Build log

clustalw-mpi-0.13:20100830-062041.log (text/plain), 5.65 KB, created by Diego Elio Pettenò (RETIRED) on 2010-08-30 11:29:35 UTC

 * CPV:  sci-biology/clustalw-mpi-0.13
 * REPO: gentoo
 * USE:  elibc_glibc kernel_linux test userland_GNU x86
>>> Unpacking source...
>>> Unpacking clustalw-mpi-0.13.tar.gz to /var/tmp/portage/sci-biology/clustalw-mpi-0.13/work
>>> Source unpacked in /var/tmp/portage/sci-biology/clustalw-mpi-0.13/work
>>> Compiling source in /var/tmp/portage/sci-biology/clustalw-mpi-0.13/work/clustalw-mpi-0.13 ...
make -j14 
mpicc  -c -O2 -pipe clustalw-mpi.c
mpicc  -c -O2 -pipe interface.c
mpicc  -c -O2 -pipe sequence.c
mpicc  -c -O2 -pipe showpair.c
mpicc  -c -O2 -pipe malign.c
mpicc  -c -O2 -pipe malign_mpi_progressive.c
mpicc  -c -O2 -pipe malign_mpi_pdiff.c
mpicc  -c -O2 -pipe util.c
mpicc  -DSERIAL_NJTREE -c -O2 -pipe trees.c
mpicc  -c -O2 -pipe gcgcheck.c
mpicc  -c -O2 -pipe prfalign_mpi_pdiff.c
mpicc  -c -O2 -pipe prfalign_mpi_progressive.c
mpicc  -DDYNAMIC_SCHEDULING_PAIRALIGN  -c -O2 -pipe pairalign_new.c
mpicc  -c -O2 -pipe calcgapcoeff.c
util.c: In function ‘do_system’:
util.c:244:9: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result
util.c: In function ‘getint’:
util.c:221:15: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
util.c: In function ‘getreal’:
util.c:193:15: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
util.c: In function ‘getstr’:
util.c:179:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
mpicc  -c -O2 -pipe calcprf1.c
sequence.c: In function ‘get_clustal_seq’:
sequence.c:158:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
sequence.c:163:30: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
sequence.c: In function ‘get_msf_seq’:
sequence.c:97:30: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
sequence.c: In function ‘get_seq’:
sequence.c:724:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
sequence.c:752:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
sequence.c:760:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
sequence.c:786:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
sequence.c:820:11: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
sequence.c:824:11: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
sequence.c: In function ‘get_embl_ss’:
sequence.c:401:12: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
sequence.c:406:12: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
sequence.c:425:12: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
sequence.c:430:12: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
sequence.c: In function ‘get_rsf_ss’:
sequence.c:496:12: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
sequence.c:501:12: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
mpicc  -c -O2 -pipe calcprf2.c
interface.c: In function ‘profile_align’:
interface.c:2811:8: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
interface.c:2840:8: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
interface.c: In function ‘create_parameter_output’:
interface.c:3871:8: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
mpicc  -c -O2 -pipe calctree.c
interface.c: In function ‘get_tree’:
interface.c:2667:12: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
interface.c: In function ‘new_sequence_align’:
interface.c:2431:8: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
interface.c: In function ‘open_output_file’:
interface.c:2178:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
interface.c:2189:8: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result
mpicc  -c -O2 -pipe readmat.c
mpicc  -c -O2 -pipe alnscore.c
mpicc  -c -O2 -pipe random.c
calctree.c: In function ‘create_tree’:
calctree.c:362:14: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result
mpicc  -DDYNAMIC_SCHEDULING_PAIRALIGN  -c -O2 -pipe parallel_compare.c
mpicc  -c -O2 -pipe prfalign.c
mpicc  -c -O2 -pipe stupid.c
mpicc  -o clustalw-mpi clustalw-mpi.o interface.o sequence.o showpair.o malign.o malign_mpi_progressive.o malign_mpi_pdiff.o util.o trees.o gcgcheck.o prfalign_mpi_pdiff.o prfalign_mpi_progressive.o pairalign_new.o calcgapcoeff.o calcprf1.o calcprf2.o calctree.o readmat.o alnscore.o random.o parallel_compare.o prfalign.o stupid.o -lm -O2 -pipe 
>>> Source compiled.
>>> Test phase [none]: sci-biology/clustalw-mpi-0.13

>>> Install clustalw-mpi-0.13 into /var/tmp/portage/sci-biology/clustalw-mpi-0.13/image/ category sci-biology
>>> Completed installing clustalw-mpi-0.13 into /var/tmp/portage/sci-biology/clustalw-mpi-0.13/image/

strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment
   usr/bin/clustalw-mpi

 * QA Notice: Files built without respecting LDFLAGS have been detected
 *  Please include the following list of files in your report:
 * /usr/bin/clustalw-mpi

 * Gentoo contact information ...
herds:
    sci-biology
maintainers: