Build log

poa-2:20100918-100131.log (text/plain), 4.28 KB, created by Diego Elio Pettenò (RETIRED) on 2010-09-18 11:33:44 UTC

 * CPV:  sci-biology/poa-2
 * REPO: gentoo
 * Maintainer: [e-mail]
 * USE:  elibc_glibc kernel_linux test userland_GNU x86
>>> Unpacking source...
>>> Unpacking poaV2.tar.gz to /var/tmp/portage/sci-biology/poa-2/work
 * Applying respect-cflags.patch ...
 [ ok ]
>>> Source unpacked in /var/tmp/portage/sci-biology/poa-2/work
>>> Compiling source in /var/tmp/portage/sci-biology/poa-2/work/poaV2 ...
make -j14 'OPT_CFLAGS=-O2 -pipe' poa 
gcc -O2 -pipe -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I.   -c -o align_score.o align_score.c
gcc -O2 -pipe -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I.   -c -o main.o main.c
gcc -O2 -pipe -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I.   -c -o black_flag.o black_flag.c
gcc -O2 -pipe -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I.   -c -o seq_util.o seq_util.c
gcc -O2 -pipe -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I.   -c -o fasta_format.o fasta_format.c
gcc -O2 -pipe -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I.   -c -o msa_format.o msa_format.c
gcc -O2 -pipe -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I.   -c -o align_lpo2.o align_lpo2.c
gcc -O2 -pipe -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I.   -c -o align_lpo_po2.o align_lpo_po2.c
gcc -O2 -pipe -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I.   -c -o buildup_lpo.o buildup_lpo.c
gcc -O2 -pipe -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I.   -c -o lpo.o lpo.c
gcc -O2 -pipe -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I.   -c -o heaviest_bundle.o heaviest_bundle.c
main.c: In function ‘main’:
main.c:225:7: warning: format ‘%s’ expects type ‘char *’, but argument 3 has type ‘struct FILE *’
gcc -O2 -pipe -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I.   -c -o lpo_format.o lpo_format.c
gcc -O2 -pipe -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I.   -c -o create_seq.o create_seq.c
gcc -O2 -pipe -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I.   -c -o remove_bundle.o remove_bundle.c
gcc -O2 -pipe -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I.   -c -o numeric_data.o numeric_data.c
align_lpo_po2.c: In function ‘align_lpo_po’:
align_lpo_po2.c:438:5: warning: format ‘%ld’ expects type ‘long int’, but argument 4 has type ‘int’
align_lpo_po2.c:438:5: warning: format ‘%ld’ expects type ‘long int’, but argument 6 has type ‘int’
gcc -O2 -pipe -DUSE_WEIGHTED_LINKS -DUSE_PROJECT_HEADER -I.   -c -o stringptr.o stringptr.c
lpo_format.c: In function ‘read_lpo_select’:
lpo_format.c:160:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result
lpo_format.c:161:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result
lpo_format.c:162:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result
lpo_format.c:185:11: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result
lpo_format.c: In function ‘read_lpo’:
lpo_format.c:61:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result
lpo_format.c:62:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result
lpo_format.c:63:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result
lpo_format.c:86:11: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result
numeric_data.c: In function ‘read_numeric_data’:
numeric_data.c:139:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result
rm -f liblpo.a
ar rc liblpo.a black_flag.o seq_util.o fasta_format.o msa_format.o align_lpo2.o align_lpo_po2.o buildup_lpo.o lpo.o heaviest_bundle.o lpo_format.o create_seq.o remove_bundle.o numeric_data.o stringptr.o
ranlib liblpo.a
gcc -o poa align_score.o main.o -lm liblpo.a
>>> Source compiled.
>>> Test phase [none]: sci-biology/poa-2

>>> Install poa-2 into /var/tmp/portage/sci-biology/poa-2/image/ category sci-biology
>>> Completed installing poa-2 into /var/tmp/portage/sci-biology/poa-2/image/

strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment
   usr/bin/poa
   usr/lib/liblpo.a

 * QA Notice: Files built without respecting LDFLAGS have been detected
 *  Please include the following list of files in your report:
 * /usr/bin/poa

 * poa requires a score matrix as the first argument.
 * This package installs two examples to /usr/share/poa/.