build.log from 1.6

build.log (text/plain), 23.64 KB, created by Martin Mokrejš on 2010-09-20 18:51:38 UTC

 [32;01m*[0m CPV:  sci-biology/vaal-1.6
 [32;01m*[0m REPO: gentoo
 [32;01m*[0m USE:  elibc_glibc kernel_linux userland_GNU x86
>>> Unpacking source...
>>> Unpacking VAAL.1.6.tgz to /var/tmp/portage/sci-biology/vaal-1.6/work
>>> Unpacking VAAL_manual.doc to /var/tmp/portage/sci-biology/vaal-1.6/work
unpack VAAL_manual.doc: file format not recognized. Ignoring.
>>> Source unpacked in /var/tmp/portage/sci-biology/vaal-1.6/work
>>> Preparing source in /var/tmp/portage/sci-biology/vaal-1.6/work/vaal-33805 ...
 [32;01m*[0m Applying vaal-1.6-respect-flags.patch ...
[A[222C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running eautoreconf in '/var/tmp/portage/sci-biology/vaal-1.6/work/vaal-33805' ...
 [32;01m*[0m Running aclocal -I m4 ...
[A[222C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running libtoolize --copy --force --install --automake ...
[A[222C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running aclocal -I m4 ...
[A[222C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running autoconf ...
[A[222C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running autoheader ...
[A[222C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running automake --add-missing --copy --foreign ...
[A[222C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running elibtoolize in: vaal-33805/
 [32;01m*[0m   Applying portage-2.2.patch ...
 [32;01m*[0m   Applying sed-1.5.6.patch ...
 [32;01m*[0m   Applying as-needed-2.2.6.patch ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-biology/vaal-1.6/work/vaal-33805 ...
 * econf: updating vaal-33805/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating vaal-33805/config.sub with /usr/share/gnuconfig/config.sub
./configure --prefix=/usr --build=i686-pc-linux-gnu --host=i686-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking how to print strings... printf
checking for style of include used by make... GNU
checking for i686-pc-linux-gnu-gcc... i686-pc-linux-gnu-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether i686-pc-linux-gnu-gcc accepts -g... yes
checking for i686-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking dependency style of i686-pc-linux-gnu-gcc... gcc3
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by i686-pc-linux-gnu-gcc... /usr/i686-pc-linux-gnu/bin/ld
checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/i686-pc-linux-gnu/bin/ld option to reload object files... -r
checking for i686-pc-linux-gnu-objdump... i686-pc-linux-gnu-objdump
checking how to recognize dependent libraries... pass_all
checking for i686-pc-linux-gnu-ar... i686-pc-linux-gnu-ar
checking for i686-pc-linux-gnu-strip... i686-pc-linux-gnu-strip
checking for i686-pc-linux-gnu-ranlib... i686-pc-linux-gnu-ranlib
checking command to parse /usr/bin/nm -B output from i686-pc-linux-gnu-gcc object... ok
checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if i686-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for i686-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC
checking if i686-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes
checking if i686-pc-linux-gnu-gcc static flag -static works... yes
checking if i686-pc-linux-gnu-gcc supports -c -o file.o... yes
checking if i686-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes
checking whether the i686-pc-linux-gnu-gcc linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... no
checking whether to build static libraries... yes
checking for i686-pc-linux-gnu-g++... i686-pc-linux-gnu-g++
checking whether we are using the GNU C++ compiler... yes
checking whether i686-pc-linux-gnu-g++ accepts -g... yes
checking dependency style of i686-pc-linux-gnu-g++... gcc3
checking how to run the C++ preprocessor... i686-pc-linux-gnu-g++ -E
checking for ld used by i686-pc-linux-gnu-g++... /usr/i686-pc-linux-gnu/bin/ld
checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes
checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking for i686-pc-linux-gnu-g++ option to produce PIC... -fPIC -DPIC
checking if i686-pc-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes
checking if i686-pc-linux-gnu-g++ static flag -static works... yes
checking if i686-pc-linux-gnu-g++ supports -c -o file.o... yes
checking if i686-pc-linux-gnu-g++ supports -c -o file.o... (cached) yes
checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether byte ordering is bigendian... no
g++ version is >= 4.3.3... yes
checking for Boost headers version >= 103800... yes
checking for Boost's header version... 1_42
checking for the pthreads library -lpthreads... no
checking whether pthreads work without any flags... no
checking whether pthreads work with -Kthread... no
checking whether pthreads work with -kthread... no
checking for the pthreads library -llthread... no
checking whether pthreads work with -pthread... yes
checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
checking if more special flags are required for pthreads... no
checking for i686-pc-linux-gnu-gcc option to support OpenMP... -fopenmp
checking validity of OpenMP configuation.... configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/config.h
config.status: executing depfiles commands
config.status: executing libtool commands
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-biology/vaal-1.6/work/vaal-33805 ...
make -j4 
Making all in src
make[1]: Entering directory `/var/tmp/portage/sci-biology/vaal-1.6/work/vaal-33805/src'
(CDPATH="${ZSH_VERSION+.}:" && cd .. && /bin/sh /var/tmp/portage/sci-biology/vaal-1.6/work/vaal-33805/missing --run autoheader)
rm -f stamp-h1
touch config.h.in
cd .. && /bin/sh ./config.status src/config.h
config.status: creating src/config.h
config.status: src/config.h is unchanged
make  all-am
make[2]: Entering directory `/var/tmp/portage/sci-biology/vaal-1.6/work/vaal-33805/src'
i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I.  -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.31.14 -DMAKE_RELEASE=3.0 -DSVN_VERSION=33805  -fopenmp -O2 -march=pentium4 -mmmx -msse -msse2 -pipe -fno-strict-aliasing -ggdb -imacros config.h -Wextra -Wall -Wno-unused -ansi -pedantic -Wno-long-long -Wsign-promo -Woverloaded-virtual -Wendif-labels -O3 -ggdb3  -ftemplate-depth-50 -Wno-deprecated -Wno-parentheses -fno-strict-aliasing -mieee-fp -iquote . -MT Crash.o -MD -MP -MF .deps/Crash.Tpo -c -o Crash.o `test -f 'system/Crash.cc' || echo './'`system/Crash.cc
i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I.  -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.31.14 -DMAKE_RELEASE=3.0 -DSVN_VERSION=33805  -fopenmp -O2 -march=pentium4 -mmmx -msse -msse2 -pipe -fno-strict-aliasing -ggdb -imacros config.h -Wextra -Wall -Wno-unused -ansi -pedantic -Wno-long-long -Wsign-promo -Woverloaded-virtual -Wendif-labels -O3 -ggdb3  -ftemplate-depth-50 -Wno-deprecated -Wno-parentheses -fno-strict-aliasing -mieee-fp -iquote . -MT Mutmer.o -MD -MP -MF .deps/Mutmer.Tpo -c -o Mutmer.o `test -f 'pairwise_aligners/Mutmer.cc' || echo './'`pairwise_aligners/Mutmer.cc
i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I.  -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.31.14 -DMAKE_RELEASE=3.0 -DSVN_VERSION=33805  -fopenmp -O2 -march=pentium4 -mmmx -msse -msse2 -pipe -fno-strict-aliasing -ggdb -imacros config.h -Wextra -Wall -Wno-unused -ansi -pedantic -Wno-long-long -Wsign-promo -Woverloaded-virtual -Wendif-labels -O3 -ggdb3  -ftemplate-depth-50 -Wno-deprecated -Wno-parentheses -fno-strict-aliasing -mieee-fp -iquote . -MT Generic.o -MD -MP -MF .deps/Generic.Tpo -c -o Generic.o `test -f 'feudal/Generic.cc' || echo './'`feudal/Generic.cc
i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I.  -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.31.14 -DMAKE_RELEASE=3.0 -DSVN_VERSION=33805  -fopenmp -O2 -march=pentium4 -mmmx -msse -msse2 -pipe -fno-strict-aliasing -ggdb -imacros config.h -Wextra -Wall -Wno-unused -ansi -pedantic -Wno-long-long -Wsign-promo -Woverloaded-virtual -Wendif-labels -O3 -ggdb3  -ftemplate-depth-50 -Wno-deprecated -Wno-parentheses -fno-strict-aliasing -mieee-fp -iquote . -MT ReadPairing.o -MD -MP -MF .deps/ReadPairing.Tpo -c -o ReadPairing.o ReadPairing.cc
distcc[9434] ERROR: nonblocking connect to 127.0.0.1:3632 failed: Connection refused
distcc[9434] Warning: failed to distribute pairwise_aligners/Mutmer.cc to 127.0.0.1, running locally instead
mv -f .deps/Crash.Tpo .deps/Crash.Po
i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I.  -DRELEASE=3.0 -DMAKE_OS_RELEASE=2.6.31.14 -DMAKE_RELEASE=3.0 -DSVN_VERSION=33805  -fopenmp -O2 -march=pentium4 -mmmx -msse -msse2 -pipe -fno-strict-aliasing -ggdb -imacros config.h -Wextra -Wall -Wno-unused -ansi -pedantic -Wno-long-long -Wsign-promo -Woverloaded-virtual -Wendif-labels -O3 -ggdb3  -ftemplate-depth-50 -Wno-deprecated -Wno-parentheses -fno-strict-aliasing -mieee-fp -iquote . -MT FetchReadsAmb.o -MD -MP -MF .deps/FetchReadsAmb.Tpo -c -o FetchReadsAmb.o FetchReadsAmb.cc
In file included from ./feudal/FeudalString.h:29,
                 from ./feudal/CharString.h:19,
                 from ./String.h:13,
                 from ./system/System.h:16,
                 from ./CoreTools.h:17,
                 from ./feudal/FieldVec.h:20,
                 from ./feudal/BaseVec.h:13,
                 from ./Basevector.h:12,
                 from ./pairwise_aligners/Mutmer.h:33,
                 from pairwise_aligners/Mutmer.cc:9:
./feudal/SmallVec.h:443: warning: integer constant is too large for ‘long’ type
In file included from ./feudal/BaseVec.h:13,
                 from ./Basevector.h:12,
                 from ./pairwise_aligners/Mutmer.h:33,
                 from pairwise_aligners/Mutmer.cc:9:
./feudal/FieldVec.h:752: warning: integer constant is too large for ‘long’ type
In file included from ./feudal/FeudalString.h:29,
                 from ./feudal/CharString.h:19,
                 from ./String.h:13,
                 from ./system/System.h:16,
                 from ./CoreTools.h:17,
                 from ./feudal/FieldVec.h:20,
                 from ./feudal/BaseVec.h:13,
                 from ./Basevector.h:12,
                 from ./pairwise_aligners/Mutmer.h:33,
                 from pairwise_aligners/Mutmer.cc:9:
./feudal/SmallVec.h:443: warning: large integer implicitly truncated to unsigned type
In file included from ./feudal/MasterVec.h:24,
                 from ./VecString.h:14,
                 from ./CoreTools.h:22,
                 from ./feudal/FieldVec.h:20,
                 from ./feudal/BaseVec.h:13,
                 from ./Basevector.h:12,
                 from ./pairwise_aligners/Mutmer.h:33,
                 from pairwise_aligners/Mutmer.cc:9:
./feudal/OuterVec.h: In member function ‘size_t OuterVec<T, A>::max_size() const’:
./feudal/OuterVec.h:196: warning: left shift count >= width of type
In file included from ./feudal/BaseVec.h:13,
                 from ./Basevector.h:12,
                 from ./pairwise_aligners/Mutmer.h:33,
                 from pairwise_aligners/Mutmer.cc:9:
./feudal/FieldVec.h: At global scope:
./feudal/FieldVec.h:752: warning: large integer implicitly truncated to unsigned type
./feudal/FieldVec.h: In member function ‘FieldVec<N, A>& FieldVec<N, A>::push_back(unsigned char, float, unsigned int) [with int N = 2, A = MempoolAllocator<unsigned char>]’:
./feudal/FieldVec.h:494:   instantiated from ‘FieldVec<N, A>& FieldVec<N, A>::push_back(unsigned char) [with int N = 2, A = MempoolAllocator<unsigned char>]’
./feudal/BaseVec.h:184:   instantiated from here
./feudal/FieldVec.h:506: error: no matching function for call to ‘max(long unsigned int, const unsigned int&)’
In file included from ./feudal/FeudalString.h:29,
                 from ./feudal/CharString.h:19,
                 from ./String.h:13,
                 from ./system/System.h:16,
                 from ./CoreTools.h:17,
                 from ./feudal/FieldVec.h:20,
                 from ./feudal/BaseVec.h:13,
                 from ./Basevector.h:12,
                 from ./pairwise_aligners/Mutmer.h:33,
                 from pairwise_aligners/Mutmer.cc:9:
./feudal/SmallVec.h: In member function ‘SmallVec<T, A>& SmallVec<T, A>::push_back(const T&, float, unsigned int) [with T = char, A = MempoolAllocator<char>]’:
./feudal/SmallVec.h:215:   instantiated from ‘SmallVec<T, A>& SmallVec<T, A>::push_back(const T&) [with T = char, A = MempoolAllocator<char>]’
./Fastavector.h:59:   instantiated from here
./feudal/SmallVec.h:226: error: no matching function for call to ‘max(long unsigned int, const unsigned int&)’
distcc[9434] ERROR: compile pairwise_aligners/Mutmer.cc on localhost failed
make[2]: *** [Mutmer.o] Error 1
make[2]: *** Waiting for unfinished jobs....
distcc[9435] ERROR: compile feudal/Generic.cc on 195.113.57.236 failed
distcc[9435] (dcc_build_somewhere) Warning: remote compilation of 'feudal/Generic.cc' failed, retrying locally
distcc[9435] Warning: failed to distribute feudal/Generic.cc to 195.113.57.236, running locally instead
In file included from ./feudal/FeudalString.h:29,
                 from ./feudal/CharString.h:19,
                 from ./String.h:13,
                 from feudal/Generic.cc:20:
./feudal/SmallVec.h:443: warning: integer constant is too large for ‘long’ type
./feudal/SmallVec.h:443: warning: large integer implicitly truncated to unsigned type
./feudal/SmallVec.h: In member function ‘SmallVec<T, A>& SmallVec<T, A>::push_back(const T&, float, unsigned int) [with T = char, A = MempoolAllocator<char>]’:
./feudal/SmallVec.h:215:   instantiated from ‘SmallVec<T, A>& SmallVec<T, A>::push_back(const T&) [with T = char, A = MempoolAllocator<char>]’
./feudal/FeudalString.h:183:   instantiated from ‘FeudalString<charT, Traits>& FeudalString<charT, Traits>::push_back(charT) [with charT = char, Traits = std::char_traits<char>]’
./feudal/CharString.h:148:   instantiated from here
./feudal/SmallVec.h:226: error: no matching function for call to ‘max(long unsigned int, const unsigned int&)’
distcc[9435] ERROR: compile feudal/Generic.cc on localhost failed
make[2]: *** [Generic.o] Error 1
distcc[9436] ERROR: compile ReadPairing.cc on 192.168.251.1,lzo failed
distcc[9436] (dcc_build_somewhere) Warning: remote compilation of 'ReadPairing.cc' failed, retrying locally
distcc[9436] Warning: failed to distribute ReadPairing.cc to 192.168.251.1,lzo, running locally instead
In file included from ./feudal/FeudalString.h:29,
                 from ./feudal/CharString.h:19,
                 from ./String.h:13,
                 from system/System.h:16,
                 from CoreTools.h:17,
                 from ReadPairing.cc:14:
./feudal/SmallVec.h:443: warning: integer constant is too large for ‘long’ type
In file included from ./feudal/FeudalString.h:29,
                 from ./feudal/CharString.h:19,
                 from ./String.h:13,
                 from system/System.h:16,
                 from CoreTools.h:17,
                 from ReadPairing.cc:14:
./feudal/SmallVec.h:443: warning: large integer implicitly truncated to unsigned type
In file included from feudal/MasterVec.h:24,
                 from VecString.h:14,
                 from CoreTools.h:22,
                 from ReadPairing.cc:14:
./feudal/OuterVec.h: In member function ‘size_t OuterVec<T, A>::max_size() const’:
./feudal/OuterVec.h:196: warning: left shift count >= width of type
ReadPairing.cc: In function ‘void ReadsToPairs(const String&, const vec<int>&, vec<read_pairing>&, const String&)’:
ReadPairing.cc:115: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result
In file included from CoreTools.h:20,
                 from ReadPairing.cc:14:
Vec.h: In function ‘void BinaryReadSubset(const String&, const vec<int>&, vec<T>&) [with T = int]’:
ReadPairing.cc:105:   instantiated from here
Vec.h:872: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result
In file included from ./feudal/FeudalString.h:29,
                 from ./feudal/CharString.h:19,
                 from ./String.h:13,
                 from system/System.h:16,
                 from CoreTools.h:17,
                 from ReadPairing.cc:14:
./feudal/SmallVec.h: In member function ‘SmallVec<T, A>& SmallVec<T, A>::push_back(const T&, float, unsigned int) [with T = char, A = MempoolAllocator<char>]’:
./feudal/SmallVec.h:215:   instantiated from ‘SmallVec<T, A>& SmallVec<T, A>::push_back(const T&) [with T = char, A = MempoolAllocator<char>]’
./feudal/FeudalString.h:183:   instantiated from ‘FeudalString<charT, Traits>& FeudalString<charT, Traits>::push_back(charT) [with charT = char, Traits = std::char_traits<char>]’
./feudal/CharString.h:148:   instantiated from here
./feudal/SmallVec.h:226: error: no matching function for call to ‘max(long unsigned int, const unsigned int&)’
distcc[9436] ERROR: compile ReadPairing.cc on localhost failed
make[2]: *** [ReadPairing.o] Error 1
distcc[9451] ERROR: compile FetchReadsAmb.cc on 195.113.57.236 failed
distcc[9451] (dcc_build_somewhere) Warning: remote compilation of 'FetchReadsAmb.cc' failed, retrying locally
distcc[9451] Warning: failed to distribute FetchReadsAmb.cc to 195.113.57.236, running locally instead
In file included from ./feudal/FeudalString.h:29,
                 from ./feudal/CharString.h:19,
                 from ./String.h:13,
                 from ./system/System.h:16,
                 from ./CoreTools.h:17,
                 from ./feudal/FieldVec.h:20,
                 from feudal/BitVec.h:12,
                 from Bitvector.h:12,
                 from FetchReadsAmb.cc:22:
./feudal/SmallVec.h:443: warning: integer constant is too large for ‘long’ type
In file included from feudal/BitVec.h:12,
                 from Bitvector.h:12,
                 from FetchReadsAmb.cc:22:
./feudal/FieldVec.h:752: warning: integer constant is too large for ‘long’ type
In file included from ./feudal/FeudalString.h:29,
                 from ./feudal/CharString.h:19,
                 from ./String.h:13,
                 from ./system/System.h:16,
                 from ./CoreTools.h:17,
                 from ./feudal/FieldVec.h:20,
                 from feudal/BitVec.h:12,
                 from Bitvector.h:12,
                 from FetchReadsAmb.cc:22:
./feudal/SmallVec.h:443: warning: large integer implicitly truncated to unsigned type
In file included from ./feudal/MasterVec.h:24,
                 from ./VecString.h:14,
                 from ./CoreTools.h:22,
                 from ./feudal/FieldVec.h:20,
                 from feudal/BitVec.h:12,
                 from Bitvector.h:12,
                 from FetchReadsAmb.cc:22:
./feudal/OuterVec.h: In member function ‘size_t OuterVec<T, A>::max_size() const’:
./feudal/OuterVec.h:196: warning: left shift count >= width of type
In file included from feudal/BitVec.h:12,
                 from Bitvector.h:12,
                 from FetchReadsAmb.cc:22:
./feudal/FieldVec.h: At global scope:
./feudal/FieldVec.h:752: warning: large integer implicitly truncated to unsigned type
./feudal/FieldVec.h: In member function ‘FieldVec<N, A>& FieldVec<N, A>::push_back(unsigned char, float, unsigned int) [with int N = 2, A = MempoolAllocator<unsigned char>]’:
./feudal/FieldVec.h:494:   instantiated from ‘FieldVec<N, A>& FieldVec<N, A>::push_back(unsigned char) [with int N = 2, A = MempoolAllocator<unsigned char>]’
feudal/BaseVec.h:184:   instantiated from here
./feudal/FieldVec.h:506: error: no matching function for call to ‘max(long unsigned int, const unsigned int&)’
In file included from ./feudal/FeudalString.h:29,
                 from ./feudal/CharString.h:19,
                 from ./String.h:13,
                 from ./system/System.h:16,
                 from ./CoreTools.h:17,
                 from ./feudal/FieldVec.h:20,
                 from feudal/BitVec.h:12,
                 from Bitvector.h:12,
                 from FetchReadsAmb.cc:22:
./feudal/SmallVec.h: In member function ‘SmallVec<T, A>& SmallVec<T, A>::push_back(const T&, float, unsigned int) [with T = char, A = MempoolAllocator<char>]’:
./feudal/SmallVec.h:215:   instantiated from ‘SmallVec<T, A>& SmallVec<T, A>::push_back(const T&) [with T = char, A = MempoolAllocator<char>]’
./feudal/FeudalString.h:183:   instantiated from ‘FeudalString<charT, Traits>& FeudalString<charT, Traits>::push_back(charT) [with charT = char, Traits = std::char_traits<char>]’
./feudal/CharString.h:148:   instantiated from here
./feudal/SmallVec.h:226: error: no matching function for call to ‘max(long unsigned int, const unsigned int&)’
distcc[9451] ERROR: compile FetchReadsAmb.cc on localhost failed
make[2]: *** [FetchReadsAmb.o] Error 1
make[2]: Leaving directory `/var/tmp/portage/sci-biology/vaal-1.6/work/vaal-33805/src'
make[1]: *** [all] Error 2
make[1]: Leaving directory `/var/tmp/portage/sci-biology/vaal-1.6/work/vaal-33805/src'
make: *** [all-recursive] Error 1
emake failed
 [31;01m*[0m ERROR: sci-biology/vaal-1.6 failed:
 [31;01m*[0m   died running emake, base_src_make
 [31;01m*[0m 
 [31;01m*[0m Call stack:
 [31;01m*[0m     ebuild.sh, line   56:  Called src_compile
 [31;01m*[0m   environment, line 2952:  Called base_src_compile
 [31;01m*[0m   environment, line  418:  Called base_src_make
 [31;01m*[0m   environment, line  456:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m           emake "$@" || die "died running emake, $FUNCNAME";
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the output of 'emerge --info =sci-biology/vaal-1.6',
 [31;01m*[0m the complete build log and the output of 'emerge -pqv =sci-biology/vaal-1.6'.
 [31;01m*[0m The complete build log is located at '/var/tmp/portage/sci-biology/vaal-1.6/temp/build.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-biology/vaal-1.6/temp/environment'.
 [31;01m*[0m S: '/var/tmp/portage/sci-biology/vaal-1.6/work/vaal-33805'