--- configure.orig 2010-09-19 21:16:00.223008127 +0200 +++ configure 2010-09-19 21:29:10.194008127 +0200 @@ -18844,7 +18844,7 @@ LDFLAGS_save=$LDFLAGS # Provide known paths where distribs/OS can store JNI libs - LDFLAGS="-L/usr/lib/jni -L/usr/lib64/jni/ -L$SCI_SRCDIR/bin/ -L$SCI_SRCDIR/thirdparty/ -lpthread $HDF5_LIBS" + LDFLAGS="-L/usr/lib/jni -L/usr/lib64/jni/ -L$SCI_SRCDIR/bin/ -L$SCI_SRCDIR/thirdparty/ -lpthread $HDF5_LIBS -L`java-config -i hdf-java`" # -lpthread because of packaging bug in jhdf5 { $as_echo "$as_me:${as_lineno-$LINENO}: checking for h5JNIFatalError in -ljhdf5" >&5 $as_echo_n "checking for h5JNIFatalError in -ljhdf5... " >&6; }