* CPV: sci-biology/raxml-7.2.5 * REPO: gentoo * USE: elibc_glibc kernel_linux test threads userland_GNU x86 >>> Unpacking source... >>> Unpacking RAxML-7.2.5.tar.bz2 to /var/tmp/portage/sci-biology/raxml-7.2.5/work >>> Source unpacked in /var/tmp/portage/sci-biology/raxml-7.2.5/work >>> Preparing source in /var/tmp/portage/sci-biology/raxml-7.2.5/work/RAxML-7.2.5 ... >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-biology/raxml-7.2.5/work/RAxML-7.2.5 ... >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-biology/raxml-7.2.5/work/RAxML-7.2.5 ... make -j14 -f Makefile.gcc i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -c -o axml.o axml.c i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -c -o raxmlParsimony.o raxmlParsimony.c i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -c -o optimizeModel.o optimizeModel.c i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -c -o multiple.o multiple.c i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -c -o searchAlgo.o searchAlgo.c i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -c -o topologies.o topologies.c i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -c -o parsePartitions.o parsePartitions.c i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -c -o treeIO.o treeIO.c i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -c -o models.o models.c i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -c -o bipartitionList.o bipartitionList.c i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -c -o rapidBootstrap.o rapidBootstrap.c i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -c -o newviewGenericSpecial.o newviewGenericSpecial.c axml.c: In function ‘get_args’: axml.c:4943:10: warning: ignoring return value of ‘getcwd’, declared with attribute warn_unused_result i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -c -o classify.o classify.c i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -c -o mesh.o mesh.c i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -c -o fastDNAparsimony.o fastDNAparsimony.c i686-pc-linux-gnu-gcc -o raxmlHPC axml.o raxmlParsimony.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o classify.o mesh.o fastDNAparsimony.o -lm make -j14 -f Makefile.SSE3.gcc clean rm -f *.o raxmlHPC-SSE3 make -j14 -f Makefile.SSE3.gcc i686-pc-linux-gnu-gcc -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops -c -o axml.o axml.c i686-pc-linux-gnu-gcc -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops -c -o raxmlParsimony.o raxmlParsimony.c i686-pc-linux-gnu-gcc -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops -c -o optimizeModel.o optimizeModel.c i686-pc-linux-gnu-gcc -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops -c -o multiple.o multiple.c i686-pc-linux-gnu-gcc -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops -c -o searchAlgo.o searchAlgo.c i686-pc-linux-gnu-gcc -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops -c -o topologies.o topologies.c i686-pc-linux-gnu-gcc -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops -c -o parsePartitions.o parsePartitions.c i686-pc-linux-gnu-gcc -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops -c -o treeIO.o treeIO.c i686-pc-linux-gnu-gcc -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops -c -o models.o models.c i686-pc-linux-gnu-gcc -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops -c -o bipartitionList.o bipartitionList.c i686-pc-linux-gnu-gcc -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops -c -o rapidBootstrap.o rapidBootstrap.c i686-pc-linux-gnu-gcc -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c i686-pc-linux-gnu-gcc -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c i686-pc-linux-gnu-gcc -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops -c -o newviewGenericSpecial.o newviewGenericSpecial.c axml.c: In function ‘get_args’: axml.c:4943:10: warning: ignoring return value of ‘getcwd’, declared with attribute warn_unused_result i686-pc-linux-gnu-gcc -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c i686-pc-linux-gnu-gcc -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops -c -o classify.o classify.c i686-pc-linux-gnu-gcc -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops -c -o mesh.o mesh.c i686-pc-linux-gnu-gcc -O2 -pipe -D__SIM_SSE3 -msse3 -D_GNU_SOURCE -O2 -fomit-frame-pointer -funroll-loops -c -o fastDNAparsimony.o fastDNAparsimony.c i686-pc-linux-gnu-gcc -o raxmlHPC-SSE3 axml.o raxmlParsimony.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o classify.o mesh.o fastDNAparsimony.o -lm make -j14 -f Makefile.PTHREADS.gcc clean rm -f *.o raxmlHPC-PTHREADS make -j14 -f Makefile.PTHREADS.gcc i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -c -o axml.o axml.c i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -c -o raxmlParsimony.o raxmlParsimony.c i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -c -o optimizeModel.o optimizeModel.c i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -c -o multiple.o multiple.c i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -c -o searchAlgo.o searchAlgo.c i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -c -o topologies.o topologies.c i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -c -o parsePartitions.o parsePartitions.c i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -c -o treeIO.o treeIO.c i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -c -o models.o models.c i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -c -o bipartitionList.o bipartitionList.c i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -c -o rapidBootstrap.o rapidBootstrap.c i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -c -o newviewGenericSpecial.o newviewGenericSpecial.c i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c axml.c: In function ‘get_args’: axml.c:4943:10: warning: ignoring return value of ‘getcwd’, declared with attribute warn_unused_result i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -c -o classify.o classify.c i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -c -o mesh.o mesh.c i686-pc-linux-gnu-gcc -O2 -pipe -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -D_USE_PTHREADS -c -o fastDNAparsimony.o fastDNAparsimony.c i686-pc-linux-gnu-gcc -o raxmlHPC-PTHREADS axml.o raxmlParsimony.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o classify.o mesh.o fastDNAparsimony.o -lm -pthread make -j14 -f Makefile.SSE3.PTHREADS.gcc clean rm -f *.o raxmlHPC-PTHREADS-SSE3 make -j14 -f Makefile.SSE3.PTHREADS.gcc i686-pc-linux-gnu-gcc -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops -c -o axml.o axml.c i686-pc-linux-gnu-gcc -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops -c -o raxmlParsimony.o raxmlParsimony.c i686-pc-linux-gnu-gcc -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops -c -o optimizeModel.o optimizeModel.c i686-pc-linux-gnu-gcc -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops -c -o multiple.o multiple.c i686-pc-linux-gnu-gcc -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops -c -o searchAlgo.o searchAlgo.c i686-pc-linux-gnu-gcc -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops -c -o topologies.o topologies.c i686-pc-linux-gnu-gcc -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops -c -o parsePartitions.o parsePartitions.c i686-pc-linux-gnu-gcc -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops -c -o treeIO.o treeIO.c i686-pc-linux-gnu-gcc -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops -c -o models.o models.c i686-pc-linux-gnu-gcc -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops -c -o bipartitionList.o bipartitionList.c i686-pc-linux-gnu-gcc -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops -c -o rapidBootstrap.o rapidBootstrap.c i686-pc-linux-gnu-gcc -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c i686-pc-linux-gnu-gcc -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c i686-pc-linux-gnu-gcc -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops -c -o newviewGenericSpecial.o newviewGenericSpecial.c axml.c: In function ‘get_args’: axml.c:4943:10: warning: ignoring return value of ‘getcwd’, declared with attribute warn_unused_result i686-pc-linux-gnu-gcc -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops -c -o makenewzGenericSpecial.o makenewzGenericSpecial.c i686-pc-linux-gnu-gcc -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops -c -o classify.o classify.c i686-pc-linux-gnu-gcc -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops -c -o mesh.o mesh.c i686-pc-linux-gnu-gcc -O2 -pipe -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops -c -o fastDNAparsimony.o fastDNAparsimony.c i686-pc-linux-gnu-gcc -o raxmlHPC-PTHREADS-SSE3 axml.o raxmlParsimony.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o classify.o mesh.o fastDNAparsimony.o -lm -pthread >>> Source compiled. >>> Test phase [none]: sci-biology/raxml-7.2.5 >>> Install raxml-7.2.5 into /var/tmp/portage/sci-biology/raxml-7.2.5/image/ category sci-biology >>> Completed installing raxml-7.2.5 into /var/tmp/portage/sci-biology/raxml-7.2.5/image/ strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment usr/bin/raxmlHPC-PTHREADS usr/bin/raxmlHPC-SSE3 usr/bin/raxmlHPC-PTHREADS-SSE3 usr/bin/raxmlHPC  * QA Notice: Files built without respecting LDFLAGS have been detected * Please include the following list of files in your report: * /usr/bin/raxmlHPC-PTHREADS * /usr/bin/raxmlHPC-SSE3 * /usr/bin/raxmlHPC-PTHREADS-SSE3 * /usr/bin/raxmlHPC  * Gentoo contact information ... herds: sci-biology maintainers: weaver@gentoo.org