* CPV:  sci-biology/kalign-2.03
 * REPO: gentoo
 * USE:  elibc_glibc kernel_linux test userland_GNU x86
>>> Unpacking source...
>>> Unpacking kalign_2.03.orig.tar.gz to /var/tmp/portage/sci-biology/kalign-2.03/work
>>> Source unpacked in /var/tmp/portage/sci-biology/kalign-2.03/work
>>> Compiling source in /var/tmp/portage/sci-biology/kalign-2.03/work/kalign ...
./configure --prefix=/usr --build=i686-pc-linux-gnu --host=i686-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib
configure: loading site script /usr/share/config.site
configure: loading site script /usr/share/crossdev/include/site/linux
checking for i686-pc-linux-gnu-gcc... i686-pc-linux-gnu-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether i686-pc-linux-gnu-gcc accepts -g... yes
checking for i686-pc-linux-gnu-gcc option to accept ANSI C... none needed
checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking getopt.h usability... yes
checking getopt.h presence... yes
checking for getopt.h... yes
checking for an ANSI C-conforming const... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible realloc... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
make -j14 
gcc   -O2 -pipe -O3  -Wall  -c kalign2_distance_calculation.c
gcc   -O2 -pipe -O3  -Wall  -c kalign2_dp.c
gcc   -O2 -pipe -O3  -Wall  -c kalign2_input.c
gcc   -O2 -pipe -O3  -Wall  -c kalign2_main.c
gcc   -O2 -pipe -O3  -Wall  -c kalign2_mem.c
gcc   -O2 -pipe -O3  -Wall  -c kalign2_inferface.c
gcc   -O2 -pipe -O3  -Wall  -c kalign2_misc.c
gcc   -O2 -pipe -O3  -Wall  -c kalign2_tree.c
gcc   -O2 -pipe -O3  -Wall  -c kalign2_profile.c
gcc   -O2 -pipe -O3  -Wall  -c kalign2_alignment_types.c
gcc   -O2 -pipe -O3  -Wall  -c kalign2_feature.c
gcc   -O2 -pipe -O3  -Wall  -c kalign2_hirschberg.c
gcc   -O2 -pipe -O3  -Wall  -c kalign2_advanced_gaps.c
gcc   -O2 -pipe -O3  -Wall  -c kalign2_hirschberg_dna.c
kalign2_input.c: In function ‘get_input_into_string’:
kalign2_input.c:488:8: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result
gcc   -O2 -pipe -O3  -Wall  -c kalign2_output.c
gcc   -O2 -pipe -O3  -Wall  -c kalign2_string_matching.c
gcc   -O2 -pipe -O3  -Wall  -c kalign2_profile_alignment.c
gcc   -O2 -pipe -O3  -Wall  kalign2_distance_calculation.o kalign2_dp.o kalign2_input.o kalign2_main.o kalign2_mem.o kalign2_inferface.o kalign2_misc.o kalign2_tree.o kalign2_profile.o kalign2_alignment_types.o kalign2_feature.o kalign2_hirschberg.o kalign2_advanced_gaps.o kalign2_hirschberg_dna.o kalign2_output.o kalign2_string_matching.o kalign2_profile_alignment.o -o kalign
>>> Source compiled.
>>> Test phase [none]: sci-biology/kalign-2.03

>>> Install kalign-2.03 into /var/tmp/portage/sci-biology/kalign-2.03/image/ category sci-biology
>>> Completed installing kalign-2.03 into /var/tmp/portage/sci-biology/kalign-2.03/image/

strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment
   usr/bin/kalign

 * QA Notice: Files built without respecting LDFLAGS have been detected
 *  Please include the following list of files in your report:
 * /usr/bin/kalign

 * Gentoo contact information ...
herds:
    sci-biology
maintainers:
    weaver@gentoo.org