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/binGood'
cd cdnaOff && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/cdnaOff'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o cdnaOff.o -c cdnaOff.c
cd ../lib && make
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/lib'
make[3]: `cdnaAli.o' is up to date.
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/lib'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/cdnaOff cdnaOff.o  ../lib/cdnaAli.o ../../lib/i686/jkweb.a 
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/cdnaOff'
cd cluster && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/cluster'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o cluster.o -c cluster.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/cluster cluster.o ../lib/cdnaAli.o  ../../lib/i686/jkweb.a
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/cluster'
cd exonAli && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/exonAli'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o exonAli.o -c exonAli.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/exonAli exonAli.o ../../lib/i686/jkOwnLib.a ../../lib/i686/jkweb.a -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/exonAli'
cd findCdna && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/findCdna'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o findCdna.o -c findCdna.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized findCdna.o  ../../lib/i686/jkweb.a 
mv a.out /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/findCdna
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/findCdna'
cd g2cCheck && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/g2cCheck'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o g2cCheck.o -c g2cCheck.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o g2cCheck g2cCheck.o ../../lib/i686/jkweb.a
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/g2cCheck'
cd introns && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/introns'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o introns.o -c introns.c
i686-pc-linux-gnu-gcc -O2 -pipe -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/introns introns.o ../lib/cdnaAli.o \
	../../lib/i686/jkweb.a
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/introns
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/introns
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/introns'
cd refineAli && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/refineAli'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o refineAli.o -c refineAli.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/refiAli refineAli.o ../../lib/i686/jkOwnLib.a ../../lib/i686/jkweb.a -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/refineAli'
cd stitchea && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/stitchea'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o stitchea.o -c stitchea.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/stitchea stitchea.o ../../lib/i686/jkweb.a
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/stitchea'
cd sortFilt && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/sortFilt'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o sortFilt.o -c sortFilt.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/sortFilt sortFilt.o  ../../lib/i686/jkweb.a
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/sortFilt'
cd aliGlue && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/aliGlue'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o aliGlue.o -c aliGlue.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/aliGlue aliGlue.o ../../lib/i686/jkweb.a ../../lib/i686/jkOwnLib.a -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli/aliGlue'
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/cdnaAli'
index
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index'
cd bptForTwoBit && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/bptForTwoBit'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bptForTwoBit.o -c bptForTwoBit.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bptForTwoBit bptForTwoBit.o ../../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bptForTwoBit
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bptForTwoBit
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/bptForTwoBit'
cd bptLookupStringToBits64 && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/bptLookupStringToBits64'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bptLookupStringToBits64.o -c bptLookupStringToBits64.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bptLookupStringToBits64 bptLookupStringToBits64.o ../../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bptLookupStringToBits64
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bptLookupStringToBits64
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/bptLookupStringToBits64'
cd bptMakeStringToBits64 && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/bptMakeStringToBits64'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bptMakeStringToBits64.o -c bptMakeStringToBits64.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bptMakeStringToBits64 bptMakeStringToBits64.o ../../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bptMakeStringToBits64
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bptMakeStringToBits64
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/bptMakeStringToBits64'
cd indexfa && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/indexfa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o indexfa.o -c indexfa.c
cd ../../lib && make
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib'
ar rcus i686/jkweb.a aliType.o apacheLog.o asParse.o axt.o axtAffine.o base64.o basicBed.o bbiRead.o bbiWrite.o bigBed.o binRange.o bits.o blastOut.o blastParse.o boxClump.o boxLump.o bPlusTree.o bwgCreate.o bwgQuery.o cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o cheapcgi.o cirTree.o codebias.o colHash.o common.o correlate.o crTree.o dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaMotif.o dnaseq.o dnautil.o dtdParse.o dystring.o emblParse.o errCatch.o errabort.o fa.o ffAli.o ffScore.o filePath.o fixColor.o flydna.o fof.o fuzzyShow.o gapCalc.o gdf.o gemfont.o genomeRangeTree.o gfNet.o gff.o gff3.o gfxPoly.o gifLabel.o gifcomp.o gifdecomp.o gifread.o gifwrite.o hash.o histogram.o hmmPfamParse.o hmmstats.o htmlPage.o htmshell.o https.o intExp.o intValTree.o internet.o itsa.o jointalign.o jpegSize.o keys.o kxTok.o linefile.o localmem.o log.o maf.o mafFromAxt.o mafScore.o md5.o memalloc.o memgfx.o mgCircle.o mgHugeFont.o mgLargeFont.o mgMediumFont.o mgPolygon.o mgSmallFont.o mgTinyFont.o mime.o net.o nib.o nibTwo.o nt4.o numObscure.o obscure.o oldGff.o oligoTm.o options.o osunix.o pairHmm.o phyloTree.o pipeline.o portimpl.o pngwrite.o psGfx.o psPoly.o pscmGfx.o psl.o pslGenoShow.o pslShow.o pslTbl.o pslTransMap.o pthreadWrap.o qa.o quickHeap.o quotedP.o ra.o rbTree.o rangeTree.o repMask.o rle.o rnautil.o rqlEval.o rqlParse.o rudp.o scoreWindow.o seg.o seqOut.o seqStats.o servBrcMcw.o servCrunx.o servcis.o servcl.o servmsII.o servpws.o shaRes.o slog.o snof.o snofmake.o snofsig.o spaceSaver.o spacedColumn.o spacedSeed.o splatAli.o sqlList.o sqlNum.o subText.o sufa.o sufx.o synQueue.o tabRow.o textOut.o tokenizer.o trix.o twoBit.o udc.o vGfx.o vGif.o vPng.o verbose.o wildcmp.o wormdna.o xAli.o xa.o xap.o xenshow.o xmlEscape.o xp.o zlibFace.o
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized indexfa.o  ../../lib/i686/jkweb.a 
mv a.out /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/indexfa
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/indexfa'
cd indexgl && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/indexgl'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o indexgl.o -c indexgl.c
i686-pc-linux-gnu-gcc -O2 -pipe indexgl.o  ../../lib/i686/jkweb.a \
	-o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/indexgl 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/indexgl
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/indexgl
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/indexgl'
cd ixali && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/ixali'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ixali.o -c ixali.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized ixali.o  ../../lib/i686/jkweb.a 
mv a.out /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ixali
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/ixali'
cd ixword1 && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/ixword1'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ixword1.o -c ixword1.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized ixword1.o  ../../lib/i686/jkweb.a 
mv a.out /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ixword1
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/ixword1'
cd ixword3 && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/ixword3'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ixword3.o -c ixword3.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized ixword3.o  ../../lib/i686/jkweb.a 
mv a.out /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ixword3
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/ixword3'
cd makepgo && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/makepgo'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o makepgo.o -c makepgo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized makepgo.o  ../../lib/i686/jkweb.a 
mv a.out /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/makepgo
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/makepgo'
cd stToXao && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/stToXao'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o stToXao.o -c stToXao.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized stToXao.o  ../../lib/i686/jkweb.a 
mv a.out /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/stToXao
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/stToXao'
cd ixIxx && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/ixIxx'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ixIxx.o -c ixIxx.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ixIxx ixIxx.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ixIxx
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ixIxx
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index/ixIxx'
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/index'
reformat
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/reformat'
cd fatont4 && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/reformat/fatont4'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o fatont4.o -c fatont4.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized fatont4.o  ../../lib/i686/jkweb.a
mv a.out /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fatont4
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/reformat/fatont4'
cd gbtofa && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/reformat/gbtofa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gbtofa.o -c gbtofa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gbtofa gbtofa.o  ../../lib/i686/jkweb.a
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/reformat/gbtofa'
cd geniegff && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/reformat/geniegff'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o geniegff.o -c geniegff.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/geniegff geniegff.o  ../../lib/i686/jkweb.a
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/reformat/geniegff'
cd gffgenes && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/reformat/gffgenes'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc -DGZ_FILENAMES=1 -o gffgenes.o -c gffgenes.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gffgenes gffgenes.o  \
	../../lib/i686/jkweb.a
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gffgenes
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gffgenes
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/reformat/gffgenes'
cd moresyn && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/reformat/moresyn'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o moresyn.o -c moresyn.c
i686-pc-linux-gnu-gcc -O2 -pipe -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/moresyn moresyn.o  ../../lib/i686/jkweb.a
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/moresyn
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/moresyn
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/reformat/moresyn'
cd gb2cdi && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/reformat/gb2cdi'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gb2cdi.o -c gb2cdi.c
i686-pc-linux-gnu-gcc -O2 -pipe -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gb2cdi gb2cdi.o  ../../lib/i686/jkweb.a
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/reformat/gb2cdi'
cd wabToSt && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/reformat/wabToSt'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o wabToSt.o -c wabToSt.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/wabToSt wabToSt.o ../../lib/i686/jkweb.a  -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/reformat/wabToSt'
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/reformat'
xenoAli
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/xenoAli'
cd bwana && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/xenoAli/bwana'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bwana.o -c bwana.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized bwana.o  ../../lib/i686/jkOwnLib.a ../../lib/i686/jkweb.a
mv a.out /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bwana
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/xenoAli/bwana'
cd dynAlign && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/xenoAli/dynAlign'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dynAlign.o -c dynAlign.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized dynAlign.o  ../../lib/i686/jkOwnLib.a ../../lib/i686/jkweb.a -lm
chmod a+x a.out
chmod g-w a.out
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/xenoAli/dynAlign'
cd stitcher && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/xenoAli/stitcher'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o stitcher.o -c stitcher.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized stitcher.o  ../../lib/i686/jkOwnLib.a ../../lib/i686/jkweb.a -lm
mv a.out /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/stitcher
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/xenoAli/stitcher'
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/xenoAli'
dnaDust
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/dnaDust'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o dnadust.o -c dnadust.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized dnadust.o  ../lib/i686/jkweb.a
mv a.out dnadust.exe
chmod a+rx dnadust.exe
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/dnaDust'
protDust
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/protDust'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o protDust.o -c protDust.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized protDust.o  ../lib/i686/jkweb.a
mv a.out protDust.exe
chmod a+rx protDust.exe
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/protDust'
idbQuery
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/idbQuery'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o idbQuery.o -c idbQuery.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized idbQuery.o  ../lib/i686/jkweb.a
mv a.out idbQuery.exe
chmod a+rx idbQuery.exe
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/idbQuery'
scanIntrons
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/scanIntrons'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o scanIntrons.o -c scanIntrons.c
cd ../lib && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib'
ar rcus i686/jkweb.a aliType.o apacheLog.o asParse.o axt.o axtAffine.o base64.o basicBed.o bbiRead.o bbiWrite.o bigBed.o binRange.o bits.o blastOut.o blastParse.o boxClump.o boxLump.o bPlusTree.o bwgCreate.o bwgQuery.o cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o cheapcgi.o cirTree.o codebias.o colHash.o common.o correlate.o crTree.o dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaMotif.o dnaseq.o dnautil.o dtdParse.o dystring.o emblParse.o errCatch.o errabort.o fa.o ffAli.o ffScore.o filePath.o fixColor.o flydna.o fof.o fuzzyShow.o gapCalc.o gdf.o gemfont.o genomeRangeTree.o gfNet.o gff.o gff3.o gfxPoly.o gifLabel.o gifcomp.o gifdecomp.o gifread.o gifwrite.o hash.o histogram.o hmmPfamParse.o hmmstats.o htmlPage.o htmshell.o https.o intExp.o intValTree.o internet.o itsa.o jointalign.o jpegSize.o keys.o kxTok.o linefile.o localmem.o log.o maf.o mafFromAxt.o mafScore.o md5.o memalloc.o memgfx.o mgCircle.o mgHugeFont.o mgLargeFont.o mgMediumFont.o mgPolygon.o mgSmallFont.o mgTinyFont.o mime.o net.o nib.o nibTwo.o nt4.o numObscure.o obscure.o oldGff.o oligoTm.o options.o osunix.o pairHmm.o phyloTree.o pipeline.o portimpl.o pngwrite.o psGfx.o psPoly.o pscmGfx.o psl.o pslGenoShow.o pslShow.o pslTbl.o pslTransMap.o pthreadWrap.o qa.o quickHeap.o quotedP.o ra.o rbTree.o rangeTree.o repMask.o rle.o rnautil.o rqlEval.o rqlParse.o rudp.o scoreWindow.o seg.o seqOut.o seqStats.o servBrcMcw.o servCrunx.o servcis.o servcl.o servmsII.o servpws.o shaRes.o slog.o snof.o snofmake.o snofsig.o spaceSaver.o spacedColumn.o spacedSeed.o splatAli.o sqlList.o sqlNum.o subText.o sufa.o sufx.o synQueue.o tabRow.o textOut.o tokenizer.o trix.o twoBit.o udc.o vGfx.o vGif.o vPng.o verbose.o wildcmp.o wormdna.o xAli.o xa.o xap.o xenshow.o xmlEscape.o xp.o zlibFace.o
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/lib'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized scanIntrons.o ../lib/i686/jkweb.a
mv a.out scanIntrons.exe
chmod a+rx scanIntrons.exe
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/scanIntrons'
tracks
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/tracks'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o tracks.o -c tracks.c
i686-pc-linux-gnu-gcc -O2 -pipe tracks.o  ../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl 
mv a.out tracksWS120.exe
chmod a+rx tracksWS120.exe
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/tracks'
weblet
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/weblet'
cd bottleneck && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/weblet/bottleneck'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bottleneck.o -c bottleneck.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bottleneck bottleneck.o ../../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bottleneck
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bottleneck
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/weblet/bottleneck'
cd counter && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/weblet/counter'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o counter.o -c counter.c
counter.c: In function ‘incCount’:
counter.c:55:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
counter.c:57:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
counter.c:58:11: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
counter.c:66:15: warning: ignoring return value of ‘fwrite’, declared with attribute warn_unused_result
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized counter.o  ../../lib/i686/jkweb.a
mv a.out counter.exe
chmod a+rx counter.exe
echo 'skipping strip'  counter.exe
skipping strip counter.exe
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/weblet/counter'
cd hitreport && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/weblet/hitreport'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o hitreport.o -c hitreport.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized hitreport.o  ../../lib/i686/jkweb.a
mv a.out hitreport.exe
chmod a+rx hitreport.exe
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/weblet/hitreport'
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/weblet'
aladdin
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/aladdin'
cd aladdin && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/aladdin/aladdin'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o aladdin.o -c aladdin.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized aladdin.o  ../../lib/i686/jkweb.a -lm
mv a.out aladdin.exe
chmod a+rx aladdin.exe
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/aladdin/aladdin'
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/aladdin'
getgene
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/getgene'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o getgene.o -c getgene.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized getgene.o  ../lib/i686/jkweb.a
mv a.out getgene.exe
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/getgene'
primeMate
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/primeMate'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o primeMate.o -c primeMate.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized primeMate.o ../lib/i686/jkweb.a
mv a.out primeMate.exe
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/primeMate'
wormAli
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/wormAli'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o wormAli.o -c wormAli.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized wormAli.o  ../lib/i686/jkOwnLib.a ../lib/i686/jkweb.a -lm
mv a.out wormAli.exe
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/wormAli'
fuse
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/fuse'
udcFuse
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/fuse/udcFuse'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o udcFuse.o -c udcFuse.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/udcFuse udcFuse.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/udcFuse
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/udcFuse
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/fuse/udcFuse'
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/fuse'
cd utils && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils'
aNotB
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/aNotB'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o aNotB.o -c aNotB.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/aNotB aNotB.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/aNotB
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/aNotB
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/aNotB'
addCols
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/addCols'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o addCols.o -c addCols.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/addCols addCols.o  ../../lib/i686/jkweb.a 
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/addCols'
ave
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/ave'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ave.o -c ave.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ave ave.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ave
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ave
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/ave'
aveCols
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/aveCols'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o aveCols.o -c aveCols.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/aveCols aveCols.o  ../../lib/i686/jkweb.a 
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/aveCols'
bedClip
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bedClip'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bedClip.o -c bedClip.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedClip bedClip.o ../../lib/i686/jkweb.a  -lm -lz
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedClip
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedClip
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bedClip'
bedGraphToBigWig
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bedGraphToBigWig'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bedGraphToBigWig.o -c bedGraphToBigWig.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedGraphToBigWig bedGraphToBigWig.o ../../lib/i686/jkweb.a  -lm -lz 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedGraphToBigWig
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedGraphToBigWig
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bedGraphToBigWig'
bedToBigBed
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bedToBigBed'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bedToBigBed.o -c bedToBigBed.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedToBigBed bedToBigBed.o ../../lib/i686/jkweb.a  -lm -lz 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedToBigBed
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedToBigBed
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bedToBigBed'
bigBedSummary
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bigBedSummary'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bigBedSummary.o -c bigBedSummary.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigBedSummary bigBedSummary.o ../../lib/i686/jkweb.a  -lm -lz 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigBedSummary
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigBedSummary
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bigBedSummary'
bigBedToBed
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bigBedToBed'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bigBedToBed.o -c bigBedToBed.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigBedToBed bigBedToBed.o ../../lib/i686/jkweb.a  -lm -lz 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigBedToBed
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigBedToBed
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bigBedToBed'
bigWigInfo
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bigWigInfo'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bigWigInfo.o -c bigWigInfo.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigWigInfo bigWigInfo.o ../../lib/i686/jkweb.a  -lm -lz
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigWigInfo
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigWigInfo
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bigWigInfo'
bigWigSummary
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bigWigSummary'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bigWigSummary.o -c bigWigSummary.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigWigSummary bigWigSummary.o ../../lib/i686/jkweb.a  -lm -lz
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigWigSummary
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigWigSummary
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bigWigSummary'
bigWigToBedGraph
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bigWigToBedGraph'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bigWigToBedGraph.o -c bigWigToBedGraph.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigWigToBedGraph bigWigToBedGraph.o ../../lib/i686/jkweb.a  -lm -lz
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigWigToBedGraph
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigWigToBedGraph
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bigWigToBedGraph'
bigWigToWig
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bigWigToWig'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o bigWigToWig.o -c bigWigToWig.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigWigToWig bigWigToWig.o ../../lib/i686/jkweb.a  -lm -lz
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigWigToWig
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bigWigToWig
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/bigWigToWig'
calc
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/calc'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o calc.o -c calc.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/calc calc.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/calc
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/calc
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/calc'
catDir
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/catDir'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o catDir.o -c catDir.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/catDir catDir.o ../../lib/i686/jkweb.a  -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/catDir'
catUncomment
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/catUncomment'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o catUncomment.o -c catUncomment.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/catUncomment catUncomment.o  ../../lib/i686/jkweb.a
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/catUncomment
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/catUncomment
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/catUncomment'
ccCp
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/ccCp'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o ccCp.o -c ccCp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ccCp ccCp.o  ../../lib/i686/jkweb.a 
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/ccCp'
chopFaLines
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/chopFaLines'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o chopFaLines.o -c chopFaLines.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/chopFaLines chopFaLines.o ../../lib/i686/jkweb.a  
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/chopFaLines'
countChars
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/countChars'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o countChars.o -c countChars.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/countChars countChars.o  ../../lib/i686/jkweb.a 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/countChars
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/countChars
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/countChars'
convolve
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/convolve'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o convolve.o -c convolve.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/convolve convolve.o ../../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/convolve
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/convolve
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/convolve'
cvsTools
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/cvsTools'
chmod a+rx cvsFiles
cp -pf cvsFiles /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/cvsFiles
chmod a+rx cvsStatusFilter
cp -pf cvsStatusFilter /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/cvsStatusFilter
chmod a+rx cvsup
cp -pf cvsup /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/cvsup
chmod a+rx cvscheck
cp -pf cvscheck /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/cvscheck
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/cvsTools'
detab
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/detab'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o detab.o -c detab.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/detab detab.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/detab
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/detab
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/detab'
endsInLf
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/endsInLf'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o endsInLf.o -c endsInLf.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/endsInLf endsInLf.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/endsInLf
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/endsInLf
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/endsInLf'
fastqToFa
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/fastqToFa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o fastqToFa.o -c fastqToFa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fastqToFa fastqToFa.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fastqToFa
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fastqToFa
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/fastqToFa'
faAlign
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faAlign'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o faAlign.o -c faAlign.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faAlign faAlign.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faAlign
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faAlign
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faAlign'
faCmp
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faCmp'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o faCmp.o -c faCmp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faCmp faCmp.o ../../lib/i686/jkweb.a  -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faCmp'
faCount
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faCount'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o faCount.o -c faCount.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faCount faCount.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faCount
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faCount
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faCount'
faFilterN
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faFilterN'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o faFilterN.o -c faFilterN.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faFilterN faFilterN.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faFilterN
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faFilterN
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faFilterN'
faFilter
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faFilter'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o faFilter.o -c faFilter.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faFilter faFilter.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faFilter
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faFilter
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faFilter'
faFlyBaseToUcsc
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faFlyBaseToUcsc'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o faFlyBaseToUcsc.o -c faFlyBaseToUcsc.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faFlyBaseToUcsc faFlyBaseToUcsc.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faFlyBaseToUcsc
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faFlyBaseToUcsc
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faFlyBaseToUcsc'
faFrag
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faFrag'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o faFrag.o -c faFrag.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faFrag faFrag.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faFrag
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faFrag
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faFrag'
faGapLocs
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faGapLocs'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o faGapLocs.o -c faGapLocs.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faGapLocs faGapLocs.o  ../../lib/i686/jkweb.a -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faGapLocs'
faGapSizes
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faGapSizes'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o faGapSizes.o -c faGapSizes.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faGapSizes faGapSizes.o  ../../lib/i686/jkweb.a -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faGapSizes'
faNcbiToUcsc
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faNcbiToUcsc'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o faNcbiToUcsc.o -c faNcbiToUcsc.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faNcbiToUcsc faNcbiToUcsc.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faNcbiToUcsc
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faNcbiToUcsc
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faNcbiToUcsc'
faNoise
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faNoise'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o faNoise.o -c faNoise.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faNoise faNoise.o  ../../lib/i686/jkweb.a
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faNoise'
faOneRecord
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faOneRecord'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o faOneRecord.o -c faOneRecord.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faOneRecord faOneRecord.o ../../lib/i686/jkweb.a
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faOneRecord
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faOneRecord
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faOneRecord'
faPolyASizes
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faPolyASizes'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o faPolyASizes.o -c faPolyASizes.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faPolyASizes faPolyASizes.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faPolyASizes
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faPolyASizes
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faPolyASizes'
faRc
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faRc'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o faRc.o -c faRc.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faRc faRc.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faRc
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faRc
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faRc'
faSimplify
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faSimplify'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o faSimplify.o -c faSimplify.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faSimplify faSimplify.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faSimplify
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faSimplify
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faSimplify'
faSize
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faSize'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o faSize.o -c faSize.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faSize faSize.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faSize
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faSize
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faSize'
faSomeRecords
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faSomeRecords'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o faSomeRecords.o -c faSomeRecords.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faSomeRecords faSomeRecords.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faSomeRecords
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faSomeRecords
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faSomeRecords'
faSplit
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faSplit'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -ggdb -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o faSplit.o -c faSplit.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -ggdb -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faSplit faSplit.o  \
../../lib/i686/jkweb.a
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faSplit
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faSplit
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faSplit'
faToFastq
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faToFastq'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o faToFastq.o -c faToFastq.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToFastq faToFastq.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToFastq
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToFastq
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faToFastq'
faToNib
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faToNib'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToNib faToNib.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToNib
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToNib
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faToNib'
faToTab
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faToTab'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o faToTab.o -c faToTab.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToTab faToTab.o ../../lib/i686/jkweb.a  -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faToTab'
faToTwoBit
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faToTwoBit'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToTwoBit faToTwoBit.o ../../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToTwoBit
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faToTwoBit
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faToTwoBit'
faTrans
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faTrans'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o faTrans.o -c faTrans.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faTrans faTrans.o ../../lib/i686/jkweb.a  -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faTrans'
faTrimPolyA
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faTrimPolyA'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o faTrimPolyA.o -c faTrimPolyA.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faTrimPolyA faTrimPolyA.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faTrimPolyA
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faTrimPolyA
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faTrimPolyA'
faTrimRead
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faTrimRead'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o faTrimRead.o -c faTrimRead.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/faTrimRead faTrimRead.o ../../lib/i686/jkweb.a  -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/faTrimRead'
findMotif
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/findMotif'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o findMotif.o -c findMotif.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/findMotif findMotif.o ../../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/findMotif
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/findMotif
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/findMotif'
fixCr
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/fixCr'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o fixCr.o -c fixCr.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fixCr fixCr.o  ../../lib/i686/jkweb.a 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fixCr
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fixCr
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/fixCr'
gapSplit
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/gapSplit'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gapSplit.o -c gapSplit.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gapSplit gapSplit.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gapSplit
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gapSplit
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/gapSplit'
gffPeek
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/gffPeek'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gffPeek.o -c gffPeek.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gffPeek gffPeek.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gffPeek
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gffPeek
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/gffPeek'
headRest
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/headRest'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o headRest.o -c headRest.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/headRest headRest.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/headRest
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/headRest
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/headRest'
htmlPics
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/htmlPics'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o htmlPics.o -c htmlPics.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/htmlPics htmlPics.o  ../../lib/i686/jkweb.a 
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/htmlPics'
htmlCheck
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/htmlCheck'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o htmlCheck.o -c htmlCheck.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/htmlCheck htmlCheck.o ../../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/htmlCheck
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/htmlCheck
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/htmlCheck'
jkUniq
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/jkUniq'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o jkUniq.o -c jkUniq.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/jkUniq jkUniq.o  ../../lib/i686/jkweb.a 
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/jkUniq'
lineCount
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/lineCount'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o lineCount.o -c lineCount.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/lineCount lineCount.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/lineCount
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/lineCount
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/lineCount'
newProg
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/newProg'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o newProg.o -c newProg.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/newProg newProg.o  ../../lib/i686/jkweb.a
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/newProg'
nibFrag
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/nibFrag'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibFrag nibFrag.o ../../lib/i686/jkweb.a
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibFrag
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibFrag
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/nibFrag'
nibSize
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/nibSize'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o nibSize.o -c nibSize.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nibSize nibSize.o  ../../lib/i686/jkweb.a
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/nibSize'
nt4Frag
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/nt4Frag'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o nt4Frag.o -c nt4Frag.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/nt4Frag nt4Frag.o ../../lib/i686/jkweb.a  -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/nt4Frag'
pslToPslx
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/pslToPslx'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslToPslx.o -c pslToPslx.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslToPslx pslToPslx.o ../../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslToPslx
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslToPslx
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/pslToPslx'
pslToXa
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/pslToXa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o pslToXa.o -c pslToXa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/pslToXa pslToXa.o ../../lib/i686/jkweb.a  -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/pslToXa'
randomLines
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/randomLines'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o randomLines.o -c randomLines.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/randomLines randomLines.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/randomLines
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/randomLines
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/randomLines'
raSqlQuery
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/raSqlQuery'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o raSqlQuery.o -c raSqlQuery.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o raRecord.o -c raRecord.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/raSqlQuery raSqlQuery.o raRecord.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/raSqlQuery'
raToTab
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/raToTab'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o raToTab.o -c raToTab.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/raToTab raToTab.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/raToTab
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/raToTab
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/raToTab'
raToLines
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/raToLines'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o raToLines.o -c raToLines.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/raToLines raToLines.o ../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
#echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/raToLines
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o linesToRa.o -c linesToRa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/linesToRa linesToRa.o ../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
#echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/linesToRa
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/raToLines'
rmFaDups
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/rmFaDups'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o rmFaDups.o -c rmFaDups.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/rmFaDups rmFaDups.o  ../../lib/i686/jkweb.a
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/rmFaDups'
rowsToCols
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/rowsToCols'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o rowsToCols.o -c rowsToCols.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/rowsToCols rowsToCols.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/rowsToCols
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/rowsToCols
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/rowsToCols'
scaffoldFaToAgp
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/scaffoldFaToAgp'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o scaffoldFaToAgp.o -c scaffoldFaToAgp.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/scaffoldFaToAgp scaffoldFaToAgp.o  ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/scaffoldFaToAgp'
scrambleFa
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/scrambleFa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o scrambleFa.o -c scrambleFa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/scrambleFa scrambleFa.o  ../../lib/i686/jkweb.a 
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/scrambleFa'
sizeof
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/sizeof'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o sizeof.o -c sizeof.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/sizeof sizeof.o
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/sizeof
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/sizeof
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/sizeof'
spacedToTab
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/spacedToTab'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o spacedToTab.o -c spacedToTab.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spacedToTab spacedToTab.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spacedToTab
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/spacedToTab
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/spacedToTab'
splitFile
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/splitFile'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o splitFile.o -c splitFile.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/splitFile splitFile.o ../../lib/i686/jkweb.a  -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/splitFile'
splitFileByColumn
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/splitFileByColumn'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o splitFileByColumn.o -c splitFileByColumn.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/splitFileByColumn splitFileByColumn.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/splitFileByColumn
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/splitFileByColumn
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/splitFileByColumn'
stringify
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/stringify'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/stringify stringify.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/stringify
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/stringify
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/stringify'
subChar
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/subChar'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o subChar.o -c subChar.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/subChar subChar.o  ../../lib/i686/jkweb.a 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/subChar
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/subChar
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/subChar'
subColumn
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/subColumn'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o subColumn.o -c subColumn.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/subColumn subColumn.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/subColumn
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/subColumn
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/subColumn'
subs
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/subs'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o subs.o -c subs.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/subs subs.o  ../../lib/i686/jkweb.a 
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/subs'
tableSum
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/tableSum'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o tableSum.o -c tableSum.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/tableSum tableSum.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/tableSum
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/tableSum
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/tableSum'
tailLines
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/tailLines'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o tailLines.o -c tailLines.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/tailLines tailLines.o  ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/tailLines'
textHist2
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/textHist2'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o textHist2.o -c textHist2.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/textHist2 textHist2.o ../../lib/i686/jkweb.a  -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/textHist2'
textHistogram
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/textHistogram'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o textHistogram.o -c textHistogram.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/textHistogram textHistogram.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/textHistogram
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/textHistogram
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/textHistogram'
tickToDate
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/tickToDate'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o tickToDate.o -c tickToDate.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/tickToDate tickToDate.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/tickToDate
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/tickToDate
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/tickToDate'
timing
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/timing'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o gmtime.o -c gmtime.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gmtime gmtime.o ../../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gmtime
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gmtime
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o localtime.o -c localtime.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/localtime localtime.o ../../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/localtime
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/localtime
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o mktime.o -c mktime.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mktime mktime.o ../../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mktime
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/mktime
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/timing'
toLower
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/toLower'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o toLower.o -c toLower.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/toLower toLower.o  ../../lib/i686/jkweb.a
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/toLower'
toUpper
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/toUpper'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o toUpper.o -c toUpper.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/toUpper toUpper.o  ../../lib/i686/jkweb.a
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/toUpper'
twoBitInfo
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/twoBitInfo'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitInfo twoBitInfo.o ../../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitInfo
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitInfo
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/twoBitInfo'
twoBitToFa
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/twoBitToFa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitToFa twoBitToFa.o ../../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitToFa
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twoBitToFa
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/twoBitToFa'
udcCleanup
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/udcCleanup'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o udcCleanup.o -c udcCleanup.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/udcCleanup udcCleanup.o ../../lib/i686/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/udcCleanup
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/udcCleanup
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/udcCleanup'
undupFa
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/undupFa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o undupFa.o -c undupFa.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/undupFa undupFa.o  ../../lib/i686/jkweb.a
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/undupFa'
upper
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/upper'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o upper.o -c upper.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/upper upper.o  ../../lib/i686/jkweb.a
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/upper'
venn
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/venn'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o venn.o -c venn.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/venn venn.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/venn
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/venn
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/venn'
weedLines
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/weedLines'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o weedLines.o -c weedLines.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/weedLines weedLines.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/weedLines
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/weedLines
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/weedLines'
wigToBigWig
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/wigToBigWig'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o wigToBigWig.o -c wigToBigWig.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/wigToBigWig wigToBigWig.o ../../lib/i686/jkweb.a  -lm  -lz
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/wigToBigWig'
wigTestMaker
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/wigTestMaker'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o wigTestMaker.o -c wigTestMaker.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/wigTestMaker wigTestMaker.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/wigTestMaker
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/wigTestMaker
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/wigTestMaker'
wordLine
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/wordLine'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_i686   -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o wordLine.o -c wordLine.c
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/wordLine wordLine.o  ../../lib/i686/jkweb.a 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/wordLine
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/wordLine
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils/wordLine'
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/utils'
cd hg && make utils
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg'
cd lib && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/lib'
make[2]: `../../lib/i686/jkhgap.a' is up to date.
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/lib'
cd protein/lib && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/lib'
make[2]: `../../../lib/i686/jkpbap.a' is up to date.
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/protein/lib'
( cd affyTransciptome && echo affyTransciptome && make )
affyTransciptome
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/affyTransciptome'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit  -I../inc -I../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/affyPairsToSample affyPairsToSample.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit  -I../inc -I../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/normalizeSampleFile normalizeSampleFile.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit  -I../inc -I../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/avgTranscriptomeExps avgTranscriptomeExps.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit  -I../inc -I../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/maxTranscriptomeExps maxTranscriptomeExps.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit  -I../inc -I../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/scaleSampleFiles scaleSampleFiles.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit  -I../inc -I../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/averageZoomLevels averageZoomLevels.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -Wimplicit  -I../inc -I../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/groupSamples groupSamples.c ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lz -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/affyTransciptome'
( cd agpCloneCheck && echo agpCloneCheck && make )
agpCloneCheck
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpCloneCheck'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpCloneCheck agpCloneCheck.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpCloneCheck'
( cd agpCloneList && echo agpCloneList && make )
agpCloneList
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpCloneList'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpCloneList agpCloneList.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpCloneList'
( cd agpAllToFaFile && echo agpAllToFaFile && make )
agpAllToFaFile
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpAllToFaFile'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpAllToFaFile agpAllToFaFile.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpAllToFaFile'
( cd agpToFa && echo agpToFa && make )
agpToFa
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpToFa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpToFa \
	agpToFa.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpToFa
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpToFa
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpToFa'
( cd agpToGl && echo agpToGl && make )
agpToGl
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpToGl'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpToGl agpToGl.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpToGl
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agpToGl
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/agpToGl'
( cd altSplice && echo altSplice && make )
altSplice
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/altSplice'
cd lib; make
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/altSplice/lib'
make[3]: `i686/libSpliceGraph.a' is up to date.
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/altSplice/lib'
cd altSplice; make
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/altSplice/altSplice'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/sequenceForBed sequenceForBed.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/altAnalysis altAnalysis.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/altSplice altSplice.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orthoSplice orthoSplice.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/agxToBed agxToBed.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/altSummary altSummary.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedInGraph bedInGraph.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/consForBed consForBed.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/altPaths altPaths.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedToExons bedToExons.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -I../inc -I../../inc  -I../../../inc  -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/genePredToPsl genePredToPsl.c -Wall ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a ../lib/i686/libSpliceGraph.a   /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm -lz
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/altSplice/altSplice'
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/altSplice'
( cd autoDtd && echo autoDtd && make )
autoDtd
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/autoDtd'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/autoDtd autoDtd.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/autoDtd
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/autoDtd
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/autoDtd'
( cd autoSql && echo autoSql && make )
autoSql
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/autoSql'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/autoSql'
( cd autoXml && echo autoXml && make )
autoXml
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/autoXml'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/autoXml autoXml.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/autoXml'
( cd bedOrBlocks && echo bedOrBlocks && make )
bedOrBlocks
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedOrBlocks'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedOrBlocks bedOrBlocks.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedOrBlocks
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedOrBlocks
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedOrBlocks'
( cd bedIntersect && echo bedIntersect && make )
bedIntersect
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedIntersect'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedIntersect bedIntersect.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedIntersect'
( cd bedItemOverlapCount && echo bedItemOverlapCount && make )
bedItemOverlapCount
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedItemOverlapCount'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedItemOverlapCount bedItemOverlapCount.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedItemOverlapCount
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedItemOverlapCount
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedItemOverlapCount'
( cd bedSort && echo bedSort && make )
bedSort
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedSort'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedSort bedSort.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedSort'
( cd bedToGenePred && echo bedToGenePred && make )
bedToGenePred
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedToGenePred'
make[2]: `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedToGenePred' is up to date.
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedToGenePred'
( cd bedSplitOnChrom && echo bedSplitOnChrom && make )
bedSplitOnChrom
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedSplitOnChrom'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedSplitOnChrom bedSplitOnChrom.o ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedSplitOnChrom
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedSplitOnChrom
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/bedSplitOnChrom'
( cd blastToPsl && echo blastToPsl && make )
blastToPsl
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/blastToPsl'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/blastToPsl'
( cd borfBig && echo borfBig && make )
borfBig
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/borfBig'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/borfBig borfBig.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/borfBig
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/borfBig
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/borfBig'
( cd checkHgFindSpec && echo checkHgFindSpec && make )
checkHgFindSpec
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/checkHgFindSpec'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o checkHgFindSpec checkHgFindSpec.o  ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
mv checkHgFindSpec /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkHgFindSpec
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/checkHgFindSpec'
( cd checkTableCoords && echo checkTableCoords && make )
checkTableCoords
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/checkTableCoords'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o checkTableCoords checkTableCoords.o  ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  checkTableCoords
skipping strip checkTableCoords
mv checkTableCoords /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkTableCoords
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/checkTableCoords'
( cd ctgFaToFa && echo ctgFaToFa && make )
ctgFaToFa
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ctgFaToFa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -O -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ctgFaToFa ctgFaToFa.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ctgFaToFa'
( cd ctgToChromFa && echo ctgToChromFa && make )
ctgToChromFa
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ctgToChromFa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ctgToChromFa ctgToChromFa.o  ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ctgToChromFa
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ctgToChromFa
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ctgToChromFa'
( cd dbTrash && echo dbTrash && make )
dbTrash
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/dbTrash'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dbTrash dbTrash.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dbTrash
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dbTrash
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/dbTrash'
( cd estOrient && echo estOrient && make )
estOrient
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/estOrient'
make[2]: `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/estOrient' is up to date.
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/estOrient'
( cd embossToPsl && echo embossToPsl && make )
embossToPsl
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/embossToPsl'
make[2]: `embossToPsl' is up to date.
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/embossToPsl'
( cd encode/validateFiles && echo encode/validateFiles && make )
encode/validateFiles
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/encode/validateFiles'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/validateFiles validateFiles.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/validateFiles
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/validateFiles
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/encode/validateFiles'
( cd fakeFinContigs && echo fakeFinContigs && make )
fakeFinContigs
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fakeFinContigs'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fakeFinContigs fakeFinContigs.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fakeFinContigs'
( cd fakeOut && echo fakeOut && make )
fakeOut
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fakeOut'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fakeOut fakeOut.o  ../../lib/i686/jkweb.a
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fakeOut'
( cd featureBits && echo featureBits && make )
featureBits
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/featureBits'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/featureBits featureBits.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/featureBits
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/featureBits
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/featureBits'
( cd ffaToFa && echo ffaToFa && make )
ffaToFa
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ffaToFa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -O -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/ffaToFa ffaToFa.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/ffaToFa'
( cd fishClones && echo fishClones && make )
fishClones
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fishClones'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized fishClones.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm  
mv a.out fishClones
echo 'skipping strip'  fishClones
skipping strip fishClones
chmod a+rx fishClones
cp fishClones /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fishClones'
( cd fqToQa && echo fqToQa && make )
fqToQa
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fqToQa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fqToQa fqToQa.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fqToQa
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fqToQa
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fqToQa'
( cd fqToQac && echo fqToQac && make )
fqToQac
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fqToQac'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fqToQac fqToQac.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fqToQac'
( cd fragPart && echo fragPart && make )
fragPart
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fragPart'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fragPart fragPart.o  ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fragPart
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/fragPart
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/fragPart'
( cd gbGetEntries && echo gbGetEntries && make )
gbGetEntries
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gbGetEntries'
i686-pc-linux-gnu-gcc -O2 -pipe -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gbGetEntries gbGetEntries.o  ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gbGetEntries'
( cd gbOneAcc && echo gbOneAcc && make )
gbOneAcc
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gbOneAcc'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gbOneAcc gbOneAcc.o  ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gbOneAcc'
( cd gbToFaRa && echo gbToFaRa && make )
gbToFaRa
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gbToFaRa'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -O -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/gbToFaRa gbToFaRa.o ../../lib/i686/jkhgap.a ../../lib/i686/jkweb.a  -lm
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/gbToFaRa'
( cd geneBounds && echo geneBounds && make )
geneBounds
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds'
( cd assessLibs && echo assessLibs && make )
assessLibs
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/assessLibs'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/assessLibs assessLibs.o  ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/assessLibs
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/assessLibs
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/assessLibs'
( cd averagExp && echo averagExp && make )
averagExp
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/averagExp'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/averagExp averagExp.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/averagExp
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/averagExp
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/averagExp'
( cd axtForEst && echo axtForEst && make )
axtForEst
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/axtForEst'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/axtForEst axtForEst.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/axtForEst'
( cd bedCons && echo bedCons && make )
bedCons
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/bedCons'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/bedCons bedCons.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/bedCons'
( cd checkableBorf && echo checkableBorf && make )
checkableBorf
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/checkableBorf'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkableBorf checkableBorf.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkableBorf
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/checkableBorf
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/checkableBorf'
( cd clusterGenes && echo clusterGenes && make )
clusterGenes
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/clusterGenes'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g   -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/clusterGenes clusterGenes.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/clusterGenes
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/clusterGenes
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/clusterGenes'
( cd clusterPsl && echo clusterPsl && make )
clusterPsl
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/clusterPsl'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/clusterPsl clusterPsl.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/clusterPsl
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/clusterPsl
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/clusterPsl'
( cd clusterRna && echo clusterRna && make )
clusterRna
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/clusterRna'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/clusterRna clusterRna.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/clusterRna'
( cd dnaMotifFind && echo dnaMotifFind && make )
dnaMotifFind
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/dnaMotifFind'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dnaMotifFind dnaMotifFind.o  ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dnaMotifFind
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/dnaMotifFind
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/dnaMotifFind'
( cd eisenInput && echo eisenInput && make )
eisenInput
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/eisenInput'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/eisenInput eisenInput.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/eisenInput
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/eisenInput
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/eisenInput'
( cd emblMatrixToMotif && echo emblMatrixToMotif && make )
emblMatrixToMotif
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/emblMatrixToMotif'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/emblMatrixToMotif emblMatrixToMotif.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/emblMatrixToMotif
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/emblMatrixToMotif
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/emblMatrixToMotif'
( cd estLibStats && echo estLibStats && make )
estLibStats
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/estLibStats'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/estLibStats estLibStats.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/estLibStats
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/estLibStats
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/estLibStats'
( cd expToRna && echo expToRna && make )
expToRna
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/expToRna'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/expToRna expToRna.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/expToRna
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/expToRna
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/expToRna'
( cd iriToControlTable && echo iriToControlTable && make )
iriToControlTable
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/iriToControlTable'
cd ../lib && make
make[4]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/lib'
echo all done
all done
make[4]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/lib'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/iriToControlTable iriToControlTable.o ../lib/improbRunInfo.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/iriToControlTable
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/iriToControlTable
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/iriToControlTable'
( cd iriToDnaMotif && echo iriToDnaMotif && make )
iriToDnaMotif
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/iriToDnaMotif'
cd ../lib && make
make[4]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/lib'
echo all done
all done
make[4]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/lib'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/iriToDnaMotif iriToDnaMotif.o ../lib/improbRunInfo.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/iriToDnaMotif
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/iriToDnaMotif
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/iriToDnaMotif'
( cd lib && echo lib && make )
lib
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/lib'
echo all done
all done
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/lib'
( cd liftPromoHits && echo liftPromoHits && make )
liftPromoHits
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/liftPromoHits'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftPromoHits liftPromoHits.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftPromoHits
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/liftPromoHits
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/liftPromoHits'
( cd motifLogo && echo motifLogo && make )
motifLogo
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/motifLogo'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/motifLogo motifLogo.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  /usr/lib/mysql/libmysqlclient.a -lz -lssl -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/motifLogo
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/motifLogo
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/motifLogo'
( cd motifSig && echo motifSig && make )
motifSig
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/motifSig'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/motifSig motifSig.o ../lib/improbRunInfo.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/motifSig
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/motifSig
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/motifSig'
( cd orf && echo orf && make )
orf
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/orf'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orf orf.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orf
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orf
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/orf'
( cd orfStats && echo orfStats && make )
orfStats
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/orfStats'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orfStats orfStats.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orfStats
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/orfStats
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/orfStats'
( cd polyInfo && echo polyInfo && make )
polyInfo
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/polyInfo'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/polyInfo polyInfo.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm  /usr/lib/mysql/libmysqlclient.a -lz -lssl
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/polyInfo'
( cd promoSeqFromCluster && echo promoSeqFromCluster && make )
promoSeqFromCluster
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/promoSeqFromCluster'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/promoSeqFromCluster promoSeqFromCluster.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm /usr/lib/mysql/libmysqlclient.a -lz -lssl
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/promoSeqFromCluster
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/promoSeqFromCluster
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/promoSeqFromCluster'
( cd raToCds && echo raToCds && make )
raToCds
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/raToCds'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/raToCds raToCds.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/raToCds
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/raToCds
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/raToCds'
( cd twinOrf && echo twinOrf && make )
twinOrf
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrf'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrf twinOrf.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrf
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrf
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrf'
( cd twinOrf2 && echo twinOrf2 && make )
twinOrf2
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrf2'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrf2 twinOrf2.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrf2'
( cd twinOrf3 && echo twinOrf3 && make )
twinOrf3
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrf3'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrf3 twinOrf3.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrf3
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrf3
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrf3'
( cd twinOrfStats && echo twinOrfStats && make )
twinOrfStats
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrfStats'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats twinOrfStats.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrfStats'
( cd twinOrfStats2 && echo twinOrfStats2 && make )
twinOrfStats2
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrfStats2'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats2 twinOrfStats2.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats2
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats2
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrfStats2'
( cd twinOrfStats3 && echo twinOrfStats3 && make )
twinOrfStats3
make[3]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrfStats3'
i686-pc-linux-gnu-gcc -O2 -pipe -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats3 twinOrfStats3.o ../../../lib/i686/jkhgap.a ../../../lib/i686/jkweb.a  -lm
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats3
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/destdir/opt/ucsc-genome-browser/bin/twinOrfStats3
make[3]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds/twinOrfStats3'
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-223/work/kent/src/hg/geneBounds'
( cd gen