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Gentoo's Bugzilla – Attachment 246606 Details for
Bug 336607
sci-biology/eugene _FORTIFY_SOURCE indicates presence of overflow
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Build log
eugene-3.6:20100908-152305.log (text/plain), 84.10 KB, created by
Diego Elio Pettenò (RETIRED)
on 2010-09-09 14:48:24 UTC
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hide
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Description:
Build log
Filename:
MIME Type:
Creator:
Diego Elio Pettenò (RETIRED)
Created:
2010-09-09 14:48:24 UTC
Size:
84.10 KB
patch
obsolete
> * CPV: sci-biology/eugene-3.6 > * REPO: gentoo > * Maintainer: weaver@gentoo.org sci-biology@gentoo.org > * USE: elibc_glibc kernel_linux test userland_GNU x86 >>>> Unpacking source... >>>> Unpacking eugene-3.6.tar.gz to /var/tmp/portage/sci-biology/eugene-3.6/work >>>> Source unpacked in /var/tmp/portage/sci-biology/eugene-3.6/work >>>> Preparing source in /var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6 ... > * Running eautoreconf in '/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6' ... > * Running aclocal ... > [ ok ] > * Running autoconf ... > [ ok ] > * Running autoheader ... > [ ok ] > * Running automake --add-missing --copy ... > [ ok ] >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6 ... >./configure --prefix=/usr --build=i686-pc-linux-gnu --host=i686-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib >configure: loading site script /usr/share/config.site >configure: loading site script /usr/share/crossdev/include/site/linux >checking for a BSD-compatible install... /usr/bin/install -c >checking whether build environment is sane... yes >/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/config/missing: Unknown `--run' option >Try `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/config/missing --help' for more information >configure: WARNING: `missing' script is too old or missing >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking for i686-pc-linux-gnu-g++... i686-pc-linux-gnu-g++ >checking whether the C++ compiler works... yes >checking for C++ compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C++ compiler... yes >checking whether i686-pc-linux-gnu-g++ accepts -g... yes >checking for style of include used by make... GNU >checking dependency style of i686-pc-linux-gnu-g++... gcc3 >checking for i686-pc-linux-gnu-gcc... i686-pc-linux-gnu-gcc >checking whether we are using the GNU C compiler... yes >checking whether i686-pc-linux-gnu-gcc accepts -g... yes >checking for i686-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking dependency style of i686-pc-linux-gnu-gcc... gcc3 >checking for gawk... (cached) gawk >checking whether ln -s works... yes >checking for i686-pc-linux-gnu-ranlib... i686-pc-linux-gnu-ranlib >checking for main in -lc... yes >checking for main in -ldl... yes >checking for main in -lgcc... yes >checking for main in -lgd... yes >checking for main in -lm... yes >checking for main in -lpng... yes >checking for main in -lz... yes >checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking netdb.h usability... yes >checking netdb.h presence... yes >checking for netdb.h... yes >checking for stdlib.h... (cached) yes >checking for string.h... (cached) yes >checking for strings.h... (cached) yes >checking for unistd.h... (cached) yes >checking values.h usability... yes >checking values.h presence... yes >checking for values.h... yes >checking getopt.h usability... yes >checking getopt.h presence... yes >checking for getopt.h... yes >checking for an ANSI C-conforming const... yes >checking for inline... inline >checking whether struct tm is in sys/time.h or time.h... time.h >checking for size_t... yes >checking for stdlib.h... (cached) yes >checking for GNU libc compatible malloc... yes >checking whether lstat correctly handles trailing slash... yes >checking whether stat accepts an empty string... no >checking for floor... yes >checking for pow... yes >checking for sqrt... yes >checking for strchr... yes >checking for strspn... yes >checking for uname... yes >checking for getopt... yes >configure: creating ./config.status >config.status: creating Makefile >config.status: creating README >config.status: creating src/Makefile >config.status: creating src/GDIF/Makefile >config.status: creating src/Parametrization/Makefile >config.status: creating src/SensorPlugins/Makefile >config.status: creating src/SensorPlugins/0_SensorTk/Makefile >config.status: creating src/SensorPlugins/0_SensorTk/GetData/Makefile >config.status: creating src/SensorPlugins/AnnotaStruct/Makefile >config.status: creating src/SensorPlugins/BlastX/Makefile >config.status: creating src/SensorPlugins/Est/Makefile >config.status: creating src/SensorPlugins/EuStop/Makefile >config.status: creating src/SensorPlugins/FrameShift/Makefile >config.status: creating src/SensorPlugins/GCPlot/Makefile >config.status: creating src/SensorPlugins/GFF/Makefile >config.status: creating src/SensorPlugins/GSplicer/Makefile >config.status: creating src/SensorPlugins/Homology/Makefile >config.status: creating src/SensorPlugins/IfElse/Makefile >config.status: creating src/SensorPlugins/MarkovConst/Makefile >config.status: creating src/SensorPlugins/MarkovIMM/Makefile >config.status: creating src/SensorPlugins/MarkovIMM/GetData/Makefile >config.status: creating src/SensorPlugins/MarkovProt/Makefile >config.status: creating src/SensorPlugins/MarkovProt/GetData/Makefile >config.status: creating src/SensorPlugins/NG2/Makefile >config.status: creating src/SensorPlugins/NStart/Makefile >config.status: creating src/SensorPlugins/PatConst/Makefile >config.status: creating src/SensorPlugins/PepSignal/Makefile >config.status: creating src/SensorPlugins/Plotter/Makefile >config.status: creating src/SensorPlugins/Repeat/Makefile >config.status: creating src/SensorPlugins/Riken/Makefile >config.status: creating src/SensorPlugins/SMachine/Makefile >config.status: creating src/SensorPlugins/SPred/Makefile >config.status: creating src/SensorPlugins/SpliceWAM/Makefile >config.status: creating src/SensorPlugins/StartWAM/Makefile >config.status: creating src/SensorPlugins/Tester/Makefile >config.status: creating src/SensorPlugins/Transcript/Makefile >config.status: creating src/SensorPlugins/QualData/Makefile >config.status: creating src/SensorPlugins/NStretch/Makefile >config.status: creating src/SensorPlugins/NcRNA/Makefile >config.status: creating plugins/Makefile >config.status: creating doc/Makefile >config.status: creating config.h >config.status: executing depfiles commands >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6 ... >make -j14 >(CDPATH="${ZSH_VERSION+.}:" && cd . && autoheader) >rm -f stamp-h1 >touch config.h.in >cd . && /bin/sh ./config.status config.h >config.status: creating config.h >config.status: config.h is unchanged >make all-recursive >make[1]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6' >Making all in src >make[2]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src' >Making all in Parametrization >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/Parametrization' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -O2 -pipe -MT ParaOptimization.o -MD -MP -MF .deps/ParaOptimization.Tpo -c -o ParaOptimization.o ParaOptimization.cc >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -O2 -pipe -MT OptiAlgorithm.o -MD -MP -MF .deps/OptiAlgorithm.Tpo -c -o OptiAlgorithm.o OptiAlgorithm.cc >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -O2 -pipe -MT Random.o -MD -MP -MF .deps/Random.Tpo -c -o Random.o Random.cc >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -O2 -pipe -MT LineSearch.o -MD -MP -MF .deps/LineSearch.Tpo -c -o LineSearch.o LineSearch.cc >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -O2 -pipe -MT Genetic.o -MD -MP -MF .deps/Genetic.Tpo -c -o Genetic.o Genetic.cc >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -O2 -pipe -MT CrossingOver.o -MD -MP -MF .deps/CrossingOver.Tpo -c -o CrossingOver.o CrossingOver.cc >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -O2 -pipe -MT Mutating.o -MD -MP -MF .deps/Mutating.Tpo -c -o Mutating.o Mutating.cc >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -O2 -pipe -MT Scaling.o -MD -MP -MF .deps/Scaling.Tpo -c -o Scaling.o Scaling.cc >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -O2 -pipe -MT Selecting.o -MD -MP -MF .deps/Selecting.Tpo -c -o Selecting.o Selecting.cc >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -O2 -pipe -MT Sharing.o -MD -MP -MF .deps/Sharing.Tpo -c -o Sharing.o Sharing.cc >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -O2 -pipe -MT SimulatedAnnealing.o -MD -MP -MF .deps/SimulatedAnnealing.Tpo -c -o SimulatedAnnealing.o SimulatedAnnealing.cc >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../.. -rdynamic -fPIC -O2 -pipe -MT Chromosome.o -MD -MP -MF .deps/Chromosome.Tpo -c -o Chromosome.o Chromosome.cc >mv -f .deps/Scaling.Tpo .deps/Scaling.Po >mv -f .deps/Sharing.Tpo .deps/Sharing.Po >mv -f .deps/Random.Tpo .deps/Random.Po >mv -f .deps/Mutating.Tpo .deps/Mutating.Po >mv -f .deps/CrossingOver.Tpo .deps/CrossingOver.Po >mv -f .deps/SimulatedAnnealing.Tpo .deps/SimulatedAnnealing.Po >mv -f .deps/Chromosome.Tpo .deps/Chromosome.Po >mv -f .deps/Selecting.Tpo .deps/Selecting.Po >mv -f .deps/OptiAlgorithm.Tpo .deps/OptiAlgorithm.Po >mv -f .deps/ParaOptimization.Tpo .deps/ParaOptimization.Po >mv -f .deps/LineSearch.Tpo .deps/LineSearch.Po >mv -f .deps/Genetic.Tpo .deps/Genetic.Po >rm -f libParametrization.a >ar cru libParametrization.a ParaOptimization.o OptiAlgorithm.o Random.o LineSearch.o Genetic.o CrossingOver.o Mutating.o Scaling.o Selecting.o Sharing.o SimulatedAnnealing.o Chromosome.o >i686-pc-linux-gnu-ranlib libParametrization.a >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/Parametrization' >Making all in GDIF >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/GDIF' >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -O2 -pipe -MT gdIF.o -MD -MP -MF .deps/gdIF.Tpo -c -o gdIF.o gdIF.c >mv -f .deps/gdIF.Tpo .deps/gdIF.Po >rm -f libGDIF.a >ar cru libGDIF.a gdIF.o >i686-pc-linux-gnu-ranlib libGDIF.a >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/GDIF' >Making all in . >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT AltEst.o -MD -MP -MF .deps/AltEst.Tpo -c -o AltEst.o AltEst.cc >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT Attributes.o -MD -MP -MF .deps/Attributes.Tpo -c -o Attributes.o Attributes.cc >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT BackP.o -MD -MP -MF .deps/BackP.Tpo -c -o BackP.o BackP.cc >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT DAG.o -MD -MP -MF .deps/DAG.Tpo -c -o DAG.o DAG.cc >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT DNASeq.o -MD -MP -MF .deps/DNASeq.Tpo -c -o DNASeq.o DNASeq.cc >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT Dll.o -MD -MP -MF .deps/Dll.Tpo -c -o Dll.o Dll.cc >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT EuGene.o -MD -MP -MF .deps/EuGene.Tpo -c -o EuGene.o EuGene.cc >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT Gap.o -MD -MP -MF .deps/Gap.Tpo -c -o Gap.o Gap.cc >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT GeneFeature.o -MD -MP -MF .deps/GeneFeature.Tpo -c -o GeneFeature.o GeneFeature.cc >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT GeneFeatureSet.o -MD -MP -MF .deps/GeneFeatureSet.Tpo -c -o GeneFeatureSet.o GeneFeatureSet.cc >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT Gff3Line.o -MD -MP -MF .deps/Gff3Line.Tpo -c -o Gff3Line.o Gff3Line.cc >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT Hits.o -MD -MP -MF .deps/Hits.Tpo -c -o Hits.o Hits.cc >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT Locus.o -MD -MP -MF .deps/Locus.Tpo -c -o Locus.o Locus.cc >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT MSensor.o -MD -MP -MF .deps/MSensor.Tpo -c -o MSensor.o MSensor.cc >DNASeq.cc: In constructor âDNASeq::DNASeq(char*)â: >DNASeq.cc:139:31: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >Hits.cc: In member function âHits* Hits::ReadFromFile(FILE*, int*, int, int, int)â: >Hits.cc:167:77: warning: format â%asâ expects type âchar**â, but argument 11 has type âchar*â >Hits.cc:169:36: warning: format not a string literal and no format arguments >mv -f .deps/Dll.Tpo .deps/Dll.Po >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT Param.o -MD -MP -MF .deps/Param.Tpo -c -o Param.o Param.cc >mv -f .deps/DNASeq.Tpo .deps/DNASeq.Po >mv -f .deps/Gap.Tpo .deps/Gap.Po >mv -f .deps/Locus.Tpo .deps/Locus.Po >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT PenaltyDist.o -MD -MP -MF .deps/PenaltyDist.Tpo -c -o PenaltyDist.o PenaltyDist.cc >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT Prediction.o -MD -MP -MF .deps/Prediction.Tpo -c -o Prediction.o Prediction.cc >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT Range.o -MD -MP -MF .deps/Range.Tpo -c -o Range.o Range.cc >mv -f .deps/Gff3Line.Tpo .deps/Gff3Line.Po >mv -f .deps/BackP.Tpo .deps/BackP.Po >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT Sensor.o -MD -MP -MF .deps/Sensor.Tpo -c -o Sensor.o Sensor.cc >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT State.o -MD -MP -MF .deps/State.Tpo -c -o State.o State.cc >mv -f .deps/EuGene.Tpo .deps/EuGene.Po >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT SoTerms.o -MD -MP -MF .deps/SoTerms.Tpo -c -o SoTerms.o SoTerms.cc >PenaltyDist.cc: In member function âvoid PenaltyDist::LoadPenaltyDist(char*)â: >PenaltyDist.cc:116:48: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result >mv -f .deps/Attributes.Tpo .deps/Attributes.Po >mv -f .deps/Hits.Tpo .deps/Hits.Po >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT System.o -MD -MP -MF .deps/System.Tpo -c -o System.o System.cc >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -MT Target.o -MD -MP -MF .deps/Target.Tpo -c -o Target.o Target.cc >mv -f .deps/Range.Tpo .deps/Range.Po >mv -f .deps/State.Tpo .deps/State.Po >mv -f .deps/GeneFeature.Tpo .deps/GeneFeature.Po >mv -f .deps/GeneFeatureSet.Tpo .deps/GeneFeatureSet.Po >SoTerms.cc: In member function âvoid SoTerms::loadFile(char*)â: >SoTerms.cc:70:40: warning: format â%sâ expects type âchar*â, but argument 3 has type âchar (*)[100]â >SoTerms.cc:77:37: warning: format â%sâ expects type âchar*â, but argument 3 has type âchar (*)[100]â >mv -f .deps/PenaltyDist.Tpo .deps/PenaltyDist.Po >SoTerms.cc:76:28: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >mv -f .deps/System.Tpo .deps/System.Po >mv -f .deps/MSensor.Tpo .deps/MSensor.Po >In file included from /usr/include/string.h:642:0, > from Sensor.h:25, > from Sensor.cc:20: >In function âchar* strcpy(char*, const char*)â, > inlined from âvoid Signals::PrintS()â at Sensor.cc:231:48: >/usr/include/bits/string3.h:107:63: warning: call to char* __builtin___strcpy_chk(char*, const char*, unsigned int) will always overflow destination buffer >In function âchar* strcpy(char*, const char*)â, > inlined from âvoid Signals::PrintS()â at Sensor.cc:232:48: >/usr/include/bits/string3.h:107:63: warning: call to char* __builtin___strcpy_chk(char*, const char*, unsigned int) will always overflow destination buffer >In function âchar* strcpy(char*, const char*)â, > inlined from âvoid Signals::PrintS()â at Sensor.cc:233:48: >/usr/include/bits/string3.h:107:63: warning: call to char* __builtin___strcpy_chk(char*, const char*, unsigned int) will always overflow destination buffer >In function âchar* strcpy(char*, const char*)â, > inlined from âvoid Signals::PrintS()â at Sensor.cc:234:48: >/usr/include/bits/string3.h:107:63: warning: call to char* __builtin___strcpy_chk(char*, const char*, unsigned int) will always overflow destination buffer >In function âchar* strcpy(char*, const char*)â, > inlined from âvoid Signals::PrintS()â at Sensor.cc:235:48: >/usr/include/bits/string3.h:107:63: warning: call to char* __builtin___strcpy_chk(char*, const char*, unsigned int) will always overflow destination buffer >In function âchar* strcpy(char*, const char*)â, > inlined from âvoid Signals::PrintS()â at Sensor.cc:236:48: >/usr/include/bits/string3.h:107:63: warning: call to char* __builtin___strcpy_chk(char*, const char*, unsigned int) will always overflow destination buffer >In function âchar* strcpy(char*, const char*)â, > inlined from âvoid Signals::PrintS()â at Sensor.cc:237:48: >/usr/include/bits/string3.h:107:63: warning: call to char* __builtin___strcpy_chk(char*, const char*, unsigned int) will always overflow destination buffer >In function âchar* strcpy(char*, const char*)â, > inlined from âvoid Signals::PrintS()â at Sensor.cc:238:48: >/usr/include/bits/string3.h:107:63: warning: call to char* __builtin___strcpy_chk(char*, const char*, unsigned int) will always overflow destination buffer >In function âchar* strcpy(char*, const char*)â, > inlined from âvoid Signals::PrintS()â at Sensor.cc:239:48: >/usr/include/bits/string3.h:107:63: warning: call to char* __builtin___strcpy_chk(char*, const char*, unsigned int) will always overflow destination buffer >In function âchar* strcpy(char*, const char*)â, > inlined from âvoid Signals::PrintS()â at Sensor.cc:240:48: >/usr/include/bits/string3.h:107:63: warning: call to char* __builtin___strcpy_chk(char*, const char*, unsigned int) will always overflow destination buffer >mv -f .deps/Sensor.Tpo .deps/Sensor.Po >mv -f .deps/Target.Tpo .deps/Target.Po >mv -f .deps/SoTerms.Tpo .deps/SoTerms.Po >mv -f .deps/Param.Tpo .deps/Param.Po >mv -f .deps/AltEst.Tpo .deps/AltEst.Po >mv -f .deps/DAG.Tpo .deps/DAG.Po >mv -f .deps/Prediction.Tpo .deps/Prediction.Po >i686-pc-linux-gnu-g++ -rdynamic -fPIC -DDEFAULT_EUGENE_DIR=\"/usr/share/eugene\" -O2 -pipe -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o eugene AltEst.o Attributes.o BackP.o DAG.o DNASeq.o Dll.o EuGene.o Gap.o GeneFeature.o GeneFeatureSet.o Gff3Line.o Hits.o Locus.o MSensor.o Param.o PenaltyDist.o Prediction.o Range.o Sensor.o State.o SoTerms.o System.o Target.o Parametrization/libParametrization.a GDIF/libGDIF.a -ldl -lz -lpng -lm -lgd -lgcc -ldl -lc >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src' >Making all in SensorPlugins >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins' >Making all in 0_SensorTk >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/0_SensorTk' >Making all in GetData >make[5]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/0_SensorTk/GetData' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../../.. -O2 -pipe -MT WAMbuilder.o -MD -MP -MF .deps/WAMbuilder.Tpo -c -o WAMbuilder.o WAMbuilder.cc >../markov.cc: In member function âint TabChaine<CHAINE, T>::fichier2seq(FILE*, char*&) [with CHAINE = ChaineADN, T = int, FILE = _IO_FILE]â: >../markov.cc:396:3: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >../markov.cc: In member function âvoid TabChaine<CHAINE, T>::sauve2fichier(FILE*) [with CHAINE = ChaineADN, T = short unsigned int, FILE = _IO_FILE]â: >../markov.cc:516:3: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../markov.cc:517:3: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../markov.cc:518:3: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../markov.cc:523:5: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../markov.cc: In function âint fichier2protmat(FILE*, ProtMat*&)â: >../markov.cc:908:29: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result >../markov.cc:911:31: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result >../markov.cc:938:24: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result >mv -f .deps/WAMbuilder.Tpo .deps/WAMbuilder.Po >i686-pc-linux-gnu-g++ -O2 -pipe -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o egn_WAMbuilder WAMbuilder.o -lz -lpng -lm -lgd -lgcc -ldl -lc >make[5]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/0_SensorTk/GetData' >make[5]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/0_SensorTk' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT BStrArray.o -MD -MP -MF .deps/BStrArray.Tpo -c -o BStrArray.o BStrArray.cc >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT WAM.o -MD -MP -MF .deps/WAM.Tpo -c -o WAM.o WAM.cc >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT markov.o -MD -MP -MF .deps/markov.Tpo -c -o markov.o markov.cc >markov.cc: In function âint fichier2protmat(FILE*, ProtMat*&)â: >markov.cc:908:29: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result >markov.cc:911:31: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result >markov.cc:938:24: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result >markov.cc: In function âint fichier2protmat(FILE*, ProtMat*&)â: >markov.cc:908:29: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result >markov.cc:911:31: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result >markov.cc:938:24: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result >mv -f .deps/BStrArray.Tpo .deps/BStrArray.Po >mv -f .deps/markov.Tpo .deps/markov.Po >mv -f .deps/WAM.Tpo .deps/WAM.Po >rm -f libSensorTk.a >ar cru libSensorTk.a BStrArray.o WAM.o markov.o >i686-pc-linux-gnu-ranlib libSensorTk.a >make[5]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/0_SensorTk' >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/0_SensorTk' >Making all in AnnotaStruct >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/AnnotaStruct' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.AnnotaStruct.o -MD -MP -MF .deps/Sensor.AnnotaStruct.Tpo -c -o Sensor.AnnotaStruct.o Sensor.AnnotaStruct.cc >mv -f .deps/Sensor.AnnotaStruct.Tpo .deps/Sensor.AnnotaStruct.Po >i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o Sensor.AnnotaStruct.so Sensor.AnnotaStruct.o -lz -lpng -lm -lgd -lgcc -ldl -lc >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/AnnotaStruct' >Making all in BlastX >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/BlastX' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.BlastX.o -MD -MP -MF .deps/Sensor.BlastX.Tpo -c -o Sensor.BlastX.o Sensor.BlastX.cc >mv -f .deps/Sensor.BlastX.Tpo .deps/Sensor.BlastX.Po >i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o Sensor.BlastX.so Sensor.BlastX.o -lz -lpng -lm -lgd -lgcc -ldl -lc >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/BlastX' >Making all in Est >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Est' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.Est.o -MD -MP -MF .deps/Sensor.Est.Tpo -c -o Sensor.Est.o Sensor.Est.cc >mv -f .deps/Sensor.Est.Tpo .deps/Sensor.Est.Po >i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o Sensor.Est.so Sensor.Est.o -lz -lpng -lm -lgd -lgcc -ldl -lc >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Est' >Making all in EuStop >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/EuStop' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.EuStop.o -MD -MP -MF .deps/Sensor.EuStop.Tpo -c -o Sensor.EuStop.o Sensor.EuStop.cc >mv -f .deps/Sensor.EuStop.Tpo .deps/Sensor.EuStop.Po >i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o Sensor.EuStop.so Sensor.EuStop.o -lz -lpng -lm -lgd -lgcc -ldl -lc >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/EuStop' >Making all in FrameShift >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/FrameShift' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.FrameShift.o -MD -MP -MF .deps/Sensor.FrameShift.Tpo -c -o Sensor.FrameShift.o Sensor.FrameShift.cc >mv -f .deps/Sensor.FrameShift.Tpo .deps/Sensor.FrameShift.Po >i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o Sensor.FrameShift.so Sensor.FrameShift.o -lz -lpng -lm -lgd -lgcc -ldl -lc >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/FrameShift' >Making all in GCPlot >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/GCPlot' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.GCPlot.o -MD -MP -MF .deps/Sensor.GCPlot.Tpo -c -o Sensor.GCPlot.o Sensor.GCPlot.cc >mv -f .deps/Sensor.GCPlot.Tpo .deps/Sensor.GCPlot.Po >i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o Sensor.GCPlot.so Sensor.GCPlot.o -lz -lpng -lm -lgd -lgcc -ldl -lc >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/GCPlot' >Making all in GFF >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/GFF' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.GFF.o -MD -MP -MF .deps/Sensor.GFF.Tpo -c -o Sensor.GFF.o Sensor.GFF.cc >mv -f .deps/Sensor.GFF.Tpo .deps/Sensor.GFF.Po >i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o Sensor.GFF.so Sensor.GFF.o -lz -lpng -lm -lgd -lgcc -ldl -lc >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/GFF' >Making all in GSplicer >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/GSplicer' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.GSplicer.o -MD -MP -MF .deps/Sensor.GSplicer.Tpo -c -o Sensor.GSplicer.o Sensor.GSplicer.cc >mv -f .deps/Sensor.GSplicer.Tpo .deps/Sensor.GSplicer.Po >i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o Sensor.GSplicer.so Sensor.GSplicer.o -lz -lpng -lm -lgd -lgcc -ldl -lc >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/GSplicer' >Making all in Homology >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Homology' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.Homology.o -MD -MP -MF .deps/Sensor.Homology.Tpo -c -o Sensor.Homology.o Sensor.Homology.cc >Sensor.Homology.cc: In member function âvoid SensorHomology::ReadHomology(char*, DNASeq*, int, ProtMat*)â: >Sensor.Homology.cc:207:28: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result >../0_SensorTk/markov.cc: In function âint fichier2protmat(FILE*, ProtMat*&)â: >../0_SensorTk/markov.cc:908:29: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result >../0_SensorTk/markov.cc:911:31: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result >../0_SensorTk/markov.cc:938:24: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result >mv -f .deps/Sensor.Homology.Tpo .deps/Sensor.Homology.Po >i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o Sensor.Homology.so Sensor.Homology.o -lz -lpng -lm -lgd -lgcc -ldl -lc >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Homology' >Making all in IfElse >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/IfElse' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.IfElse.o -MD -MP -MF .deps/Sensor.IfElse.Tpo -c -o Sensor.IfElse.o Sensor.IfElse.cc >mv -f .deps/Sensor.IfElse.Tpo .deps/Sensor.IfElse.Po >i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o Sensor.IfElse.so Sensor.IfElse.o -lz -lpng -lm -lgd -lgcc -ldl -lc >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/IfElse' >Making all in MarkovConst >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovConst' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.MarkovConst.o -MD -MP -MF .deps/Sensor.MarkovConst.Tpo -c -o Sensor.MarkovConst.o Sensor.MarkovConst.cc >mv -f .deps/Sensor.MarkovConst.Tpo .deps/Sensor.MarkovConst.Po >i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o Sensor.MarkovConst.so Sensor.MarkovConst.o -lz -lpng -lm -lgd -lgcc -ldl -lc >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovConst' >Making all in MarkovIMM >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovIMM' >Making all in GetData >make[5]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovIMM/GetData' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../../.. -O2 -pipe -MT TrainIMM.o -MD -MP -MF .deps/TrainIMM.Tpo -c -o TrainIMM.o TrainIMM.cc >strarray.h: In member function âvoid String_Array::BinWrite(FILE*)â: >strarray.h:383:52: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >strarray.h:384:52: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >strarray.h:385:52: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >strarray.h:389:59: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >mv -f .deps/TrainIMM.Tpo .deps/TrainIMM.Po >i686-pc-linux-gnu-g++ -O2 -pipe -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o egn_TrainIMM TrainIMM.o -lz -lpng -lm -lgd -lgcc -ldl -lc >make[5]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovIMM/GetData' >make[5]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovIMM' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.MarkovIMM.o -MD -MP -MF .deps/Sensor.MarkovIMM.Tpo -c -o Sensor.MarkovIMM.o Sensor.MarkovIMM.cc >mv -f .deps/Sensor.MarkovIMM.Tpo .deps/Sensor.MarkovIMM.Po >i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o Sensor.MarkovIMM.so Sensor.MarkovIMM.o -lz -lpng -lm -lgd -lgcc -ldl -lc >make[5]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovIMM' >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovIMM' >Making all in MarkovProt >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovProt' >Making all in GetData >make[5]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovProt/GetData' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../../.. -O2 -pipe -MT buildMarkovProt.o -MD -MP -MF .deps/buildMarkovProt.Tpo -c -o buildMarkovProt.o buildMarkovProt.cc >buildMarkovProt.cc:39:20: warning: deprecated conversion from string constant to âchar*â >../../0_SensorTk/markov.cc: In member function âint TabChaine<CHAINE, T>::fichier2seq(FILE*, char*&) [with CHAINE = ChainePROT21, T = int, FILE = _IO_FILE]â: >../../0_SensorTk/markov.cc:396:3: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >../../0_SensorTk/markov.cc: In member function âvoid TabChaine<CHAINE, T>::sauve2fichier(FILE*) [with CHAINE = ChainePROT21, T = short unsigned int, FILE = _IO_FILE]â: >../../0_SensorTk/markov.cc:516:3: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../../0_SensorTk/markov.cc:517:3: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../../0_SensorTk/markov.cc:518:3: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../../0_SensorTk/markov.cc:523:5: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../../../DNASeq.cc: In constructor âDNASeq::DNASeq(char*)â: >../../../DNASeq.cc:139:31: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >../../0_SensorTk/markov.cc: In function âint fichier2protmat(FILE*, ProtMat*&)â: >../../0_SensorTk/markov.cc:908:29: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result >../../0_SensorTk/markov.cc:911:31: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result >../../0_SensorTk/markov.cc:938:24: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result >mv -f .deps/buildMarkovProt.Tpo .deps/buildMarkovProt.Po >i686-pc-linux-gnu-g++ -O2 -pipe -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o egn_buildMarkovProt buildMarkovProt.o -lz -lpng -lm -lgd -lgcc -ldl -lc >make[5]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovProt/GetData' >make[5]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovProt' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.MarkovProt.o -MD -MP -MF .deps/Sensor.MarkovProt.Tpo -c -o Sensor.MarkovProt.o Sensor.MarkovProt.cc >../0_SensorTk/markov.cc: In function âint fichier2protmat(FILE*, ProtMat*&)â: >../0_SensorTk/markov.cc:908:29: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result >../0_SensorTk/markov.cc:911:31: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result >../0_SensorTk/markov.cc:938:24: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result >mv -f .deps/Sensor.MarkovProt.Tpo .deps/Sensor.MarkovProt.Po >i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o Sensor.MarkovProt.so Sensor.MarkovProt.o -lz -lpng -lm -lgd -lgcc -ldl -lc >make[5]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovProt' >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovProt' >Making all in NG2 >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/NG2' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.NG2.o -MD -MP -MF .deps/Sensor.NG2.Tpo -c -o Sensor.NG2.o Sensor.NG2.cc >Sensor.NG2.cc: In member function âvoid SensorNG2::ReadNG2R(char*, int)â: >Sensor.NG2.cc:163:31: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >Sensor.NG2.cc: In member function âvoid SensorNG2::ReadNG2F(char*, int)â: >Sensor.NG2.cc:122:31: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >mv -f .deps/Sensor.NG2.Tpo .deps/Sensor.NG2.Po >i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o Sensor.NG2.so Sensor.NG2.o -lz -lpng -lm -lgd -lgcc -ldl -lc >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/NG2' >Making all in NStart >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/NStart' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.NStart.o -MD -MP -MF .deps/Sensor.NStart.Tpo -c -o Sensor.NStart.o Sensor.NStart.cc >mv -f .deps/Sensor.NStart.Tpo .deps/Sensor.NStart.Po >i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o Sensor.NStart.so Sensor.NStart.o -lz -lpng -lm -lgd -lgcc -ldl -lc >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/NStart' >Making all in PatConst >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/PatConst' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.PatConst.o -MD -MP -MF .deps/Sensor.PatConst.Tpo -c -o Sensor.PatConst.o Sensor.PatConst.cc >mv -f .deps/Sensor.PatConst.Tpo .deps/Sensor.PatConst.Po >i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o Sensor.PatConst.so Sensor.PatConst.o -lz -lpng -lm -lgd -lgcc -ldl -lc >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/PatConst' >Making all in PepSignal >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/PepSignal' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.PepSignal.o -MD -MP -MF .deps/Sensor.PepSignal.Tpo -c -o Sensor.PepSignal.o Sensor.PepSignal.cc >mv -f .deps/Sensor.PepSignal.Tpo .deps/Sensor.PepSignal.Po >i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o Sensor.PepSignal.so Sensor.PepSignal.o -lz -lpng -lm -lgd -lgcc -ldl -lc >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/PepSignal' >Making all in Plotter >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Plotter' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.Plotter.o -MD -MP -MF .deps/Sensor.Plotter.Tpo -c -o Sensor.Plotter.o Sensor.Plotter.cc >mv -f .deps/Sensor.Plotter.Tpo .deps/Sensor.Plotter.Po >i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o Sensor.Plotter.so Sensor.Plotter.o -lz -lpng -lm -lgd -lgcc -ldl -lc >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Plotter' >Making all in Repeat >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Repeat' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.Repeat.o -MD -MP -MF .deps/Sensor.Repeat.Tpo -c -o Sensor.Repeat.o Sensor.Repeat.cc >mv -f .deps/Sensor.Repeat.Tpo .deps/Sensor.Repeat.Po >i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o Sensor.Repeat.so Sensor.Repeat.o -lz -lpng -lm -lgd -lgcc -ldl -lc >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Repeat' >Making all in Riken >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Riken' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.Riken.o -MD -MP -MF .deps/Sensor.Riken.Tpo -c -o Sensor.Riken.o Sensor.Riken.cc >mv -f .deps/Sensor.Riken.Tpo .deps/Sensor.Riken.Po >i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o Sensor.Riken.so Sensor.Riken.o -lz -lpng -lm -lgd -lgcc -ldl -lc >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Riken' >Making all in SMachine >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/SMachine' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.SMachine.o -MD -MP -MF .deps/Sensor.SMachine.Tpo -c -o Sensor.SMachine.o Sensor.SMachine.cc >Sensor.SMachine.cc: In member function âvoid SensorSMachine::SpliceMachine()â: >Sensor.SMachine.cc:398:13: warning: ignoring return value of âint system(const char*)â, declared with attribute warn_unused_result >Sensor.SMachine.cc: In member function âvoid SensorSMachine::ReadSMachineSplices(char*, int)â: >Sensor.SMachine.cc:174:33: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >mv -f .deps/Sensor.SMachine.Tpo .deps/Sensor.SMachine.Po >i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o Sensor.SMachine.so Sensor.SMachine.o -lz -lpng -lm -lgd -lgcc -ldl -lc >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/SMachine' >Making all in SPred >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/SPred' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.SPred.o -MD -MP -MF .deps/Sensor.SPred.Tpo -c -o Sensor.SPred.o Sensor.SPred.cc >mv -f .deps/Sensor.SPred.Tpo .deps/Sensor.SPred.Po >i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o Sensor.SPred.so Sensor.SPred.o -lz -lpng -lm -lgd -lgcc -ldl -lc >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/SPred' >Making all in SpliceWAM >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/SpliceWAM' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.SpliceWAM.o -MD -MP -MF .deps/Sensor.SpliceWAM.Tpo -c -o Sensor.SpliceWAM.o Sensor.SpliceWAM.cc >../0_SensorTk/markov.cc: In function âint fichier2protmat(FILE*, ProtMat*&)â: >../0_SensorTk/markov.cc:908:29: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result >../0_SensorTk/markov.cc:911:31: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result >../0_SensorTk/markov.cc:938:24: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result >mv -f .deps/Sensor.SpliceWAM.Tpo .deps/Sensor.SpliceWAM.Po >i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o Sensor.SpliceWAM.so Sensor.SpliceWAM.o -lz -lpng -lm -lgd -lgcc -ldl -lc >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/SpliceWAM' >Making all in StartWAM >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/StartWAM' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.StartWAM.o -MD -MP -MF .deps/Sensor.StartWAM.Tpo -c -o Sensor.StartWAM.o Sensor.StartWAM.cc >../0_SensorTk/markov.cc: In function âint fichier2protmat(FILE*, ProtMat*&)â: >../0_SensorTk/markov.cc:908:29: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result >../0_SensorTk/markov.cc:911:31: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result >../0_SensorTk/markov.cc:938:24: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result >mv -f .deps/Sensor.StartWAM.Tpo .deps/Sensor.StartWAM.Po >i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o Sensor.StartWAM.so Sensor.StartWAM.o -lz -lpng -lm -lgd -lgcc -ldl -lc >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/StartWAM' >Making all in Tester >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Tester' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.Tester.o -MD -MP -MF .deps/Sensor.Tester.Tpo -c -o Sensor.Tester.o Sensor.Tester.cc >mv -f .deps/Sensor.Tester.Tpo .deps/Sensor.Tester.Po >i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o Sensor.Tester.so Sensor.Tester.o -lz -lpng -lm -lgd -lgcc -ldl -lc >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Tester' >Making all in Transcript >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Transcript' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.Transcript.o -MD -MP -MF .deps/Sensor.Transcript.Tpo -c -o Sensor.Transcript.o Sensor.Transcript.cc >mv -f .deps/Sensor.Transcript.Tpo .deps/Sensor.Transcript.Po >i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o Sensor.Transcript.so Sensor.Transcript.o -lz -lpng -lm -lgd -lgcc -ldl -lc >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Transcript' >Making all in QualData >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/QualData' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.QualData.o -MD -MP -MF .deps/Sensor.QualData.Tpo -c -o Sensor.QualData.o Sensor.QualData.cc >mv -f .deps/Sensor.QualData.Tpo .deps/Sensor.QualData.Po >i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o Sensor.QualData.so Sensor.QualData.o -lz -lpng -lm -lgd -lgcc -ldl -lc >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/QualData' >Making all in NStretch >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/NStretch' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.NStretch.o -MD -MP -MF .deps/Sensor.NStretch.Tpo -c -o Sensor.NStretch.o Sensor.NStretch.cc >mv -f .deps/Sensor.NStretch.Tpo .deps/Sensor.NStretch.Po >i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o Sensor.NStretch.so Sensor.NStretch.o -lz -lpng -lm -lgd -lgcc -ldl -lc >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/NStretch' >Making all in NcRNA >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/NcRNA' >i686-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -rdynamic -fPIC -O2 -pipe -MT Sensor.NcRNA.o -MD -MP -MF .deps/Sensor.NcRNA.Tpo -c -o Sensor.NcRNA.o Sensor.NcRNA.cc >mv -f .deps/Sensor.NcRNA.Tpo .deps/Sensor.NcRNA.Po >i686-pc-linux-gnu-g++ -rdynamic -fPIC -O2 -pipe -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -o Sensor.NcRNA.so Sensor.NcRNA.o -lz -lpng -lm -lgd -lgcc -ldl -lc >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/NcRNA' >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins' >make[4]: Nothing to be done for `all-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src' >Making all in plugins >make[2]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/plugins' >cp -f ../src/SensorPlugins/*/*.so . >make[2]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/plugins' >make[2]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6' >make[1]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6' >>>> Source compiled. > * Skipping make test/check due to ebuild restriction. >>>> Test phase [explicitly disabled]: sci-biology/eugene-3.6 > >>>> Install eugene-3.6 into /var/tmp/portage/sci-biology/eugene-3.6/image/ category sci-biology >make -j14 DESTDIR=/var/tmp/portage/sci-biology/eugene-3.6/image/ install >Making install in src >make[1]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src' >Making install in Parametrization >make[2]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/Parametrization' >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/Parametrization' >make[3]: Nothing to be done for `install-exec-am'. >make[3]: Nothing to be done for `install-data-am'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/Parametrization' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/Parametrization' >Making install in GDIF >make[2]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/GDIF' >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/GDIF' >make[3]: Nothing to be done for `install-exec-am'. >make[3]: Nothing to be done for `install-data-am'. >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/GDIF' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/GDIF' >Making install in . >make[2]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src' >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src' >test -z "/usr/bin" || /bin/mkdir -p "/var/tmp/portage/sci-biology/eugene-3.6/image//usr/bin" >make[3]: Nothing to be done for `install-data-am'. > /usr/bin/install -c eugene '/var/tmp/portage/sci-biology/eugene-3.6/image//usr/bin' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src' >Making install in SensorPlugins >make[2]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins' >Making install in 0_SensorTk >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/0_SensorTk' >Making install in GetData >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/0_SensorTk/GetData' >make[5]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/0_SensorTk/GetData' >test -z "/usr/bin" || /bin/mkdir -p "/var/tmp/portage/sci-biology/eugene-3.6/image//usr/bin" >make[5]: Nothing to be done for `install-data-am'. > /usr/bin/install -c egn_WAMbuilder '/var/tmp/portage/sci-biology/eugene-3.6/image//usr/bin' >make[5]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/0_SensorTk/GetData' >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/0_SensorTk/GetData' >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/0_SensorTk' >make[5]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/0_SensorTk' >make[5]: Nothing to be done for `install-exec-am'. >make[5]: Nothing to be done for `install-data-am'. >make[5]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/0_SensorTk' >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/0_SensorTk' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/0_SensorTk' >Making install in AnnotaStruct >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/AnnotaStruct' >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/AnnotaStruct' >make[4]: Nothing to be done for `install-exec-am'. >make[4]: Nothing to be done for `install-data-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/AnnotaStruct' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/AnnotaStruct' >Making install in BlastX >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/BlastX' >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/BlastX' >make[4]: Nothing to be done for `install-exec-am'. >make[4]: Nothing to be done for `install-data-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/BlastX' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/BlastX' >Making install in Est >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Est' >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Est' >make[4]: Nothing to be done for `install-exec-am'. >make[4]: Nothing to be done for `install-data-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Est' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Est' >Making install in EuStop >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/EuStop' >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/EuStop' >make[4]: Nothing to be done for `install-exec-am'. >make[4]: Nothing to be done for `install-data-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/EuStop' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/EuStop' >Making install in FrameShift >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/FrameShift' >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/FrameShift' >make[4]: Nothing to be done for `install-exec-am'. >make[4]: Nothing to be done for `install-data-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/FrameShift' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/FrameShift' >Making install in GCPlot >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/GCPlot' >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/GCPlot' >make[4]: Nothing to be done for `install-exec-am'. >make[4]: Nothing to be done for `install-data-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/GCPlot' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/GCPlot' >Making install in GFF >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/GFF' >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/GFF' >make[4]: Nothing to be done for `install-exec-am'. >make[4]: Nothing to be done for `install-data-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/GFF' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/GFF' >Making install in GSplicer >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/GSplicer' >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/GSplicer' >make[4]: Nothing to be done for `install-exec-am'. >make[4]: Nothing to be done for `install-data-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/GSplicer' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/GSplicer' >Making install in Homology >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Homology' >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Homology' >make[4]: Nothing to be done for `install-exec-am'. >make[4]: Nothing to be done for `install-data-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Homology' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Homology' >Making install in IfElse >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/IfElse' >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/IfElse' >make[4]: Nothing to be done for `install-exec-am'. >make[4]: Nothing to be done for `install-data-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/IfElse' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/IfElse' >Making install in MarkovConst >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovConst' >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovConst' >make[4]: Nothing to be done for `install-exec-am'. >make[4]: Nothing to be done for `install-data-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovConst' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovConst' >Making install in MarkovIMM >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovIMM' >Making install in GetData >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovIMM/GetData' >make[5]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovIMM/GetData' >test -z "/usr/bin" || /bin/mkdir -p "/var/tmp/portage/sci-biology/eugene-3.6/image//usr/bin" >make[5]: Nothing to be done for `install-data-am'. > /usr/bin/install -c egn_TrainIMM '/var/tmp/portage/sci-biology/eugene-3.6/image//usr/bin' >make[5]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovIMM/GetData' >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovIMM/GetData' >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovIMM' >make[5]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovIMM' >make[5]: Nothing to be done for `install-exec-am'. >make[5]: Nothing to be done for `install-data-am'. >make[5]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovIMM' >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovIMM' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovIMM' >Making install in MarkovProt >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovProt' >Making install in GetData >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovProt/GetData' >make[5]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovProt/GetData' >test -z "/usr/bin" || /bin/mkdir -p "/var/tmp/portage/sci-biology/eugene-3.6/image//usr/bin" >make[5]: Nothing to be done for `install-data-am'. > /usr/bin/install -c egn_buildMarkovProt '/var/tmp/portage/sci-biology/eugene-3.6/image//usr/bin' >make[5]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovProt/GetData' >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovProt/GetData' >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovProt' >make[5]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovProt' >make[5]: Nothing to be done for `install-exec-am'. >make[5]: Nothing to be done for `install-data-am'. >make[5]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovProt' >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovProt' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/MarkovProt' >Making install in NG2 >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/NG2' >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/NG2' >make[4]: Nothing to be done for `install-exec-am'. >make[4]: Nothing to be done for `install-data-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/NG2' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/NG2' >Making install in NStart >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/NStart' >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/NStart' >make[4]: Nothing to be done for `install-exec-am'. >make[4]: Nothing to be done for `install-data-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/NStart' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/NStart' >Making install in PatConst >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/PatConst' >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/PatConst' >make[4]: Nothing to be done for `install-exec-am'. >make[4]: Nothing to be done for `install-data-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/PatConst' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/PatConst' >Making install in PepSignal >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/PepSignal' >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/PepSignal' >make[4]: Nothing to be done for `install-exec-am'. >make[4]: Nothing to be done for `install-data-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/PepSignal' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/PepSignal' >Making install in Plotter >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Plotter' >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Plotter' >make[4]: Nothing to be done for `install-exec-am'. >make[4]: Nothing to be done for `install-data-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Plotter' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Plotter' >Making install in Repeat >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Repeat' >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Repeat' >make[4]: Nothing to be done for `install-exec-am'. >make[4]: Nothing to be done for `install-data-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Repeat' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Repeat' >Making install in Riken >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Riken' >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Riken' >make[4]: Nothing to be done for `install-exec-am'. >make[4]: Nothing to be done for `install-data-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Riken' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Riken' >Making install in SMachine >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/SMachine' >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/SMachine' >make[4]: Nothing to be done for `install-exec-am'. >make[4]: Nothing to be done for `install-data-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/SMachine' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/SMachine' >Making install in SPred >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/SPred' >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/SPred' >make[4]: Nothing to be done for `install-exec-am'. >make[4]: Nothing to be done for `install-data-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/SPred' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/SPred' >Making install in SpliceWAM >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/SpliceWAM' >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/SpliceWAM' >make[4]: Nothing to be done for `install-exec-am'. >make[4]: Nothing to be done for `install-data-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/SpliceWAM' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/SpliceWAM' >Making install in StartWAM >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/StartWAM' >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/StartWAM' >make[4]: Nothing to be done for `install-exec-am'. >make[4]: Nothing to be done for `install-data-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/StartWAM' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/StartWAM' >Making install in Tester >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Tester' >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Tester' >make[4]: Nothing to be done for `install-exec-am'. >make[4]: Nothing to be done for `install-data-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Tester' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Tester' >Making install in Transcript >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Transcript' >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Transcript' >make[4]: Nothing to be done for `install-exec-am'. >make[4]: Nothing to be done for `install-data-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Transcript' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/Transcript' >Making install in QualData >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/QualData' >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/QualData' >make[4]: Nothing to be done for `install-exec-am'. >make[4]: Nothing to be done for `install-data-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/QualData' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/QualData' >Making install in NStretch >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/NStretch' >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/NStretch' >make[4]: Nothing to be done for `install-exec-am'. >make[4]: Nothing to be done for `install-data-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/NStretch' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/NStretch' >Making install in NcRNA >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/NcRNA' >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/NcRNA' >make[4]: Nothing to be done for `install-exec-am'. >make[4]: Nothing to be done for `install-data-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/NcRNA' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins/NcRNA' >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins' >make[4]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins' >make[4]: Nothing to be done for `install-exec-am'. >make[4]: Nothing to be done for `install-data-am'. >make[4]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins' >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src/SensorPlugins' >make[1]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/src' >Making install in plugins >make[1]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/plugins' >make[2]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/plugins' >make[2]: Nothing to be done for `install-exec-am'. >make[2]: Nothing to be done for `install-data-am'. >make[2]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/plugins' >make[1]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6/plugins' >make[1]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6' >make[2]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6' >make[2]: Nothing to be done for `install-exec-am'. >make install-data-hook >make[3]: Entering directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6' >/usr/bin/install -c -d /var/tmp/portage/sci-biology/eugene-3.6/image///usr/share/eugene >/usr/bin/install -c -d /var/tmp/portage/sci-biology/eugene-3.6/image///usr/share/eugene/web >/usr/bin/install -c -d /var/tmp/portage/sci-biology/eugene-3.6/image///usr/share/eugene/web/Style >/usr/bin/install -c -d /var/tmp/portage/sci-biology/eugene-3.6/image///usr/share/eugene/web/Javascripts >/usr/bin/install -c -d /var/tmp/portage/sci-biology/eugene-3.6/image///usr/share/eugene/web/Images >/usr/bin/install -c -d /var/tmp/portage/sci-biology/eugene-3.6/image///usr/share/eugene/plugins >/usr/bin/install -c -d /var/tmp/portage/sci-biology/eugene-3.6/image///usr/share/eugene/cfg >/usr/bin/install -c -d /var/tmp/portage/sci-biology/eugene-3.6/image///usr/share/eugene/models >/usr/bin/install -c -d /var/tmp/portage/sci-biology/eugene-3.6/image///usr/share/eugene/models/WAM >/usr/bin/install -c -d /var/tmp/portage/sci-biology/eugene-3.6/image///usr/share/eugene/Procedures >/usr/bin/install -c -d /var/tmp/portage/sci-biology/eugene-3.6/image///usr/share/eugene/Procedures/Eval >/usr/bin/install -c -d /var/tmp/portage/sci-biology/eugene-3.6/image///usr/share/eugene/Procedures/Get >/usr/bin/install -c -m 644 ./models/*.dist /var/tmp/portage/sci-biology/eugene-3.6/image///usr/share/eugene/models >/usr/bin/install -c -m 644 ./models/*.mat /var/tmp/portage/sci-biology/eugene-3.6/image///usr/share/eugene/models >/usr/bin/install -c -m 644 ./models/*.bin /var/tmp/portage/sci-biology/eugene-3.6/image///usr/share/eugene/models >/usr/bin/install -c -m 644 ./models/BLOSUM* /var/tmp/portage/sci-biology/eugene-3.6/image///usr/share/eugene/models >/usr/bin/install -c -m 644 ./models/WAM/WAM* /var/tmp/portage/sci-biology/eugene-3.6/image///usr/share/eugene/models/WAM >/usr/bin/install -c -m 644 ./web/Style/eugene.css /var/tmp/portage/sci-biology/eugene-3.6/image///usr/share/eugene/web/Style >/usr/bin/install -c -m 644 ./web/Javascripts/diap.js /var/tmp/portage/sci-biology/eugene-3.6/image///usr/share/eugene/web/Javascripts >/usr/bin/install -c -m 644 ./web/Images/*jpg /var/tmp/portage/sci-biology/eugene-3.6/image///usr/share/eugene/web/Images >/usr/bin/install -c -m 644 ./cfg/*.obo /var/tmp/portage/sci-biology/eugene-3.6/image///usr/share/eugene/cfg >/usr/bin/install -c -m 644 ./cfg/*.par /var/tmp/portage/sci-biology/eugene-3.6/image///usr/share/eugene/cfg >/usr/bin/install -c src/SensorPlugins/*/*.so /var/tmp/portage/sci-biology/eugene-3.6/image///usr/share/eugene/plugins >/usr/bin/install -c ./Procedures/Eval/egn_* /var/tmp/portage/sci-biology/eugene-3.6/image///usr/share/eugene/Procedures/Eval >/usr/bin/install -c ./Procedures/Get/egn_* /var/tmp/portage/sci-biology/eugene-3.6/image///usr/share/eugene/Procedures/Get >make[3]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6' >make[2]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6' >make[1]: Leaving directory `/var/tmp/portage/sci-biology/eugene-3.6/work/eugene-3.6' >>>> Completed installing eugene-3.6 into /var/tmp/portage/sci-biology/eugene-3.6/image/ > > * Tinderbox QA Warning! ELF files in /usr/share > TYPE FILE >ET_DYN /var/tmp/portage/sci-biology/eugene-3.6/image//usr/share/eugene/plugins/Sensor.Riken.so >ET_DYN /var/tmp/portage/sci-biology/eugene-3.6/image//usr/share/eugene/plugins/Sensor.NStart.so >ET_DYN /var/tmp/portage/sci-biology/eugene-3.6/image//usr/share/eugene/plugins/Sensor.Transcript.so >ET_DYN /var/tmp/portage/sci-biology/eugene-3.6/image//usr/share/eugene/plugins/Sensor.FrameShift.so >ET_DYN /var/tmp/portage/sci-biology/eugene-3.6/image//usr/share/eugene/plugins/Sensor.Tester.so >ET_DYN /var/tmp/portage/sci-biology/eugene-3.6/image//usr/share/eugene/plugins/Sensor.PepSignal.so >ET_DYN /var/tmp/portage/sci-biology/eugene-3.6/image//usr/share/eugene/plugins/Sensor.Homology.so >ET_DYN /var/tmp/portage/sci-biology/eugene-3.6/image//usr/share/eugene/plugins/Sensor.NG2.so >ET_DYN /var/tmp/portage/sci-biology/eugene-3.6/image//usr/share/eugene/plugins/Sensor.Est.so >ET_DYN /var/tmp/portage/sci-biology/eugene-3.6/image//usr/share/eugene/plugins/Sensor.MarkovIMM.so >ET_DYN /var/tmp/portage/sci-biology/eugene-3.6/image//usr/share/eugene/plugins/Sensor.MarkovProt.so >ET_DYN /var/tmp/portage/sci-biology/eugene-3.6/image//usr/share/eugene/plugins/Sensor.Plotter.so >ET_DYN /var/tmp/portage/sci-biology/eugene-3.6/image//usr/share/eugene/plugins/Sensor.GSplicer.so >ET_DYN /var/tmp/portage/sci-biology/eugene-3.6/image//usr/share/eugene/plugins/Sensor.IfElse.so >ET_DYN /var/tmp/portage/sci-biology/eugene-3.6/image//usr/share/eugene/plugins/Sensor.SpliceWAM.so >ET_DYN /var/tmp/portage/sci-biology/eugene-3.6/image//usr/share/eugene/plugins/Sensor.NcRNA.so >ET_DYN /var/tmp/portage/sci-biology/eugene-3.6/image//usr/share/eugene/plugins/Sensor.QualData.so >ET_DYN /var/tmp/portage/sci-biology/eugene-3.6/image//usr/share/eugene/plugins/Sensor.GCPlot.so >ET_DYN /var/tmp/portage/sci-biology/eugene-3.6/image//usr/share/eugene/plugins/Sensor.BlastX.so >ET_DYN /var/tmp/portage/sci-biology/eugene-3.6/image//usr/share/eugene/plugins/Sensor.GFF.so >ET_DYN /var/tmp/portage/sci-biology/eugene-3.6/image//usr/share/eugene/plugins/Sensor.PatConst.so >ET_DYN /var/tmp/portage/sci-biology/eugene-3.6/image//usr/share/eugene/plugins/Sensor.StartWAM.so >ET_DYN /var/tmp/portage/sci-biology/eugene-3.6/image//usr/share/eugene/plugins/Sensor.AnnotaStruct.so >ET_DYN /var/tmp/portage/sci-biology/eugene-3.6/image//usr/share/eugene/plugins/Sensor.MarkovConst.so >ET_DYN /var/tmp/portage/sci-biology/eugene-3.6/image//usr/share/eugene/plugins/Sensor.NStretch.so >ET_DYN /var/tmp/portage/sci-biology/eugene-3.6/image//usr/share/eugene/plugins/Sensor.SMachine.so >ET_DYN /var/tmp/portage/sci-biology/eugene-3.6/image//usr/share/eugene/plugins/Sensor.EuStop.so >ET_DYN /var/tmp/portage/sci-biology/eugene-3.6/image//usr/share/eugene/plugins/Sensor.Repeat.so >ET_DYN /var/tmp/portage/sci-biology/eugene-3.6/image//usr/share/eugene/plugins/Sensor.SPred.so > * Tinderbox QA Warning (end)! ELF files in /usr/share >strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment > usr/share/eugene/plugins/Sensor.Riken.so > usr/share/eugene/plugins/Sensor.NStart.so > usr/share/eugene/plugins/Sensor.Transcript.so > usr/share/eugene/plugins/Sensor.FrameShift.so > usr/share/eugene/plugins/Sensor.Tester.so > usr/share/eugene/plugins/Sensor.PepSignal.so > usr/share/eugene/plugins/Sensor.Homology.so > usr/share/eugene/plugins/Sensor.NG2.so > usr/share/eugene/plugins/Sensor.Est.so > usr/share/eugene/plugins/Sensor.MarkovIMM.so > usr/share/eugene/plugins/Sensor.MarkovProt.so > usr/share/eugene/plugins/Sensor.Plotter.so > usr/share/eugene/plugins/Sensor.GSplicer.so > usr/share/eugene/plugins/Sensor.IfElse.so > usr/share/eugene/plugins/Sensor.SpliceWAM.so > usr/share/eugene/plugins/Sensor.NcRNA.so > usr/share/eugene/plugins/Sensor.QualData.so > usr/share/eugene/plugins/Sensor.GCPlot.so > usr/share/eugene/plugins/Sensor.BlastX.so > usr/share/eugene/plugins/Sensor.GFF.so > usr/share/eugene/plugins/Sensor.PatConst.so > usr/share/eugene/plugins/Sensor.StartWAM.so > usr/share/eugene/plugins/Sensor.AnnotaStruct.so > usr/share/eugene/plugins/Sensor.MarkovConst.so > usr/share/eugene/plugins/Sensor.NStretch.so > usr/share/eugene/plugins/Sensor.SMachine.so > usr/share/eugene/plugins/Sensor.EuStop.so > usr/share/eugene/plugins/Sensor.Repeat.so > usr/share/eugene/plugins/Sensor.SPred.so > usr/bin/eugene > usr/bin/egn_WAMbuilder > usr/bin/egn_TrainIMM > usr/bin/egn_buildMarkovProt > > * QA Notice: Package has poor programming practices which may compile > * fine but exhibit random runtime failures. > * /usr/include/bits/string3.h:107:63: warning: call to char* __builtin___strcpy_chk(char*, const char*, unsigned int) will always overflow destination buffer > * /usr/include/bits/string3.h:107:63: warning: call to char* __builtin___strcpy_chk(char*, const char*, unsigned int) will always overflow destination buffer > * /usr/include/bits/string3.h:107:63: warning: call to char* __builtin___strcpy_chk(char*, const char*, unsigned int) will always overflow destination buffer > * /usr/include/bits/string3.h:107:63: warning: call to char* __builtin___strcpy_chk(char*, const char*, unsigned int) will always overflow destination buffer > * /usr/include/bits/string3.h:107:63: warning: call to char* __builtin___strcpy_chk(char*, const char*, unsigned int) will always overflow destination buffer > * /usr/include/bits/string3.h:107:63: warning: call to char* __builtin___strcpy_chk(char*, const char*, unsigned int) will always overflow destination buffer > * /usr/include/bits/string3.h:107:63: warning: call to char* __builtin___strcpy_chk(char*, const char*, unsigned int) will always overflow destination buffer > * /usr/include/bits/string3.h:107:63: warning: call to char* __builtin___strcpy_chk(char*, const char*, unsigned int) will always overflow destination buffer > * /usr/include/bits/string3.h:107:63: warning: call to char* __builtin___strcpy_chk(char*, const char*, unsigned int) will always overflow destination buffer > * /usr/include/bits/string3.h:107:63: warning: call to char* __builtin___strcpy_chk(char*, const char*, unsigned int) will always overflow destination buffer > > * Please do not file a Gentoo bug and instead report the above QA > * issues directly to the upstream developers of this software. > * Homepage: http://www.inra.fr/mia/T/EuGene/
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bug 336607
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