Build log

raxml-7.2.5:20100901-225228.log (text/plain), 13.90 KB, created by Diego Elio Pettenò (RETIRED) on 2010-09-02 01:46:52 UTC

 * CPV:  sci-biology/raxml-7.2.5
 * REPO: gentoo
 * USE:  elibc_glibc kernel_linux test threads userland_GNU x86
>>> Unpacking source...
>>> Unpacking RAxML-7.2.5.tar.bz2 to /var/tmp/portage/sci-biology/raxml-7.2.5/work
>>> Source unpacked in /var/tmp/portage/sci-biology/raxml-7.2.5/work
>>> Preparing source in /var/tmp/portage/sci-biology/raxml-7.2.5/work/RAxML-7.2.5 ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-biology/raxml-7.2.5/work/RAxML-7.2.5 ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-biology/raxml-7.2.5/work/RAxML-7.2.5 ...
make -j14 -f Makefile.gcc 
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2    -c -o axml.o axml.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2    -c -o raxmlParsimony.o raxmlParsimony.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2    -c -o optimizeModel.o optimizeModel.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2    -c -o multiple.o multiple.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2    -c -o searchAlgo.o searchAlgo.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2    -c -o topologies.o topologies.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2    -c -o parsePartitions.o parsePartitions.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2    -c -o treeIO.o treeIO.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2    -c -o models.o models.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2    -c -o bipartitionList.o bipartitionList.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2    -c -o rapidBootstrap.o rapidBootstrap.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2    -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2    -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2    -c -o newviewGenericSpecial.o newviewGenericSpecial.c
axml.c: In function ‘get_args’:
axml.c:4943:10: warning: ignoring return value of ‘getcwd’, declared with attribute warn_unused_result
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2    -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2    -c -o classify.o classify.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2    -c -o mesh.o mesh.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2    -c -o fastDNAparsimony.o fastDNAparsimony.c
i686-pc-linux-gnu-gcc  -o raxmlHPC axml.o raxmlParsimony.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o   classify.o mesh.o fastDNAparsimony.o -lm 
make -j14 -f Makefile.SSE3.gcc clean 
rm -f *.o raxmlHPC-SSE3
make -j14 -f Makefile.SSE3.gcc 
i686-pc-linux-gnu-gcc  -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops    -c -o axml.o axml.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops    -c -o raxmlParsimony.o raxmlParsimony.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops    -c -o optimizeModel.o optimizeModel.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops    -c -o multiple.o multiple.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops    -c -o searchAlgo.o searchAlgo.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops    -c -o topologies.o topologies.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops    -c -o parsePartitions.o parsePartitions.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops    -c -o treeIO.o treeIO.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops    -c -o models.o models.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops    -c -o bipartitionList.o bipartitionList.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops    -c -o rapidBootstrap.o rapidBootstrap.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops    -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops    -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops    -c -o newviewGenericSpecial.o newviewGenericSpecial.c
axml.c: In function ‘get_args’:
axml.c:4943:10: warning: ignoring return value of ‘getcwd’, declared with attribute warn_unused_result
i686-pc-linux-gnu-gcc  -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops    -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops    -c -o classify.o classify.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops    -c -o mesh.o mesh.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops    -c -o fastDNAparsimony.o fastDNAparsimony.c
i686-pc-linux-gnu-gcc  -o raxmlHPC-SSE3 axml.o raxmlParsimony.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o   classify.o mesh.o fastDNAparsimony.o -lm 
make -j14 -f Makefile.PTHREADS.gcc clean 
rm -f *.o raxmlHPC-PTHREADS
make -j14 -f Makefile.PTHREADS.gcc 
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2  -D_USE_PTHREADS    -c -o axml.o axml.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2  -D_USE_PTHREADS    -c -o raxmlParsimony.o raxmlParsimony.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2  -D_USE_PTHREADS    -c -o optimizeModel.o optimizeModel.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2  -D_USE_PTHREADS    -c -o multiple.o multiple.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2  -D_USE_PTHREADS    -c -o searchAlgo.o searchAlgo.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2  -D_USE_PTHREADS    -c -o topologies.o topologies.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2  -D_USE_PTHREADS    -c -o parsePartitions.o parsePartitions.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2  -D_USE_PTHREADS    -c -o treeIO.o treeIO.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2  -D_USE_PTHREADS    -c -o models.o models.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2  -D_USE_PTHREADS    -c -o bipartitionList.o bipartitionList.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2  -D_USE_PTHREADS    -c -o rapidBootstrap.o rapidBootstrap.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2  -D_USE_PTHREADS    -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2  -D_USE_PTHREADS    -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2  -D_USE_PTHREADS    -c -o newviewGenericSpecial.o newviewGenericSpecial.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2  -D_USE_PTHREADS    -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c
axml.c: In function ‘get_args’:
axml.c:4943:10: warning: ignoring return value of ‘getcwd’, declared with attribute warn_unused_result
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2  -D_USE_PTHREADS    -c -o classify.o classify.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2  -D_USE_PTHREADS    -c -o mesh.o mesh.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2  -D_USE_PTHREADS    -c -o fastDNAparsimony.o fastDNAparsimony.c
i686-pc-linux-gnu-gcc  -o raxmlHPC-PTHREADS axml.o raxmlParsimony.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o   classify.o mesh.o fastDNAparsimony.o -lm -pthread 
make -j14 -f Makefile.SSE3.PTHREADS.gcc clean 
rm -f *.o raxmlHPC-PTHREADS-SSE3
make -j14 -f Makefile.SSE3.PTHREADS.gcc 
i686-pc-linux-gnu-gcc  -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops     -c -o axml.o axml.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops     -c -o raxmlParsimony.o raxmlParsimony.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops     -c -o optimizeModel.o optimizeModel.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops     -c -o multiple.o multiple.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops     -c -o searchAlgo.o searchAlgo.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops     -c -o topologies.o topologies.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops     -c -o parsePartitions.o parsePartitions.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops     -c -o treeIO.o treeIO.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops     -c -o models.o models.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops     -c -o bipartitionList.o bipartitionList.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops     -c -o rapidBootstrap.o rapidBootstrap.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops     -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops     -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops     -c -o newviewGenericSpecial.o newviewGenericSpecial.c
axml.c: In function ‘get_args’:
axml.c:4943:10: warning: ignoring return value of ‘getcwd’, declared with attribute warn_unused_result
i686-pc-linux-gnu-gcc  -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops     -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops     -c -o classify.o classify.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops     -c -o mesh.o mesh.c
i686-pc-linux-gnu-gcc  -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops     -c -o fastDNAparsimony.o fastDNAparsimony.c
i686-pc-linux-gnu-gcc  -o raxmlHPC-PTHREADS-SSE3 axml.o raxmlParsimony.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o   classify.o mesh.o fastDNAparsimony.o -lm -pthread  
>>> Source compiled.
>>> Test phase [none]: sci-biology/raxml-7.2.5

>>> Install raxml-7.2.5 into /var/tmp/portage/sci-biology/raxml-7.2.5/image/ category sci-biology
>>> Completed installing raxml-7.2.5 into /var/tmp/portage/sci-biology/raxml-7.2.5/image/

strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment
   usr/bin/raxmlHPC-PTHREADS
   usr/bin/raxmlHPC-SSE3
   usr/bin/raxmlHPC-PTHREADS-SSE3
   usr/bin/raxmlHPC

 * QA Notice: Files built without respecting LDFLAGS have been detected
 *  Please include the following list of files in your report:
 * /usr/bin/raxmlHPC-PTHREADS
 * /usr/bin/raxmlHPC-SSE3
 * /usr/bin/raxmlHPC-PTHREADS-SSE3
 * /usr/bin/raxmlHPC

 * Gentoo contact information ...
herds:
    sci-biology
maintainers:
    [e-mail]