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Gentoo's Bugzilla – Attachment 245973 Details for
Bug 335952
sci-biology/kalign does not respect LDFLAGS
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Build log
kalign-2.03:20100904-105546.log (text/plain), 4.02 KB, created by
Diego Elio Pettenò (RETIRED)
on 2010-09-04 16:49:40 UTC
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Description:
Build log
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MIME Type:
Creator:
Diego Elio Pettenò (RETIRED)
Created:
2010-09-04 16:49:40 UTC
Size:
4.02 KB
patch
obsolete
> * CPV: sci-biology/kalign-2.03 > * REPO: gentoo > * USE: elibc_glibc kernel_linux test userland_GNU x86 >>>> Unpacking source... >>>> Unpacking kalign_2.03.orig.tar.gz to /var/tmp/portage/sci-biology/kalign-2.03/work >>>> Source unpacked in /var/tmp/portage/sci-biology/kalign-2.03/work >>>> Compiling source in /var/tmp/portage/sci-biology/kalign-2.03/work/kalign ... >./configure --prefix=/usr --build=i686-pc-linux-gnu --host=i686-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib >configure: loading site script /usr/share/config.site >configure: loading site script /usr/share/crossdev/include/site/linux >checking for i686-pc-linux-gnu-gcc... i686-pc-linux-gnu-gcc >checking for C compiler default output file name... a.out >checking whether the C compiler works... yes >checking whether we are cross compiling... no >checking for suffix of executables... >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether i686-pc-linux-gnu-gcc accepts -g... yes >checking for i686-pc-linux-gnu-gcc option to accept ANSI C... none needed >checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E >checking for egrep... grep -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking for stdlib.h... (cached) yes >checking for string.h... (cached) yes >checking for unistd.h... (cached) yes >checking getopt.h usability... yes >checking getopt.h presence... yes >checking for getopt.h... yes >checking for an ANSI C-conforming const... yes >checking for stdlib.h... (cached) yes >checking for GNU libc compatible malloc... yes >checking for stdlib.h... (cached) yes >checking for GNU libc compatible realloc... yes >configure: creating ./config.status >config.status: creating Makefile >config.status: creating config.h >make -j14 >gcc -O2 -pipe -O3 -Wall -c kalign2_distance_calculation.c >gcc -O2 -pipe -O3 -Wall -c kalign2_dp.c >gcc -O2 -pipe -O3 -Wall -c kalign2_input.c >gcc -O2 -pipe -O3 -Wall -c kalign2_main.c >gcc -O2 -pipe -O3 -Wall -c kalign2_mem.c >gcc -O2 -pipe -O3 -Wall -c kalign2_inferface.c >gcc -O2 -pipe -O3 -Wall -c kalign2_misc.c >gcc -O2 -pipe -O3 -Wall -c kalign2_tree.c >gcc -O2 -pipe -O3 -Wall -c kalign2_profile.c >gcc -O2 -pipe -O3 -Wall -c kalign2_alignment_types.c >gcc -O2 -pipe -O3 -Wall -c kalign2_feature.c >gcc -O2 -pipe -O3 -Wall -c kalign2_hirschberg.c >gcc -O2 -pipe -O3 -Wall -c kalign2_advanced_gaps.c >gcc -O2 -pipe -O3 -Wall -c kalign2_hirschberg_dna.c >kalign2_input.c: In function âget_input_into_stringâ: >kalign2_input.c:488:8: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result >gcc -O2 -pipe -O3 -Wall -c kalign2_output.c >gcc -O2 -pipe -O3 -Wall -c kalign2_string_matching.c >gcc -O2 -pipe -O3 -Wall -c kalign2_profile_alignment.c >gcc -O2 -pipe -O3 -Wall kalign2_distance_calculation.o kalign2_dp.o kalign2_input.o kalign2_main.o kalign2_mem.o kalign2_inferface.o kalign2_misc.o kalign2_tree.o kalign2_profile.o kalign2_alignment_types.o kalign2_feature.o kalign2_hirschberg.o kalign2_advanced_gaps.o kalign2_hirschberg_dna.o kalign2_output.o kalign2_string_matching.o kalign2_profile_alignment.o -o kalign >>>> Source compiled. >>>> Test phase [none]: sci-biology/kalign-2.03 > >>>> Install kalign-2.03 into /var/tmp/portage/sci-biology/kalign-2.03/image/ category sci-biology >>>> Completed installing kalign-2.03 into /var/tmp/portage/sci-biology/kalign-2.03/image/ > >strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment > usr/bin/kalign > > * QA Notice: Files built without respecting LDFLAGS have been detected > * Please include the following list of files in your report: > * /usr/bin/kalign > > * Gentoo contact information ... >herds: > sci-biology >maintainers: > weaver@gentoo.org >
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bug 335952
: 245973 |
245994