Build log

dialign-tx-1.0.2:20100909-010335.log (text/plain), 3.37 KB, created by Diego Elio Pettenò (RETIRED) on 2010-09-09 08:11:23 UTC

 * CPV:  sci-biology/dialign-tx-1.0.2
 * REPO: gentoo
 * Maintainer: [e-mail] [e-mail]
 * USE:  elibc_glibc kernel_linux test userland_GNU x86
>>> Unpacking source...
>>> Unpacking DIALIGN-TX_1.0.2.tar.gz to /var/tmp/portage/sci-biology/dialign-tx-1.0.2/work
>>> Source unpacked in /var/tmp/portage/sci-biology/dialign-tx-1.0.2/work
>>> Preparing source in /var/tmp/portage/sci-biology/dialign-tx-1.0.2/work/DIALIGN-TX_1.0.2 ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-biology/dialign-tx-1.0.2/work/DIALIGN-TX_1.0.2 ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-biology/dialign-tx-1.0.2/work/DIALIGN-TX_1.0.2 ...
make -j14 -C source clean 
make: Entering directory `/var/tmp/portage/sci-biology/dialign-tx-1.0.2/work/DIALIGN-TX_1.0.2/source'
rm -rf *.o *rtl *jump *addre* *cfg *life *reg *reload *flow* *stack  museq dialign-tx
make: Leaving directory `/var/tmp/portage/sci-biology/dialign-tx-1.0.2/work/DIALIGN-TX_1.0.2/source'
make -j14 -C source 'CPPFLAGS=-O2 -pipe' 
make: Entering directory `/var/tmp/portage/sci-biology/dialign-tx-1.0.2/work/DIALIGN-TX_1.0.2/source'
gcc -O2 -pipe -O2 -pipe  -c -o museq.o museq.c
gcc -O2 -pipe -O2 -pipe  -c -o parameters.o parameters.c
gcc -O2 -pipe -O2 -pipe  -c -o io.o io.c
gcc -O2 -pipe -O2 -pipe  -c -o diag.o diag.c
gcc -O2 -pipe -O2 -pipe  -c -o alig.o alig.c
gcc -O2 -pipe -O2 -pipe  -c -o assemble.o assemble.c
gcc -O2 -pipe -O2 -pipe  -c -o prob.o prob.c
gcc -O2 -pipe -O2 -pipe  -c -o orf.o orf.c
gcc -O2 -pipe -O2 -pipe  -c -o translate.o translate.c
io.c: In function ‘read_anchors’:
io.c:535:3: warning: format ‘%li’ expects type ‘long int *’, but argument 3 has type ‘int *’
io.c:535:3: warning: format ‘%li’ expects type ‘long int *’, but argument 4 has type ‘int *’
io.c:535:3: warning: format ‘%li’ expects type ‘long int *’, but argument 5 has type ‘int *’
io.c:535:3: warning: format ‘%li’ expects type ‘long int *’, but argument 6 has type ‘int *’
io.c:535:3: warning: format ‘%li’ expects type ‘long int *’, but argument 7 has type ‘int *’
io.c: In function ‘read_diag_prob_dist’:
io.c:371:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result
io.c: In function ‘read_scr_matrix’:
io.c:270:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result
io.c:282:11: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result
rm -f ./museq
gcc -o ./museq \
./museq.o ./parameters.o ./io.o ./diag.o ./alig.o ./assemble.o ./prob.o ./orf.o ./translate.o  \
-pipe -Wall -lm 
mv museq dialign-tx
make: Leaving directory `/var/tmp/portage/sci-biology/dialign-tx-1.0.2/work/DIALIGN-TX_1.0.2/source'
>>> Source compiled.
>>> Test phase [none]: sci-biology/dialign-tx-1.0.2

>>> Install dialign-tx-1.0.2 into /var/tmp/portage/sci-biology/dialign-tx-1.0.2/image/ category sci-biology
>>> Completed installing dialign-tx-1.0.2 into /var/tmp/portage/sci-biology/dialign-tx-1.0.2/image/

strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment
   usr/bin/dialign-tx

 * QA Notice: Files built without respecting LDFLAGS have been detected
 *  Please include the following list of files in your report:
 * /usr/bin/dialign-tx

 * The configuration directory is
 * /usr/lib/dialign-tx/conf
 * You will need to pass this to dialign-tx on every run.