Attachment 245692 Details for Bug 335608 – Build log

Build log

paml-4.3b:20100901-214541.log (text/plain), 29.16 KB, created by Diego Elio Pettenò (RETIRED) on 2010-09-01 22:10:25 UTC

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Creator: Diego Elio Pettenò (RETIRED)

Created: 2010-09-01 22:10:25 UTC

Size: 29.16 KB

patch

obsolete

> * CPV:  sci-biology/paml-4.3b
> * REPO: gentoo
> * USE:  elibc_glibc kernel_linux test userland_GNU x86
>>>> Unpacking source...
>>>> Unpacking paml4.3b.tar.gz to /var/tmp/portage/sci-biology/paml-4.3b/work
>>>> Source unpacked in /var/tmp/portage/sci-biology/paml-4.3b/work
>>>> Preparing source in /var/tmp/portage/sci-biology/paml-4.3b/work/paml43 ...
>>>> Source prepared.
>>>> Configuring source in /var/tmp/portage/sci-biology/paml-4.3b/work/paml43 ...
>>>> Source configured.
>>>> Compiling source in /var/tmp/portage/sci-biology/paml-4.3b/work/paml43 ...
>make -j14 -f Makefile.UNIX CC=i686-pc-linux-gnu-gcc 'CFLAGS=-O2 -pipe' 
>i686-pc-linux-gnu-gcc -O2 -pipe -c baseml.c
>i686-pc-linux-gnu-gcc -O2 -pipe -c tools.c
>i686-pc-linux-gnu-gcc -O2 -pipe -c codeml.c
>i686-pc-linux-gnu-gcc -O2 -pipe -c basemlg.c
>i686-pc-linux-gnu-gcc -O2 -pipe -c mcmctree.c
>i686-pc-linux-gnu-gcc -O2 -pipe -c pamp.c
>i686-pc-linux-gnu-gcc -O2 -pipe -c evolver.c
>i686-pc-linux-gnu-gcc -O2 -pipe -o chi2 chi2.c -lm 
>chi2.c: In function âmainâ:
>chi2.c:35:16: warning: ignoring return value of âscanfâ, declared with attribute warn_unused_result
>In file included from baseml.c:129:0:
>treesub.c: In function âStepwiseAdditionMPâ:
>treesub.c:3356:6: warning: format â%9ldâ expects type âlong intâ, but argument 2 has type âunsigned intâ
>In file included from codeml.c:216:0:
>treesub.c: In function âStepwiseAdditionMPâ:
>treesub.c:3356:6: warning: format â%9ldâ expects type âlong intâ, but argument 2 has type âunsigned intâ
>treesub.c: In function ârellâ:
>treesub.c:4418:7: warning: format â%luâ expects type âlong unsigned intâ, but argument 2 has type âsize_tâ
>treesub.c: In function ârellâ:
>treesub.c:4418:7: warning: format â%luâ expects type âlong unsigned intâ, but argument 2 has type âsize_tâ
>treesub.c: In function âAncestralJointPPSG2000â:
>treesub.c:5492:7: warning: format â%9luâ expects type âlong unsigned intâ, but argument 2 has type âsize_tâ
>treesub.c:5499:7: warning: format â%9luâ expects type âlong unsigned intâ, but argument 2 has type âsize_tâ
>evolver.c: In function âRell2MLtreeâ:
>evolver.c:1478:13: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>evolver.c:1479:12: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>evolver.c:1481:13: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>evolver.c: In function âCladeSupportâ:
>evolver.c:1400:12: warning: ignoring return value of âscanfâ, declared with attribute warn_unused_result
>evolver.c:1405:10: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>evolver.c:1422:13: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>evolver.c:1441:10: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>evolver.c: In function âCladeProbabilitiesâ:
>evolver.c:1335:11: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c: In function âAncestralJointPPSG2000â:
>treesub.c:5492:7: warning: format â%9luâ expects type âlong unsigned intâ, but argument 2 has type âsize_tâ
>treesub.c:5499:7: warning: format â%9luâ expects type âlong unsigned intâ, but argument 2 has type âsize_tâ
>basemlg.c: In function âreadxâ:
>treesub.c:3080:10: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>evolver.c: In function âSimulateâ:
>evolver.c:894:10: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>evolver.c:894:38: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>evolver.c:899:11: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>evolver.c:900:9: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>evolver.c:902:11: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>evolver.c:903:9: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>evolver.c:915:13: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>evolver.c:915:42: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>evolver.c:939:14: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>evolver.c:940:12: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>evolver.c:945:13: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>evolver.c:946:12: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>evolver.c:953:26: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>evolver.c:954:12: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>evolver.c:965:16: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>evolver.c:965:46: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>evolver.c:967:33: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>evolver.c:967:66: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>evolver.c:968:33: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>evolver.c:968:66: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>evolver.c:974:16: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>evolver.c:974:46: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>evolver.c:976:33: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>evolver.c:976:66: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>evolver.c:1004:16: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>evolver.c:1005:15: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>evolver.c:1010:13: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>evolver.c:1010:44: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>evolver.c:1015:13: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>evolver.c:1016:12: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>evolver.c:1030:13: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>evolver.c:1032:33: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>evolver.c:1033:12: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>evolver.c:1039:33: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c: In function âlfuntdd_SiteClassâ:
>treesub.c:6928:7: warning: format â%luâ expects type âlong unsigned intâ, but argument 2 has type âsize_tâ
>treesub.c:6928:7: warning: format â%luâ expects type âlong unsigned intâ, but argument 3 has type âsize_tâ
>basemlg.c: In function âReadTreeNâ:
>treesub.c:2213:16: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:2245:55: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:2246:55: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:2248:16: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:2305:12: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>treesub.c: In function âGetMemBCâ:
>treesub.c:7552:4: warning: format â%5luâ expects type âlong unsigned intâ, but argument 2 has type âsize_tâ
>treesub.c:7552:4: warning: format â%5luâ expects type âlong unsigned intâ, but argument 3 has type âsize_tâ
>mcmctree.c: In function âDescriptiveStatisticsSimpleâ:
>mcmctree.c:2824:30: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>mcmctree.c:2832:27: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>mcmctree.c:2835:35: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>basemlg.c: In function âReadTreeBâ:
>treesub.c:1956:11: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:1971:21: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>treesub.c: In function âlfuntdd_SiteClassâ:
>treesub.c:6928:7: warning: format â%luâ expects type âlong unsigned intâ, but argument 2 has type âsize_tâ
>treesub.c:6928:7: warning: format â%luâ expects type âlong unsigned intâ, but argument 3 has type âsize_tâ
>evolver.c: In function âGetDaaâ:
>evolver.c:613:13: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c: In function âGetMemBCâ:
>treesub.c:7552:4: warning: format â%5luâ expects type âlong unsigned intâ, but argument 2 has type âsize_tâ
>treesub.c:7552:4: warning: format â%5luâ expects type âlong unsigned intâ, but argument 3 has type âsize_tâ
>evolver.c: In function âTreeDistancesâ:
>evolver.c:422:10: warning: ignoring return value of âscanfâ, declared with attribute warn_unused_result
>evolver.c:425:11: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>evolver.c:434:9: warning: ignoring return value of âscanfâ, declared with attribute warn_unused_result
>evolver.c: In function âTreeDistanceDistributionâ:
>evolver.c:368:10: warning: ignoring return value of âscanfâ, declared with attribute warn_unused_result
>evolver.c:371:11: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>baseml.c: In function âmainâ:
>baseml.c:269:10: warning: format â%9ldâ expects type âlong intâ, but argument 2 has type âunsigned intâ
>baseml.c:270:7: warning: format â%9luâ expects type âlong unsigned intâ, but argument 2 has type âsize_tâ
>baseml.c:270:7: warning: format â%9luâ expects type âlong unsigned intâ, but argument 3 has type âsize_tâ
>baseml.c:271:7: warning: format â%9luâ expects type âlong unsigned intâ, but argument 2 has type âsize_tâ
>baseml.c:271:7: warning: format â%9luâ expects type âlong unsigned intâ, but argument 3 has type âsize_tâ
>evolver.c: In function âLabelCladesâ:
>evolver.c:247:10: warning: ignoring return value of âscanfâ, declared with attribute warn_unused_result
>evolver.c:249:10: warning: ignoring return value of âscanfâ, declared with attribute warn_unused_result
>evolver.c:252:11: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>evolver.c:269:12: warning: ignoring return value of âscanfâ, declared with attribute warn_unused_result
>evolver.c: In function âbetween_f_and_xâ:
>evolver.c:221:12: warning: ignoring return value of âscanfâ, declared with attribute warn_unused_result
>evolver.c:223:12: warning: ignoring return value of âscanfâ, declared with attribute warn_unused_result
>evolver.c:225:23: warning: ignoring return value of âscanfâ, declared with attribute warn_unused_result
>mcmctree.c: In function âInfinitesitesâ:
>mcmctree.c:1208:10: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>mcmctree.c:1210:9: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>mcmctree.c:1219:38: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>evolver.c: In function âmainâ:
>evolver.c:150:15: warning: ignoring return value of âscanfâ, declared with attribute warn_unused_result
>evolver.c:155:63: warning: ignoring return value of âscanfâ, declared with attribute warn_unused_result
>evolver.c:161:18: warning: ignoring return value of âscanfâ, declared with attribute warn_unused_result
>evolver.c:164:19: warning: ignoring return value of âscanfâ, declared with attribute warn_unused_result
>evolver.c:179:22: warning: ignoring return value of âscanfâ, declared with attribute warn_unused_result
>pamp.c: In function âmainâ:
>pamp.c:112:11: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>baseml.c: In function âGetInitialsâ:
>baseml.c:913:10: warning: format â%9luâ expects type âlong unsigned intâ, but argument 2 has type âsize_tâ
>basemlg.c: In function âAllPatternsâ:
>treesub.c:697:9: warning: ignoring return value of âscanfâ, declared with attribute warn_unused_result
>codeml.c: In function âmainâ:
>codeml.c:429:10: warning: format â%9luâ expects type âlong unsigned intâ, but argument 2 has type âsize_tâ
>mcmctree.c: In function âGenerateBlengthGHâ:
>mcmctree.c:911:13: warning: ignoring return value of âsystemâ, declared with attribute warn_unused_result
>codeml.c:493:10: warning: format â%9ldâ expects type âlong intâ, but argument 2 has type âunsigned intâ
>mcmctree.c: In function âReadBlengthGHâ:
>mcmctree.c:782:13: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>mcmctree.c:804:16: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>mcmctree.c:808:16: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>mcmctree.c:810:13: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>basemlg.c: In function âReadSeqâ:
>treesub.c:277:15: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>treesub.c:309:40: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:517:16: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>pamp.c: In function âReadTreeNâ:
>treesub.c:2213:16: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:2245:55: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:2246:55: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:2248:16: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:2305:12: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>basemlg.c: In function âScanFastaFileâ:
>treesub.c:79:16: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>mcmctree.c: In function âReadTreeSeqsâ:
>treesub.c:7152:10: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>evolver.c: In function âReadTreeNâ:
>treesub.c:2213:16: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:2245:55: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:2246:55: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:2248:16: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:2305:12: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>evolver.c: In function âReadTreeBâ:
>treesub.c:1956:11: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:1971:21: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>tools.c: In function âDescriptiveStatisticsâ:
>tools.c:5010:12: warning: ignoring return value of âscanfâ, declared with attribute warn_unused_result
>tools.c:5016:12: warning: ignoring return value of âscanfâ, declared with attribute warn_unused_result
>tools.c:5025:16: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>tools.c:5039:24: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>tools.c:5042:16: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>tools.c:5056:27: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>tools.c:5059:35: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>tools.c:5120:27: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>tools.c:5124:19: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>tools.c:5157:27: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>tools.c:5161:19: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>pamp.c: In function âReadTreeBâ:
>treesub.c:1956:11: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:1971:21: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>codeml.c: In function âGetInitialsâ:
>codeml.c:2209:7: warning: format â%9luâ expects type âlong unsigned intâ, but argument 2 has type âsize_tâ
>tools.c: In function âscanfileâ:
>tools.c:4754:12: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>mcmctree.c: In function âReadTreeNâ:
>treesub.c:2213:16: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:2245:55: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:2246:55: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:2248:16: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:2305:12: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>baseml.c: In function âDatingHeteroDataâ:
>treesub.c:8252:15: warning: ignoring return value of âscanfâ, declared with attribute warn_unused_result
>mcmctree.c: In function âReadTreeBâ:
>treesub.c:1956:11: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:1971:21: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>baseml.c: In function âAdHocRateSmoothingâ:
>treesub.c:7960:19: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:8042:37: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:8133:12: warning: ignoring return value of âscanfâ, declared with attribute warn_unused_result
>pamp.c: In function âAllPatternsâ:
>treesub.c:697:9: warning: ignoring return value of âscanfâ, declared with attribute warn_unused_result
>baseml.c: In function âReadTreeSeqsâ:
>treesub.c:7152:10: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>mcmctree.c: In function âAllPatternsâ:
>treesub.c:697:9: warning: ignoring return value of âscanfâ, declared with attribute warn_unused_result
>codeml.c: In function âPairwiseAArevâ:
>codeml.c:4733:7: warning: format â%9luâ expects type âlong unsigned intâ, but argument 2 has type âsize_tâ
>tools.c: In function âgfopenâ:
>tools.c:1045:12: warning: ignoring return value of âscanfâ, declared with attribute warn_unused_result
>pamp.c: In function âReadSeqâ:
>treesub.c:277:15: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>treesub.c:309:40: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:517:16: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>mcmctree.c: In function âReadSeqâ:
>treesub.c:277:15: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>treesub.c:309:40: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:517:16: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>pamp.c: In function âScanFastaFileâ:
>treesub.c:79:16: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>mcmctree.c: In function âScanFastaFileâ:
>treesub.c:79:16: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>baseml.c: In function ârellâ:
>treesub.c:4412:10: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:4436:13: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:4440:17: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:4443:15: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>codeml.c: In function âlfunNSsites_rateâ:
>codeml.c:5042:15: warning: ignoring return value of âscanfâ, declared with attribute warn_unused_result
>codeml.c:5055:19: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>baseml.c: In function âStarDecompositionâ:
>treesub.c:3569:14: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>codeml.c: In function âPairwiseCodonâ:
>codeml.c:4435:43: warning: ignoring return value of âscanfâ, declared with attribute warn_unused_result
>baseml.c: In function âPerturbationâ:
>treesub.c:3274:14: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>codeml.c: In function âGetOmegaAAâ:
>codeml.c:4162:10: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>codeml.c:4179:16: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>codeml.c:4183:16: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>baseml.c: In function âreadxâ:
>treesub.c:3080:10: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>codeml.c: In function âGetDaaâ:
>codeml.c:4045:13: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>baseml.c: In function âReadTreeNâ:
>treesub.c:2213:16: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:2245:55: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:2246:55: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:2248:16: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:2305:12: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>baseml.c: In function âReadTreeBâ:
>treesub.c:1956:11: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:1971:21: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>baseml.c: In function âAllPatternsâ:
>treesub.c:697:9: warning: ignoring return value of âscanfâ, declared with attribute warn_unused_result
>baseml.c: In function âReadSeqâ:
>treesub.c:277:15: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>treesub.c:309:40: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:517:16: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>baseml.c: In function âScanFastaFileâ:
>treesub.c:79:16: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>codeml.c: In function âDatingHeteroDataâ:
>treesub.c:8252:15: warning: ignoring return value of âscanfâ, declared with attribute warn_unused_result
>codeml.c: In function âAdHocRateSmoothingâ:
>treesub.c:7960:19: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:8042:37: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:8133:12: warning: ignoring return value of âscanfâ, declared with attribute warn_unused_result
>codeml.c: In function âReadTreeSeqsâ:
>treesub.c:7152:10: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>codeml.c: In function ârellâ:
>treesub.c:4412:10: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:4436:13: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:4440:17: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:4443:15: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>codeml.c: In function âStarDecompositionâ:
>treesub.c:3569:14: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>codeml.c: In function âPerturbationâ:
>treesub.c:3274:14: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>codeml.c: In function âreadxâ:
>treesub.c:3080:10: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>codeml.c: In function âReadTreeNâ:
>treesub.c:2213:16: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:2245:55: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:2246:55: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:2248:16: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:2305:12: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>codeml.c: In function âReadTreeBâ:
>treesub.c:1956:11: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:1971:21: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>codeml.c: In function âAllPatternsâ:
>treesub.c:697:9: warning: ignoring return value of âscanfâ, declared with attribute warn_unused_result
>codeml.c: In function âReadSeqâ:
>treesub.c:277:15: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>treesub.c:309:40: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:517:16: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>codeml.c: In function âScanFastaFileâ:
>treesub.c:79:16: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>i686-pc-linux-gnu-gcc -O2 -pipe -o basemlg basemlg.o tools.o -lm 
>i686-pc-linux-gnu-gcc -O2 -pipe -o pamp pamp.o tools.o -lm 
>i686-pc-linux-gnu-gcc -O2 -pipe -o evolver evolver.o tools.o -lm 
>i686-pc-linux-gnu-gcc -O2 -pipe -o yn00 yn00.c tools.o -lm 
>yn00.c: In function âAllPatternsâ:
>treesub.c:697:9: warning: ignoring return value of âscanfâ, declared with attribute warn_unused_result
>yn00.c: In function âReadSeqâ:
>treesub.c:277:15: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result
>treesub.c:309:40: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>treesub.c:517:16: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>yn00.c: In function âScanFastaFileâ:
>treesub.c:79:16: warning: ignoring return value of âfscanfâ, declared with attribute warn_unused_result
>i686-pc-linux-gnu-gcc -O2 -pipe -o mcmctree mcmctree.o tools.o -lm 
>i686-pc-linux-gnu-gcc -O2 -pipe -o baseml baseml.o tools.o -lm 
>i686-pc-linux-gnu-gcc -O2 -pipe -o codeml codeml.o tools.o -lm 
>>>> Source compiled.
>>>> Test phase [none]: sci-biology/paml-4.3b
>
>>>> Install paml-4.3b into /var/tmp/portage/sci-biology/paml-4.3b/image/ category sci-biology
>/var/tmp/portage/sci-biology/paml-4.3b/work/paml43/src /var/tmp/portage/sci-biology/paml-4.3b/work/paml43
>/var/tmp/portage/sci-biology/paml-4.3b/work/paml43
>>>> Completed installing paml-4.3b into /var/tmp/portage/sci-biology/paml-4.3b/image/
>
>strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment
>   usr/bin/basemlg
>   usr/bin/baseml
>   usr/bin/mcmctree
>   usr/bin/pamp
>   usr/bin/yn00
>   usr/bin/evolver
>   usr/bin/codeml
>   usr/bin/chi2
>
> * QA Notice: Files built without respecting LDFLAGS have been detected
> *  Please include the following list of files in your report:
> * /usr/bin/basemlg
> * /usr/bin/baseml
> * /usr/bin/mcmctree
> * /usr/bin/pamp
> * /usr/bin/yn00
> * /usr/bin/evolver
> * /usr/bin/codeml
> * /usr/bin/chi2
>
> * Gentoo contact information ...
>herds:
>    sci-biology
>maintainers:
>

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Attachments on bug 335608: 245692