* CPV: sci-biology/allpaths-2.0 * REPO: gentoo * USE: elibc_glibc kernel_linux test userland_GNU x86 >>> Unpacking source... >>> Unpacking allpaths-2.0.tar.gz to /var/tmp/portage/sci-biology/allpaths-2.0/work >>> Unpacking allpaths-2.0.manual.docx to /var/tmp/portage/sci-biology/allpaths-2.0/work unpack allpaths-2.0.manual.docx: file format not recognized. Ignoring. >>> Source unpacked in /var/tmp/portage/sci-biology/allpaths-2.0/work >>> Preparing source in /var/tmp/portage/sci-biology/allpaths-2.0/work ... * Applying allpaths-2.0-gcc-x86-no-autocast.patch ... [ ok ] >>> Source prepared. >>> Configuring source in /var/tmp/portage/sci-biology/allpaths-2.0/work ... ./configure --prefix=/usr --build=i686-pc-linux-gnu --host=i686-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib configure: loading site script /usr/share/config.site configure: loading site script /usr/share/crossdev/include/site/linux checking for gawk... gawk checking for a sed that does not truncate output... /bin/sed checking for bison... bison -y checking for i686-pc-linux-gnu-g++... i686-pc-linux-gnu-g++ checking for C++ compiler default output file name... a.out checking whether the C++ compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether i686-pc-linux-gnu-g++ accepts -g... yes checking for i686-pc-linux-gnu-gcc... i686-pc-linux-gnu-gcc checking whether we are using the GNU C compiler... yes checking whether i686-pc-linux-gnu-gcc accepts -g... yes checking for i686-pc-linux-gnu-gcc option to accept ISO C89... none needed checking for flex... flex checking lex output file root... lex.yy checking lex library... -lfl checking whether yytext is a pointer... yes checking whether ln -s works... yes checking whether make sets $(MAKE)... yes checking to see if we need to include the Boost libraries... no checking to see if we need to include the Xerces libraries... no checking to see if we need to include the GMP libraries... no checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/wait.h that is POSIX.1 compatible... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking for memory.h... (cached) yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking sys/file.h usability... yes checking sys/file.h presence... yes checking for sys/file.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking wchar.h usability... yes checking wchar.h presence... yes checking for wchar.h... yes configure: VENDOR wasn't set, setting to a default checking for getline in -lm... yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for mode_t... yes checking for off_t... yes checking for pid_t... yes checking for C/C++ restrict keyword... __restrict checking for size_t... yes checking for ssize_t... yes checking whether time.h and sys/time.h may both be included... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for uint8_t... yes checking for working volatile... yes checking for ptrdiff_t... yes checking for ulong... yes checking whether closedir returns void... no checking for error_at_line... yes checking vfork.h usability... no checking vfork.h presence... no checking for vfork.h... no checking for fork... yes checking for vfork... yes checking for working fork... yes checking for working vfork... (cached) yes checking whether i686-pc-linux-gnu-gcc needs -traditional... no checking whether lstat dereferences a symlink specified with a trailing slash... yes checking whether lstat accepts an empty string... no checking whether lstat dereferences a symlink specified with a trailing slash... (cached) yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for working memcmp... yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for getpagesize... yes checking for working mmap... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking types of arguments for select... int,fd_set *,struct timeval * checking return type of signal handlers... void checking whether stat accepts an empty string... no checking for strftime... yes checking for alarm... yes checking for atexit... yes checking for bzero... yes checking for dup2... yes checking for floor... no checking for ftruncate... yes checking for getcwd... yes checking for gethostname... yes checking for getpagesize... (cached) yes checking for gettimeofday... yes checking for memchr... yes checking for memmove... yes checking for memset... yes checking for mkdir... yes checking for mkfifo... yes checking for munmap... yes checking for pow... no checking for putenv... yes checking for realpath... yes checking for regcomp... yes checking for rint... no checking for rmdir... yes checking for select... yes checking for setenv... yes checking for setlocale... yes checking for sqrt... no checking for strcasecmp... yes checking for strchr... yes checking for strdup... yes checking for strerror... yes checking for strncasecmp... yes checking for strrchr... yes checking for strstr... yes checking for strtol... yes checking for strtoul... yes checking for uname... yes checking to see that gcc is at least version 4.3.2... Yes, gcc version 4.5.1 is fine checking whether byte ordering is bigendian... no configure: creating ./config.status config.status: creating Makefile config.status: creating config.h >>> Source configured. >>> Compiling source in /var/tmp/portage/sci-biology/allpaths-2.0/work ... make -j14 i686-pc-linux-gnu-g++ ./util/checkLock.cc -o bin/checkLock i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:56:55 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./Basevector.cc -o obj/Basevector.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:56:55 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./Bitvector.cc -o obj/Bitvector.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:56:55 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./Feudal.cc -o obj/Feudal.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:56:55 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./FeudalMimic.cc -o obj/FeudalMimic.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:56:55 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./FeudalReadPart.cc -o obj/FeudalReadPart.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:56:55 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./MemberOf.cc -o obj/MemberOf.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:56:55 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./ParseRange.cc -o obj/ParseRange.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:56:55 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./ParseSet.cc -o obj/ParseSet.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:56:55 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./String.cc -o obj/String.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:56:55 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./TokenizeString.cc -o obj/TokenizeString.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:56:55 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./Vec.cc -o obj/Vec.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:56:55 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./VecString.cc -o obj/VecString.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:56:55 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./charTranslations.cc -o obj/charTranslations.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:56:55 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./math/Arith.cc -o obj/math/Arith.o In file included from ./Vec.cc:30:0: ./VecTemplate.h:380:2: warning: #warning is a GCC extension ./VecTemplate.h:380:2: warning: #warning Unable to implement BinaryMmap3(), defaulting to use BinaryRead3() instead. i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:56:55 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./math/Functions.cc -o obj/math/Functions.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:56:56 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./math/HoInterval.cc -o obj/math/HoInterval.o ./FeudalReadPart.cc: In member function ‘void read_part::Fetch(longlong, longlong, char*)’: ./FeudalReadPart.cc:24:37: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::MapAll(const String&) [with X = serfvec, A = unsigned int]’: ./FeudalTemplate.h:758:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./Basevector.cc: In member function ‘void basevector::SetToSubOf(const basevector&, unsigned int, int, int)’: ./Basevector.cc:791:22: warning: comparison between signed and unsigned integer expressions ./FeudalTemplate.h: In function ‘bool IsGoodFeudalFile(const String&, const X*, bool, bool) [with X = serfvec]’: ./FeudalTemplate.h:901:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::ReadAll(const String&, Bool, Bool) [with X = serfvec, A = unsigned int, Bool = unsigned char]’: ./FeudalTemplate.h:711:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:720:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:722:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Write(const String&, int, int) const [with X = serfvec, A = unsigned int]’: ./FeudalTemplate.h:372:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result cp ./random/Random.cc ./random/Random.c ./FeudalTemplate.h: In member function ‘void mastervec::SparseRead(const String&, const vec&, int, Bool, Bool) [with X = serfvec, A = unsigned int, Bool = unsigned char]’: ./FeudalTemplate.h:617:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = serfvec, A = unsigned int, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::MapAll(const String&) [with X = serfvec, A = int]’: ./FeudalTemplate.h:758:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In function ‘bool IsGoodFeudalFile(const String&, const X*, bool, bool) [with X = serfvec]’: ./FeudalTemplate.h:901:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::ReadAll(const String&, Bool, Bool) [with X = serfvec, A = int, Bool = unsigned char]’: ./FeudalTemplate.h:711:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:720:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:722:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result cc -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -c ./random/Random.cc -w -Drandom=randomx -Dsrandom=srandomx -o obj/random/Random.o ./FeudalTemplate.h: In member function ‘void mastervec::Write(const String&, int, int) const [with X = serfvec, A = int]’: ./FeudalTemplate.h:372:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::SparseRead(const String&, const vec&, int, Bool, Bool) [with X = serfvec, A = int, Bool = unsigned char]’: ./FeudalTemplate.h:617:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = serfvec, A = int, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:56:56 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./system/Assert.cc -o obj/system/Assert.o ./FeudalTemplate.h: In member function ‘void mastervec::MapAll(const String&) [with X = serfvec, A = float]’: ./FeudalTemplate.h:758:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In function ‘bool IsGoodFeudalFile(const String&, const X*, bool, bool) [with X = serfvec]’: ./FeudalTemplate.h:901:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::ReadAll(const String&, Bool, Bool) [with X = serfvec, A = float, Bool = unsigned char]’: ./FeudalTemplate.h:711:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:720:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:722:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Write(const String&, int, int) const [with X = serfvec, A = float]’: ./FeudalTemplate.h:372:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::SparseRead(const String&, const vec&, int, Bool, Bool) [with X = serfvec, A = float, Bool = unsigned char]’: ./FeudalTemplate.h:617:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = serfvec, A = float, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::MapAll(const String&) [with X = serfvec, A = short unsigned int]’: ./FeudalTemplate.h:758:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In function ‘bool IsGoodFeudalFile(const String&, const X*, bool, bool) [with X = serfvec]’: ./FeudalTemplate.h:901:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::ReadAll(const String&, Bool, Bool) [with X = serfvec, A = short unsigned int, Bool = unsigned char]’: ./FeudalTemplate.h:711:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:720:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:722:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Write(const String&, int, int) const [with X = serfvec, A = short unsigned int]’: ./FeudalTemplate.h:372:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::SparseRead(const String&, const vec&, int, Bool, Bool) [with X = serfvec, A = short unsigned int, Bool = unsigned char]’: ./FeudalTemplate.h:617:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = serfvec, A = short unsigned int, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::MapAll(const String&) [with X = serfvec, A = unsigned char]’: ./FeudalTemplate.h:758:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In function ‘bool IsGoodFeudalFile(const String&, const X*, bool, bool) [with X = serfvec]’: ./FeudalTemplate.h:901:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::ReadAll(const String&, Bool, Bool) [with X = serfvec, A = unsigned char, Bool = unsigned char]’: ./FeudalTemplate.h:711:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:720:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:722:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Write(const String&, int, int) const [with X = serfvec, A = unsigned char]’: ./FeudalTemplate.h:372:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::SparseRead(const String&, const vec&, int, Bool, Bool) [with X = serfvec, A = unsigned char, Bool = unsigned char]’: ./FeudalTemplate.h:617:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = serfvec, A = unsigned char, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./Feudal.cc: In function ‘void MergeMastervecs(const String&, const String&, const String&)’: ./Feudal.cc:271:31: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./Feudal.cc:279:28: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./Feudal.cc: In function ‘void ConcatenateMastervecData(const String&, const String&)’: ./Feudal.cc:164:24: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./Feudal.cc:168:24: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./Feudal.cc:197:33: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./Feudal.cc: In function ‘longlong MastervecFileRawCount(const String&, int)’: ./Feudal.cc:108:40: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./Feudal.cc:128:26: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./Feudal.cc:130:26: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./Feudal.cc: In function ‘void DivideMastervecFile(const String&)’: ./Feudal.cc:92:38: warning: ignoring return value of ‘int ftruncate(int, __off64_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::MapAll(const String&) [with X = bitvector, A = unsigned int]’: ./FeudalTemplate.h:758:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:56:56 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./system/Crash.cc -o obj/system/Crash.o ./FeudalTemplate.h: In member function ‘void mastervec::ReadAll(const String&, Bool, Bool) [with X = bitvector, A = unsigned int, Bool = unsigned char]’: ./FeudalTemplate.h:711:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:720:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:722:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Write(const String&, int, int) const [with X = bitvector, A = unsigned int]’: ./FeudalTemplate.h:372:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result rm ./random/Random.c ./FeudalTemplate.h: In member function ‘void mastervec::SparseRead(const String&, const vec&, int, Bool, Bool) [with X = bitvector, A = unsigned int, Bool = unsigned char]’: ./FeudalTemplate.h:617:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = bitvector, A = unsigned int, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./Bitvector.cc: In function ‘bool IsGoodFeudalFile(const String&, const X*, bool, bool) [with X = bitvector]’: ./Bitvector.cc:177:40: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::MapAll(const String&) [with X = basevector, A = unsigned int]’: ./FeudalTemplate.h:758:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = double, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = double, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:56:57 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./system/Exit.cc -o obj/system/Exit.o ./FeudalTemplate.h: In member function ‘void mastervec::MapAll(const String&) [with X = String, A = char]’: ./FeudalTemplate.h:758:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = float, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = float, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In function ‘bool IsGoodFeudalFile(const String&, const X*, bool, bool) [with X = String]’: ./FeudalTemplate.h:901:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::ReadAll(const String&, Bool, Bool) [with X = String, A = char, Bool = unsigned char]’: ./FeudalTemplate.h:711:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:720:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:722:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::ReadAll(const String&, Bool, Bool) [with X = basevector, A = unsigned int, Bool = unsigned char]’: ./FeudalTemplate.h:711:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:720:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:722:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Write(const String&, int, int) const [with X = basevector, A = unsigned int]’: ./FeudalTemplate.h:372:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Write(const String&, int, int) const [with X = String, A = char]’: ./FeudalTemplate.h:372:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::SparseRead(const String&, const vec&, int, Bool, Bool) [with X = String, A = char, Bool = unsigned char]’: ./FeudalTemplate.h:617:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = String, A = char, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = long long int, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = long long int, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = int, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::SparseRead(const String&, const vec&, int, Bool, Bool) [with X = basevector, A = unsigned int, Bool = unsigned char]’: ./FeudalTemplate.h:617:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = basevector, A = unsigned int, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = int, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = unsigned char, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:56:57 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./system/MemTracker.cc -o obj/system/MemTracker.o ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = unsigned char, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./Basevector.cc: In function ‘bool IsGoodFeudalFile(const String&, const X*, bool, bool) [with X = basevector]’: ./Basevector.cc:951:40: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = char, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = char, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:56:57 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./system/ParsedArgs.cc -o obj/system/ParsedArgs.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:56:57 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./system/ProcBuf.cc -o obj/system/ProcBuf.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:56:57 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./system/RunTime.cc -o obj/system/RunTime.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:56:57 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./system/System.cc -o obj/system/System.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:56:57 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./system/TraceVal.cc -o obj/system/TraceVal.o ./system/System.cc: In function ‘String GetTempDir(String)’: ./system/System.cc:1056:42: warning: ignoring return value of ‘char* mkdtemp(char*)’, declared with attribute warn_unused_result ./math/HoInterval.h: In function ‘void OverlapIndices(const ho_interval&, const vec&, int, vec&)’: ./math/HoInterval.h:24:11: warning: assuming signed overflow does not occur when assuming that (X - c) > X is always false i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:56:58 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./system/Types.cc -o obj/system/Types.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:56:59 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./util/BitvectorOp.cc -o obj/util/BitvectorOp.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:56:59 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./util/Kronos.cc -o obj/util/Kronos.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:00 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./Alignment.cc -o obj/Alignment.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:00 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./BasevectorTools.cc -o obj/BasevectorTools.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:00 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./Equiv.cc -o obj/Equiv.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:01 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./FastIfstream.cc -o obj/FastIfstream.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:01 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./FeudalFileWriter.cc -o obj/FeudalFileWriter.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:01 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./HashSimple.cc -o obj/HashSimple.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:02 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./IndexedAlignmentPlusVector.cc -o obj/IndexedAlignmentPlusVector.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:02 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./KmerRecord.cc -o obj/KmerRecord.o ./FeudalFileWriter.cc: In member function ‘void FeudalFileWriter::write(const void*, FeudalFileWriter::size_type)’: ./FeudalFileWriter.cc:83:68: warning: comparison between signed and unsigned integer expressions i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:02 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./KmerShape.cc -o obj/KmerShape.o In file included from ./KmerRecord.cc:10:0: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 In file included from ./KmerRecord.cc:11:0: ./VecTemplate.h:380:2: warning: #warning is a GCC extension ./VecTemplate.h:380:2: warning: #warning Unable to implement BinaryMmap3(), defaulting to use BinaryRead3() instead. ./KmerRecord.cc:15:41: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.cc:15:41: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.cc:15:41: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.cc:15:41: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.cc:15:41: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.cc:15:41: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.cc:15:41: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.cc:15:41: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.cc:15:41: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.cc:15:41: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.cc:15:41: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.cc:15:41: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.cc:15:41: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.cc:15:41: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.cc:15:41: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.cc:15:41: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.cc:15:41: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.cc:15:41: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.cc:15:41: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.cc:15:41: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.cc:15:41: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.cc:15:41: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.cc:15:41: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.cc:15:41: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.cc:15:41: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.cc:15:41: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.cc:15:41: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.cc:15:41: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.cc:15:41: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.cc:15:41: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.cc:15:41: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:02 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./PackAlign.cc -o obj/PackAlign.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:03 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./PairsHandler.cc -o obj/PairsHandler.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:03 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./PrintAlignment.cc -o obj/PrintAlignment.o In file included from ./PackAlign.cc:19:0: ./VecTemplate.h:380:2: warning: #warning is a GCC extension ./VecTemplate.h:380:2: warning: #warning Unable to implement BinaryMmap3(), defaulting to use BinaryRead3() instead. i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:03 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./Qualvector.cc -o obj/Qualvector.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:03 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./ReadLocation.cc -o obj/ReadLocation.o In file included from ./ReadLocation.cc:22:0: ./VecTemplate.h:380:2: warning: #warning is a GCC extension ./VecTemplate.h:380:2: warning: #warning Unable to implement BinaryMmap3(), defaulting to use BinaryRead3() instead. i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:04 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./ReadPairing.cc -o obj/ReadPairing.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:04 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./SortKmers.cc -o obj/SortKmers.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:05 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./VecAlignmentPlus.cc -o obj/VecAlignmentPlus.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:05 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./VecOverlap.cc -o obj/VecOverlap.o ./FeudalTemplate.h: In member function ‘void mastervec::MapAll(const String&) [with X = serfvec, A = placement_mark]’: ./FeudalTemplate.h:758:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In function ‘bool IsGoodFeudalFile(const String&, const X*, bool, bool) [with X = serfvec]’: ./FeudalTemplate.h:901:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::ReadAll(const String&, Bool, Bool) [with X = serfvec, A = placement_mark, Bool = unsigned char]’: ./FeudalTemplate.h:711:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:720:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:722:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Write(const String&, int, int) const [with X = serfvec, A = placement_mark]’: ./FeudalTemplate.h:372:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::SparseRead(const String&, const vec&, int, Bool, Bool) [with X = serfvec, A = placement_mark, Bool = unsigned char]’: ./FeudalTemplate.h:617:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = serfvec, A = placement_mark, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result In file included from ./SortKmers.h:20:0, from ./SortKmersImpl.h:13, from ./SortKmers.cc:11: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = placement_mark, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = placement_mark, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./ReadPairing.cc: In function ‘void ReadsToPairs(const String&, const vec&, vec&, const String&)’: ./ReadPairing.cc:112:59: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./Vec.h: In function ‘void BinaryReadSubset(const String&, const vec&, vec&) [with T = int]’: ./Vec.h:1287:11: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:05 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./graph/Digraph.cc -o obj/graph/Digraph.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:05 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./graphics/BasicGraphics.cc -o obj/graphics/BasicGraphics.o ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = read_location_short, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = read_location_short, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./Vec.h: In function ‘void BinaryReadSubset0(const String&, const vec&, vec&) [with T = unsigned char]’: ./Vec.h:1328:11: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./ReadLocation.cc: In function ‘void ReadsToLocations(const String&, const vec&, vec >&)’: ./ReadLocation.cc:75:34: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./ReadLocation.cc:79:62: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./ReadLocation.cc:83:54: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./ReadLocation.cc:85:70: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./ReadLocation.cc:90:67: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./PackAlign.cc: In copy constructor ‘packalign::packalign(const packalign&)’: ./PackAlign.cc:176:27: warning: ‘pw_new.short_pointer_or_words::.short_pointer_or_words::::x[1]’ may be used uninitialized in this function ./PackAlign.cc:194:27: warning: ‘pw_new.int_pointer_or_words::.int_pointer_or_words::::x[1]’ may be used uninitialized in this function ./PackAlign.cc: In member function ‘packalign& packalign::operator=(const packalign&)’: ./PackAlign.cc:282:27: warning: ‘pw_new.short_pointer_or_words::.short_pointer_or_words::::x[1]’ may be used uninitialized in this function ./PackAlign.cc:300:27: warning: ‘pw_new.int_pointer_or_words::.int_pointer_or_words::::x[1]’ may be used uninitialized in this function i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:06 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./graphics/Color.cc -o obj/graphics/Color.o ./VecAlignmentPlus.cc: In function ‘void ReadAlignsIndex(const String&, int, int, vec&)’: ./VecAlignmentPlus.cc:452:52: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecAlignmentPlus.cc:459:54: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./PackAlign.cc: In member function ‘void packalign::ConvertToType1(int, int, const avector&, const avector&, int)’: ./PackAlign.cc:434:21: warning: ‘pw.short_pointer_or_words::.short_pointer_or_words::::x[1]’ is used uninitialized in this function ./PackAlign.cc: In member function ‘void packalign::ConvertToType2(int, int, const avector&, const avector&, int)’: ./PackAlign.cc:491:21: warning: ‘pw.int_pointer_or_words::.int_pointer_or_words::::x[1]’ is used uninitialized in this function i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:06 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./math/Matrix.cc -o obj/math/Matrix.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:07 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./math/Permutation.cc -o obj/math/Permutation.o ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer_with_count<10000>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer_with_count<10000>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer_with_count<4000>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer_with_count<4000>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer_with_count<2000>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer_with_count<2000>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer_with_count<1600>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer_with_count<1600>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer_with_count<1200>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer_with_count<1200>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer_with_count<1000>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer_with_count<1000>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer_with_count<500>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer_with_count<500>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer_with_count<200>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer_with_count<200>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer_with_count<192>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer_with_count<192>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer_with_count<100>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer_with_count<100>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer_with_count<96>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer_with_count<96>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer_with_count<80>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer_with_count<80>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer_with_count<68>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer_with_count<68>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer_with_count<65>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer_with_count<65>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer_with_count<64>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer_with_count<64>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer_with_count<52>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer_with_count<52>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer_with_count<49>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer_with_count<49>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer_with_count<48>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer_with_count<48>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer_with_count<40>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer_with_count<40>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer_with_count<36>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer_with_count<36>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer_with_count<32>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer_with_count<32>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer_with_count<29>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer_with_count<29>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer_with_count<28>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer_with_count<28>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer_with_count<26>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer_with_count<26>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer_with_count<24>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer_with_count<24>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer_with_count<21>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer_with_count<21>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer_with_count<20>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer_with_count<20>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:07 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./pairwise_aligners/MatchList.cc -o obj/pairwise_aligners/MatchList.o ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer_with_count<19>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer_with_count<19>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer_with_count<16>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer_with_count<16>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer_with_count<12>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer_with_count<12>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer_with_count<8>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer_with_count<8>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:09 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./pairwise_aligners/MaxMutmerFromMer.cc -o obj/pairwise_aligners/MaxMutmerFromMer.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:09 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./pairwise_aligners/Mutmer.cc -o obj/pairwise_aligners/Mutmer.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:10 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./pairwise_aligners/PerfectAligner.cc -o obj/pairwise_aligners/PerfectAligner.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:10 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./pairwise_aligners/SmithWatBandedA.cc -o obj/pairwise_aligners/SmithWatBandedA.o In file included from ./SortKmers.h:20:0, from ./pairwise_aligners/PerfectAligner.cc:13: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:10 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/AddSuperReads.cc -o obj/paths/AddSuperReads.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:11 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/AlignAndMerge.cc -o obj/paths/AlignAndMerge.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:11 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/BuildUnipathLinkGraphs.cc -o obj/paths/BuildUnipathLinkGraphs.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:11 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/CompletedInsert.cc -o obj/paths/CompletedInsert.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:11 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/ExtendUnipathSeqs.cc -o obj/paths/ExtendUnipathSeqs.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:13 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/FindClosures.cc -o obj/paths/FindClosures.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:13 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/GapSkip.cc -o obj/paths/GapSkip.o ./FeudalTemplate.h: In member function ‘void mastervec::MapAll(const String&) [with X = serfvec, A = SloppyReadPlacement]’: ./FeudalTemplate.h:758:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In function ‘bool IsGoodFeudalFile(const String&, const X*, bool, bool) [with X = serfvec]’: ./FeudalTemplate.h:901:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::ReadAll(const String&, Bool, Bool) [with X = serfvec, A = SloppyReadPlacement, Bool = unsigned char]’: ./FeudalTemplate.h:711:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:720:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:722:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Write(const String&, int, int) const [with X = serfvec, A = SloppyReadPlacement]’: ./FeudalTemplate.h:372:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::SparseRead(const String&, const vec&, int, Bool, Bool) [with X = serfvec, A = SloppyReadPlacement, Bool = unsigned char]’: ./FeudalTemplate.h:617:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = serfvec, A = SloppyReadPlacement, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:14 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/HyperKmerPath.cc -o obj/paths/HyperKmerPath.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:16 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/HyperKmerPathCleaner.cc -o obj/paths/HyperKmerPathCleaner.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:16 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/ImproperMerge.cc -o obj/paths/ImproperMerge.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:16 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/KmerBaseBroker.cc -o obj/paths/KmerBaseBroker.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:17 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/KmerPath.cc -o obj/paths/KmerPath.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:17 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/KmerPathBreadthSearcher.cc -o obj/paths/KmerPathBreadthSearcher.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:19 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/KmerPathDatabase.cc -o obj/paths/KmerPathDatabase.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:19 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/KmerPathInterval.cc -o obj/paths/KmerPathInterval.o ./FeudalTemplate.h: In member function ‘void mastervec::MapAll(const String&) [with X = KmerPath, A = KmerPathInterval]’: ./FeudalTemplate.h:758:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In function ‘bool IsGoodFeudalFile(const String&, const X*, bool, bool) [with X = KmerPath]’: ./FeudalTemplate.h:901:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::ReadAll(const String&, Bool, Bool) [with X = KmerPath, A = KmerPathInterval, Bool = unsigned char]’: ./FeudalTemplate.h:711:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:720:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:722:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Write(const String&, int, int) const [with X = KmerPath, A = KmerPathInterval]’: ./FeudalTemplate.h:372:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::SparseRead(const String&, const vec&, int, Bool, Bool) [with X = KmerPath, A = KmerPathInterval, Bool = unsigned char]’: ./FeudalTemplate.h:617:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = KmerPath, A = KmerPathInterval, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result In file included from ./paths/KmerPathInterval.cc:10:0: ./VecTemplate.h:380:2: warning: #warning is a GCC extension ./VecTemplate.h:380:2: warning: #warning Unable to implement BinaryMmap3(), defaulting to use BinaryRead3() instead. ./paths/KmerPathInterval.cc: In function ‘void Prepare(vec&) [with TAG = tagged_rpint]’: ./paths/KmerPathInterval.cc:58:48: instantiated from here ./paths/KmerPathInterval.cc:50:7: warning: comparison between signed and unsigned integer expressions ./paths/KmerPathInterval.cc: In function ‘void Prepare(vec&) [with TAG = big_tagged_rpint]’: ./paths/KmerPathInterval.cc:59:52: instantiated from here ./paths/KmerPathInterval.cc:50:7: warning: comparison between signed and unsigned integer expressions ./paths/KmerPathInterval.cc: In function ‘void Prepare(vec&) [with TAG = BIG_tagged_rpint]’: ./paths/KmerPathInterval.cc:60:52: instantiated from here ./paths/KmerPathInterval.cc:50:7: warning: comparison between signed and unsigned integer expressions ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = BIG_tagged_rpint, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = BIG_tagged_rpint, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = big_tagged_rpint, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = big_tagged_rpint, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = tagged_rpint, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = tagged_rpint, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:19 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/KmerPathMuxSearcher.cc -o obj/paths/KmerPathMuxSearcher.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:22 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/Mux.cc -o obj/paths/Mux.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:22 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/MuxGraph.cc -o obj/paths/MuxGraph.o In file included from ./paths/Mux.cc:5:0: ./VecTemplate.h:380:2: warning: #warning is a GCC extension ./VecTemplate.h:380:2: warning: #warning Unable to implement BinaryMmap3(), defaulting to use BinaryRead3() instead. i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:23 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/MuxSearchAgent.cc -o obj/paths/MuxSearchAgent.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:24 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/MuxSearchPolicy.cc -o obj/paths/MuxSearchPolicy.o ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = Mux, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = Mux, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:24 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/MuxToPath.cc -o obj/paths/MuxToPath.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:25 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/MuxWalkGraph.cc -o obj/paths/MuxWalkGraph.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:26 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/NegativeGapValidator.cc -o obj/paths/NegativeGapValidator.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:27 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/OffsetTracker.cc -o obj/paths/OffsetTracker.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:28 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/PairedPair.cc -o obj/paths/PairedPair.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:28 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/PathEmbedding.cc -o obj/paths/PathEmbedding.o ./FeudalTemplate.h: In member function ‘void mastervec::MapAll(const String&) [with X = serfvec, A = ImplicitOffset]’: ./FeudalTemplate.h:758:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In function ‘bool IsGoodFeudalFile(const String&, const X*, bool, bool) [with X = serfvec]’: ./FeudalTemplate.h:901:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Write(const String&, int, int) const [with X = serfvec, A = ImplicitOffset]’: ./FeudalTemplate.h:372:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::SparseRead(const String&, const vec&, int, Bool, Bool) [with X = serfvec, A = ImplicitOffset, Bool = unsigned char]’: ./FeudalTemplate.h:617:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = serfvec, A = ImplicitOffset, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::ReadAll(const String&, Bool, Bool) [with X = serfvec, A = ImplicitOffset, Bool = unsigned char]’: ./FeudalTemplate.h:711:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:720:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:722:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:28 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/PathWalk.cc -o obj/paths/PathWalk.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:30 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/PdfEntry.cc -o obj/paths/PdfEntry.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:30 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/PileReadsOnPath.cc -o obj/paths/PileReadsOnPath.o ./FeudalTemplate.h: In member function ‘void mastervec::MapAll(const String&) [with X = serfvec, A = pdf_entry]’: ./FeudalTemplate.h:758:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In function ‘bool IsGoodFeudalFile(const String&, const X*, bool, bool) [with X = serfvec]’: ./FeudalTemplate.h:901:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::ReadAll(const String&, Bool, Bool) [with X = serfvec, A = pdf_entry, Bool = unsigned char]’: ./FeudalTemplate.h:711:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:720:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:722:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Write(const String&, int, int) const [with X = serfvec, A = pdf_entry]’: ./FeudalTemplate.h:372:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::SparseRead(const String&, const vec&, int, Bool, Bool) [with X = serfvec, A = pdf_entry, Bool = unsigned char]’: ./FeudalTemplate.h:617:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = serfvec, A = pdf_entry, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:30 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/ReadFillDatabase.cc -o obj/paths/ReadFillDatabase.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:31 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/ReadFillRecord.cc -o obj/paths/ReadFillRecord.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:31 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/SimpleWalk.cc -o obj/paths/SimpleWalk.o In file included from ./paths/ReadFillRecord.cc:4:0: ./VecTemplate.h:380:2: warning: #warning is a GCC extension ./VecTemplate.h:380:2: warning: #warning Unable to implement BinaryMmap3(), defaulting to use BinaryRead3() instead. ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = ReadFillRecord, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = ReadFillRecord, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:32 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/SubsumptionList.cc -o obj/paths/SubsumptionList.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:33 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/Unipath.cc -o obj/paths/Unipath.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:34 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/UnipathNhood.cc -o obj/paths/UnipathNhood.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:34 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/UnipathNhoodCommon.cc -o obj/paths/UnipathNhoodCommon.o In file included from ./paths/Unipath.cc:19:0: ./VecTemplate.h:380:2: warning: #warning is a GCC extension ./VecTemplate.h:380:2: warning: #warning Unable to implement BinaryMmap3(), defaulting to use BinaryRead3() instead. ./FeudalTemplate.h: In member function ‘void mastervec::MapAll(const String&) [with X = serfvec, A = BriefSubsumptionRecord]’: ./FeudalTemplate.h:758:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In function ‘bool IsGoodFeudalFile(const String&, const X*, bool, bool) [with X = serfvec]’: ./FeudalTemplate.h:901:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Write(const String&, int, int) const [with X = serfvec, A = BriefSubsumptionRecord]’: ./FeudalTemplate.h:372:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::SparseRead(const String&, const vec&, int, Bool, Bool) [with X = serfvec, A = BriefSubsumptionRecord, Bool = unsigned char]’: ./FeudalTemplate.h:617:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = serfvec, A = BriefSubsumptionRecord, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::ReadAll(const String&, Bool, Bool) [with X = serfvec, A = BriefSubsumptionRecord, Bool = unsigned char]’: ./FeudalTemplate.h:711:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:720:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:722:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:34 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/UnipathSeq.cc -o obj/paths/UnipathSeq.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:35 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/UnipathSeqBuilder.cc -o obj/paths/UnipathSeqBuilder.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:35 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/VerifyGapLengths.cc -o obj/paths/VerifyGapLengths.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:36 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/WalkPlot.cc -o obj/paths/WalkPlot.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:37 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/simulation/Placement.cc -o obj/paths/simulation/Placement.o ./FeudalTemplate.h: In member function ‘void mastervec::Write(const String&, int, int) const [with X = KmerPath, A = KmerPathInterval]’: ./FeudalTemplate.h:372:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::MapAll(const String&) [with X = serfvec, A = placement]’: ./FeudalTemplate.h:758:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In function ‘bool IsGoodFeudalFile(const String&, const X*, bool, bool) [with X = serfvec]’: ./FeudalTemplate.h:901:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::ReadAll(const String&, Bool, Bool) [with X = serfvec, A = placement, Bool = unsigned char]’: ./FeudalTemplate.h:711:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:720:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:722:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Write(const String&, int, int) const [with X = serfvec, A = placement]’: ./FeudalTemplate.h:372:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::SparseRead(const String&, const vec&, int, Bool, Bool) [with X = serfvec, A = placement, Bool = unsigned char]’: ./FeudalTemplate.h:617:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = serfvec, A = placement, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:37 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./random/Bernoulli.cc -o obj/random/Bernoulli.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:39 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./random/NormalDistribution.cc -o obj/random/NormalDistribution.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:40 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./random/NormalRandom.cc -o obj/random/NormalRandom.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:40 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./sort_kmers/SortKmersA.cc -o obj/sort_kmers/SortKmersA.o In file included from ./SortKmers.h:20:0, from ./SortKmersImpl.h:13, from ./sort_kmers/SortKmersA.cc:10: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersA.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersA.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersA.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersA.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersA.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersA.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersA.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersA.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersA.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersA.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:41 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./sort_kmers/SortKmersB.cc -o obj/sort_kmers/SortKmersB.o In file included from ./SortKmers.h:20:0, from ./SortKmersImpl.h:13, from ./sort_kmers/SortKmersB.cc:10: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersB.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersB.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersB.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersB.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersB.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersB.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersB.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersB.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:41 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./sort_kmers/SortKmersC.cc -o obj/sort_kmers/SortKmersC.o In file included from ./SortKmers.h:20:0, from ./SortKmersImpl.h:13, from ./sort_kmers/SortKmersC.cc:10: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersC.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersC.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersC.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersC.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersC.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersC.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersC.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersC.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:42 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./sort_kmers/SortKmersD.cc -o obj/sort_kmers/SortKmersD.o In file included from ./SortKmers.h:20:0, from ./SortKmersImpl.h:13, from ./sort_kmers/SortKmersD.cc:10: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersD.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersD.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersD.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersD.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:42 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./sort_kmers/SortKmersE.cc -o obj/sort_kmers/SortKmersE.o In file included from ./SortKmers.h:20:0, from ./SortKmersImpl.h:13, from ./sort_kmers/SortKmersE.cc:10: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersE.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersE.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersE.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersE.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersE.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersE.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:42 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./sort_kmers/SortKmersF.cc -o obj/sort_kmers/SortKmersF.o In file included from ./SortKmers.h:20:0, from ./SortKmersImpl.h:13, from ./sort_kmers/SortKmersF.cc:10: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersF.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersF.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:44 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./sort_kmers/SortKmersG.cc -o obj/sort_kmers/SortKmersG.o In file included from ./SortKmers.h:20:0, from ./SortKmersImpl.h:13, from ./sort_kmers/SortKmersG.cc:10: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersG.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersG.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:45 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./sort_kmers/SortKmersH.cc -o obj/sort_kmers/SortKmersH.o In file included from ./SortKmers.h:20:0, from ./SortKmersImpl.h:13, from ./sort_kmers/SortKmersH.cc:10: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersH.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersH.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersH.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:46 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./sort_kmers/SortKmersI.cc -o obj/sort_kmers/SortKmersI.o In file included from ./SortKmers.h:20:0, from ./SortKmersImpl.h:13, from ./sort_kmers/SortKmersI.cc:10: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersI.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersI.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersI.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersI.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./sort_kmers/SortKmersI.cc:14:52: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:49 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./BinaryIO.cc -o obj/BinaryIO.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:50 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./BlockAlign.cc -o obj/BlockAlign.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:52 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./Charvector.cc -o obj/Charvector.o ./FeudalTemplate.h: In member function ‘void mastervec::MapAll(const String&) [with X = serfvec, A = char]’: ./FeudalTemplate.h:758:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In function ‘bool IsGoodFeudalFile(const String&, const X*, bool, bool) [with X = serfvec]’: ./FeudalTemplate.h:901:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::ReadAll(const String&, Bool, Bool) [with X = serfvec, A = char, Bool = unsigned char]’: ./FeudalTemplate.h:711:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:720:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:722:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Write(const String&, int, int) const [with X = serfvec, A = char]’: ./FeudalTemplate.h:372:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::SparseRead(const String&, const vec&, int, Bool, Bool) [with X = serfvec, A = char, Bool = unsigned char]’: ./FeudalTemplate.h:617:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = serfvec, A = char, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:52 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./CompressedSequence.cc -o obj/CompressedSequence.o ./FeudalTemplate.h: In member function ‘void mastervec::MapAll(const String&) [with X = CompressedSequence, A = short unsigned int]’: ./FeudalTemplate.h:758:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::ReadAll(const String&, Bool, Bool) [with X = CompressedSequence, A = short unsigned int, Bool = unsigned char]’: ./FeudalTemplate.h:711:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:720:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:722:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Write(const String&, int, int) const [with X = CompressedSequence, A = short unsigned int]’: ./FeudalTemplate.h:372:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::SparseRead(const String&, const vec&, int, Bool, Bool) [with X = CompressedSequence, A = short unsigned int, Bool = unsigned char]’: ./FeudalTemplate.h:617:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = CompressedSequence, A = short unsigned int, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./CompressedSequence.cc: In function ‘bool IsGoodFeudalFile(const String&, const X*, bool, bool) [with X = CompressedSequence]’: ./CompressedSequence.cc:504:40: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:53 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./FastaConverter.cc -o obj/FastaConverter.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:57 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./FastaFilestream.cc -o obj/FastaFilestream.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:57 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./FastaFilestreamPreview.cc -o obj/FastaFilestreamPreview.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:57:59 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./FastaNameParser.cc -o obj/FastaNameParser.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:00 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./FastaVerifier.cc -o obj/FastaVerifier.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:00 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./FetchReads.cc -o obj/FetchReads.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:00 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./ScoreAlignment.cc -o obj/ScoreAlignment.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:00 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./SeqInterval.cc -o obj/SeqInterval.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:01 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./graph/DigraphPaths.cc -o obj/graph/DigraphPaths.o In file included from ./SeqInterval.cc:6:0: ./VecTemplate.h:380:2: warning: #warning is a GCC extension ./VecTemplate.h:380:2: warning: #warning Unable to implement BinaryMmap3(), defaulting to use BinaryRead3() instead. ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = seq_interval, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = seq_interval, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:01 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./graph/DotUtils.cc -o obj/graph/DotUtils.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:02 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./lookup/FlowAlignSummary.cc -o obj/lookup/FlowAlignSummary.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:02 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./lookup/Hit.cc -o obj/lookup/Hit.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:04 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./lookup/LookAlign.cc -o obj/lookup/LookAlign.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:04 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./lookup/LookupTable.cc -o obj/lookup/LookupTable.o In file included from ./lookup/LookAlign.cc:22:0: ./VecTemplate.h:380:2: warning: #warning is a GCC extension ./VecTemplate.h:380:2: warning: #warning Unable to implement BinaryMmap3(), defaulting to use BinaryRead3() instead. i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:04 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./lookup/LookupTableBuilder.cc -o obj/lookup/LookupTableBuilder.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:05 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./lookup/PerfectCount.cc -o obj/lookup/PerfectCount.o ./lookup/LookupTable.cc: In member function ‘void lookup_table::ReadChunk(int)’: ./lookup/LookupTable.cc:416:43: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./lookup/LookupTable.cc:420:70: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = GaplessAlign, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = GaplessAlign, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:05 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./lookup/PerfectLookup.cc -o obj/lookup/PerfectLookup.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:08 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./lookup/QueryLookupTableCore.cc -o obj/lookup/QueryLookupTableCore.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:09 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./pairwise_aligners/AlignFromMutmers.cc -o obj/pairwise_aligners/AlignFromMutmers.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:10 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./pairwise_aligners/AlignFromMutmersAndSW.cc -o obj/pairwise_aligners/AlignFromMutmersAndSW.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:10 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./pairwise_aligners/MakeAlignsMethod.cc -o obj/pairwise_aligners/MakeAlignsMethod.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:10 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./pairwise_aligners/SmithWatAffine.cc -o obj/pairwise_aligners/SmithWatAffine.o ./lookup/QueryLookupTableCore.cc: In function ‘void QueryLookupTableCore(int, char**)’: ./lookup/QueryLookupTableCore.cc:2021:78: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./lookup/LookAlign.h: In member function ‘void look_align::BinaryRead(int)’: ./lookup/LookAlign.h:264:67: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./lookup/LookAlign.h:266:42: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./lookup/LookAlign.h:270:48: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./lookup/LookAlign.h:271:51: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./lookup/LookAlign.h:277:34: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:10 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./pairwise_aligners/SmithWatFree.cc -o obj/pairwise_aligners/SmithWatFree.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:13 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/AlignHyperKmerPath.cc -o obj/paths/AlignHyperKmerPath.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:14 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/AlignPairsToHyper.cc -o obj/paths/AlignPairsToHyper.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:14 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/AlignSeqsToHyper.cc -o obj/paths/AlignSeqsToHyper.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:14 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/CleanHyper.cc -o obj/paths/CleanHyper.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:15 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/EvalUtils.cc -o obj/paths/EvalUtils.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:16 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/GlobalClean.cc -o obj/paths/GlobalClean.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:17 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/GlobalCleanAnnex.cc -o obj/paths/GlobalCleanAnnex.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:17 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/Hospital.cc -o obj/paths/Hospital.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:26 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/MakeAlignsPathsParallelX.cc -o obj/paths/MakeAlignsPathsParallelX.o In file included from ./paths/MakeAlignsPathsParallelX.cc:20:0: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./paths/MakeAlignsPathsParallelX.cc:229:35: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./paths/MakeAlignsPathsParallelX.cc:229:35: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./paths/MakeAlignsPathsParallelX.cc:229:35: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./paths/MakeAlignsPathsParallelX.cc:229:35: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./paths/MakeAlignsPathsParallelX.cc:229:35: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./paths/MakeAlignsPathsParallelX.cc:229:35: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./paths/MakeAlignsPathsParallelX.cc:229:35: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./paths/MakeAlignsPathsParallelX.cc:229:35: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./paths/MakeAlignsPathsParallelX.cc:229:35: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./paths/MakeAlignsPathsParallelX.cc:229:35: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./paths/MakeAlignsPathsParallelX.cc:229:35: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./paths/MakeAlignsPathsParallelX.cc:229:35: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./paths/MakeAlignsPathsParallelX.cc:229:35: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./paths/MakeAlignsPathsParallelX.cc:229:35: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./paths/MakeAlignsPathsParallelX.cc:229:35: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./paths/MakeAlignsPathsParallelX.cc:229:35: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./paths/MakeAlignsPathsParallelX.cc:229:35: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./paths/MakeAlignsPathsParallelX.cc:229:35: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./paths/MakeAlignsPathsParallelX.cc:229:35: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./paths/MakeAlignsPathsParallelX.cc:229:35: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./paths/MakeAlignsPathsParallelX.cc:229:35: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./paths/MakeAlignsPathsParallelX.cc:229:35: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./paths/MakeAlignsPathsParallelX.cc:229:35: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./paths/MakeAlignsPathsParallelX.cc:229:35: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./paths/MakeAlignsPathsParallelX.cc:229:35: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./paths/MakeAlignsPathsParallelX.cc:229:35: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./paths/MakeAlignsPathsParallelX.cc:229:35: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./paths/MakeAlignsPathsParallelX.cc:229:35: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./paths/MakeAlignsPathsParallelX.cc:229:35: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./paths/MakeAlignsPathsParallelX.cc:229:35: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./paths/MakeAlignsPathsParallelX.cc:229:35: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:27 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/PullApartHyperKmerPath.cc -o obj/paths/PullApartHyperKmerPath.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:32 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/ReadsToPathsCore.cc -o obj/paths/ReadsToPathsCore.o In file included from ./paths/ReadsToPathsCore.cc:26:0: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:32 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/ReadsToPathsCoreX.cc -o obj/paths/ReadsToPathsCoreX.o In file included from ./paths/ReadsToPathsCoreX.cc:21:0: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:33 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/SeqOnHyper.cc -o obj/paths/SeqOnHyper.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:34 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/SimpleLoop.cc -o obj/paths/SimpleLoop.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:35 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/Unjumble.cc -o obj/paths/Unjumble.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:38 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./system/Threads.cc -o obj/system/Threads.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:40 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./system/TimeUtils.cc -o obj/system/TimeUtils.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:40 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./system/WorklistUtils.cc -o obj/system/WorklistUtils.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:42 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/CorrectUnipaths.cc -o obj/paths/CorrectUnipaths.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:43 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/DumpHyper.cc -o obj/paths/DumpHyper.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:44 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/EvalHyper.cc -o obj/paths/EvalHyper.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:44 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/EvalTrusted.cc -o obj/paths/EvalTrusted.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:44 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/EvaluateCorrectedPairs.cc -o obj/paths/EvaluateCorrectedPairs.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:47 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./kmer_freq/EvaluateStrongKmers.cc -o obj/kmer_freq/EvaluateStrongKmers.o In file included from ./kmer_freq/EvaluateStrongKmers.cc:32:0: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:47 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./kmer_freq/KmerShortMap.cc -o obj/kmer_freq/KmerShortMap.o In file included from ./kmer_freq/KmerShortMap.cc:16:0: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:29: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:29: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:29: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:29: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:29: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:29: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:29: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:29: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:29: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:29: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:29: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:29: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:29: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:29: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:29: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:29: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:29: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:29: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:29: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KmerShortMap.cc:338:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:49 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./kmer_freq/WriteKmerFrequencies.cc -o obj/kmer_freq/WriteKmerFrequencies.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:51 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./FastaFileset.cc -o obj/FastaFileset.o In file included from ./kmer_freq/WriteKmerFrequencies.h:15:0, from ./kmer_freq/WriteKmerFrequencies.cc:14: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:29: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:29: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:29: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:29: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:29: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:29: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:29: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:29: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:29: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:29: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:29: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:29: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:29: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:29: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:29: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:29: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:29: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:29: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:29: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/WriteKmerFrequencies.cc:230:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:52 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./lookup/LookAlignFinder.cc -o obj/lookup/LookAlignFinder.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:53 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./lookup/LookAlignSort.cc -o obj/lookup/LookAlignSort.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:54 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./random/Shuffle.cc -o obj/random/Shuffle.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:55 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./solexa/ExtractSolexaReads.cc -o obj/solexa/ExtractSolexaReads.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:56 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./solexa/FourBase.cc -o obj/solexa/FourBase.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:57 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./solexa/FourBase2.cc -o obj/solexa/FourBase2.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:58 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./solexa/SolexaMetrics.cc -o obj/solexa/SolexaMetrics.o ./FeudalTemplate.h: In member function ‘void mastervec::MapAll(const String&) [with X = serfvec, A = four_base]’: ./FeudalTemplate.h:758:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In function ‘bool IsGoodFeudalFile(const String&, const X*, bool, bool) [with X = serfvec]’: ./FeudalTemplate.h:901:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::ReadAll(const String&, Bool, Bool) [with X = serfvec, A = four_base, Bool = unsigned char]’: ./FeudalTemplate.h:711:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:720:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:722:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Write(const String&, int, int) const [with X = serfvec, A = four_base]’: ./FeudalTemplate.h:372:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::SparseRead(const String&, const vec&, int, Bool, Bool) [with X = serfvec, A = four_base, Bool = unsigned char]’: ./FeudalTemplate.h:617:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = serfvec, A = four_base, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./solexa/SolexaMetrics.cc: In member function ‘void solexa_metric_db::WriteMetrics(const filename_t&, Bool) const’: ./solexa/SolexaMetrics.cc:165:29: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::MapAll(const String&) [with X = serfvec, A = four_base2]’: ./FeudalTemplate.h:758:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In function ‘bool IsGoodFeudalFile(const String&, const X*, bool, bool) [with X = serfvec]’: ./FeudalTemplate.h:901:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::ReadAll(const String&, Bool, Bool) [with X = serfvec, A = four_base2, Bool = unsigned char]’: ./FeudalTemplate.h:711:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:720:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:722:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Write(const String&, int, int) const [with X = serfvec, A = four_base2]’: ./FeudalTemplate.h:372:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::SparseRead(const String&, const vec&, int, Bool, Bool) [with X = serfvec, A = four_base2, Bool = unsigned char]’: ./FeudalTemplate.h:617:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = serfvec, A = four_base2, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:58:58 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./solexa/SolexaPosition.cc -o obj/solexa/SolexaPosition.o In file included from ./solexa/SolexaPosition.cc:5:0: ./VecTemplate.h:380:2: warning: #warning is a GCC extension ./VecTemplate.h:380:2: warning: #warning Unable to implement BinaryMmap3(), defaulting to use BinaryRead3() instead. i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:00 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./solexa/SolexaTools.cc -o obj/solexa/SolexaTools.o ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = SolexaPosition, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = SolexaPosition, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:01 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./solexa/TrustedBases.cc -o obj/solexa/TrustedBases.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:02 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./system/StdioWrapper.cc -o obj/system/StdioWrapper.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:03 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./util/BaitMap.cc -o obj/util/BaitMap.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:03 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./util/Fasta2Fastb.cc -o obj/util/Fasta2Fastb.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:04 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./util/Fastb2Fasta.cc -o obj/util/Fastb2Fasta.o ./util/BaitMap.cc: In member function ‘void BaitMap::add(int, longlong, longlong)’: ./util/BaitMap.cc:18:42: warning: format ‘%lu’ expects type ‘long unsigned int’, but argument 3 has type ‘size_t’ ./util/BaitMap.cc: In member function ‘bool BaitMap::lookup_from_genome(int, longlong, longlong, int*, longlong*, longlong*)’: ./util/BaitMap.cc:101:97: warning: format ‘%ld’ expects type ‘long int’, but argument 2 has type ‘long long int’ ./util/BaitMap.cc:101:97: warning: format ‘%ld’ expects type ‘long int’, but argument 3 has type ‘long long int’ ./util/BaitMap.cc: In member function ‘bool BaitMap::write(String)’: ./util/BaitMap.cc:253:55: warning: format ‘%ld’ expects type ‘long int’, but argument 3 has type ‘longlong’ ./util/BaitMap.cc:253:55: warning: format ‘%ld’ expects type ‘long int’, but argument 4 has type ‘longlong’ ./util/BaitMap.cc:253:55: warning: format ‘%ld’ expects type ‘long int’, but argument 5 has type ‘longlong’ ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = serfvec, A = four_base, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In function ‘bool IsGoodFeudalFile(const String&, const X*, bool, bool) [with X = serfvec]’: ./FeudalTemplate.h:901:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::ReadAll(const String&, Bool, Bool) [with X = basevector, A = unsigned int, Bool = unsigned char]’: ./FeudalTemplate.h:711:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:720:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:722:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = basevector, A = unsigned int, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::ReadAll(const String&, Bool, Bool) [with X = serfvec, A = four_base, Bool = unsigned char]’: ./FeudalTemplate.h:711:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:720:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:722:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:04 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./reporting/FastbStats.cc -o obj/reporting/FastbStats.o ./FeudalTemplate.h: In member function ‘void mastervec::Write(const String&, int, int) const [with X = String, A = char]’: ./FeudalTemplate.h:372:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./util/BaitMap.cc: In member function ‘bool BaitMap::read(String, bool)’: ./util/BaitMap.cc:209:37: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:05 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./kmer_freq/FindGenomicKmers.cc -o obj/kmer_freq/FindGenomicKmers.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:05 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./kmer_freq/FindKmerFrequencies.cc -o obj/kmer_freq/FindKmerFrequencies.o In file included from ./kmer_freq/WriteKmerFrequencies.h:15:0, from ./kmer_freq/FindGenomicKmers.cc:44: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 In file included from ./kmer_freq/WriteKmerFrequencies.h:15:0, from ./kmer_freq/FindKmerFrequencies.cc:24: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:05 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/FindLinks.cc -o obj/paths/FindLinks.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:06 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/FindLinks0.cc -o obj/paths/FindLinks0.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:08 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/FindUnipathLocs.cc -o obj/paths/FindUnipathLocs.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:10 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./kmer_freq/GcBiasCurve2.cc -o obj/kmer_freq/GcBiasCurve2.o In file included from ./kmer_freq/WriteKmerFrequencies.h:15:0, from ./kmer_freq/GcBiasCurve2.cc:42: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:12 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./kmer_freq/KmerFrequencyTable.cc -o obj/kmer_freq/KmerFrequencyTable.o In file included from ./kmer_freq/KmerFrequencyTable.cc:17:0: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:13 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/GenomeReadLocs.cc -o obj/paths/GenomeReadLocs.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:16 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/GenomeSizeFromUnibases.cc -o obj/paths/GenomeSizeFromUnibases.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:16 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/ReadsToPaths.cc -o obj/paths/ReadsToPaths.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:17 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/simulation/GenomeToPaths.cc -o obj/paths/simulation/GenomeToPaths.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:17 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./lookup/GetTruerReads.cc -o obj/lookup/GetTruerReads.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:19 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./lookup/AlignCollector.cc -o obj/lookup/AlignCollector.o In file included from ./lookup/AlignCollector.h:21:0, from ./lookup/AlignCollector.cc:14: ./VecTemplate.h:380:2: warning: #warning is a GCC extension ./VecTemplate.h:380:2: warning: #warning Unable to implement BinaryMmap3(), defaulting to use BinaryRead3() instead. i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:20 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./lookup/HitReceiver.cc -o obj/lookup/HitReceiver.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:21 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./lookup/ImperfectLookup.cc -o obj/lookup/ImperfectLookup.o In file included from ./lookup/AlignCollector.h:21:0, from ./lookup/ImperfectLookup.cc:14: ./VecTemplate.h:380:2: warning: #warning is a GCC extension ./VecTemplate.h:380:2: warning: #warning Unable to implement BinaryMmap3(), defaulting to use BinaryRead3() instead. i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:23 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./lookup/ImperfectLookupTable.cc -o obj/lookup/ImperfectLookupTable.o In file included from ./lookup/AlignCollector.h:21:0, from ./lookup/ImperfectLookup.h:54, from ./lookup/ImperfectLookupTable.cc:44: ./VecTemplate.h:380:2: warning: #warning is a GCC extension ./VecTemplate.h:380:2: warning: #warning Unable to implement BinaryMmap3(), defaulting to use BinaryRead3() instead. i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:24 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./solid/Solid.cc -o obj/solid/Solid.o ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = basevector, A = unsigned int, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = serfvec, A = unsigned char, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In function ‘bool IsGoodFeudalFile(const String&, const X*, bool, bool) [with X = serfvec]’: ./FeudalTemplate.h:901:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:24 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./kmer_freq/KAdjGraph.cc -o obj/kmer_freq/KAdjGraph.o In file included from ./SortKmers.h:20:0, from ./kmer_freq/KAdjGraph.cc:15: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KAdjGraph.cc:751:37: warning: invoking macro FOR_ALL_K_WITH_K_PLUS_1 argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KAdjGraph.cc:751:37: warning: invoking macro FOR_ALL_K_WITH_K_PLUS_1 argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KAdjGraph.cc:751:37: warning: invoking macro FOR_ALL_K_WITH_K_PLUS_1 argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KAdjGraph.cc:751:37: warning: invoking macro FOR_ALL_K_WITH_K_PLUS_1 argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KAdjGraph.cc:751:37: warning: invoking macro FOR_ALL_K_WITH_K_PLUS_1 argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:28 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./kmer_freq/KAdjsFromUnibases.cc -o obj/kmer_freq/KAdjsFromUnibases.o In file included from ./kmer_freq/KAdjsFromUnibases.cc:18:0: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:30 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/UnibaseUtils.cc -o obj/paths/UnibaseUtils.o In file included from ./SortKmers.h:20:0, from ./paths/UnibaseUtils.cc:11: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:31 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./PrettyPrintTable.cc -o obj/PrettyPrintTable.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:33 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/LibraryStatsFromUnibases.cc -o obj/paths/LibraryStatsFromUnibases.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:33 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/BigPicture.cc -o obj/paths/BigPicture.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:34 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/BridgeGaps.cc -o obj/paths/BridgeGaps.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:36 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/FindSubsumedReads.cc -o obj/paths/FindSubsumedReads.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:36 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/InternalMerge.cc -o obj/paths/InternalMerge.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:37 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/KmerPathOnHyper.cc -o obj/paths/KmerPathOnHyper.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:40 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -O1 -c ./paths/LocalizeReads.cc -o obj/paths/LocalizeReads.o In file included from ./paths/LocalizeReads.cc:249:0: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:43 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/LocalizeReadsAnnex.cc -o obj/paths/LocalizeReadsAnnex.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:48 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/LocalizeReadsAnnex2.cc -o obj/paths/LocalizeReadsAnnex2.o In file included from ./kmer_freq/WriteKmerFrequencies.h:15:0, from ./paths/LocalizeReadsAnnex2.cc:26: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:48 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/LocalizeReadsTail.cc -o obj/paths/LocalizeReadsTail.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:51 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/MergeAndTighten.cc -o obj/paths/MergeAndTighten.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 05:59:52 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/MergeCopyNumberTwo.cc -o obj/paths/MergeCopyNumberTwo.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:01 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/MergeTwoGreedy.cc -o obj/paths/MergeTwoGreedy.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:01 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/MuxFinder.cc -o obj/paths/MuxFinder.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:02 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/MuxSetup.cc -o obj/paths/MuxSetup.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:02 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/PairGraph.cc -o obj/paths/PairGraph.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:03 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/PairedWalk.cc -o obj/paths/PairedWalk.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:05 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/PoorlyCoveredPairs.cc -o obj/paths/PoorlyCoveredPairs.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:05 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/SharedCounter.cc -o obj/paths/SharedCounter.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:08 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/SubMuxGraphBuilder.cc -o obj/paths/SubMuxGraphBuilder.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:09 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/UnipathSeeds.cc -o obj/paths/UnipathSeeds.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:10 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/UniqueExtend.cc -o obj/paths/UniqueExtend.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:14 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/simulation/SimTrueSequenceBroker.cc -o obj/paths/simulation/SimTrueSequenceBroker.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:15 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./random/PoissonTail.cc -o obj/random/PoissonTail.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:15 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./lookup/LookAlignsToGaplessAligns.cc -o obj/lookup/LookAlignsToGaplessAligns.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:16 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./FetchReadsAmb.cc -o obj/FetchReadsAmb.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:16 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./lookup/MakeLookupTable.cc -o obj/lookup/MakeLookupTable.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:18 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/MakeNormalEdgeGraph.cc -o obj/paths/MakeNormalEdgeGraph.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:18 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/NormalEdgeGraph.cc -o obj/paths/NormalEdgeGraph.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:18 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/MakeRcDb.cc -o obj/paths/MakeRcDb.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:19 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./kmer_freq/KOccViewer.cc -o obj/kmer_freq/KOccViewer.o In file included from ./kmer_freq/KOccViewer.cc:16:0: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KOccViewer.cc:388:16: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KOccViewer.cc:388:16: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KOccViewer.cc:388:16: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KOccViewer.cc:388:16: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KOccViewer.cc:388:16: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KOccViewer.cc:388:16: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KOccViewer.cc:388:16: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KOccViewer.cc:388:16: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KOccViewer.cc:388:16: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KOccViewer.cc:388:16: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KOccViewer.cc:388:16: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KOccViewer.cc:388:16: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KOccViewer.cc:388:16: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KOccViewer.cc:388:16: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KOccViewer.cc:388:16: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KOccViewer.cc:388:16: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KOccViewer.cc:388:16: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KOccViewer.cc:388:16: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KOccViewer.cc:388:16: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KOccViewer.cc:388:16: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KOccViewer.cc:388:16: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KOccViewer.cc:388:16: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KOccViewer.cc:388:16: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KOccViewer.cc:388:16: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KOccViewer.cc:388:16: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KOccViewer.cc:388:16: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KOccViewer.cc:388:16: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KOccViewer.cc:388:16: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KOccViewer.cc:388:16: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KOccViewer.cc:388:16: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/KOccViewer.cc:388:16: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:19 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./kmer_freq/MarkGenomicKmersInReads.cc -o obj/kmer_freq/MarkGenomicKmersInReads.o In file included from ./kmer_freq/MarkGenomicKmersInReads.cc:39:0: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:22 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./kmer_freq/MarkTrustedUtils.cc -o obj/kmer_freq/MarkTrustedUtils.o In file included from ./kmer_freq/MarkTrustedUtils.h:43:0, from ./kmer_freq/MarkTrustedUtils.cc:10: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:26: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:26: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:26: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:26: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:26: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:26: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:26: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:26: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:26: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:26: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:26: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:26: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:26: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:26: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:26: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:26: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:26: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:26: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:26: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MarkTrustedUtils.cc:87:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:23 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./solexa/ExtractSolexaReadsLib.cc -o obj/solexa/ExtractSolexaReadsLib.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:24 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./system/HTMLUtils.cc -o obj/system/HTMLUtils.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:25 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./system/Utils.cc -o obj/system/Utils.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:26 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/MarkTrusted1.cc -o obj/paths/MarkTrusted1.o In file included from ./kmer_freq/WriteKmerFrequencies.h:15:0, from ./paths/MarkTrusted1.cc:46: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:26 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/MarkTrusted2.cc -o obj/paths/MarkTrusted2.o In file included from ./paths/MarkTrusted2.cc:51:0: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:26 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/MarkTrusted4.cc -o obj/paths/MarkTrusted4.o In file included from ./paths/MarkTrusted4.cc:51:0: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:27 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/MarkTrusted5.cc -o obj/paths/MarkTrusted5.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:27 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/MarkTrusted6.cc -o obj/paths/MarkTrusted6.o In file included from ./paths/MarkTrusted5.cc:54:0: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 In file included from ./paths/MarkTrusted6.cc:51:0: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:27 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./kmer_freq/MarkTrustedA1.cc -o obj/kmer_freq/MarkTrustedA1.o In file included from ./kmer_freq/MarkTrustedA1.cc:59:0: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:29 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./kmer_freq/MarkTrustedA2.cc -o obj/kmer_freq/MarkTrustedA2.o In file included from ./kmer_freq/MarkTrustedA2.cc:59:0: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:31 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./kmer_freq/MarkTrustedA3.cc -o obj/kmer_freq/MarkTrustedA3.o In file included from ./kmer_freq/MarkTrustedA3.cc:59:0: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:39 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./kmer_freq/MarkTrustedASub.cc -o obj/kmer_freq/MarkTrustedASub.o In file included from ./kmer_freq/MarkTrustedASub.cc:37:0: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:00:55 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./kmer_freq/MarkTrustedB1.cc -o obj/kmer_freq/MarkTrustedB1.o In file included from ./kmer_freq/MarkTrustedB1.cc:66:0: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:01:08 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./kmer_freq/MarkTrustedB2.cc -o obj/kmer_freq/MarkTrustedB2.o In file included from ./kmer_freq/MarkTrustedB2.cc:66:0: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:01:19 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./kmer_freq/MarkTrustedB3.cc -o obj/kmer_freq/MarkTrustedB3.o In file included from ./kmer_freq/MarkTrustedB3.cc:66:0: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:01:33 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/PanForGold.cc -o obj/paths/PanForGold.o In file included from ./paths/PanForGold.cc:24:0: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:01:35 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./graphics/Eps.cc -o obj/graphics/Eps.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:01:39 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/simulation/GenomePlacement.cc -o obj/paths/simulation/GenomePlacement.o In file included from ./paths/simulation/GenomePlacement.cc:12:0: ./VecTemplate.h:380:2: warning: #warning is a GCC extension ./VecTemplate.h:380:2: warning: #warning Unable to implement BinaryMmap3(), defaulting to use BinaryRead3() instead. i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:01:41 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/simulation/PathsToLocs.cc -o obj/paths/simulation/PathsToLocs.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:01:42 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/PrepareAllPathsInput.cc -o obj/paths/PrepareAllPathsInput.o ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = genome_placement, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = genome_placement, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./paths/LocalizeReads.cc: In function ‘int main(int, char**)’: ./paths/LocalizeReads.cc:351:5: note: variable tracking size limit exceeded with -fvar-tracking-assignments, retrying without ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = basevector, A = unsigned int, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::ReadAll(const String&, Bool, Bool) [with X = KmerPath, A = KmerPathInterval, Bool = unsigned char]’: ./FeudalTemplate.h:711:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:720:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:722:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In function ‘bool IsGoodFeudalFile(const String&, const X*, bool, bool) [with X = KmerPath]’: ./FeudalTemplate.h:901:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = KmerPath, A = KmerPathInterval, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::ReadAll(const String&, Bool, Bool) [with X = serfvec >, A = std::pair, Bool = unsigned char]’: ./FeudalTemplate.h:711:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:720:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:722:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In function ‘bool IsGoodFeudalFile(const String&, const X*, bool, bool) [with X = serfvec >]’: ./FeudalTemplate.h:901:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = serfvec >, A = std::pair, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:01:42 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/simulation/TrueUnipathCoverage.cc -o obj/paths/simulation/TrueUnipathCoverage.o ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = KmerPath, A = KmerPathInterval, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In function ‘bool IsGoodFeudalFile(const String&, const X*, bool, bool) [with X = KmerPath]’: ./FeudalTemplate.h:901:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Write(const String&, int, int) const [with X = serfvec >, A = std::pair]’: ./FeudalTemplate.h:372:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:01:45 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/UnipatherBig.cc -o obj/paths/UnipatherBig.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:01:48 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/simulation/PrepareGenome.cc -o obj/paths/simulation/PrepareGenome.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:01:51 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./system/MiscUtil.cc -o obj/system/MiscUtil.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:01:52 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./kmer_freq/MakeProvisionalChanges.cc -o obj/kmer_freq/MakeProvisionalChanges.o In file included from ./kmer_freq/WriteKmerFrequencies.h:15:0, from ./kmer_freq/MakeProvisionalChanges.cc:16: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:29: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:29: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:29: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:29: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:29: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:29: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:29: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:29: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:29: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:29: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:29: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:29: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:29: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:29: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:29: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:29: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:29: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:29: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:29: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/MakeProvisionalChanges.cc:273:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:01:58 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./kmer_freq/ProvisionalEdits.cc -o obj/kmer_freq/ProvisionalEdits.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:01:59 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./math/Combinatorics.cc -o obj/math/Combinatorics.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:02:00 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/BaseErrorProb.cc -o obj/paths/BaseErrorProb.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:02:02 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./util/Quala2Qualb.cc -o obj/util/Quala2Qualb.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:02:06 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./util/Qualb2Quala.cc -o obj/util/Qualb2Quala.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:02:07 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./lookup/QueryLookupTable.cc -o obj/lookup/QueryLookupTable.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:02:07 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/RePath.cc -o obj/paths/RePath.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:02:08 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/RecoverUnipaths.cc -o obj/paths/RecoverUnipaths.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:02:09 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/NearUnipathErrors.cc -o obj/paths/NearUnipathErrors.o In file included from ./paths/RePath.cc:53:0: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 In file included from ./paths/GetNexts.h:19:0, from ./paths/RecoverUnipaths.cc:21: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:02:09 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/RemoveSuspiciousReads2.cc -o obj/paths/RemoveSuspiciousReads2.o In file included from ./paths/RemoveSuspiciousReads2.cc:42:0: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = basevector, A = unsigned int, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Write(const String&, int, int) const [with X = KmerPath, A = KmerPathInterval]’: ./FeudalTemplate.h:372:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::ReadAll(const String&, Bool, Bool) [with X = basevector, A = unsigned int, Bool = unsigned char]’: ./FeudalTemplate.h:711:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:720:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:722:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:02:10 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/UnipathCoverageCore.cc -o obj/paths/UnipathCoverageCore.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:02:13 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/RescueKmers.cc -o obj/paths/RescueKmers.o In file included from ./paths/RescueKmers.cc:23:0: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:02:17 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/Shaver.cc -o obj/paths/Shaver.o In file included from ./kmer_freq/KAdjGraph.h:18:0, from ./paths/Shaver.cc:17: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:02:25 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./lookup/ShortQueryLookup.cc -o obj/lookup/ShortQueryLookup.o In file included from ./lookup/AlignCollector.h:21:0, from ./lookup/ShortQueryLookup.cc:31: ./VecTemplate.h:380:2: warning: #warning is a GCC extension ./VecTemplate.h:380:2: warning: #warning Unable to implement BinaryMmap3(), defaulting to use BinaryRead3() instead. i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:02:30 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./AlignmentProfile.cc -o obj/AlignmentProfile.o ./FeudalTemplate.h: In member function ‘void mastervec::ReadAll(const String&, Bool, Bool) [with X = basevector, A = unsigned int, Bool = unsigned char]’: ./FeudalTemplate.h:711:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:720:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:722:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = basevector, A = unsigned int, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:02:31 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/simulation/ErrorGenerator.cc -o obj/paths/simulation/ErrorGenerator.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:02:34 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/simulation/SimulateReads.cc -o obj/paths/simulation/SimulateReads.o In file included from ./paths/simulation/SimulateReads.cc:181:0: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/EvaluateStrongKmers.cc: In function ‘int main(int, char**)’: ./kmer_freq/EvaluateStrongKmers.cc:306:5: note: variable tracking size limit exceeded with -fvar-tracking-assignments, retrying without i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:02:35 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/Singe.cc -o obj/paths/Singe.o In file included from ./paths/Singe.cc:44:0: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:02:35 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/StandardScaffold.cc -o obj/paths/StandardScaffold.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:02:37 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/TrustedFromQuals.cc -o obj/paths/TrustedFromQuals.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:02:43 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/UnibaseCopyNumber.cc -o obj/paths/UnibaseCopyNumber.o In file included from ./paths/UnibaseCopyNumber.cc:36:0: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:02:46 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./BinsVec.cc -o obj/BinsVec.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:02:47 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/UnibaseCopyNumberIdeal.cc -o obj/paths/UnibaseCopyNumberIdeal.o In file included from ./lookup/AlignCollector.h:21:0, from ./lookup/ImperfectLookup.h:54, from ./paths/UnibaseCopyNumberIdeal.cc:35: ./VecTemplate.h:380:2: warning: #warning is a GCC extension ./VecTemplate.h:380:2: warning: #warning Unable to implement BinaryMmap3(), defaulting to use BinaryRead3() instead. ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = basevector, A = unsigned int, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Write(const String&, int, int) const [with X = serfvec, A = pdf_entry]’: ./FeudalTemplate.h:372:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:02:48 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./kmer_freq/UnibasesFromTrustedKAdjs.cc -o obj/kmer_freq/UnibasesFromTrustedKAdjs.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:02:53 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/UnipathEval.cc -o obj/paths/UnipathEval.o In file included from ./kmer_freq/UnibasesFromTrustedKAdjs.cc:41:0: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 In file included from ./kmer_freq/UnibasesFromTrustedKAdjs.cc:46:0: ./VecTemplate.h:380:2: warning: #warning is a GCC extension ./VecTemplate.h:380:2: warning: #warning Unable to implement BinaryMmap3(), defaulting to use BinaryRead3() instead. ./kmer_freq/UnibasesFromTrustedKAdjs.cc:120:22: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/UnibasesFromTrustedKAdjs.cc:120:22: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/UnibasesFromTrustedKAdjs.cc:120:22: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/UnibasesFromTrustedKAdjs.cc:120:22: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/UnibasesFromTrustedKAdjs.cc:120:22: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/UnibasesFromTrustedKAdjs.cc:120:22: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/UnibasesFromTrustedKAdjs.cc:120:22: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/UnibasesFromTrustedKAdjs.cc:120:22: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/UnibasesFromTrustedKAdjs.cc:120:22: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/UnibasesFromTrustedKAdjs.cc:120:22: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/UnibasesFromTrustedKAdjs.cc:120:22: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/UnibasesFromTrustedKAdjs.cc:120:22: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/UnibasesFromTrustedKAdjs.cc:120:22: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/UnibasesFromTrustedKAdjs.cc:120:22: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/UnibasesFromTrustedKAdjs.cc:120:22: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/UnibasesFromTrustedKAdjs.cc:120:22: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/UnibasesFromTrustedKAdjs.cc:120:22: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/UnibasesFromTrustedKAdjs.cc:120:22: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/UnibasesFromTrustedKAdjs.cc:120:22: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/UnibasesFromTrustedKAdjs.cc:120:22: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/UnibasesFromTrustedKAdjs.cc:120:22: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/UnibasesFromTrustedKAdjs.cc:120:22: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/UnibasesFromTrustedKAdjs.cc:120:22: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/UnibasesFromTrustedKAdjs.cc:120:22: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/UnibasesFromTrustedKAdjs.cc:120:22: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/UnibasesFromTrustedKAdjs.cc:120:22: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/UnibasesFromTrustedKAdjs.cc:120:22: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/UnibasesFromTrustedKAdjs.cc:120:22: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/UnibasesFromTrustedKAdjs.cc:120:22: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/UnibasesFromTrustedKAdjs.cc:120:22: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./kmer_freq/UnibasesFromTrustedKAdjs.cc:120:22: warning: invoking macro FOR_ALL_K argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 In file included from ./lookup/AlignCollector.h:21:0, from ./lookup/ImperfectLookup.h:54, from ./paths/UnipathEval.cc:85: ./VecTemplate.h:380:2: warning: #warning is a GCC extension ./VecTemplate.h:380:2: warning: #warning Unable to implement BinaryMmap3(), defaulting to use BinaryRead3() instead. i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:02:53 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/UnipathLocs.cc -o obj/paths/UnipathLocs.o In file included from ./paths/UnipathLocs.cc:28:0: ./VecTemplate.h:380:2: warning: #warning is a GCC extension ./VecTemplate.h:380:2: warning: #warning Unable to implement BinaryMmap3(), defaulting to use BinaryRead3() instead. ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = KmerPath, A = KmerPathInterval, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In function ‘bool IsGoodFeudalFile(const String&, const X*, bool, bool) [with X = KmerPath]’: ./FeudalTemplate.h:901:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::ReadAll(const String&, Bool, Bool) [with X = serfvec, A = pdf_entry, Bool = unsigned char]’: ./FeudalTemplate.h:711:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:720:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:722:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In function ‘bool IsGoodFeudalFile(const String&, const X*, bool, bool) [with X = serfvec]’: ./FeudalTemplate.h:901:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = serfvec, A = pdf_entry, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Write(const String&, int, int) const [with X = serfvec, A = int]’: ./FeudalTemplate.h:372:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:02:53 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/Unipather.cc -o obj/paths/Unipather.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:02:57 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/UnipathsFromTrustedKmers.cc -o obj/paths/UnipathsFromTrustedKmers.o ./FeudalTemplate.h: In member function ‘void mastervec::ReadAll(const String&, Bool, Bool) [with X = basevector, A = unsigned int, Bool = unsigned char]’: ./FeudalTemplate.h:711:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:720:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:722:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = basevector, A = unsigned int, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::ReadAll(const String&, Bool, Bool) [with X = KmerPath, A = KmerPathInterval, Bool = unsigned char]’: ./FeudalTemplate.h:711:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:720:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:722:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In function ‘bool IsGoodFeudalFile(const String&, const X*, bool, bool) [with X = KmerPath]’: ./FeudalTemplate.h:901:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = KmerPath, A = KmerPathInterval, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::ReadAll(const String&, Bool, Bool) [with X = serfvec, A = pdf_entry, Bool = unsigned char]’: ./FeudalTemplate.h:711:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:720:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h:722:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In function ‘bool IsGoodFeudalFile(const String&, const X*, bool, bool) [with X = serfvec]’: ./FeudalTemplate.h:901:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./FeudalTemplate.h: In member function ‘void mastervec::Read(const String&, const vec&, int, Bool, Bool, Bool) [with X = serfvec, A = pdf_entry, Bool = unsigned char]’: ./FeudalTemplate.h:465:3: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer<10000>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer<10000>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer<4000>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer<4000>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer<2000>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer<2000>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer<1600>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer<1600>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer<1200>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer<1200>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer<1000>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer<1000>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer<500>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer<500>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer<200>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer<200>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer<192>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer<192>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer<100>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer<100>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer<96>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer<96>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer<80>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer<80>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer<68>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer<68>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer<65>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer<65>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer<64>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer<64>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer<52>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer<52>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer<49>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer<49>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer<48>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer<48>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer<40>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer<40>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer<36>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer<36>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer<32>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer<32>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer<29>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer<29>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer<28>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer<28>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer<26>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer<26>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer<24>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer<24>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer<21>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer<21>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer<20>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer<20>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer<19>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer<19>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer<16>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer<16>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer<12>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer<12>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadRange2Or3(const String&, longlong, longlong, vec&, int) [with T = kmer<8>, longlong = long long int]’: ./VecTemplate.h:266:20: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result ./VecTemplate.h: In function ‘void BinaryReadSubset2Or3(const String&, const vec&, vec&, Bool, int) [with T = kmer<8>, Bool = unsigned char]’: ./VecTemplate.h:229:5: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’, declared with attribute warn_unused_result i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:02:58 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./lookup/UniquifyAligns2.cc -o obj/lookup/UniquifyAligns2.o cp -u ./auxfiles/*.jar bin/auxfiles cp -u ./auxfiles/*.js bin/auxfiles i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:03:05 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./lookup/AlignUtils.cc -o obj/lookup/AlignUtils.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:03:05 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/DisplayUtils.cc -o obj/paths/DisplayUtils.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:03:07 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/HKPScaffolding.cc -o obj/paths/HKPScaffolding.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:03:11 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/HKPViewer.cc -o obj/paths/HKPViewer.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:03:11 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/NormalEdgeScaffold.cc -o obj/paths/NormalEdgeScaffold.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:03:12 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/PseudoUnipathGapCloser.cc -o obj/paths/PseudoUnipathGapCloser.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:03:12 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/PseudoUnipatherLib.cc -o obj/paths/PseudoUnipatherLib.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:03:13 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/ViewHyper.cc -o obj/paths/ViewHyper.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:03:14 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/Vote.cc -o obj/paths/Vote.o i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:03:16 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/RunAllPaths.cc -o obj/paths/RunAllPaths.o In file included from ./paths/Vote.cc:24:0: ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:38: warning: invoking macro FOR_ALL_KSHAPES_A argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_B argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_C argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_D argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_E argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_F argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_G argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_H argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 ./KmerRecord.h:1015:1: warning: invoking macro FOR_ALL_KSHAPES_I argument 2: empty macro arguments are undefined in ISO C90 and ISO C++98 i686-pc-linux-gnu-g++ -Wextra -Wall -Wno-unused -Wno-deprecated -ansi -pedantic -Wno-long-long -Wctor-dtor-privacy -Wsign-promo -Woverloaded-virtual -Wendif-labels -Wno-empty-body -Wno-parentheses -Wno-array-bounds -O3 -ggdb3 -DMAKE_DATE='"Tue Aug 31 06:03:16 CEST 2010"' -DMAKE_OS_RELEASE='"2.6.35.3+"' -DMAKE_RELEASE='"3.0"' -DNEW_MAKEFILE -imacros system/BigFileDefines.h -ftemplate-depth-50 -fno-strict-aliasing -mieee-fp -fno-nonansi-builtins -iquote . -DHAVE_PTHREADS -c ./paths/RunAllPathsCommon.cc -o obj/paths/RunAllPathsCommon.o /bin/rm -f obj/lib_BitvectorOp_temp.a ar -qc obj/lib_BitvectorOp_temp.a obj/Basevector.o obj/Bitvector.o obj/Feudal.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/MemberOf.o obj/ParseRange.o obj/ParseSet.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecString.o obj/charTranslations.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/random/Random.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/BitvectorOp.o obj/util/Kronos.o bin/checkLock bin/BitvectorOp i686-pc-linux-gnu-g++ -ggdb3 -o bin/BitvectorOp obj/util/BitvectorOp.o -L. -L. -Lobj -l_BitvectorOp_temp /bin/rm obj/lib_BitvectorOp_temp.a /bin/rm -f obj/lib_BuildUnipathLinkGraphs_temp.a ar -qc obj/lib_BuildUnipathLinkGraphs_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/Equiv.o obj/FastIfstream.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/PairsHandler.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadLocation.o obj/ReadPairing.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecOverlap.o obj/VecString.o obj/charTranslations.o obj/graph/Digraph.o obj/graphics/BasicGraphics.o obj/graphics/Color.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/pairwise_aligners/MatchList.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/pairwise_aligners/PerfectAligner.o obj/pairwise_aligners/SmithWatBandedA.o obj/paths/AddSuperReads.o obj/paths/AlignAndMerge.o obj/paths/BuildUnipathLinkGraphs.o obj/paths/CompletedInsert.o obj/paths/ExtendUnipathSeqs.o obj/paths/FindClosures.o obj/paths/GapSkip.o obj/paths/HyperKmerPath.o obj/paths/HyperKmerPathCleaner.o obj/paths/ImproperMerge.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathBreadthSearcher.o obj/paths/KmerPathDatabase.o obj/paths/KmerPathInterval.o obj/paths/KmerPathMuxSearcher.o obj/paths/Mux.o obj/paths/MuxGraph.o obj/paths/MuxSearchAgent.o obj/paths/MuxSearchPolicy.o obj/paths/MuxToPath.o obj/paths/MuxWalkGraph.o obj/paths/NegativeGapValidator.o obj/paths/OffsetTracker.o obj/paths/PairedPair.o obj/paths/PathEmbedding.o obj/paths/PathWalk.o obj/paths/PdfEntry.o obj/paths/PileReadsOnPath.o obj/paths/ReadFillDatabase.o obj/paths/ReadFillRecord.o obj/paths/SimpleWalk.o obj/paths/SubsumptionList.o obj/paths/Unipath.o obj/paths/UnipathNhood.o obj/paths/UnipathNhoodCommon.o obj/paths/UnipathSeq.o obj/paths/UnipathSeqBuilder.o obj/paths/VerifyGapLengths.o obj/paths/WalkPlot.o obj/paths/simulation/Placement.o obj/random/Bernoulli.o obj/random/NormalDistribution.o obj/random/NormalRandom.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o /bin/rm -f obj/lib_CleanHyper_temp.a ar -qc obj/lib_CleanHyper_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/BinaryIO.o obj/Bitvector.o obj/BlockAlign.o obj/Charvector.o obj/CompressedSequence.o obj/Equiv.o obj/FastIfstream.o obj/FastaConverter.o obj/FastaFilestream.o obj/FastaFilestreamPreview.o obj/FastaNameParser.o obj/FastaVerifier.o obj/FetchReads.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/PairsHandler.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadLocation.o obj/ReadPairing.o obj/ScoreAlignment.o obj/SeqInterval.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecOverlap.o obj/VecString.o obj/charTranslations.o obj/graph/Digraph.o obj/graph/DigraphPaths.o obj/graph/DotUtils.o obj/graphics/BasicGraphics.o obj/graphics/Color.o obj/lookup/FlowAlignSummary.o obj/lookup/Hit.o obj/lookup/LookAlign.o obj/lookup/LookupTable.o obj/lookup/LookupTableBuilder.o obj/lookup/PerfectCount.o obj/lookup/PerfectLookup.o obj/lookup/QueryLookupTableCore.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/pairwise_aligners/AlignFromMutmers.o obj/pairwise_aligners/AlignFromMutmersAndSW.o obj/pairwise_aligners/MakeAlignsMethod.o obj/pairwise_aligners/MatchList.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/pairwise_aligners/PerfectAligner.o obj/pairwise_aligners/SmithWatAffine.o obj/pairwise_aligners/SmithWatBandedA.o obj/pairwise_aligners/SmithWatFree.o obj/paths/AddSuperReads.o obj/paths/AlignAndMerge.o obj/paths/AlignHyperKmerPath.o obj/paths/AlignPairsToHyper.o obj/paths/AlignSeqsToHyper.o obj/paths/CleanHyper.o obj/paths/CompletedInsert.o obj/paths/EvalUtils.o obj/paths/ExtendUnipathSeqs.o obj/paths/FindClosures.o obj/paths/GapSkip.o obj/paths/GlobalClean.o obj/paths/GlobalCleanAnnex.o obj/paths/Hospital.o obj/paths/HyperKmerPath.o obj/paths/HyperKmerPathCleaner.o obj/paths/ImproperMerge.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathBreadthSearcher.o obj/paths/KmerPathDatabase.o obj/paths/KmerPathInterval.o obj/paths/KmerPathMuxSearcher.o obj/paths/MakeAlignsPathsParallelX.o obj/paths/Mux.o obj/paths/MuxGraph.o obj/paths/MuxSearchAgent.o obj/paths/MuxSearchPolicy.o obj/paths/MuxToPath.o obj/paths/MuxWalkGraph.o obj/paths/NegativeGapValidator.o obj/paths/OffsetTracker.o obj/paths/PairedPair.o obj/paths/PathEmbedding.o obj/paths/PathWalk.o obj/paths/PdfEntry.o obj/paths/PileReadsOnPath.o obj/paths/PullApartHyperKmerPath.o obj/paths/ReadFillDatabase.o obj/paths/ReadFillRecord.o obj/paths/ReadsToPathsCore.o obj/paths/ReadsToPathsCoreX.o obj/paths/SeqOnHyper.o obj/paths/SimpleLoop.o obj/paths/SimpleWalk.o obj/paths/SubsumptionList.o obj/paths/Unipath.o obj/paths/UnipathSeq.o obj/paths/UnipathSeqBuilder.o obj/paths/Unjumble.o obj/paths/VerifyGapLengths.o obj/paths/WalkPlot.o obj/random/Bernoulli.o obj/random/NormalDistribution.o obj/random/NormalRandom.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/Threads.o obj/system/TimeUtils.o obj/system/TraceVal.o obj/system/Types.o obj/system/WorklistUtils.o obj/util/Kronos.o bin/checkLock bin/BuildUnipathLinkGraphs i686-pc-linux-gnu-g++ -ggdb3 -o bin/BuildUnipathLinkGraphs obj/paths/BuildUnipathLinkGraphs.o -L. -L. -Lobj -l_BuildUnipathLinkGraphs_temp /bin/rm -f obj/lib_CorrectUnipaths_temp.a ar -qc obj/lib_CorrectUnipaths_temp.a obj/Basevector.o obj/Bitvector.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/MemberOf.o obj/ParseRange.o obj/ParseSet.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecString.o obj/charTranslations.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/paths/CorrectUnipaths.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathInterval.o obj/paths/PathEmbedding.o obj/random/Random.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o /bin/rm obj/lib_BuildUnipathLinkGraphs_temp.a /bin/rm -f obj/lib_DumpHyper_temp.a bin/checkLock bin/CleanHyper i686-pc-linux-gnu-g++ -ggdb3 -o bin/CleanHyper obj/paths/CleanHyper.o -L. -L. -Lobj -lpthread -l_CleanHyper_temp bin/checkLock bin/CorrectUnipaths ar -qc obj/lib_DumpHyper_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/BinaryIO.o obj/Bitvector.o obj/BlockAlign.o obj/Charvector.o obj/CompressedSequence.o obj/Equiv.o obj/FastIfstream.o obj/FastaConverter.o obj/FastaFilestream.o obj/FastaFilestreamPreview.o obj/FastaNameParser.o obj/FastaVerifier.o obj/FetchReads.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/PairsHandler.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadLocation.o obj/ReadPairing.o obj/ScoreAlignment.o obj/SeqInterval.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecOverlap.o obj/VecString.o obj/charTranslations.o obj/graph/Digraph.o obj/graph/DigraphPaths.o obj/graph/DotUtils.o obj/graphics/BasicGraphics.o obj/graphics/Color.o obj/lookup/FlowAlignSummary.o obj/lookup/Hit.o obj/lookup/LookAlign.o obj/lookup/LookupTable.o obj/lookup/LookupTableBuilder.o obj/lookup/PerfectCount.o obj/lookup/PerfectLookup.o obj/lookup/QueryLookupTableCore.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/pairwise_aligners/AlignFromMutmers.o obj/pairwise_aligners/AlignFromMutmersAndSW.o obj/pairwise_aligners/MakeAlignsMethod.o obj/pairwise_aligners/MatchList.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/pairwise_aligners/PerfectAligner.o obj/pairwise_aligners/SmithWatAffine.o obj/pairwise_aligners/SmithWatBandedA.o obj/pairwise_aligners/SmithWatFree.o obj/paths/AddSuperReads.o obj/paths/AlignAndMerge.o obj/paths/AlignHyperKmerPath.o obj/paths/AlignPairsToHyper.o obj/paths/AlignSeqsToHyper.o obj/paths/CompletedInsert.o obj/paths/DumpHyper.o obj/paths/EvalUtils.o obj/paths/ExtendUnipathSeqs.o obj/paths/FindClosures.o obj/paths/GapSkip.o obj/paths/HyperKmerPath.o obj/paths/HyperKmerPathCleaner.o obj/paths/ImproperMerge.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathBreadthSearcher.o obj/paths/KmerPathDatabase.o obj/paths/KmerPathInterval.o obj/paths/KmerPathMuxSearcher.o obj/paths/MakeAlignsPathsParallelX.o obj/paths/Mux.o obj/paths/MuxGraph.o obj/paths/MuxSearchAgent.o obj/paths/MuxSearchPolicy.o obj/paths/MuxToPath.o obj/paths/MuxWalkGraph.o obj/paths/NegativeGapValidator.o obj/paths/OffsetTracker.o obj/paths/PairedPair.o obj/paths/PathEmbedding.o obj/paths/PathWalk.o obj/paths/PileReadsOnPath.o obj/paths/ReadFillDatabase.o obj/paths/ReadFillRecord.o obj/paths/ReadsToPathsCore.o obj/paths/ReadsToPathsCoreX.o obj/paths/SeqOnHyper.o obj/paths/SimpleWalk.o obj/paths/SubsumptionList.o obj/paths/Unipath.o obj/paths/UnipathSeq.o obj/paths/UnipathSeqBuilder.o obj/paths/VerifyGapLengths.o obj/paths/WalkPlot.o obj/random/Bernoulli.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/Threads.o obj/system/TimeUtils.o obj/system/TraceVal.o obj/system/Types.o obj/system/WorklistUtils.o obj/util/Kronos.o i686-pc-linux-gnu-g++ -ggdb3 -o bin/CorrectUnipaths obj/paths/CorrectUnipaths.o -L. -L. -Lobj -l_CorrectUnipaths_temp /bin/rm -f obj/lib_EvalHyper_temp.a ar -qc obj/lib_EvalHyper_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/BinaryIO.o obj/Bitvector.o obj/BlockAlign.o obj/Charvector.o obj/CompressedSequence.o obj/Equiv.o obj/FastIfstream.o obj/FastaConverter.o obj/FastaFilestream.o obj/FastaFilestreamPreview.o obj/FastaNameParser.o obj/FastaVerifier.o obj/FetchReads.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/PairsHandler.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadLocation.o obj/ReadPairing.o obj/ScoreAlignment.o obj/SeqInterval.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecOverlap.o obj/VecString.o obj/charTranslations.o obj/graph/Digraph.o obj/graph/DigraphPaths.o obj/graph/DotUtils.o obj/graphics/BasicGraphics.o obj/graphics/Color.o obj/lookup/FlowAlignSummary.o obj/lookup/Hit.o obj/lookup/LookAlign.o obj/lookup/LookupTable.o obj/lookup/LookupTableBuilder.o obj/lookup/PerfectCount.o obj/lookup/PerfectLookup.o obj/lookup/QueryLookupTableCore.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/pairwise_aligners/AlignFromMutmers.o obj/pairwise_aligners/AlignFromMutmersAndSW.o obj/pairwise_aligners/MakeAlignsMethod.o obj/pairwise_aligners/MatchList.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/pairwise_aligners/PerfectAligner.o obj/pairwise_aligners/SmithWatAffine.o obj/pairwise_aligners/SmithWatBandedA.o obj/pairwise_aligners/SmithWatFree.o obj/paths/AddSuperReads.o obj/paths/AlignAndMerge.o obj/paths/AlignHyperKmerPath.o obj/paths/AlignPairsToHyper.o obj/paths/AlignSeqsToHyper.o obj/paths/CompletedInsert.o obj/paths/EvalHyper.o obj/paths/EvalUtils.o obj/paths/ExtendUnipathSeqs.o obj/paths/FindClosures.o obj/paths/GapSkip.o obj/paths/HyperKmerPath.o obj/paths/HyperKmerPathCleaner.o obj/paths/ImproperMerge.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathBreadthSearcher.o obj/paths/KmerPathDatabase.o obj/paths/KmerPathInterval.o obj/paths/KmerPathMuxSearcher.o obj/paths/MakeAlignsPathsParallelX.o obj/paths/Mux.o obj/paths/MuxGraph.o obj/paths/MuxSearchAgent.o obj/paths/MuxSearchPolicy.o obj/paths/MuxToPath.o obj/paths/MuxWalkGraph.o obj/paths/NegativeGapValidator.o obj/paths/OffsetTracker.o obj/paths/PairedPair.o obj/paths/PathEmbedding.o obj/paths/PathWalk.o obj/paths/PileReadsOnPath.o obj/paths/ReadFillDatabase.o obj/paths/ReadFillRecord.o obj/paths/ReadsToPathsCore.o obj/paths/ReadsToPathsCoreX.o obj/paths/SeqOnHyper.o obj/paths/SimpleWalk.o obj/paths/SubsumptionList.o obj/paths/Unipath.o obj/paths/UnipathSeq.o obj/paths/UnipathSeqBuilder.o obj/paths/VerifyGapLengths.o obj/paths/WalkPlot.o obj/random/Bernoulli.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/Threads.o obj/system/TimeUtils.o obj/system/TraceVal.o obj/system/Types.o obj/system/WorklistUtils.o obj/util/Kronos.o In file included from ./kmer_freq/MarkTrustedB2.cc:74:0: ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function /bin/rm obj/lib_CorrectUnipaths_temp.a bin/checkLock bin/EvalHyper /bin/rm -f obj/lib_EvalTrusted_temp.a i686-pc-linux-gnu-g++ -ggdb3 -o bin/EvalHyper obj/paths/EvalHyper.o -L. -L. -Lobj -lpthread -l_EvalHyper_temp ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function /bin/rm -f obj/lib_EvaluateCorrectedPairs_temp.a ar -qc obj/lib_EvalTrusted_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/FastIfstream.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecString.o obj/charTranslations.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/paths/EvalTrusted.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathInterval.o obj/paths/MakeAlignsPathsParallelX.o obj/paths/PathEmbedding.o obj/paths/ReadsToPathsCoreX.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/Threads.o obj/system/TraceVal.o obj/system/Types.o obj/system/WorklistUtils.o obj/util/Kronos.o bin/checkLock bin/DumpHyper ar -qc obj/lib_EvaluateCorrectedPairs_temp.a obj/Alignment.o obj/Basevector.o obj/BlockAlign.o obj/FastIfstream.o obj/Feudal.o obj/FeudalReadPart.o obj/IndexedAlignmentPlusVector.o obj/MemberOf.o obj/PackAlign.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadPairing.o obj/ScoreAlignment.o obj/SeqInterval.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecString.o obj/charTranslations.o obj/lookup/Hit.o obj/lookup/LookAlign.o obj/lookup/LookupTable.o obj/lookup/PerfectCount.o obj/lookup/PerfectLookup.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/pairwise_aligners/Mutmer.o obj/paths/EvaluateCorrectedPairs.o obj/random/Random.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o i686-pc-linux-gnu-g++ -ggdb3 -o bin/DumpHyper obj/paths/DumpHyper.o -L. -L. -Lobj -lpthread -l_DumpHyper_temp bin/checkLock bin/EvaluateCorrectedPairs i686-pc-linux-gnu-g++ -ggdb3 -o bin/EvaluateCorrectedPairs obj/paths/EvaluateCorrectedPairs.o -L. -L. -Lobj -l_EvaluateCorrectedPairs_temp bin/checkLock bin/EvalTrusted i686-pc-linux-gnu-g++ -ggdb3 -o bin/EvalTrusted obj/paths/EvalTrusted.o -L. -L. -Lobj -lpthread -l_EvalTrusted_temp /bin/rm obj/lib_EvaluateCorrectedPairs_temp.a /bin/rm -f obj/lib_EvaluateStrongKmers_temp.a ar -qc obj/lib_EvaluateStrongKmers_temp.a obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/FastIfstream.o obj/Feudal.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/ParseRange.o obj/ParseSet.o obj/Qualvector.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecString.o obj/charTranslations.o obj/kmer_freq/EvaluateStrongKmers.o obj/kmer_freq/KmerShortMap.o obj/kmer_freq/WriteKmerFrequencies.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/paths/KmerPathInterval.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o /bin/rm obj/lib_DumpHyper_temp.a /bin/rm -f obj/lib_ExtractSolexaReads_temp.a ar -qc obj/lib_ExtractSolexaReads_temp.a obj/Alignment.o obj/Basevector.o obj/Bitvector.o obj/BlockAlign.o obj/Charvector.o obj/CompressedSequence.o obj/FastIfstream.o obj/FastaConverter.o obj/FastaFileset.o obj/FastaFilestream.o obj/FastaFilestreamPreview.o obj/FastaNameParser.o obj/FastaVerifier.o obj/FetchReads.o obj/Feudal.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/IndexedAlignmentPlusVector.o obj/MemberOf.o obj/PackAlign.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadPairing.o obj/ScoreAlignment.o obj/SeqInterval.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecString.o obj/charTranslations.o obj/lookup/FlowAlignSummary.o obj/lookup/LookAlign.o obj/lookup/LookAlignFinder.o obj/lookup/LookAlignSort.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/pairwise_aligners/Mutmer.o obj/random/Random.o obj/random/Shuffle.o obj/solexa/ExtractSolexaReads.o obj/solexa/FourBase.o obj/solexa/FourBase2.o obj/solexa/SolexaMetrics.o obj/solexa/SolexaPosition.o obj/solexa/SolexaTools.o obj/solexa/TrustedBases.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/StdioWrapper.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/BaitMap.o obj/util/Kronos.o /bin/rm obj/lib_CleanHyper_temp.a bin/checkLock bin/ExtractSolexaReads i686-pc-linux-gnu-g++ -ggdb3 -o bin/ExtractSolexaReads obj/solexa/ExtractSolexaReads.o -L. -L. -Lobj -l_ExtractSolexaReads_temp bin/checkLock bin/EvaluateStrongKmers i686-pc-linux-gnu-g++ -ggdb3 -o bin/EvaluateStrongKmers obj/kmer_freq/EvaluateStrongKmers.o -L. -L. -Lobj -l_EvaluateStrongKmers_temp /bin/rm -f obj/lib_Fasta2Fastb_temp.a ar -qc obj/lib_Fasta2Fastb_temp.a obj/Basevector.o obj/Bitvector.o obj/Charvector.o obj/CompressedSequence.o obj/FastIfstream.o obj/FastaConverter.o obj/FastaFileset.o obj/FastaFilestream.o obj/FastaFilestreamPreview.o obj/FastaNameParser.o obj/FastaVerifier.o obj/Feudal.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/MemberOf.o obj/ParseRange.o obj/ParseSet.o obj/Qualvector.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecString.o obj/charTranslations.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/random/Random.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Fasta2Fastb.o obj/util/Kronos.o ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function bin/checkLock bin/Fasta2Fastb i686-pc-linux-gnu-g++ -ggdb3 -o bin/Fasta2Fastb obj/util/Fasta2Fastb.o -L. -L. -Lobj -l_Fasta2Fastb_temp /bin/rm obj/lib_Fasta2Fastb_temp.a /bin/rm -f obj/lib_Fastb2Fasta_temp.a ar -qc obj/lib_Fastb2Fasta_temp.a obj/Basevector.o obj/FastIfstream.o obj/FetchReads.o obj/Feudal.o obj/FeudalReadPart.o obj/MemberOf.o obj/ParseRange.o obj/ParseSet.o obj/Qualvector.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecString.o obj/charTranslations.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/random/Random.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Fastb2Fasta.o obj/util/Kronos.o /bin/rm obj/lib_ExtractSolexaReads_temp.a /bin/rm -f obj/lib_FastbStats_temp.a ar -qc obj/lib_FastbStats_temp.a obj/Basevector.o obj/Feudal.o obj/FeudalReadPart.o obj/MemberOf.o obj/ParseRange.o obj/ParseSet.o obj/ReadLocation.o obj/ReadPairing.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecString.o obj/charTranslations.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/random/Random.o obj/reporting/FastbStats.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o bin/checkLock bin/Fastb2Fasta i686-pc-linux-gnu-g++ -ggdb3 -o bin/Fastb2Fasta obj/util/Fastb2Fasta.o -L. -L. -Lobj -l_Fastb2Fasta_temp /bin/rm obj/lib_EvalTrusted_temp.a bin/checkLock bin/FastbStats i686-pc-linux-gnu-g++ -ggdb3 -o bin/FastbStats obj/reporting/FastbStats.o -L. -L. -Lobj -l_FastbStats_temp /bin/rm -f obj/lib_FindGenomicKmers_temp.a ar -qc obj/lib_FindGenomicKmers_temp.a obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/FastIfstream.o obj/Feudal.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/ParseRange.o obj/ParseSet.o obj/Qualvector.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecString.o obj/charTranslations.o obj/kmer_freq/FindGenomicKmers.o obj/kmer_freq/WriteKmerFrequencies.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o /bin/rm obj/lib_Fastb2Fasta_temp.a /bin/rm -f obj/lib_FindKmerFrequencies_temp.a ar -qc obj/lib_FindKmerFrequencies_temp.a obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/FastIfstream.o obj/Feudal.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/ParseRange.o obj/ParseSet.o obj/Qualvector.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecString.o obj/charTranslations.o obj/kmer_freq/FindKmerFrequencies.o obj/kmer_freq/WriteKmerFrequencies.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o /bin/rm obj/lib_EvalHyper_temp.a bin/checkLock bin/FindGenomicKmers i686-pc-linux-gnu-g++ -ggdb3 -o bin/FindGenomicKmers obj/kmer_freq/FindGenomicKmers.o -L. -L. -Lobj -l_FindGenomicKmers_temp /bin/rm -f obj/lib_FindLinks_temp.a ar -qc obj/lib_FindLinks_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/BinaryIO.o obj/Bitvector.o obj/BlockAlign.o obj/Charvector.o obj/CompressedSequence.o obj/Equiv.o obj/FastIfstream.o obj/FastaConverter.o obj/FastaFilestream.o obj/FastaFilestreamPreview.o obj/FastaNameParser.o obj/FastaVerifier.o obj/FetchReads.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/PairsHandler.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadLocation.o obj/ReadPairing.o obj/ScoreAlignment.o obj/SeqInterval.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecOverlap.o obj/VecString.o obj/charTranslations.o obj/graph/Digraph.o obj/graph/DigraphPaths.o obj/graph/DotUtils.o obj/graphics/BasicGraphics.o obj/graphics/Color.o obj/lookup/FlowAlignSummary.o obj/lookup/Hit.o obj/lookup/LookAlign.o obj/lookup/LookupTable.o obj/lookup/LookupTableBuilder.o obj/lookup/PerfectCount.o obj/lookup/PerfectLookup.o obj/lookup/QueryLookupTableCore.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/pairwise_aligners/AlignFromMutmers.o obj/pairwise_aligners/AlignFromMutmersAndSW.o obj/pairwise_aligners/MakeAlignsMethod.o obj/pairwise_aligners/MatchList.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/pairwise_aligners/PerfectAligner.o obj/pairwise_aligners/SmithWatAffine.o obj/pairwise_aligners/SmithWatBandedA.o obj/pairwise_aligners/SmithWatFree.o obj/paths/AddSuperReads.o obj/paths/AlignAndMerge.o obj/paths/AlignHyperKmerPath.o obj/paths/AlignPairsToHyper.o obj/paths/AlignSeqsToHyper.o obj/paths/CompletedInsert.o obj/paths/EvalUtils.o obj/paths/ExtendUnipathSeqs.o obj/paths/FindClosures.o obj/paths/FindLinks.o obj/paths/GapSkip.o obj/paths/HyperKmerPath.o obj/paths/HyperKmerPathCleaner.o obj/paths/ImproperMerge.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathBreadthSearcher.o obj/paths/KmerPathDatabase.o obj/paths/KmerPathInterval.o obj/paths/KmerPathMuxSearcher.o obj/paths/MakeAlignsPathsParallelX.o obj/paths/Mux.o obj/paths/MuxGraph.o obj/paths/MuxSearchAgent.o obj/paths/MuxSearchPolicy.o obj/paths/MuxToPath.o obj/paths/MuxWalkGraph.o obj/paths/NegativeGapValidator.o obj/paths/OffsetTracker.o obj/paths/PairedPair.o obj/paths/PathEmbedding.o obj/paths/PathWalk.o obj/paths/PileReadsOnPath.o obj/paths/ReadFillDatabase.o obj/paths/ReadFillRecord.o obj/paths/ReadsToPathsCore.o obj/paths/ReadsToPathsCoreX.o obj/paths/SeqOnHyper.o obj/paths/SimpleWalk.o obj/paths/SubsumptionList.o obj/paths/Unipath.o obj/paths/UnipathSeq.o obj/paths/UnipathSeqBuilder.o obj/paths/VerifyGapLengths.o obj/paths/WalkPlot.o obj/random/Bernoulli.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/Threads.o obj/system/TimeUtils.o obj/system/TraceVal.o obj/system/Types.o obj/system/WorklistUtils.o obj/util/Kronos.o /bin/rm obj/lib_FastbStats_temp.a /bin/rm -f obj/lib_FindLinks0_temp.a ar -qc obj/lib_FindLinks0_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/BlockAlign.o obj/Equiv.o obj/FastIfstream.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/PairsHandler.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadPairing.o obj/ScoreAlignment.o obj/SeqInterval.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecOverlap.o obj/VecString.o obj/charTranslations.o obj/graph/Digraph.o obj/graphics/BasicGraphics.o obj/graphics/Color.o obj/lookup/LookAlign.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/pairwise_aligners/MatchList.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/pairwise_aligners/PerfectAligner.o obj/pairwise_aligners/SmithWatBandedA.o obj/paths/AddSuperReads.o obj/paths/AlignAndMerge.o obj/paths/CompletedInsert.o obj/paths/ExtendUnipathSeqs.o obj/paths/FindClosures.o obj/paths/FindLinks0.o obj/paths/GapSkip.o obj/paths/HyperKmerPath.o obj/paths/HyperKmerPathCleaner.o obj/paths/ImproperMerge.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathBreadthSearcher.o obj/paths/KmerPathDatabase.o obj/paths/KmerPathInterval.o obj/paths/KmerPathMuxSearcher.o obj/paths/Mux.o obj/paths/MuxGraph.o obj/paths/MuxSearchAgent.o obj/paths/MuxSearchPolicy.o obj/paths/MuxToPath.o obj/paths/MuxWalkGraph.o obj/paths/NegativeGapValidator.o obj/paths/OffsetTracker.o obj/paths/PairedPair.o obj/paths/PathEmbedding.o obj/paths/PathWalk.o obj/paths/PileReadsOnPath.o obj/paths/ReadFillDatabase.o obj/paths/ReadFillRecord.o obj/paths/SimpleWalk.o obj/paths/SubsumptionList.o obj/paths/Unipath.o obj/paths/UnipathSeq.o obj/paths/UnipathSeqBuilder.o obj/paths/VerifyGapLengths.o obj/paths/WalkPlot.o obj/random/Bernoulli.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o bin/checkLock bin/FindKmerFrequencies i686-pc-linux-gnu-g++ -ggdb3 -o bin/FindKmerFrequencies obj/kmer_freq/FindKmerFrequencies.o -L. -L. -Lobj -l_FindKmerFrequencies_temp In file included from ./kmer_freq/MarkTrustedB3.cc:74:0: ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function /bin/rm obj/lib_EvaluateStrongKmers_temp.a bin/checkLock bin/FindLinks0 i686-pc-linux-gnu-g++ -ggdb3 -o bin/FindLinks0 obj/paths/FindLinks0.o -L. -L. -Lobj -l_FindLinks0_temp ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function /bin/rm obj/lib_FindGenomicKmers_temp.a bin/checkLock bin/FindLinks /bin/rm obj/lib_FindKmerFrequencies_temp.a i686-pc-linux-gnu-g++ -ggdb3 -o bin/FindLinks obj/paths/FindLinks.o -L. -L. -Lobj -lpthread -l_FindLinks_temp /bin/rm -f obj/lib_FindUnipathLocs_temp.a /bin/rm -f obj/lib_GcBiasCurve2_temp.a ar -qc obj/lib_FindUnipathLocs_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/Equiv.o obj/FastIfstream.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/PairsHandler.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadPairing.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecOverlap.o obj/VecString.o obj/charTranslations.o obj/graph/Digraph.o obj/graphics/BasicGraphics.o obj/graphics/Color.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/pairwise_aligners/MatchList.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/pairwise_aligners/PerfectAligner.o obj/pairwise_aligners/SmithWatBandedA.o obj/paths/AddSuperReads.o obj/paths/AlignAndMerge.o obj/paths/CompletedInsert.o obj/paths/ExtendUnipathSeqs.o obj/paths/FindClosures.o obj/paths/FindUnipathLocs.o obj/paths/GapSkip.o obj/paths/HyperKmerPath.o obj/paths/HyperKmerPathCleaner.o obj/paths/ImproperMerge.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathBreadthSearcher.o obj/paths/KmerPathDatabase.o obj/paths/KmerPathInterval.o obj/paths/KmerPathMuxSearcher.o obj/paths/Mux.o obj/paths/MuxGraph.o obj/paths/MuxSearchAgent.o obj/paths/MuxSearchPolicy.o obj/paths/MuxToPath.o obj/paths/MuxWalkGraph.o obj/paths/NegativeGapValidator.o obj/paths/OffsetTracker.o obj/paths/PairedPair.o obj/paths/PathEmbedding.o obj/paths/PathWalk.o obj/paths/PileReadsOnPath.o obj/paths/ReadFillDatabase.o obj/paths/ReadFillRecord.o obj/paths/SimpleWalk.o obj/paths/SubsumptionList.o obj/paths/Unipath.o obj/paths/UnipathSeq.o obj/paths/UnipathSeqBuilder.o obj/paths/VerifyGapLengths.o obj/paths/WalkPlot.o obj/paths/simulation/Placement.o obj/random/Bernoulli.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o ar -qc obj/lib_GcBiasCurve2_temp.a obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/FastIfstream.o obj/Feudal.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/ParseRange.o obj/ParseSet.o obj/Qualvector.o obj/ReadPairing.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecString.o obj/charTranslations.o obj/kmer_freq/GcBiasCurve2.o obj/kmer_freq/KmerFrequencyTable.o obj/kmer_freq/KmerShortMap.o obj/kmer_freq/WriteKmerFrequencies.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o /bin/rm -f obj/lib_GenomeReadLocs_temp.a ar -qc obj/lib_GenomeReadLocs_temp.a obj/Alignment.o obj/Basevector.o obj/BlockAlign.o obj/FastIfstream.o obj/Feudal.o obj/FeudalReadPart.o obj/IndexedAlignmentPlusVector.o obj/MemberOf.o obj/PackAlign.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadLocation.o obj/ReadPairing.o obj/ScoreAlignment.o obj/SeqInterval.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecString.o obj/charTranslations.o obj/lookup/Hit.o obj/lookup/LookAlign.o obj/lookup/LookupTable.o obj/lookup/PerfectCount.o obj/lookup/PerfectLookup.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/pairwise_aligners/Mutmer.o obj/paths/GenomeReadLocs.o obj/random/Random.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o bin/checkLock bin/GenomeReadLocs i686-pc-linux-gnu-g++ -ggdb3 -o bin/GenomeReadLocs obj/paths/GenomeReadLocs.o -L. -L. -Lobj -l_GenomeReadLocs_temp ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function bin/checkLock bin/GcBiasCurve2 i686-pc-linux-gnu-g++ -ggdb3 -o bin/GcBiasCurve2 obj/kmer_freq/GcBiasCurve2.o -L. -L. -Lobj -l_GcBiasCurve2_temp ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function /bin/rm obj/lib_GenomeReadLocs_temp.a /bin/rm -f obj/lib_GenomeSizeFromUnibases_temp.a /bin/rm obj/lib_FindLinks0_temp.a /bin/rm obj/lib_FindLinks_temp.a bin/checkLock bin/FindUnipathLocs ar -qc obj/lib_GenomeSizeFromUnibases_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/Equiv.o obj/FastIfstream.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/PairsHandler.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadPairing.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecOverlap.o obj/VecString.o obj/charTranslations.o obj/graph/Digraph.o obj/graphics/BasicGraphics.o obj/graphics/Color.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/pairwise_aligners/MatchList.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/pairwise_aligners/PerfectAligner.o obj/pairwise_aligners/SmithWatBandedA.o obj/paths/AddSuperReads.o obj/paths/AlignAndMerge.o obj/paths/CompletedInsert.o obj/paths/ExtendUnipathSeqs.o obj/paths/FindClosures.o obj/paths/GapSkip.o obj/paths/GenomeSizeFromUnibases.o obj/paths/HyperKmerPath.o obj/paths/HyperKmerPathCleaner.o obj/paths/ImproperMerge.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathBreadthSearcher.o obj/paths/KmerPathDatabase.o obj/paths/KmerPathInterval.o obj/paths/KmerPathMuxSearcher.o obj/paths/Mux.o obj/paths/MuxGraph.o obj/paths/MuxSearchAgent.o obj/paths/MuxSearchPolicy.o obj/paths/MuxToPath.o obj/paths/MuxWalkGraph.o obj/paths/NegativeGapValidator.o obj/paths/OffsetTracker.o obj/paths/PairedPair.o obj/paths/PathEmbedding.o obj/paths/PathWalk.o obj/paths/PileReadsOnPath.o obj/paths/ReadFillDatabase.o obj/paths/ReadFillRecord.o obj/paths/SimpleWalk.o obj/paths/SubsumptionList.o obj/paths/Unipath.o obj/paths/UnipathSeq.o obj/paths/UnipathSeqBuilder.o obj/paths/VerifyGapLengths.o obj/paths/WalkPlot.o obj/random/Bernoulli.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o i686-pc-linux-gnu-g++ -ggdb3 -o bin/FindUnipathLocs obj/paths/FindUnipathLocs.o -L. -L. -Lobj -l_FindUnipathLocs_temp /bin/rm -f obj/lib_ReadsToPaths_temp.a /bin/rm -f obj/lib_GetTruerReads_temp.a ar -qc obj/lib_ReadsToPaths_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/FastIfstream.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecString.o obj/charTranslations.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/paths/KmerPath.o obj/paths/KmerPathInterval.o obj/paths/ReadsToPaths.o obj/paths/ReadsToPathsCore.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o ar -qc obj/lib_GetTruerReads_temp.a obj/Alignment.o obj/Basevector.o obj/Bitvector.o obj/BlockAlign.o obj/FastIfstream.o obj/Feudal.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/IndexedAlignmentPlusVector.o obj/MemberOf.o obj/PackAlign.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadLocation.o obj/ReadPairing.o obj/ScoreAlignment.o obj/SeqInterval.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecString.o obj/charTranslations.o obj/lookup/GetTruerReads.o obj/lookup/Hit.o obj/lookup/LookAlign.o obj/lookup/LookupTable.o obj/lookup/PerfectCount.o obj/lookup/PerfectLookup.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/pairwise_aligners/Mutmer.o obj/random/Random.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o /bin/rm -f obj/lib_ImperfectLookupTable_temp.a ar -qc obj/lib_ImperfectLookupTable_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/BlockAlign.o obj/Charvector.o obj/CompressedSequence.o obj/FastIfstream.o obj/FastaConverter.o obj/FastaFileset.o obj/FastaFilestream.o obj/FastaFilestreamPreview.o obj/FastaNameParser.o obj/FastaVerifier.o obj/Feudal.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/IndexedAlignmentPlusVector.o obj/MemberOf.o obj/PackAlign.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadPairing.o obj/ScoreAlignment.o obj/SeqInterval.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecString.o obj/charTranslations.o obj/lookup/AlignCollector.o obj/lookup/Hit.o obj/lookup/HitReceiver.o obj/lookup/ImperfectLookup.o obj/lookup/ImperfectLookupTable.o obj/lookup/LookAlign.o obj/lookup/LookupTable.o obj/lookup/PerfectCount.o obj/lookup/PerfectLookup.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/pairwise_aligners/Mutmer.o obj/pairwise_aligners/SmithWatBandedA.o obj/random/Random.o obj/solid/Solid.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o bin/checkLock bin/GetTruerReads i686-pc-linux-gnu-g++ -ggdb3 -o bin/GetTruerReads obj/lookup/GetTruerReads.o -L. -L. -Lobj -l_GetTruerReads_temp bin/checkLock bin/ImperfectLookupTable i686-pc-linux-gnu-g++ -ggdb3 -o bin/ImperfectLookupTable obj/lookup/ImperfectLookupTable.o -L. -L. -Lobj -l_ImperfectLookupTable_temp ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function bin/checkLock bin/GenomeSizeFromUnibases i686-pc-linux-gnu-g++ -ggdb3 -o bin/GenomeSizeFromUnibases obj/paths/GenomeSizeFromUnibases.o -L. -L. -Lobj -l_GenomeSizeFromUnibases_temp bin/checkLock bin/ReadsToPaths i686-pc-linux-gnu-g++ -ggdb3 -o bin/ReadsToPaths obj/paths/ReadsToPaths.o -L. -L. -Lobj -l_ReadsToPaths_temp /bin/rm obj/lib_GetTruerReads_temp.a /bin/rm -f obj/lib_KAdjsFromUnibases_temp.a ar -qc obj/lib_KAdjsFromUnibases_temp.a obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/Equiv.o obj/FastIfstream.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/ParseRange.o obj/ParseSet.o obj/Qualvector.o obj/ReadPairing.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecString.o obj/charTranslations.o obj/graph/Digraph.o obj/kmer_freq/KAdjGraph.o obj/kmer_freq/KAdjsFromUnibases.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/paths/KmerPath.o obj/paths/KmerPathInterval.o obj/paths/UnibaseUtils.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o /bin/rm obj/lib_ImperfectLookupTable_temp.a /bin/rm -f obj/lib_LibraryStatsFromUnibases_temp.a bin/checkLock bin/KAdjsFromUnibases ar -qc obj/lib_LibraryStatsFromUnibases_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/BlockAlign.o obj/FastIfstream.o obj/Feudal.o obj/FeudalReadPart.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/ParseRange.o obj/ParseSet.o obj/PrettyPrintTable.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadPairing.o obj/ScoreAlignment.o obj/SeqInterval.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecString.o obj/charTranslations.o obj/lookup/LookAlign.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/pairwise_aligners/Mutmer.o obj/paths/LibraryStatsFromUnibases.o obj/paths/UnibaseUtils.o obj/random/Random.o obj/solexa/SolexaMetrics.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o i686-pc-linux-gnu-g++ -ggdb3 -o bin/KAdjsFromUnibases obj/kmer_freq/KAdjsFromUnibases.o -L. -L. -Lobj -l_KAdjsFromUnibases_temp ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function /bin/rm obj/lib_FindUnipathLocs_temp.a /bin/rm -f obj/lib_LocalizeReads_temp.a ar -qc obj/lib_LocalizeReads_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/BinaryIO.o obj/Bitvector.o obj/BlockAlign.o obj/Charvector.o obj/CompressedSequence.o obj/Equiv.o obj/FastIfstream.o obj/FastaConverter.o obj/FastaFilestream.o obj/FastaFilestreamPreview.o obj/FastaNameParser.o obj/FastaVerifier.o obj/FetchReads.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/PairsHandler.o obj/ParseRange.o obj/ParseSet.o obj/PrettyPrintTable.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadLocation.o obj/ReadPairing.o obj/ScoreAlignment.o obj/SeqInterval.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecOverlap.o obj/VecString.o obj/charTranslations.o obj/graph/Digraph.o obj/graph/DigraphPaths.o obj/graph/DotUtils.o obj/graphics/BasicGraphics.o obj/graphics/Color.o obj/kmer_freq/KmerFrequencyTable.o obj/kmer_freq/KmerShortMap.o obj/kmer_freq/WriteKmerFrequencies.o obj/lookup/FlowAlignSummary.o obj/lookup/Hit.o obj/lookup/LookAlign.o obj/lookup/LookupTable.o obj/lookup/LookupTableBuilder.o obj/lookup/PerfectCount.o obj/lookup/PerfectLookup.o obj/lookup/QueryLookupTableCore.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/pairwise_aligners/AlignFromMutmers.o obj/pairwise_aligners/AlignFromMutmersAndSW.o obj/pairwise_aligners/MakeAlignsMethod.o obj/pairwise_aligners/MatchList.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/pairwise_aligners/PerfectAligner.o obj/pairwise_aligners/SmithWatAffine.o obj/pairwise_aligners/SmithWatBandedA.o obj/pairwise_aligners/SmithWatFree.o obj/paths/AddSuperReads.o obj/paths/AlignAndMerge.o obj/paths/AlignHyperKmerPath.o obj/paths/AlignPairsToHyper.o obj/paths/AlignSeqsToHyper.o obj/paths/BigPicture.o obj/paths/BridgeGaps.o obj/paths/CompletedInsert.o obj/paths/EvalUtils.o obj/paths/ExtendUnipathSeqs.o obj/paths/FindClosures.o obj/paths/FindSubsumedReads.o obj/paths/GapSkip.o obj/paths/GlobalClean.o obj/paths/GlobalCleanAnnex.o obj/paths/Hospital.o obj/paths/HyperKmerPath.o obj/paths/HyperKmerPathCleaner.o obj/paths/ImproperMerge.o obj/paths/InternalMerge.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathBreadthSearcher.o obj/paths/KmerPathDatabase.o obj/paths/KmerPathInterval.o obj/paths/KmerPathMuxSearcher.o obj/paths/KmerPathOnHyper.o obj/paths/LocalizeReads.o obj/paths/LocalizeReadsAnnex.o obj/paths/LocalizeReadsAnnex2.o obj/paths/LocalizeReadsTail.o obj/paths/MakeAlignsPathsParallelX.o obj/paths/MergeAndTighten.o obj/paths/MergeCopyNumberTwo.o obj/paths/MergeTwoGreedy.o obj/paths/Mux.o obj/paths/MuxFinder.o obj/paths/MuxGraph.o obj/paths/MuxSearchAgent.o obj/paths/MuxSearchPolicy.o obj/paths/MuxSetup.o obj/paths/MuxToPath.o obj/paths/MuxWalkGraph.o obj/paths/NegativeGapValidator.o obj/paths/OffsetTracker.o obj/paths/PairGraph.o obj/paths/PairedPair.o obj/paths/PairedWalk.o obj/paths/PathEmbedding.o obj/paths/PathWalk.o obj/paths/PdfEntry.o obj/paths/PileReadsOnPath.o obj/paths/PoorlyCoveredPairs.o obj/paths/PullApartHyperKmerPath.o obj/paths/ReadFillDatabase.o obj/paths/ReadFillRecord.o obj/paths/ReadsToPathsCore.o obj/paths/ReadsToPathsCoreX.o obj/paths/SeqOnHyper.o obj/paths/SharedCounter.o obj/paths/SimpleLoop.o obj/paths/SimpleWalk.o obj/paths/SubMuxGraphBuilder.o obj/paths/SubsumptionList.o obj/paths/Unipath.o obj/paths/UnipathNhood.o obj/paths/UnipathNhoodCommon.o obj/paths/UnipathSeeds.o obj/paths/UnipathSeq.o obj/paths/UnipathSeqBuilder.o obj/paths/UniqueExtend.o obj/paths/Unjumble.o obj/paths/VerifyGapLengths.o obj/paths/WalkPlot.o obj/paths/simulation/Placement.o obj/paths/simulation/SimTrueSequenceBroker.o obj/random/Bernoulli.o obj/random/NormalDistribution.o obj/random/NormalRandom.o obj/random/PoissonTail.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/Threads.o obj/system/TimeUtils.o obj/system/TraceVal.o obj/system/Types.o obj/system/WorklistUtils.o obj/util/Kronos.o bin/checkLock bin/LibraryStatsFromUnibases i686-pc-linux-gnu-g++ -ggdb3 -o bin/LibraryStatsFromUnibases obj/paths/LibraryStatsFromUnibases.o -L. -L. -Lobj -l_LibraryStatsFromUnibases_temp /bin/rm obj/lib_GenomeSizeFromUnibases_temp.a /bin/rm obj/lib_GcBiasCurve2_temp.a /bin/rm -f obj/lib_LookAlignsToGaplessAligns_temp.a ar -qc obj/lib_LookAlignsToGaplessAligns_temp.a obj/Alignment.o obj/Basevector.o obj/BlockAlign.o obj/FastIfstream.o obj/Feudal.o obj/FeudalReadPart.o obj/IndexedAlignmentPlusVector.o obj/MemberOf.o obj/PackAlign.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadPairing.o obj/ScoreAlignment.o obj/SeqInterval.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecString.o obj/charTranslations.o obj/lookup/Hit.o obj/lookup/LookAlign.o obj/lookup/LookAlignsToGaplessAligns.o obj/lookup/LookupTable.o obj/lookup/PerfectCount.o obj/lookup/PerfectLookup.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/pairwise_aligners/Mutmer.o obj/random/Random.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o /bin/rm -f obj/lib_MakeLookupTable_temp.a ar -qc obj/lib_MakeLookupTable_temp.a obj/Alignment.o obj/Basevector.o obj/Bitvector.o obj/BlockAlign.o obj/Charvector.o obj/CompressedSequence.o obj/FastIfstream.o obj/FastaConverter.o obj/FastaFileset.o obj/FastaFilestream.o obj/FastaFilestreamPreview.o obj/FastaNameParser.o obj/FastaVerifier.o obj/FetchReads.o obj/FetchReadsAmb.o obj/Feudal.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/IndexedAlignmentPlusVector.o obj/MemberOf.o obj/PackAlign.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadPairing.o obj/ScoreAlignment.o obj/SeqInterval.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecString.o obj/charTranslations.o obj/lookup/Hit.o obj/lookup/LookAlign.o obj/lookup/LookupTable.o obj/lookup/LookupTableBuilder.o obj/lookup/MakeLookupTable.o obj/lookup/PerfectCount.o obj/lookup/PerfectLookup.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/pairwise_aligners/Mutmer.o obj/random/Random.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o bin/checkLock bin/LookAlignsToGaplessAligns i686-pc-linux-gnu-g++ -ggdb3 -o bin/LookAlignsToGaplessAligns obj/lookup/LookAlignsToGaplessAligns.o -L. -L. -Lobj -l_LookAlignsToGaplessAligns_temp bin/checkLock bin/MakeLookupTable i686-pc-linux-gnu-g++ -ggdb3 -o bin/MakeLookupTable obj/lookup/MakeLookupTable.o -L. -L. -Lobj -l_MakeLookupTable_temp /bin/rm obj/lib_ReadsToPaths_temp.a /bin/rm -f obj/lib_MakeNormalEdgeGraph_temp.a ar -qc obj/lib_MakeNormalEdgeGraph_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/Equiv.o obj/FastIfstream.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/PairsHandler.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadPairing.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecOverlap.o obj/VecString.o obj/charTranslations.o obj/graph/Digraph.o obj/graphics/BasicGraphics.o obj/graphics/Color.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/pairwise_aligners/MatchList.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/pairwise_aligners/PerfectAligner.o obj/pairwise_aligners/SmithWatBandedA.o obj/paths/AddSuperReads.o obj/paths/AlignAndMerge.o obj/paths/CompletedInsert.o obj/paths/ExtendUnipathSeqs.o obj/paths/FindClosures.o obj/paths/GapSkip.o obj/paths/HyperKmerPath.o obj/paths/HyperKmerPathCleaner.o obj/paths/ImproperMerge.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathBreadthSearcher.o obj/paths/KmerPathDatabase.o obj/paths/KmerPathInterval.o obj/paths/KmerPathMuxSearcher.o obj/paths/MakeNormalEdgeGraph.o obj/paths/Mux.o obj/paths/MuxGraph.o obj/paths/MuxSearchAgent.o obj/paths/MuxSearchPolicy.o obj/paths/MuxToPath.o obj/paths/MuxWalkGraph.o obj/paths/NegativeGapValidator.o obj/paths/NormalEdgeGraph.o obj/paths/OffsetTracker.o obj/paths/PairedPair.o obj/paths/PathEmbedding.o obj/paths/PathWalk.o obj/paths/PileReadsOnPath.o obj/paths/ReadFillDatabase.o obj/paths/ReadFillRecord.o obj/paths/SimpleWalk.o obj/paths/SubsumptionList.o obj/paths/Unipath.o obj/paths/UnipathSeq.o obj/paths/UnipathSeqBuilder.o obj/paths/VerifyGapLengths.o obj/paths/WalkPlot.o obj/random/Bernoulli.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function /bin/rm obj/lib_LibraryStatsFromUnibases_temp.a /bin/rm obj/lib_KAdjsFromUnibases_temp.a /bin/rm obj/lib_LookAlignsToGaplessAligns_temp.a /bin/rm obj/lib_MakeLookupTable_temp.a /bin/rm -f obj/lib_MakeRcDb_temp.a /bin/rm -f obj/lib_MarkGenomicKmersInReads_temp.a ar -qc obj/lib_MakeRcDb_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/Equiv.o obj/FastIfstream.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/PairsHandler.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadPairing.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecOverlap.o obj/VecString.o obj/charTranslations.o obj/graph/Digraph.o obj/graphics/BasicGraphics.o obj/graphics/Color.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/pairwise_aligners/MatchList.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/pairwise_aligners/PerfectAligner.o obj/pairwise_aligners/SmithWatBandedA.o obj/paths/AddSuperReads.o obj/paths/AlignAndMerge.o obj/paths/CompletedInsert.o obj/paths/ExtendUnipathSeqs.o obj/paths/FindClosures.o obj/paths/GapSkip.o obj/paths/HyperKmerPath.o obj/paths/HyperKmerPathCleaner.o obj/paths/ImproperMerge.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathBreadthSearcher.o obj/paths/KmerPathDatabase.o obj/paths/KmerPathInterval.o obj/paths/KmerPathMuxSearcher.o obj/paths/MakeRcDb.o obj/paths/Mux.o obj/paths/MuxGraph.o obj/paths/MuxSearchAgent.o obj/paths/MuxSearchPolicy.o obj/paths/MuxToPath.o obj/paths/MuxWalkGraph.o obj/paths/NegativeGapValidator.o obj/paths/OffsetTracker.o obj/paths/PairedPair.o obj/paths/PathEmbedding.o obj/paths/PathWalk.o obj/paths/PileReadsOnPath.o obj/paths/ReadFillDatabase.o obj/paths/ReadFillRecord.o obj/paths/SimpleWalk.o obj/paths/SubsumptionList.o obj/paths/Unipath.o obj/paths/UnipathSeq.o obj/paths/UnipathSeqBuilder.o obj/paths/VerifyGapLengths.o obj/paths/WalkPlot.o obj/random/Bernoulli.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o ar -qc obj/lib_MarkGenomicKmersInReads_temp.a obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/Charvector.o obj/FastIfstream.o obj/FetchReads.o obj/Feudal.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/ParseRange.o obj/ParseSet.o obj/Qualvector.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecString.o obj/charTranslations.o obj/kmer_freq/KOccViewer.o obj/kmer_freq/MarkGenomicKmersInReads.o obj/kmer_freq/MarkTrustedUtils.o obj/kmer_freq/WriteKmerFrequencies.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/random/Random.o obj/solexa/ExtractSolexaReadsLib.o obj/solexa/FourBase.o obj/solexa/FourBase2.o obj/solexa/SolexaMetrics.o obj/solexa/SolexaPosition.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/HTMLUtils.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/system/Utils.o obj/util/Kronos.o /bin/rm -f obj/lib_MarkTrusted1_temp.a /bin/rm -f obj/lib_MarkTrusted2_temp.a bin/checkLock bin/LocalizeReads i686-pc-linux-gnu-g++ -ggdb3 -o bin/LocalizeReads obj/paths/LocalizeReads.o -L. -L. -Lobj -lpthread -l_LocalizeReads_temp ar -qc obj/lib_MarkTrusted1_temp.a obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/FastIfstream.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/ParseRange.o obj/ParseSet.o obj/Qualvector.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecString.o obj/charTranslations.o obj/kmer_freq/WriteKmerFrequencies.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathInterval.o obj/paths/MarkTrusted1.o obj/paths/PathEmbedding.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o bin/checkLock bin/MakeNormalEdgeGraph ar -qc obj/lib_MarkTrusted2_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/FastIfstream.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecString.o obj/charTranslations.o obj/kmer_freq/WriteKmerFrequencies.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathInterval.o obj/paths/MakeAlignsPathsParallelX.o obj/paths/MarkTrusted2.o obj/paths/PathEmbedding.o obj/paths/ReadsToPathsCoreX.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/Threads.o obj/system/TraceVal.o obj/system/Types.o obj/system/WorklistUtils.o obj/util/Kronos.o i686-pc-linux-gnu-g++ -ggdb3 -o bin/MakeNormalEdgeGraph obj/paths/MakeNormalEdgeGraph.o -L. -L. -Lobj -l_MakeNormalEdgeGraph_temp /bin/rm obj/lib_MakeNormalEdgeGraph_temp.a ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function /bin/rm -f obj/lib_MarkTrusted4_temp.a ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function bin/checkLock bin/MarkTrusted2 i686-pc-linux-gnu-g++ -ggdb3 -o bin/MarkTrusted2 obj/paths/MarkTrusted2.o -L. -L. -Lobj -lpthread -l_MarkTrusted2_temp bin/checkLock bin/MarkTrusted1 i686-pc-linux-gnu-g++ -ggdb3 -o bin/MarkTrusted1 obj/paths/MarkTrusted1.o -L. -L. -Lobj -l_MarkTrusted1_temp ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function bin/checkLock bin/MarkGenomicKmersInReads i686-pc-linux-gnu-g++ -ggdb3 -o bin/MarkGenomicKmersInReads obj/kmer_freq/MarkGenomicKmersInReads.o -L. -L. -Lobj -l_MarkGenomicKmersInReads_temp /bin/rm -f obj/lib_MarkTrusted5_temp.a ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function /bin/rm obj/lib_LocalizeReads_temp.a bin/checkLock bin/MakeRcDb ar -qc obj/lib_MarkTrusted4_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/FastIfstream.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecString.o obj/charTranslations.o obj/kmer_freq/WriteKmerFrequencies.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathInterval.o obj/paths/MakeAlignsPathsParallelX.o obj/paths/MarkTrusted4.o obj/paths/PathEmbedding.o obj/paths/ReadsToPathsCoreX.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/Threads.o obj/system/TraceVal.o obj/system/Types.o obj/system/WorklistUtils.o obj/util/Kronos.o ar -qc obj/lib_MarkTrusted5_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/FastIfstream.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecString.o obj/charTranslations.o obj/kmer_freq/WriteKmerFrequencies.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathInterval.o obj/paths/MakeAlignsPathsParallelX.o obj/paths/MarkTrusted5.o obj/paths/PathEmbedding.o obj/paths/ReadsToPathsCoreX.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/Threads.o obj/system/TraceVal.o obj/system/Types.o obj/system/WorklistUtils.o obj/util/Kronos.o i686-pc-linux-gnu-g++ -ggdb3 -o bin/MakeRcDb obj/paths/MakeRcDb.o -L. -L. -Lobj -l_MakeRcDb_temp /bin/rm -f obj/lib_MarkTrusted6_temp.a ar -qc obj/lib_MarkTrusted6_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/Equiv.o obj/FastIfstream.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/PairsHandler.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadPairing.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecOverlap.o obj/VecString.o obj/charTranslations.o obj/graph/Digraph.o obj/graphics/BasicGraphics.o obj/graphics/Color.o obj/kmer_freq/WriteKmerFrequencies.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/pairwise_aligners/MatchList.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/pairwise_aligners/PerfectAligner.o obj/pairwise_aligners/SmithWatBandedA.o obj/paths/AddSuperReads.o obj/paths/AlignAndMerge.o obj/paths/CompletedInsert.o obj/paths/ExtendUnipathSeqs.o obj/paths/FindClosures.o obj/paths/GapSkip.o obj/paths/HyperKmerPath.o obj/paths/HyperKmerPathCleaner.o obj/paths/ImproperMerge.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathBreadthSearcher.o obj/paths/KmerPathDatabase.o obj/paths/KmerPathInterval.o obj/paths/KmerPathMuxSearcher.o obj/paths/MakeAlignsPathsParallelX.o obj/paths/MarkTrusted6.o obj/paths/Mux.o obj/paths/MuxGraph.o obj/paths/MuxSearchAgent.o obj/paths/MuxSearchPolicy.o obj/paths/MuxToPath.o obj/paths/MuxWalkGraph.o obj/paths/NegativeGapValidator.o obj/paths/OffsetTracker.o obj/paths/PairedPair.o obj/paths/PathEmbedding.o obj/paths/PathWalk.o obj/paths/PileReadsOnPath.o obj/paths/ReadFillDatabase.o obj/paths/ReadFillRecord.o obj/paths/ReadsToPathsCoreX.o obj/paths/SimpleWalk.o obj/paths/SubsumptionList.o obj/paths/Unipath.o obj/paths/UnipathSeq.o obj/paths/UnipathSeqBuilder.o obj/paths/VerifyGapLengths.o obj/paths/WalkPlot.o obj/random/Bernoulli.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/Threads.o obj/system/TraceVal.o obj/system/Types.o obj/system/WorklistUtils.o obj/util/Kronos.o /bin/rm -f obj/lib_MarkTrustedA1_temp.a ar -qc obj/lib_MarkTrustedA1_temp.a obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/Charvector.o obj/FastIfstream.o obj/FetchReads.o obj/Feudal.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/ParseRange.o obj/ParseSet.o obj/Qualvector.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecString.o obj/charTranslations.o obj/kmer_freq/KOccViewer.o obj/kmer_freq/MarkTrustedA1.o obj/kmer_freq/MarkTrustedUtils.o obj/kmer_freq/WriteKmerFrequencies.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/random/Random.o obj/solexa/ExtractSolexaReadsLib.o obj/solexa/FourBase.o obj/solexa/FourBase2.o obj/solexa/SolexaMetrics.o obj/solexa/SolexaPosition.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/HTMLUtils.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/system/Utils.o obj/util/Kronos.o bin/checkLock bin/MarkTrusted5 i686-pc-linux-gnu-g++ -ggdb3 -o bin/MarkTrusted5 obj/paths/MarkTrusted5.o -L. -L. -Lobj -lpthread -l_MarkTrusted5_temp ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function /bin/rm obj/lib_MakeRcDb_temp.a /bin/rm obj/lib_MarkGenomicKmersInReads_temp.a /bin/rm -f obj/lib_MarkTrustedA3_temp.a /bin/rm obj/lib_MarkTrusted1_temp.a bin/checkLock bin/MarkTrusted4 i686-pc-linux-gnu-g++ -ggdb3 -o bin/MarkTrusted4 obj/paths/MarkTrusted4.o -L. -L. -Lobj -lpthread -l_MarkTrusted4_temp ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function /bin/rm obj/lib_MarkTrusted2_temp.a bin/checkLock bin/MarkTrustedA1 i686-pc-linux-gnu-g++ -ggdb3 -o bin/MarkTrustedA1 obj/kmer_freq/MarkTrustedA1.o -L. -L. -Lobj -l_MarkTrustedA1_temp ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function bin/checkLock bin/MarkTrusted6 i686-pc-linux-gnu-g++ -ggdb3 -o bin/MarkTrusted6 obj/paths/MarkTrusted6.o -L. -L. -Lobj -lpthread -l_MarkTrusted6_temp ar -qc obj/lib_MarkTrustedA3_temp.a obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/Charvector.o obj/FastIfstream.o obj/FetchReads.o obj/Feudal.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/ParseRange.o obj/ParseSet.o obj/Qualvector.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecString.o obj/charTranslations.o obj/kmer_freq/KOccViewer.o obj/kmer_freq/MarkTrustedA3.o obj/kmer_freq/MarkTrustedUtils.o obj/kmer_freq/WriteKmerFrequencies.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/random/Random.o obj/solexa/ExtractSolexaReadsLib.o obj/solexa/FourBase.o obj/solexa/FourBase2.o obj/solexa/SolexaMetrics.o obj/solexa/SolexaPosition.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/HTMLUtils.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/system/Utils.o obj/util/Kronos.o /bin/rm -f obj/lib_MarkTrustedB1_temp.a /bin/rm -f obj/lib_PanForGold_temp.a ar -qc obj/lib_MarkTrustedB1_temp.a obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/FastIfstream.o obj/Feudal.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/ParseRange.o obj/ParseSet.o obj/Qualvector.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecString.o obj/charTranslations.o obj/kmer_freq/MarkTrustedB1.o obj/kmer_freq/WriteKmerFrequencies.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o ar -qc obj/lib_PanForGold_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/BlockAlign.o obj/Equiv.o obj/FastIfstream.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/PairsHandler.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadPairing.o obj/ScoreAlignment.o obj/SeqInterval.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecOverlap.o obj/VecString.o obj/charTranslations.o obj/graph/Digraph.o obj/graphics/BasicGraphics.o obj/graphics/Color.o obj/kmer_freq/KAdjGraph.o obj/lookup/Hit.o obj/lookup/LookAlign.o obj/lookup/LookupTable.o obj/lookup/PerfectCount.o obj/lookup/PerfectLookup.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/pairwise_aligners/MatchList.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/pairwise_aligners/PerfectAligner.o obj/pairwise_aligners/SmithWatBandedA.o obj/paths/AddSuperReads.o obj/paths/AlignAndMerge.o obj/paths/CompletedInsert.o obj/paths/ExtendUnipathSeqs.o obj/paths/FindClosures.o obj/paths/GapSkip.o obj/paths/HyperKmerPath.o obj/paths/HyperKmerPathCleaner.o obj/paths/ImproperMerge.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathBreadthSearcher.o obj/paths/KmerPathDatabase.o obj/paths/KmerPathInterval.o obj/paths/KmerPathMuxSearcher.o obj/paths/MakeAlignsPathsParallelX.o obj/paths/Mux.o obj/paths/MuxGraph.o obj/paths/MuxSearchAgent.o obj/paths/MuxSearchPolicy.o obj/paths/MuxToPath.o obj/paths/MuxWalkGraph.o obj/paths/NegativeGapValidator.o obj/paths/OffsetTracker.o obj/paths/PairedPair.o obj/paths/PanForGold.o obj/paths/PathEmbedding.o obj/paths/PathWalk.o obj/paths/PileReadsOnPath.o obj/paths/ReadFillDatabase.o obj/paths/ReadFillRecord.o obj/paths/ReadsToPathsCoreX.o obj/paths/SimpleWalk.o obj/paths/SubsumptionList.o obj/paths/UnibaseUtils.o obj/paths/Unipath.o obj/paths/UnipathSeq.o obj/paths/UnipathSeqBuilder.o obj/paths/VerifyGapLengths.o obj/paths/WalkPlot.o obj/random/Bernoulli.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/Threads.o obj/system/TraceVal.o obj/system/Types.o obj/system/WorklistUtils.o obj/util/Kronos.o /bin/rm -f obj/lib_PathsToLocs_temp.a /bin/rm -f obj/lib_PrepareAllPathsInput_temp.a ar -qc obj/lib_PathsToLocs_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/Equiv.o obj/FastIfstream.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/PairsHandler.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadPairing.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecOverlap.o obj/VecString.o obj/charTranslations.o obj/graph/Digraph.o obj/graphics/BasicGraphics.o obj/graphics/Color.o obj/graphics/Eps.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/pairwise_aligners/MatchList.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/pairwise_aligners/PerfectAligner.o obj/pairwise_aligners/SmithWatBandedA.o obj/paths/AddSuperReads.o obj/paths/AlignAndMerge.o obj/paths/CompletedInsert.o obj/paths/ExtendUnipathSeqs.o obj/paths/FindClosures.o obj/paths/GapSkip.o obj/paths/HyperKmerPath.o obj/paths/HyperKmerPathCleaner.o obj/paths/ImproperMerge.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathBreadthSearcher.o obj/paths/KmerPathDatabase.o obj/paths/KmerPathInterval.o obj/paths/KmerPathMuxSearcher.o obj/paths/MakeAlignsPathsParallelX.o obj/paths/Mux.o obj/paths/MuxGraph.o obj/paths/MuxSearchAgent.o obj/paths/MuxSearchPolicy.o obj/paths/MuxToPath.o obj/paths/MuxWalkGraph.o obj/paths/NegativeGapValidator.o obj/paths/OffsetTracker.o obj/paths/PairedPair.o obj/paths/PathEmbedding.o obj/paths/PathWalk.o obj/paths/PileReadsOnPath.o obj/paths/ReadFillDatabase.o obj/paths/ReadFillRecord.o obj/paths/ReadsToPathsCoreX.o obj/paths/SimpleWalk.o obj/paths/SubsumptionList.o obj/paths/Unipath.o obj/paths/UnipathSeq.o obj/paths/UnipathSeqBuilder.o obj/paths/VerifyGapLengths.o obj/paths/WalkPlot.o obj/paths/simulation/GenomePlacement.o obj/paths/simulation/PathsToLocs.o obj/random/Bernoulli.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/Threads.o obj/system/TraceVal.o obj/system/Types.o obj/system/WorklistUtils.o obj/util/Kronos.o ar -qc obj/lib_PrepareAllPathsInput_temp.a obj/Alignment.o obj/Basevector.o obj/Bitvector.o obj/BlockAlign.o obj/Charvector.o obj/CompressedSequence.o obj/FastIfstream.o obj/FastaConverter.o obj/FastaFileset.o obj/FastaFilestream.o obj/FastaFilestreamPreview.o obj/FastaNameParser.o obj/FastaVerifier.o obj/FetchReads.o obj/Feudal.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/IndexedAlignmentPlusVector.o obj/MemberOf.o obj/PackAlign.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadPairing.o obj/ScoreAlignment.o obj/SeqInterval.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecString.o obj/charTranslations.o obj/lookup/FlowAlignSummary.o obj/lookup/LookAlign.o obj/lookup/LookAlignFinder.o obj/lookup/LookAlignSort.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/pairwise_aligners/Mutmer.o obj/paths/PrepareAllPathsInput.o obj/random/Random.o obj/random/Shuffle.o obj/solexa/FourBase.o obj/solexa/FourBase2.o obj/solexa/SolexaMetrics.o obj/solexa/SolexaPosition.o obj/solexa/SolexaTools.o obj/solexa/TrustedBases.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/StdioWrapper.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/BaitMap.o obj/util/Kronos.o bin/checkLock bin/PrepareAllPathsInput i686-pc-linux-gnu-g++ -ggdb3 -o bin/PrepareAllPathsInput obj/paths/PrepareAllPathsInput.o -L. -L. -Lobj -l_PrepareAllPathsInput_temp ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function bin/checkLock bin/MarkTrustedA3 i686-pc-linux-gnu-g++ -ggdb3 -o bin/MarkTrustedA3 obj/kmer_freq/MarkTrustedA3.o -L. -L. -Lobj -l_MarkTrustedA3_temp /bin/rm obj/lib_MarkTrustedA1_temp.a ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function bin/checkLock bin/MarkTrustedB1 /bin/rm obj/lib_MarkTrusted5_temp.a /bin/rm obj/lib_MarkTrusted4_temp.a /bin/rm obj/lib_MarkTrusted6_temp.a /bin/rm obj/lib_PrepareAllPathsInput_temp.a i686-pc-linux-gnu-g++ -ggdb3 -o bin/MarkTrustedB1 obj/kmer_freq/MarkTrustedB1.o -L. -L. -Lobj -l_MarkTrustedB1_temp ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function bin/checkLock bin/PanForGold i686-pc-linux-gnu-g++ -ggdb3 -o bin/PanForGold obj/paths/PanForGold.o -L. -L. -Lobj -lpthread -l_PanForGold_temp ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function bin/checkLock bin/PathsToLocs i686-pc-linux-gnu-g++ -ggdb3 -o bin/PathsToLocs obj/paths/simulation/PathsToLocs.o -L. -L. -Lobj -lpthread -l_PathsToLocs_temp ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function /bin/rm -f obj/lib_TrueUnipathCoverage_temp.a /bin/rm -f obj/lib_UnipatherBig_temp.a ar -qc obj/lib_TrueUnipathCoverage_temp.a obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalReadPart.o obj/HashSimple.o obj/MemberOf.o obj/ParseRange.o obj/ParseSet.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecString.o obj/math/Arith.o obj/math/Functions.o obj/paths/KmerPath.o obj/paths/KmerPathInterval.o obj/paths/simulation/TrueUnipathCoverage.o obj/system/Assert.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o ar -qc obj/lib_UnipatherBig_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/Equiv.o obj/FastIfstream.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/PairsHandler.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadPairing.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecOverlap.o obj/VecString.o obj/charTranslations.o obj/graph/Digraph.o obj/graphics/BasicGraphics.o obj/graphics/Color.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/pairwise_aligners/MatchList.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/pairwise_aligners/PerfectAligner.o obj/pairwise_aligners/SmithWatBandedA.o obj/paths/AddSuperReads.o obj/paths/AlignAndMerge.o obj/paths/CompletedInsert.o obj/paths/ExtendUnipathSeqs.o obj/paths/FindClosures.o obj/paths/GapSkip.o obj/paths/HyperKmerPath.o obj/paths/HyperKmerPathCleaner.o obj/paths/ImproperMerge.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathBreadthSearcher.o obj/paths/KmerPathDatabase.o obj/paths/KmerPathInterval.o obj/paths/KmerPathMuxSearcher.o obj/paths/Mux.o obj/paths/MuxGraph.o obj/paths/MuxSearchAgent.o obj/paths/MuxSearchPolicy.o obj/paths/MuxToPath.o obj/paths/MuxWalkGraph.o obj/paths/NegativeGapValidator.o obj/paths/OffsetTracker.o obj/paths/PairedPair.o obj/paths/PathEmbedding.o obj/paths/PathWalk.o obj/paths/PileReadsOnPath.o obj/paths/ReadFillDatabase.o obj/paths/ReadFillRecord.o obj/paths/SimpleWalk.o obj/paths/SubsumptionList.o obj/paths/Unipath.o obj/paths/UnipathSeq.o obj/paths/UnipathSeqBuilder.o obj/paths/UnipatherBig.o obj/paths/VerifyGapLengths.o obj/paths/WalkPlot.o obj/paths/simulation/Placement.o obj/random/Bernoulli.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o /bin/rm -f obj/lib_ProvisionalEdits_temp.a /bin/rm -f obj/lib_Quala2Qualb_temp.a ar -qc obj/lib_ProvisionalEdits_temp.a obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/FastIfstream.o obj/Feudal.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/ParseRange.o obj/ParseSet.o obj/Qualvector.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecString.o obj/charTranslations.o obj/kmer_freq/KmerFrequencyTable.o obj/kmer_freq/KmerShortMap.o obj/kmer_freq/MakeProvisionalChanges.o obj/kmer_freq/ProvisionalEdits.o obj/kmer_freq/WriteKmerFrequencies.o obj/math/Arith.o obj/math/Combinatorics.o obj/math/Functions.o obj/math/HoInterval.o obj/paths/BaseErrorProb.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o ar -qc obj/lib_Quala2Qualb_temp.a obj/FastIfstream.o obj/Feudal.o obj/FeudalReadPart.o obj/MemberOf.o obj/ParseRange.o obj/ParseSet.o obj/Qualvector.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecString.o obj/math/Arith.o obj/math/Functions.o obj/system/Assert.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o obj/util/Quala2Qualb.o /bin/rm -f obj/lib_Qualb2Quala_temp.a ar -qc obj/lib_Qualb2Quala_temp.a obj/FastIfstream.o obj/Feudal.o obj/FeudalReadPart.o obj/MemberOf.o obj/ParseRange.o obj/ParseSet.o obj/Qualvector.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecString.o obj/math/Arith.o obj/math/Functions.o obj/system/Assert.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o obj/util/Qualb2Quala.o bin/checkLock bin/TrueUnipathCoverage bin/checkLock bin/Quala2Qualb i686-pc-linux-gnu-g++ -ggdb3 -o bin/TrueUnipathCoverage obj/paths/simulation/TrueUnipathCoverage.o -L. -L. -Lobj -l_TrueUnipathCoverage_temp i686-pc-linux-gnu-g++ -ggdb3 -o bin/Quala2Qualb obj/util/Quala2Qualb.o -L. -L. -Lobj -l_Quala2Qualb_temp bin/checkLock bin/Qualb2Quala i686-pc-linux-gnu-g++ -ggdb3 -o bin/Qualb2Quala obj/util/Qualb2Quala.o -L. -L. -Lobj -l_Qualb2Quala_temp /bin/rm obj/lib_TrueUnipathCoverage_temp.a /bin/rm obj/lib_Quala2Qualb_temp.a /bin/rm obj/lib_PathsToLocs_temp.a /bin/rm obj/lib_MarkTrustedB1_temp.a ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function /bin/rm obj/lib_MarkTrustedA3_temp.a /bin/rm obj/lib_PanForGold_temp.a bin/checkLock bin/UnipatherBig i686-pc-linux-gnu-g++ -ggdb3 -o bin/UnipatherBig obj/paths/UnipatherBig.o -L. -L. -Lobj -l_UnipatherBig_temp bin/checkLock bin/ProvisionalEdits i686-pc-linux-gnu-g++ -ggdb3 -o bin/ProvisionalEdits obj/kmer_freq/ProvisionalEdits.o -L. -L. -Lobj -l_ProvisionalEdits_temp /bin/rm -f obj/lib_QueryLookupTable_temp.a /bin/rm -f obj/lib_RePath_temp.a ar -qc obj/lib_RePath_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/FastIfstream.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecString.o obj/charTranslations.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/paths/KmerPath.o obj/paths/KmerPathInterval.o obj/paths/MakeAlignsPathsParallelX.o obj/paths/RePath.o obj/paths/ReadsToPathsCoreX.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/Threads.o obj/system/TraceVal.o obj/system/Types.o obj/system/WorklistUtils.o obj/util/Kronos.o ar -qc obj/lib_QueryLookupTable_temp.a obj/Alignment.o obj/Basevector.o obj/Bitvector.o obj/BlockAlign.o obj/Charvector.o obj/CompressedSequence.o obj/FastIfstream.o obj/FastaConverter.o obj/FastaFilestream.o obj/FastaFilestreamPreview.o obj/FastaNameParser.o obj/FastaVerifier.o obj/FetchReads.o obj/Feudal.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/IndexedAlignmentPlusVector.o obj/MemberOf.o obj/PackAlign.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadPairing.o obj/ScoreAlignment.o obj/SeqInterval.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecString.o obj/charTranslations.o obj/lookup/FlowAlignSummary.o obj/lookup/Hit.o obj/lookup/LookAlign.o obj/lookup/LookupTable.o obj/lookup/PerfectCount.o obj/lookup/PerfectLookup.o obj/lookup/QueryLookupTable.o obj/lookup/QueryLookupTableCore.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/pairwise_aligners/AlignFromMutmers.o obj/pairwise_aligners/AlignFromMutmersAndSW.o obj/pairwise_aligners/MakeAlignsMethod.o obj/pairwise_aligners/Mutmer.o obj/pairwise_aligners/SmithWatAffine.o obj/pairwise_aligners/SmithWatBandedA.o obj/pairwise_aligners/SmithWatFree.o obj/random/Random.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o /bin/rm -f obj/lib_RecoverUnipaths_temp.a /bin/rm -f obj/lib_RemoveSuspiciousReads2_temp.a ar -qc obj/lib_RecoverUnipaths_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/BlockAlign.o obj/Equiv.o obj/FastIfstream.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/PairsHandler.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadLocation.o obj/ReadPairing.o obj/ScoreAlignment.o obj/SeqInterval.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecOverlap.o obj/VecString.o obj/charTranslations.o obj/graph/Digraph.o obj/graphics/BasicGraphics.o obj/graphics/Color.o obj/lookup/Hit.o obj/lookup/LookAlign.o obj/lookup/LookupTable.o obj/lookup/PerfectCount.o obj/lookup/PerfectLookup.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/pairwise_aligners/MatchList.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/pairwise_aligners/PerfectAligner.o obj/pairwise_aligners/SmithWatBandedA.o obj/paths/AddSuperReads.o obj/paths/AlignAndMerge.o obj/paths/CompletedInsert.o obj/paths/ExtendUnipathSeqs.o obj/paths/FindClosures.o obj/paths/GapSkip.o obj/paths/HyperKmerPath.o obj/paths/HyperKmerPathCleaner.o obj/paths/ImproperMerge.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathBreadthSearcher.o obj/paths/KmerPathDatabase.o obj/paths/KmerPathInterval.o obj/paths/KmerPathMuxSearcher.o obj/paths/MakeAlignsPathsParallelX.o obj/paths/Mux.o obj/paths/MuxGraph.o obj/paths/MuxSearchAgent.o obj/paths/MuxSearchPolicy.o obj/paths/MuxToPath.o obj/paths/MuxWalkGraph.o obj/paths/NegativeGapValidator.o obj/paths/OffsetTracker.o obj/paths/PairedPair.o obj/paths/PathEmbedding.o obj/paths/PathWalk.o obj/paths/PdfEntry.o obj/paths/PileReadsOnPath.o obj/paths/ReadFillDatabase.o obj/paths/ReadFillRecord.o obj/paths/ReadsToPathsCoreX.o obj/paths/RecoverUnipaths.o obj/paths/SimpleWalk.o obj/paths/SubsumptionList.o obj/paths/UnibaseUtils.o obj/paths/Unipath.o obj/paths/UnipathNhood.o obj/paths/UnipathNhoodCommon.o obj/paths/UnipathSeq.o obj/paths/UnipathSeqBuilder.o obj/paths/VerifyGapLengths.o obj/paths/WalkPlot.o obj/paths/simulation/Placement.o obj/random/Bernoulli.o obj/random/NormalDistribution.o obj/random/NormalRandom.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/Threads.o obj/system/TraceVal.o obj/system/Types.o obj/system/WorklistUtils.o obj/util/Kronos.o ar -qc obj/lib_RemoveSuspiciousReads2_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/Equiv.o obj/FastIfstream.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/PairsHandler.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadLocation.o obj/ReadPairing.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecOverlap.o obj/VecString.o obj/charTranslations.o obj/graph/Digraph.o obj/graphics/BasicGraphics.o obj/graphics/Color.o obj/kmer_freq/KmerShortMap.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/pairwise_aligners/MatchList.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/pairwise_aligners/PerfectAligner.o obj/pairwise_aligners/SmithWatBandedA.o obj/paths/AddSuperReads.o obj/paths/AlignAndMerge.o obj/paths/CompletedInsert.o obj/paths/ExtendUnipathSeqs.o obj/paths/FindClosures.o obj/paths/GapSkip.o obj/paths/HyperKmerPath.o obj/paths/HyperKmerPathCleaner.o obj/paths/ImproperMerge.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathBreadthSearcher.o obj/paths/KmerPathDatabase.o obj/paths/KmerPathInterval.o obj/paths/KmerPathMuxSearcher.o obj/paths/MakeAlignsPathsParallelX.o obj/paths/Mux.o obj/paths/MuxGraph.o obj/paths/MuxSearchAgent.o obj/paths/MuxSearchPolicy.o obj/paths/MuxToPath.o obj/paths/MuxWalkGraph.o obj/paths/NearUnipathErrors.o obj/paths/NegativeGapValidator.o obj/paths/OffsetTracker.o obj/paths/PairedPair.o obj/paths/PathEmbedding.o obj/paths/PathWalk.o obj/paths/PdfEntry.o obj/paths/PileReadsOnPath.o obj/paths/ReadFillDatabase.o obj/paths/ReadFillRecord.o obj/paths/ReadsToPathsCoreX.o obj/paths/RemoveSuspiciousReads2.o obj/paths/SimpleWalk.o obj/paths/SubsumptionList.o obj/paths/Unipath.o obj/paths/UnipathCoverageCore.o obj/paths/UnipathSeq.o obj/paths/UnipathSeqBuilder.o obj/paths/VerifyGapLengths.o obj/paths/WalkPlot.o obj/random/Bernoulli.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/Threads.o obj/system/TraceVal.o obj/system/Types.o obj/system/Utils.o obj/system/WorklistUtils.o obj/util/Kronos.o /bin/rm -f obj/lib_RescueKmers_temp.a ar -qc obj/lib_RescueKmers_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/BlockAlign.o obj/Equiv.o obj/FastIfstream.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/PairsHandler.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadPairing.o obj/ScoreAlignment.o obj/SeqInterval.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecOverlap.o obj/VecString.o obj/charTranslations.o obj/graph/Digraph.o obj/graphics/BasicGraphics.o obj/graphics/Color.o obj/kmer_freq/KAdjGraph.o obj/lookup/Hit.o obj/lookup/LookAlign.o obj/lookup/LookupTable.o obj/lookup/PerfectCount.o obj/lookup/PerfectLookup.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/pairwise_aligners/MatchList.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/pairwise_aligners/PerfectAligner.o obj/pairwise_aligners/SmithWatBandedA.o obj/paths/AddSuperReads.o obj/paths/AlignAndMerge.o obj/paths/CompletedInsert.o obj/paths/ExtendUnipathSeqs.o obj/paths/FindClosures.o obj/paths/GapSkip.o obj/paths/HyperKmerPath.o obj/paths/HyperKmerPathCleaner.o obj/paths/ImproperMerge.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathBreadthSearcher.o obj/paths/KmerPathDatabase.o obj/paths/KmerPathInterval.o obj/paths/KmerPathMuxSearcher.o obj/paths/MakeAlignsPathsParallelX.o obj/paths/Mux.o obj/paths/MuxGraph.o obj/paths/MuxSearchAgent.o obj/paths/MuxSearchPolicy.o obj/paths/MuxToPath.o obj/paths/MuxWalkGraph.o obj/paths/NegativeGapValidator.o obj/paths/OffsetTracker.o obj/paths/PairedPair.o obj/paths/PathEmbedding.o obj/paths/PathWalk.o obj/paths/PileReadsOnPath.o obj/paths/ReadFillDatabase.o obj/paths/ReadFillRecord.o obj/paths/ReadsToPathsCoreX.o obj/paths/RescueKmers.o obj/paths/SimpleWalk.o obj/paths/SubsumptionList.o obj/paths/UnibaseUtils.o obj/paths/Unipath.o obj/paths/UnipathSeq.o obj/paths/UnipathSeqBuilder.o obj/paths/VerifyGapLengths.o obj/paths/WalkPlot.o obj/random/Bernoulli.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/Threads.o obj/system/TraceVal.o obj/system/Types.o obj/system/WorklistUtils.o obj/util/Kronos.o /bin/rm -f obj/lib_Shaver_temp.a ar -qc obj/lib_Shaver_temp.a obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/Equiv.o obj/FastIfstream.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/ParseRange.o obj/ParseSet.o obj/Qualvector.o obj/ReadPairing.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecString.o obj/charTranslations.o obj/graph/Digraph.o obj/kmer_freq/KAdjGraph.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/paths/KmerPath.o obj/paths/KmerPathInterval.o obj/paths/Shaver.o obj/paths/UnibaseUtils.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o /bin/rm obj/lib_Qualb2Quala_temp.a bin/checkLock bin/QueryLookupTable /bin/rm -f obj/lib_ShortQueryLookup_temp.a i686-pc-linux-gnu-g++ -ggdb3 -o bin/QueryLookupTable obj/lookup/QueryLookupTable.o -L. -L. -Lobj -l_QueryLookupTable_temp ar -qc obj/lib_ShortQueryLookup_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/BlockAlign.o obj/Charvector.o obj/CompressedSequence.o obj/FastIfstream.o obj/FastaConverter.o obj/FastaFileset.o obj/FastaFilestream.o obj/FastaFilestreamPreview.o obj/FastaNameParser.o obj/FastaVerifier.o obj/Feudal.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/IndexedAlignmentPlusVector.o obj/MemberOf.o obj/PackAlign.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadPairing.o obj/ScoreAlignment.o obj/SeqInterval.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecString.o obj/charTranslations.o obj/lookup/AlignCollector.o obj/lookup/Hit.o obj/lookup/HitReceiver.o obj/lookup/ImperfectLookup.o obj/lookup/LookAlign.o obj/lookup/LookupTable.o obj/lookup/PerfectCount.o obj/lookup/PerfectLookup.o obj/lookup/ShortQueryLookup.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/pairwise_aligners/Mutmer.o obj/pairwise_aligners/SmithWatBandedA.o obj/random/Random.o obj/solid/Solid.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function /bin/rm obj/lib_ProvisionalEdits_temp.a /bin/rm obj/lib_QueryLookupTable_temp.a ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function bin/checkLock bin/RePath i686-pc-linux-gnu-g++ -ggdb3 -o bin/RePath obj/paths/RePath.o -L. -L. -Lobj -lpthread -l_RePath_temp /bin/rm obj/lib_UnipatherBig_temp.a ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function bin/checkLock bin/ShortQueryLookup i686-pc-linux-gnu-g++ -ggdb3 -o bin/ShortQueryLookup obj/lookup/ShortQueryLookup.o -L. -L. -Lobj -l_ShortQueryLookup_temp ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function bin/checkLock bin/Shaver i686-pc-linux-gnu-g++ -ggdb3 -o bin/Shaver obj/paths/Shaver.o -L. -L. -Lobj -l_Shaver_temp ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function /bin/rm -f obj/lib_SimulateReads_temp.a ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function bin/checkLock bin/RemoveSuspiciousReads2 i686-pc-linux-gnu-g++ -ggdb3 -o bin/RemoveSuspiciousReads2 obj/paths/RemoveSuspiciousReads2.o -L. -L. -Lobj -lpthread -l_RemoveSuspiciousReads2_temp /bin/rm -f obj/lib_Singe_temp.a bin/checkLock bin/RescueKmers bin/checkLock bin/RecoverUnipaths ar -qc obj/lib_SimulateReads_temp.a obj/Alignment.o obj/AlignmentProfile.o obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/FastIfstream.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadLocation.o obj/ReadPairing.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecString.o obj/charTranslations.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/pairwise_aligners/Mutmer.o obj/paths/KmerPath.o obj/paths/KmerPathInterval.o obj/paths/simulation/ErrorGenerator.o obj/paths/simulation/SimulateReads.o obj/random/NormalDistribution.o obj/random/NormalRandom.o obj/random/Random.o obj/random/Shuffle.o obj/solexa/SolexaMetrics.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o ar -qc obj/lib_Singe_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/Equiv.o obj/FastIfstream.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/PairsHandler.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadPairing.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecOverlap.o obj/VecString.o obj/charTranslations.o obj/graph/Digraph.o obj/graphics/BasicGraphics.o obj/graphics/Color.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/pairwise_aligners/MatchList.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/pairwise_aligners/PerfectAligner.o obj/pairwise_aligners/SmithWatBandedA.o obj/paths/AddSuperReads.o obj/paths/AlignAndMerge.o obj/paths/CompletedInsert.o obj/paths/ExtendUnipathSeqs.o obj/paths/FindClosures.o obj/paths/GapSkip.o obj/paths/HyperKmerPath.o obj/paths/HyperKmerPathCleaner.o obj/paths/ImproperMerge.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathBreadthSearcher.o obj/paths/KmerPathDatabase.o obj/paths/KmerPathInterval.o obj/paths/KmerPathMuxSearcher.o obj/paths/MakeAlignsPathsParallelX.o obj/paths/Mux.o obj/paths/MuxGraph.o obj/paths/MuxSearchAgent.o obj/paths/MuxSearchPolicy.o obj/paths/MuxToPath.o obj/paths/MuxWalkGraph.o obj/paths/NegativeGapValidator.o obj/paths/OffsetTracker.o obj/paths/PairedPair.o obj/paths/PathEmbedding.o obj/paths/PathWalk.o obj/paths/PileReadsOnPath.o obj/paths/ReadFillDatabase.o obj/paths/ReadFillRecord.o obj/paths/ReadsToPathsCoreX.o obj/paths/SimpleWalk.o obj/paths/Singe.o obj/paths/SubsumptionList.o obj/paths/Unipath.o obj/paths/UnipathSeq.o obj/paths/UnipathSeqBuilder.o obj/paths/VerifyGapLengths.o obj/paths/WalkPlot.o obj/random/Bernoulli.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/Threads.o obj/system/TraceVal.o obj/system/Types.o obj/system/WorklistUtils.o obj/util/Kronos.o i686-pc-linux-gnu-g++ -ggdb3 -o bin/RescueKmers obj/paths/RescueKmers.o -L. -L. -Lobj -lpthread -l_RescueKmers_temp i686-pc-linux-gnu-g++ -ggdb3 -o bin/RecoverUnipaths obj/paths/RecoverUnipaths.o -L. -L. -Lobj -lpthread -l_RecoverUnipaths_temp /bin/rm -f obj/lib_StandardScaffold_temp.a /bin/rm -f obj/lib_TrustedFromQuals_temp.a ar -qc obj/lib_StandardScaffold_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/Equiv.o obj/FastIfstream.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/PairsHandler.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadPairing.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecOverlap.o obj/VecString.o obj/charTranslations.o obj/graph/Digraph.o obj/graphics/BasicGraphics.o obj/graphics/Color.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/pairwise_aligners/MatchList.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/pairwise_aligners/PerfectAligner.o obj/pairwise_aligners/SmithWatBandedA.o obj/paths/AddSuperReads.o obj/paths/AlignAndMerge.o obj/paths/CompletedInsert.o obj/paths/ExtendUnipathSeqs.o obj/paths/FindClosures.o obj/paths/GapSkip.o obj/paths/HyperKmerPath.o obj/paths/HyperKmerPathCleaner.o obj/paths/ImproperMerge.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathBreadthSearcher.o obj/paths/KmerPathDatabase.o obj/paths/KmerPathInterval.o obj/paths/KmerPathMuxSearcher.o obj/paths/Mux.o obj/paths/MuxGraph.o obj/paths/MuxSearchAgent.o obj/paths/MuxSearchPolicy.o obj/paths/MuxToPath.o obj/paths/MuxWalkGraph.o obj/paths/NegativeGapValidator.o obj/paths/OffsetTracker.o obj/paths/PairedPair.o obj/paths/PathEmbedding.o obj/paths/PathWalk.o obj/paths/PileReadsOnPath.o obj/paths/ReadFillDatabase.o obj/paths/ReadFillRecord.o obj/paths/SimpleWalk.o obj/paths/StandardScaffold.o obj/paths/SubsumptionList.o obj/paths/Unipath.o obj/paths/UnipathSeq.o obj/paths/UnipathSeqBuilder.o obj/paths/VerifyGapLengths.o obj/paths/WalkPlot.o obj/random/Bernoulli.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o ar -qc obj/lib_TrustedFromQuals_temp.a obj/Basevector.o obj/Bitvector.o obj/FastIfstream.o obj/Feudal.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/MemberOf.o obj/ParseRange.o obj/ParseSet.o obj/Qualvector.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecString.o obj/charTranslations.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/paths/TrustedFromQuals.o obj/random/Random.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o /bin/rm -f obj/lib_UnibaseCopyNumber_temp.a ar -qc obj/lib_UnibaseCopyNumber_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/BlockAlign.o obj/Equiv.o obj/FastIfstream.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/PairsHandler.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadPairing.o obj/ScoreAlignment.o obj/SeqInterval.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecOverlap.o obj/VecString.o obj/charTranslations.o obj/graph/Digraph.o obj/graphics/BasicGraphics.o obj/graphics/Color.o obj/lookup/LookAlign.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/pairwise_aligners/MatchList.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/pairwise_aligners/PerfectAligner.o obj/pairwise_aligners/SmithWatBandedA.o obj/paths/AddSuperReads.o obj/paths/AlignAndMerge.o obj/paths/CompletedInsert.o obj/paths/ExtendUnipathSeqs.o obj/paths/FindClosures.o obj/paths/GapSkip.o obj/paths/HyperKmerPath.o obj/paths/HyperKmerPathCleaner.o obj/paths/ImproperMerge.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathBreadthSearcher.o obj/paths/KmerPathDatabase.o obj/paths/KmerPathInterval.o obj/paths/KmerPathMuxSearcher.o obj/paths/Mux.o obj/paths/MuxGraph.o obj/paths/MuxSearchAgent.o obj/paths/MuxSearchPolicy.o obj/paths/MuxToPath.o obj/paths/MuxWalkGraph.o obj/paths/NegativeGapValidator.o obj/paths/OffsetTracker.o obj/paths/PairedPair.o obj/paths/PathEmbedding.o obj/paths/PathWalk.o obj/paths/PdfEntry.o obj/paths/PileReadsOnPath.o obj/paths/ReadFillDatabase.o obj/paths/ReadFillRecord.o obj/paths/SimpleWalk.o obj/paths/SubsumptionList.o obj/paths/UnibaseCopyNumber.o obj/paths/UnibaseUtils.o obj/paths/Unipath.o obj/paths/UnipathCoverageCore.o obj/paths/UnipathSeq.o obj/paths/UnipathSeqBuilder.o obj/paths/VerifyGapLengths.o obj/paths/WalkPlot.o obj/random/Bernoulli.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o bin/checkLock bin/TrustedFromQuals i686-pc-linux-gnu-g++ -ggdb3 -o bin/TrustedFromQuals obj/paths/TrustedFromQuals.o -L. -L. -Lobj -l_TrustedFromQuals_temp ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function /bin/rm obj/lib_ShortQueryLookup_temp.a /bin/rm obj/lib_TrustedFromQuals_temp.a bin/checkLock bin/SimulateReads i686-pc-linux-gnu-g++ -ggdb3 -o bin/SimulateReads obj/paths/simulation/SimulateReads.o -L. -L. -Lobj -l_SimulateReads_temp /bin/rm obj/lib_RePath_temp.a /bin/rm obj/lib_Shaver_temp.a /bin/rm obj/lib_RemoveSuspiciousReads2_temp.a /bin/rm obj/lib_RescueKmers_temp.a /bin/rm obj/lib_RecoverUnipaths_temp.a bin/checkLock bin/UnibaseCopyNumber i686-pc-linux-gnu-g++ -ggdb3 -o bin/UnibaseCopyNumber obj/paths/UnibaseCopyNumber.o -L. -L. -Lobj -l_UnibaseCopyNumber_temp ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function bin/checkLock bin/Singe i686-pc-linux-gnu-g++ -ggdb3 -o bin/Singe obj/paths/Singe.o -L. -L. -Lobj -lpthread -l_Singe_temp ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function bin/checkLock bin/StandardScaffold i686-pc-linux-gnu-g++ -ggdb3 -o bin/StandardScaffold obj/paths/StandardScaffold.o -L. -L. -Lobj -l_StandardScaffold_temp /bin/rm -f obj/lib_UnibaseCopyNumberIdeal_temp.a ar -qc obj/lib_UnibaseCopyNumberIdeal_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/BinsVec.o obj/Bitvector.o obj/BlockAlign.o obj/Equiv.o obj/FastIfstream.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/PairsHandler.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadPairing.o obj/ScoreAlignment.o obj/SeqInterval.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecOverlap.o obj/VecString.o obj/charTranslations.o obj/graph/Digraph.o obj/graphics/BasicGraphics.o obj/graphics/Color.o obj/lookup/AlignCollector.o obj/lookup/Hit.o obj/lookup/HitReceiver.o obj/lookup/ImperfectLookup.o obj/lookup/LookAlign.o obj/lookup/LookupTable.o obj/lookup/PerfectCount.o obj/lookup/PerfectLookup.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/pairwise_aligners/MatchList.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/pairwise_aligners/PerfectAligner.o obj/pairwise_aligners/SmithWatBandedA.o obj/paths/AddSuperReads.o obj/paths/AlignAndMerge.o obj/paths/CompletedInsert.o obj/paths/ExtendUnipathSeqs.o obj/paths/FindClosures.o obj/paths/GapSkip.o obj/paths/HyperKmerPath.o obj/paths/HyperKmerPathCleaner.o obj/paths/ImproperMerge.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathBreadthSearcher.o obj/paths/KmerPathDatabase.o obj/paths/KmerPathInterval.o obj/paths/KmerPathMuxSearcher.o obj/paths/Mux.o obj/paths/MuxGraph.o obj/paths/MuxSearchAgent.o obj/paths/MuxSearchPolicy.o obj/paths/MuxToPath.o obj/paths/MuxWalkGraph.o obj/paths/NegativeGapValidator.o obj/paths/OffsetTracker.o obj/paths/PairedPair.o obj/paths/PathEmbedding.o obj/paths/PathWalk.o obj/paths/PdfEntry.o obj/paths/PileReadsOnPath.o obj/paths/ReadFillDatabase.o obj/paths/ReadFillRecord.o obj/paths/SimpleWalk.o obj/paths/SubsumptionList.o obj/paths/UnibaseCopyNumberIdeal.o obj/paths/UnibaseUtils.o obj/paths/Unipath.o obj/paths/UnipathSeq.o obj/paths/UnipathSeqBuilder.o obj/paths/VerifyGapLengths.o obj/paths/WalkPlot.o obj/paths/simulation/GenomePlacement.o obj/random/Bernoulli.o obj/random/Random.o obj/solid/Solid.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o /bin/rm -f obj/lib_UnibasesFromTrustedKAdjs_temp.a ar -qc obj/lib_UnibasesFromTrustedKAdjs_temp.a obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/Equiv.o obj/FastIfstream.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/ParseRange.o obj/ParseSet.o obj/Qualvector.o obj/ReadPairing.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecString.o obj/charTranslations.o obj/graph/Digraph.o obj/kmer_freq/KAdjGraph.o obj/kmer_freq/UnibasesFromTrustedKAdjs.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathInterval.o obj/paths/PathEmbedding.o obj/paths/UnibaseUtils.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o /bin/rm -f obj/lib_UnipathEval_temp.a /bin/rm -f obj/lib_UnipathLocs_temp.a ar -qc obj/lib_UnipathEval_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/BinsVec.o obj/Bitvector.o obj/BlockAlign.o obj/Equiv.o obj/FastIfstream.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/PairsHandler.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadPairing.o obj/ScoreAlignment.o obj/SeqInterval.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecOverlap.o obj/VecString.o obj/charTranslations.o obj/graph/Digraph.o obj/graphics/BasicGraphics.o obj/graphics/Color.o obj/lookup/AlignCollector.o obj/lookup/Hit.o obj/lookup/HitReceiver.o obj/lookup/ImperfectLookup.o obj/lookup/LookAlign.o obj/lookup/LookupTable.o obj/lookup/PerfectCount.o obj/lookup/PerfectLookup.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/pairwise_aligners/MatchList.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/pairwise_aligners/PerfectAligner.o obj/pairwise_aligners/SmithWatBandedA.o obj/paths/AddSuperReads.o obj/paths/AlignAndMerge.o obj/paths/CompletedInsert.o obj/paths/ExtendUnipathSeqs.o obj/paths/FindClosures.o obj/paths/GapSkip.o obj/paths/HyperKmerPath.o obj/paths/HyperKmerPathCleaner.o obj/paths/ImproperMerge.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathBreadthSearcher.o obj/paths/KmerPathDatabase.o obj/paths/KmerPathInterval.o obj/paths/KmerPathMuxSearcher.o obj/paths/Mux.o obj/paths/MuxGraph.o obj/paths/MuxSearchAgent.o obj/paths/MuxSearchPolicy.o obj/paths/MuxToPath.o obj/paths/MuxWalkGraph.o obj/paths/NegativeGapValidator.o obj/paths/OffsetTracker.o obj/paths/PairedPair.o obj/paths/PathEmbedding.o obj/paths/PathWalk.o obj/paths/PdfEntry.o obj/paths/PileReadsOnPath.o obj/paths/ReadFillDatabase.o obj/paths/ReadFillRecord.o obj/paths/SimpleWalk.o obj/paths/SubsumptionList.o obj/paths/UnibaseUtils.o obj/paths/Unipath.o obj/paths/UnipathEval.o obj/paths/UnipathSeq.o obj/paths/UnipathSeqBuilder.o obj/paths/VerifyGapLengths.o obj/paths/WalkPlot.o obj/paths/simulation/GenomePlacement.o obj/random/Bernoulli.o obj/random/Random.o obj/solid/Solid.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/system/Utils.o obj/util/Kronos.o ar -qc obj/lib_UnipathLocs_temp.a obj/Basevector.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalReadPart.o obj/HashSimple.o obj/MemberOf.o obj/ParseRange.o obj/ParseSet.o obj/ReadLocation.o obj/ReadPairing.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecString.o obj/charTranslations.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/paths/KmerPath.o obj/paths/KmerPathInterval.o obj/paths/PdfEntry.o obj/paths/UnipathLocs.o obj/random/Random.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o /bin/rm -f obj/lib_Unipather_temp.a /bin/rm -f obj/lib_UnipathsFromTrustedKmers_temp.a ar -qc obj/lib_Unipather_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/Equiv.o obj/FastIfstream.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/PairsHandler.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadPairing.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecOverlap.o obj/VecString.o obj/charTranslations.o obj/graph/Digraph.o obj/graphics/BasicGraphics.o obj/graphics/Color.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/pairwise_aligners/MatchList.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/pairwise_aligners/PerfectAligner.o obj/pairwise_aligners/SmithWatBandedA.o obj/paths/AddSuperReads.o obj/paths/AlignAndMerge.o obj/paths/CompletedInsert.o obj/paths/ExtendUnipathSeqs.o obj/paths/FindClosures.o obj/paths/GapSkip.o obj/paths/HyperKmerPath.o obj/paths/HyperKmerPathCleaner.o obj/paths/ImproperMerge.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathBreadthSearcher.o obj/paths/KmerPathDatabase.o obj/paths/KmerPathInterval.o obj/paths/KmerPathMuxSearcher.o obj/paths/Mux.o obj/paths/MuxGraph.o obj/paths/MuxSearchAgent.o obj/paths/MuxSearchPolicy.o obj/paths/MuxToPath.o obj/paths/MuxWalkGraph.o obj/paths/NegativeGapValidator.o obj/paths/OffsetTracker.o obj/paths/PairedPair.o obj/paths/PathEmbedding.o obj/paths/PathWalk.o obj/paths/PileReadsOnPath.o obj/paths/ReadFillDatabase.o obj/paths/ReadFillRecord.o obj/paths/SimpleWalk.o obj/paths/SubsumptionList.o obj/paths/Unipath.o obj/paths/UnipathSeq.o obj/paths/UnipathSeqBuilder.o obj/paths/Unipather.o obj/paths/VerifyGapLengths.o obj/paths/WalkPlot.o obj/paths/simulation/Placement.o obj/random/Bernoulli.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o ar -qc obj/lib_UnipathsFromTrustedKmers_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/Equiv.o obj/FastIfstream.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/PairsHandler.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadPairing.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecOverlap.o obj/VecString.o obj/charTranslations.o obj/graph/Digraph.o obj/graphics/BasicGraphics.o obj/graphics/Color.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/pairwise_aligners/MatchList.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/pairwise_aligners/PerfectAligner.o obj/pairwise_aligners/SmithWatBandedA.o obj/paths/AddSuperReads.o obj/paths/AlignAndMerge.o obj/paths/CompletedInsert.o obj/paths/ExtendUnipathSeqs.o obj/paths/FindClosures.o obj/paths/GapSkip.o obj/paths/HyperKmerPath.o obj/paths/HyperKmerPathCleaner.o obj/paths/ImproperMerge.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathBreadthSearcher.o obj/paths/KmerPathDatabase.o obj/paths/KmerPathInterval.o obj/paths/KmerPathMuxSearcher.o obj/paths/Mux.o obj/paths/MuxGraph.o obj/paths/MuxSearchAgent.o obj/paths/MuxSearchPolicy.o obj/paths/MuxToPath.o obj/paths/MuxWalkGraph.o obj/paths/NegativeGapValidator.o obj/paths/OffsetTracker.o obj/paths/PairedPair.o obj/paths/PathEmbedding.o obj/paths/PathWalk.o obj/paths/PileReadsOnPath.o obj/paths/ReadFillDatabase.o obj/paths/ReadFillRecord.o obj/paths/SimpleWalk.o obj/paths/SubsumptionList.o obj/paths/Unipath.o obj/paths/UnipathSeq.o obj/paths/UnipathSeqBuilder.o obj/paths/UnipathsFromTrustedKmers.o obj/paths/VerifyGapLengths.o obj/paths/WalkPlot.o obj/random/Bernoulli.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o /bin/rm -f obj/lib_UniquifyAligns2_temp.a ar -qc obj/lib_UniquifyAligns2_temp.a obj/Alignment.o obj/Basevector.o obj/BlockAlign.o obj/FastIfstream.o obj/Feudal.o obj/FeudalReadPart.o obj/IndexedAlignmentPlusVector.o obj/MemberOf.o obj/PackAlign.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadPairing.o obj/ScoreAlignment.o obj/SeqInterval.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecString.o obj/charTranslations.o obj/lookup/Hit.o obj/lookup/LookAlign.o obj/lookup/LookupTable.o obj/lookup/PerfectCount.o obj/lookup/PerfectLookup.o obj/lookup/UniquifyAligns2.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/pairwise_aligners/Mutmer.o obj/random/Random.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o bin/checkLock bin/UnipathLocs i686-pc-linux-gnu-g++ -ggdb3 -o bin/UnipathLocs obj/paths/UnipathLocs.o -L. -L. -Lobj -l_UnipathLocs_temp bin/checkLock bin/UniquifyAligns2 i686-pc-linux-gnu-g++ -ggdb3 -o bin/UniquifyAligns2 obj/lookup/UniquifyAligns2.o -L. -L. -Lobj -l_UniquifyAligns2_temp ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function /bin/rm obj/lib_UnibaseCopyNumber_temp.a /bin/rm obj/lib_UnipathLocs_temp.a /bin/rm obj/lib_UniquifyAligns2_temp.a bin/checkLock bin/UnibaseCopyNumberIdeal i686-pc-linux-gnu-g++ -ggdb3 -o bin/UnibaseCopyNumberIdeal obj/paths/UnibaseCopyNumberIdeal.o -L. -L. -Lobj -l_UnibaseCopyNumberIdeal_temp /bin/rm obj/lib_StandardScaffold_temp.a /bin/rm obj/lib_SimulateReads_temp.a bin/checkLock bin/UnibasesFromTrustedKAdjs i686-pc-linux-gnu-g++ -ggdb3 -o bin/UnibasesFromTrustedKAdjs obj/kmer_freq/UnibasesFromTrustedKAdjs.o -L. -L. -Lobj -l_UnibasesFromTrustedKAdjs_temp /bin/rm obj/lib_Singe_temp.a ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function bin/checkLock bin/UnipathsFromTrustedKmers i686-pc-linux-gnu-g++ -ggdb3 -o bin/UnipathsFromTrustedKmers obj/paths/UnipathsFromTrustedKmers.o -L. -L. -Lobj -l_UnipathsFromTrustedKmers_temp /bin/rm -f obj/lib_ViewHyper_temp.a ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function bin/checkLock bin/Unipather i686-pc-linux-gnu-g++ -ggdb3 -o bin/Unipather obj/paths/Unipather.o -L. -L. -Lobj -l_Unipather_temp /bin/rm -f obj/lib_Vote_temp.a bin/checkLock bin/UnipathEval i686-pc-linux-gnu-g++ -ggdb3 -o bin/UnipathEval obj/paths/UnipathEval.o -L. -L. -Lobj -l_UnipathEval_temp /bin/rm -f obj/lib_GenomeToPaths_temp.a ar -qc obj/lib_ViewHyper_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/BinaryIO.o obj/Bitvector.o obj/BlockAlign.o obj/Charvector.o obj/CompressedSequence.o obj/Equiv.o obj/FastIfstream.o obj/FastaConverter.o obj/FastaFilestream.o obj/FastaFilestreamPreview.o obj/FastaNameParser.o obj/FastaVerifier.o obj/FetchReads.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/PairsHandler.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadLocation.o obj/ReadPairing.o obj/ScoreAlignment.o obj/SeqInterval.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecOverlap.o obj/VecString.o obj/charTranslations.o obj/graph/Digraph.o obj/graph/DigraphPaths.o obj/graph/DotUtils.o obj/graphics/BasicGraphics.o obj/graphics/Color.o obj/lookup/AlignUtils.o obj/lookup/FlowAlignSummary.o obj/lookup/Hit.o obj/lookup/LookAlign.o obj/lookup/LookupTable.o obj/lookup/LookupTableBuilder.o obj/lookup/PerfectCount.o obj/lookup/PerfectLookup.o obj/lookup/QueryLookupTableCore.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/pairwise_aligners/AlignFromMutmers.o obj/pairwise_aligners/AlignFromMutmersAndSW.o obj/pairwise_aligners/MakeAlignsMethod.o obj/pairwise_aligners/MatchList.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/pairwise_aligners/PerfectAligner.o obj/pairwise_aligners/SmithWatAffine.o obj/pairwise_aligners/SmithWatBandedA.o obj/pairwise_aligners/SmithWatFree.o obj/paths/AddSuperReads.o obj/paths/AlignAndMerge.o obj/paths/AlignHyperKmerPath.o obj/paths/AlignPairsToHyper.o obj/paths/AlignSeqsToHyper.o obj/paths/CompletedInsert.o obj/paths/DisplayUtils.o obj/paths/EvalUtils.o obj/paths/ExtendUnipathSeqs.o obj/paths/FindClosures.o obj/paths/GapSkip.o obj/paths/HKPScaffolding.o obj/paths/HKPViewer.o obj/paths/HyperKmerPath.o obj/paths/HyperKmerPathCleaner.o obj/paths/ImproperMerge.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathBreadthSearcher.o obj/paths/KmerPathDatabase.o obj/paths/KmerPathInterval.o obj/paths/KmerPathMuxSearcher.o obj/paths/MakeAlignsPathsParallelX.o obj/paths/Mux.o obj/paths/MuxGraph.o obj/paths/MuxSearchAgent.o obj/paths/MuxSearchPolicy.o obj/paths/MuxToPath.o obj/paths/MuxWalkGraph.o obj/paths/NegativeGapValidator.o obj/paths/NormalEdgeGraph.o obj/paths/NormalEdgeScaffold.o obj/paths/OffsetTracker.o obj/paths/PairedPair.o obj/paths/PathEmbedding.o obj/paths/PathWalk.o obj/paths/PileReadsOnPath.o obj/paths/PseudoUnipathGapCloser.o obj/paths/PseudoUnipatherLib.o obj/paths/ReadFillDatabase.o obj/paths/ReadFillRecord.o obj/paths/ReadsToPathsCore.o obj/paths/ReadsToPathsCoreX.o obj/paths/SeqOnHyper.o obj/paths/SimpleWalk.o obj/paths/SubsumptionList.o obj/paths/Unipath.o obj/paths/UnipathSeq.o obj/paths/UnipathSeqBuilder.o obj/paths/VerifyGapLengths.o obj/paths/ViewHyper.o obj/paths/WalkPlot.o obj/paths/simulation/GenomePlacement.o obj/random/Bernoulli.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/HTMLUtils.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/Threads.o obj/system/TimeUtils.o obj/system/TraceVal.o obj/system/Types.o obj/system/WorklistUtils.o obj/util/Kronos.o ar -qc obj/lib_Vote_temp.a obj/Alignment.o obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/BlockAlign.o obj/Equiv.o obj/FastIfstream.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/IndexedAlignmentPlusVector.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/PairsHandler.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadPairing.o obj/ScoreAlignment.o obj/SeqInterval.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecOverlap.o obj/VecString.o obj/charTranslations.o obj/graph/Digraph.o obj/graphics/BasicGraphics.o obj/graphics/Color.o obj/lookup/Hit.o obj/lookup/LookAlign.o obj/lookup/LookupTable.o obj/lookup/PerfectCount.o obj/lookup/PerfectLookup.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/pairwise_aligners/MatchList.o obj/pairwise_aligners/MaxMutmerFromMer.o obj/pairwise_aligners/Mutmer.o obj/pairwise_aligners/PerfectAligner.o obj/pairwise_aligners/SmithWatBandedA.o obj/paths/AddSuperReads.o obj/paths/AlignAndMerge.o obj/paths/CompletedInsert.o obj/paths/ExtendUnipathSeqs.o obj/paths/FindClosures.o obj/paths/GapSkip.o obj/paths/HyperKmerPath.o obj/paths/HyperKmerPathCleaner.o obj/paths/ImproperMerge.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathBreadthSearcher.o obj/paths/KmerPathDatabase.o obj/paths/KmerPathInterval.o obj/paths/KmerPathMuxSearcher.o obj/paths/MakeAlignsPathsParallelX.o obj/paths/Mux.o obj/paths/MuxGraph.o obj/paths/MuxSearchAgent.o obj/paths/MuxSearchPolicy.o obj/paths/MuxToPath.o obj/paths/MuxWalkGraph.o obj/paths/NegativeGapValidator.o obj/paths/OffsetTracker.o obj/paths/PairedPair.o obj/paths/PathEmbedding.o obj/paths/PathWalk.o obj/paths/PileReadsOnPath.o obj/paths/ReadFillDatabase.o obj/paths/ReadFillRecord.o obj/paths/ReadsToPathsCoreX.o obj/paths/SimpleWalk.o obj/paths/SubsumptionList.o obj/paths/Unipath.o obj/paths/UnipathSeq.o obj/paths/UnipathSeqBuilder.o obj/paths/VerifyGapLengths.o obj/paths/Vote.o obj/paths/WalkPlot.o obj/random/Bernoulli.o obj/random/Random.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/Threads.o obj/system/TraceVal.o obj/system/Types.o obj/system/WorklistUtils.o obj/util/Kronos.o ar -qc obj/lib_GenomeToPaths_temp.a obj/Basevector.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalReadPart.o obj/HashSimple.o obj/MemberOf.o obj/ParseRange.o obj/ParseSet.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecString.o obj/charTranslations.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/paths/KmerPath.o obj/paths/KmerPathInterval.o obj/paths/simulation/GenomeToPaths.o obj/random/Random.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/util/Kronos.o /bin/rm -f obj/lib_MarkTrustedA2_temp.a /bin/rm -f obj/lib_MarkTrustedASub_temp.a ar -qc obj/lib_MarkTrustedA2_temp.a obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/Charvector.o obj/FastIfstream.o obj/FetchReads.o obj/Feudal.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/ParseRange.o obj/ParseSet.o obj/Qualvector.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecString.o obj/charTranslations.o obj/kmer_freq/KOccViewer.o obj/kmer_freq/MarkTrustedA2.o obj/kmer_freq/MarkTrustedUtils.o obj/kmer_freq/WriteKmerFrequencies.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/random/Random.o obj/solexa/ExtractSolexaReadsLib.o obj/solexa/FourBase.o obj/solexa/FourBase2.o obj/solexa/SolexaMetrics.o obj/solexa/SolexaPosition.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/HTMLUtils.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/system/Utils.o obj/util/Kronos.o ar -qc obj/lib_MarkTrustedASub_temp.a obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/Charvector.o obj/FastIfstream.o obj/FetchReads.o obj/Feudal.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/ParseRange.o obj/ParseSet.o obj/Qualvector.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecString.o obj/charTranslations.o obj/kmer_freq/KOccViewer.o obj/kmer_freq/MarkTrustedASub.o obj/kmer_freq/MarkTrustedUtils.o obj/kmer_freq/WriteKmerFrequencies.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/random/Random.o obj/solexa/ExtractSolexaReadsLib.o obj/solexa/FourBase.o obj/solexa/FourBase2.o obj/solexa/SolexaMetrics.o obj/solexa/SolexaPosition.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/HTMLUtils.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/system/Utils.o obj/util/Kronos.o ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function bin/checkLock bin/GenomeToPaths i686-pc-linux-gnu-g++ -ggdb3 -o bin/GenomeToPaths obj/paths/simulation/GenomeToPaths.o -L. -L. -Lobj -l_GenomeToPaths_temp /bin/rm obj/lib_UnibaseCopyNumberIdeal_temp.a ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./paths/RunAllPaths.cc: In function ‘int main(int, char**)’: ./paths/RunAllPaths.cc:69:5: note: variable tracking size limit exceeded with -fvar-tracking-assignments, retrying without /bin/rm obj/lib_GenomeToPaths_temp.a /bin/rm obj/lib_UnipathsFromTrustedKmers_temp.a /bin/rm obj/lib_UnipathEval_temp.a /bin/rm obj/lib_UnibasesFromTrustedKAdjs_temp.a /bin/rm obj/lib_Unipather_temp.a ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function bin/checkLock bin/MarkTrustedASub i686-pc-linux-gnu-g++ -ggdb3 -o bin/MarkTrustedASub obj/kmer_freq/MarkTrustedASub.o -L. -L. -Lobj -l_MarkTrustedASub_temp ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function bin/checkLock bin/MarkTrustedA2 i686-pc-linux-gnu-g++ -ggdb3 -o bin/MarkTrustedA2 obj/kmer_freq/MarkTrustedA2.o -L. -L. -Lobj -l_MarkTrustedA2_temp ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function bin/checkLock bin/Vote i686-pc-linux-gnu-g++ -ggdb3 -o bin/Vote obj/paths/Vote.o -L. -L. -Lobj -lpthread -l_Vote_temp ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function bin/checkLock bin/ViewHyper /bin/rm -f obj/lib_PrepareGenome_temp.a i686-pc-linux-gnu-g++ -ggdb3 -o bin/ViewHyper obj/paths/ViewHyper.o -L. -L. -Lobj -lpthread -l_ViewHyper_temp ar -qc obj/lib_PrepareGenome_temp.a obj/Basevector.o obj/Bitvector.o obj/Equiv.o obj/Feudal.o obj/FeudalFileWriter.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/HashSimple.o obj/MemberOf.o obj/ParseRange.o obj/ParseSet.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecString.o obj/charTranslations.o obj/graph/Digraph.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/paths/KmerBaseBroker.o obj/paths/KmerPath.o obj/paths/KmerPathInterval.o obj/paths/PathEmbedding.o obj/paths/simulation/PrepareGenome.o obj/random/Random.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/HTMLUtils.o obj/system/MemTracker.o obj/system/MiscUtil.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/system/Utils.o obj/util/Kronos.o ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function bin/checkLock bin/PrepareGenome i686-pc-linux-gnu-g++ -ggdb3 -o bin/PrepareGenome obj/paths/simulation/PrepareGenome.o -L. -L. -Lobj -l_PrepareGenome_temp /bin/rm obj/lib_Vote_temp.a /bin/rm obj/lib_PrepareGenome_temp.a /bin/rm obj/lib_MarkTrustedASub_temp.a /bin/rm obj/lib_MarkTrustedA2_temp.a ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function /bin/rm obj/lib_ViewHyper_temp.a ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function ./kmer_freq/MarkTrustedUtils.h: In function ‘void DoMarkTrustedB(const MARK_TRUSTED_B&, Bool, nbases_t) [with MARK_TRUSTED_B = MarkTrustedB >, Bool = unsigned char, nbases_t = int]’: ./kmer_freq/MarkTrustedUtils.h:455:42: warning: ‘koccViewer.std::auto_ptr::_M_ptr’ may be used uninitialized in this function /bin/rm -f obj/lib_MarkTrustedB2_temp.a ar -qc obj/lib_MarkTrustedB2_temp.a obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/Charvector.o obj/FastIfstream.o obj/FetchReads.o obj/Feudal.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/ParseRange.o obj/ParseSet.o obj/Qualvector.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecString.o obj/charTranslations.o obj/kmer_freq/KOccViewer.o obj/kmer_freq/MarkTrustedB2.o obj/kmer_freq/MarkTrustedUtils.o obj/kmer_freq/WriteKmerFrequencies.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/random/Random.o obj/solexa/ExtractSolexaReadsLib.o obj/solexa/FourBase.o obj/solexa/FourBase2.o obj/solexa/SolexaMetrics.o obj/solexa/SolexaPosition.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/HTMLUtils.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/system/Utils.o obj/util/Kronos.o bin/checkLock bin/MarkTrustedB2 i686-pc-linux-gnu-g++ -ggdb3 -o bin/MarkTrustedB2 obj/kmer_freq/MarkTrustedB2.o -L. -L. -Lobj -l_MarkTrustedB2_temp /bin/rm obj/lib_MarkTrustedB2_temp.a /bin/rm -f obj/lib_MarkTrustedB3_temp.a ar -qc obj/lib_MarkTrustedB3_temp.a obj/Basevector.o obj/BasevectorTools.o obj/Bitvector.o obj/Charvector.o obj/FastIfstream.o obj/FetchReads.o obj/Feudal.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/KmerRecord.o obj/KmerShape.o obj/MemberOf.o obj/ParseRange.o obj/ParseSet.o obj/Qualvector.o obj/SortKmers.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecString.o obj/charTranslations.o obj/kmer_freq/KOccViewer.o obj/kmer_freq/MarkTrustedB3.o obj/kmer_freq/MarkTrustedUtils.o obj/kmer_freq/WriteKmerFrequencies.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/random/Random.o obj/solexa/ExtractSolexaReadsLib.o obj/solexa/FourBase.o obj/solexa/FourBase2.o obj/solexa/SolexaMetrics.o obj/solexa/SolexaPosition.o obj/sort_kmers/SortKmersA.o obj/sort_kmers/SortKmersB.o obj/sort_kmers/SortKmersC.o obj/sort_kmers/SortKmersD.o obj/sort_kmers/SortKmersE.o obj/sort_kmers/SortKmersF.o obj/sort_kmers/SortKmersG.o obj/sort_kmers/SortKmersH.o obj/sort_kmers/SortKmersI.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/HTMLUtils.o obj/system/MemTracker.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/system/Utils.o obj/util/Kronos.o bin/checkLock bin/MarkTrustedB3 i686-pc-linux-gnu-g++ -ggdb3 -o bin/MarkTrustedB3 obj/kmer_freq/MarkTrustedB3.o -L. -L. -Lobj -l_MarkTrustedB3_temp /bin/rm obj/lib_MarkTrustedB3_temp.a /bin/rm -f obj/lib_RunAllPaths_temp.a ar -qc obj/lib_RunAllPaths_temp.a obj/Alignment.o obj/Basevector.o obj/Bitvector.o obj/BlockAlign.o obj/Charvector.o obj/CompressedSequence.o obj/Equiv.o obj/FastIfstream.o obj/FastaConverter.o obj/FastaFileset.o obj/FastaFilestream.o obj/FastaFilestreamPreview.o obj/FastaNameParser.o obj/FastaVerifier.o obj/FetchReads.o obj/Feudal.o obj/FeudalMimic.o obj/FeudalReadPart.o obj/IndexedAlignmentPlusVector.o obj/KmerShape.o obj/MemberOf.o obj/PackAlign.o obj/ParseRange.o obj/ParseSet.o obj/PrintAlignment.o obj/Qualvector.o obj/ReadPairing.o obj/ScoreAlignment.o obj/SeqInterval.o obj/String.o obj/TokenizeString.o obj/Vec.o obj/VecAlignmentPlus.o obj/VecString.o obj/charTranslations.o obj/graph/Digraph.o obj/lookup/FlowAlignSummary.o obj/lookup/LookAlign.o obj/lookup/LookAlignFinder.o obj/lookup/LookAlignSort.o obj/math/Arith.o obj/math/Functions.o obj/math/HoInterval.o obj/math/Matrix.o obj/math/Permutation.o obj/pairwise_aligners/Mutmer.o obj/paths/RunAllPaths.o obj/paths/RunAllPathsCommon.o obj/random/Random.o obj/random/Shuffle.o obj/solexa/FourBase.o obj/solexa/FourBase2.o obj/solexa/SolexaTools.o obj/system/Assert.o obj/system/Crash.o obj/system/Exit.o obj/system/HTMLUtils.o obj/system/MemTracker.o obj/system/MiscUtil.o obj/system/ParsedArgs.o obj/system/ProcBuf.o obj/system/RunTime.o obj/system/StdioWrapper.o obj/system/System.o obj/system/TraceVal.o obj/system/Types.o obj/system/Utils.o obj/util/BaitMap.o obj/util/Kronos.o bin/checkLock bin/RunAllPaths i686-pc-linux-gnu-g++ -ggdb3 -o bin/RunAllPaths obj/paths/RunAllPaths.o -L. -L. -Lobj -l_RunAllPaths_temp /bin/rm obj/lib_RunAllPaths_temp.a >>> Source compiled. >>> Test phase [none]: sci-biology/allpaths-2.0 >>> Install allpaths-2.0 into /var/tmp/portage/sci-biology/allpaths-2.0/image/ category sci-biology >>> Completed installing allpaths-2.0 into /var/tmp/portage/sci-biology/allpaths-2.0/image/ * Tinderbox QA Warning! ELF files in /usr/share TYPE FILE ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/UnipathsFromTrustedKmers ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/ShortQueryLookup ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/Fastb2Fasta ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/Qualb2Quala ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/ExtractSolexaReads ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/UnipathLocs ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/CorrectUnipaths ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/Vote ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/EvaluateCorrectedPairs ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/MarkTrustedB1 ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/MakeNormalEdgeGraph ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/UnipathEval ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/GenomeReadLocs ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/RemoveSuspiciousReads2 ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/MarkTrustedASub ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/MakeRcDb ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/GenomeToPaths ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/checkLock ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/EvaluateStrongKmers ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/UnibaseCopyNumberIdeal ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/TrustedFromQuals ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/LookAlignsToGaplessAligns ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/MarkTrusted4 ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/MarkTrustedA1 ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/ReadsToPaths ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/MarkGenomicKmersInReads ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/MarkTrustedA3 ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/RecoverUnipaths ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/RescueKmers ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/BuildUnipathLinkGraphs ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/MarkTrustedB2 ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/PanForGold ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/CleanHyper ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/FindGenomicKmers ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/GcBiasCurve2 ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/GetTruerReads ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/UnibasesFromTrustedKAdjs ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/EvalTrusted ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/SimulateReads ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/Singe ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/Unipather ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/FindUnipathLocs ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/MarkTrustedB3 ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/UniquifyAligns2 ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/LibraryStatsFromUnibases ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/QueryLookupTable ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/Shaver ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/RePath ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/PrepareAllPathsInput ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/GenomeSizeFromUnibases ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/MarkTrustedA2 ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/FindLinks0 ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/MarkTrusted5 ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/Quala2Qualb ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/EvalHyper ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/PrepareGenome ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/FindKmerFrequencies ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/UnipatherBig ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/RunAllPaths ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/BitvectorOp ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/LocalizeReads ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/ViewHyper ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/MarkTrusted2 ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/MakeLookupTable ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/MarkTrusted6 ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/PathsToLocs ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/FindLinks ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/DumpHyper ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/FastbStats ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/MakeDepend ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/TrueUnipathCoverage ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/StandardScaffold ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/ImperfectLookupTable ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/UnibaseCopyNumber ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/Fasta2Fastb ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/MarkTrusted1 ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/KAdjsFromUnibases ET_EXEC /var/tmp/portage/sci-biology/allpaths-2.0/image//usr/share/allpaths/bin/ProvisionalEdits * Tinderbox QA Warning (end)! ELF files in /usr/share strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment usr/share/allpaths/bin/UnipathsFromTrustedKmers usr/share/allpaths/bin/ShortQueryLookup usr/share/allpaths/bin/Fastb2Fasta usr/share/allpaths/bin/Qualb2Quala usr/share/allpaths/bin/ExtractSolexaReads usr/share/allpaths/bin/UnipathLocs usr/share/allpaths/bin/CorrectUnipaths usr/share/allpaths/bin/Vote usr/share/allpaths/bin/EvaluateCorrectedPairs usr/share/allpaths/bin/MarkTrustedB1 usr/share/allpaths/bin/MakeNormalEdgeGraph usr/share/allpaths/bin/UnipathEval usr/share/allpaths/bin/GenomeReadLocs usr/share/allpaths/bin/RemoveSuspiciousReads2 usr/share/allpaths/bin/MarkTrustedASub usr/share/allpaths/bin/MakeRcDb usr/share/allpaths/bin/GenomeToPaths usr/share/allpaths/bin/checkLock usr/share/allpaths/bin/EvaluateStrongKmers usr/share/allpaths/bin/UnibaseCopyNumberIdeal usr/share/allpaths/bin/TrustedFromQuals usr/share/allpaths/bin/LookAlignsToGaplessAligns usr/share/allpaths/bin/MarkTrusted4 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usr/share/allpaths/bin/KAdjsFromUnibases usr/share/allpaths/bin/ProvisionalEdits  * QA Notice: Files built without respecting LDFLAGS have been detected * Please include the following list of files in your report: * /usr/share/allpaths/bin/UnipathsFromTrustedKmers * /usr/share/allpaths/bin/ShortQueryLookup * /usr/share/allpaths/bin/Fastb2Fasta * /usr/share/allpaths/bin/Qualb2Quala * /usr/share/allpaths/bin/ExtractSolexaReads * /usr/share/allpaths/bin/UnipathLocs * /usr/share/allpaths/bin/CorrectUnipaths * /usr/share/allpaths/bin/Vote * /usr/share/allpaths/bin/EvaluateCorrectedPairs * /usr/share/allpaths/bin/MarkTrustedB1 * /usr/share/allpaths/bin/MakeNormalEdgeGraph * /usr/share/allpaths/bin/UnipathEval * /usr/share/allpaths/bin/GenomeReadLocs * /usr/share/allpaths/bin/RemoveSuspiciousReads2 * /usr/share/allpaths/bin/MarkTrustedASub * /usr/share/allpaths/bin/MakeRcDb * /usr/share/allpaths/bin/GenomeToPaths * /usr/share/allpaths/bin/checkLock * /usr/share/allpaths/bin/EvaluateStrongKmers * /usr/share/allpaths/bin/UnibaseCopyNumberIdeal * /usr/share/allpaths/bin/TrustedFromQuals * /usr/share/allpaths/bin/LookAlignsToGaplessAligns * /usr/share/allpaths/bin/MarkTrusted4 * /usr/share/allpaths/bin/MarkTrustedA1 * /usr/share/allpaths/bin/ReadsToPaths * /usr/share/allpaths/bin/MarkGenomicKmersInReads * /usr/share/allpaths/bin/MarkTrustedA3 * /usr/share/allpaths/bin/RecoverUnipaths * /usr/share/allpaths/bin/RescueKmers * /usr/share/allpaths/bin/BuildUnipathLinkGraphs * /usr/share/allpaths/bin/MarkTrustedB2 * /usr/share/allpaths/bin/PanForGold * /usr/share/allpaths/bin/CleanHyper * /usr/share/allpaths/bin/FindGenomicKmers * /usr/share/allpaths/bin/GcBiasCurve2 * /usr/share/allpaths/bin/GetTruerReads * /usr/share/allpaths/bin/UnibasesFromTrustedKAdjs * /usr/share/allpaths/bin/EvalTrusted * /usr/share/allpaths/bin/SimulateReads * /usr/share/allpaths/bin/Singe * /usr/share/allpaths/bin/Unipather * /usr/share/allpaths/bin/FindUnipathLocs * /usr/share/allpaths/bin/MarkTrustedB3 * /usr/share/allpaths/bin/UniquifyAligns2 * /usr/share/allpaths/bin/LibraryStatsFromUnibases * /usr/share/allpaths/bin/QueryLookupTable * /usr/share/allpaths/bin/Shaver * /usr/share/allpaths/bin/RePath * /usr/share/allpaths/bin/PrepareAllPathsInput * /usr/share/allpaths/bin/GenomeSizeFromUnibases * /usr/share/allpaths/bin/MarkTrustedA2 * /usr/share/allpaths/bin/FindLinks0 * /usr/share/allpaths/bin/MarkTrusted5 * /usr/share/allpaths/bin/Quala2Qualb * /usr/share/allpaths/bin/EvalHyper * /usr/share/allpaths/bin/PrepareGenome * /usr/share/allpaths/bin/FindKmerFrequencies * /usr/share/allpaths/bin/UnipatherBig * /usr/share/allpaths/bin/RunAllPaths * /usr/share/allpaths/bin/BitvectorOp * /usr/share/allpaths/bin/LocalizeReads * /usr/share/allpaths/bin/ViewHyper * /usr/share/allpaths/bin/MarkTrusted2 * /usr/share/allpaths/bin/MakeLookupTable * /usr/share/allpaths/bin/MarkTrusted6 * /usr/share/allpaths/bin/PathsToLocs * /usr/share/allpaths/bin/FindLinks * /usr/share/allpaths/bin/DumpHyper * /usr/share/allpaths/bin/FastbStats * /usr/share/allpaths/bin/MakeDepend * /usr/share/allpaths/bin/TrueUnipathCoverage * /usr/share/allpaths/bin/StandardScaffold * /usr/share/allpaths/bin/ImperfectLookupTable * /usr/share/allpaths/bin/UnibaseCopyNumber * /usr/share/allpaths/bin/Fasta2Fastb * /usr/share/allpaths/bin/MarkTrusted1 * /usr/share/allpaths/bin/KAdjsFromUnibases * /usr/share/allpaths/bin/ProvisionalEdits  * Gentoo contact information ... herds: sci-biology maintainers: weaver@gentoo.org