* CPV:  sci-libs/cctbx-2010.03.29.2334-r1
 * REPO: gentoo
 * USE:  elibc_glibc kernel_linux minimal openmp test userland_GNU x86
>>> Unpacking source...
>>> Unpacking cctbx-2010.03.29.2334.tar.gz to /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work
>>> Source unpacked in /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work
>>> Preparing source in /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work ...
 * Applying 2010.03.29.2334-tst_server.py.patch ...
  [ ok ]
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work ...
 * configuring with  /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/libtbx/configure.py --compiler=gcc --enable-openmp-if-possible=True  --scan-boost --current_working_directory=/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_build --build=release fftw3tbx rstbx smtbx mmtbx clipper fable
Python: 2.7 "/usr/bin/python2.7"
Compiler: gcc
Build mode: release
Warning level: 0
Static libraries: False
Static exe: False
Scan Boost headers: True
Write full flex_fwd.h files: False
Build Boost.Python extensions: True
Define BOOST_PYTHON_NO_PY_SIGNATURES: False
Define BOOST_PYTHON_BOOL_INT_STRICT: True
Boost threads enabled: False
Enable OpenMP if possible: True
Use environment flags: False
command_version_suffix: None
Top-down list of all modules involved:
  fftw3tbx         /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/fftw3tbx
  rstbx            /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/rstbx
  smtbx            /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/smtbx
  mmtbx            /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/mmtbx
  iotbx            /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx
  PyCifRW          /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/PyCifRW
  ccp4io+adaptbx   /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io
                   /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io_adaptbx
  clipper+adaptbx  /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper
                   /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper_adaptbx
  cctbx            /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx
  scitbx           /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx
  omptbx           /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/omptbx
  chiltbx          /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/chiltbx
  fable            /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/fable
  boost+adaptbx    /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost
                   /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost_adaptbx
  libtbx           /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/libtbx
Creating files in build directory:
  "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_build"
    dispatcher_include_template.sh
    dispatcher_head.sh
    setpaths.sh
    setpaths.csh
    setpaths_all.sh
    setpaths_all.csh
    setpaths_debug.sh
    unsetpaths.sh
    setpaths_debug.csh
    unsetpaths.csh
    SConstruct
    Makefile
    run_tests.csh
Processing: "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/libtbx/command_line"
Processing: "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost_adaptbx/command_line"
Processing: "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/fable/command_line"
Processing: "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/command_line"
Processing: "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/command_line"
Processing: "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/PyCifRW/command_line"
Processing: "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/command_line"
Processing: "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/mmtbx/command_line"
Processing: "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/smtbx/command_line"
Processing: "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/rstbx/command_line"
Processing: "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/fftw3tbx/command_line"
Processing: "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/libtbx/libtbx_refresh.py"
Processing: "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/libtbx_refresh.py"
  Generating C++ header files in:
    "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_build/include/scitbx/array_family"
  Generating C++ files in:
    "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_build/include/scitbx/array_family/boost_python"
Processing: "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/libtbx_refresh.py"
  Generating C++ files in:
    "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_build/cctbx/eltbx"
  Generating C++ files in:
    "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_build/include/cctbx/boost_python"
Processing: "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/smtbx/libtbx_refresh.py"
  Generating C++ files in:
    "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_build/include/smtbx/boost_python"
Processing: "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/fftw3tbx/libtbx_refresh.py"
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work ...
 * compiling with libtbx.scons -j 14
scons: Reading SConscript files ...
libtbx.scons: 32-bit build detected: -ftrapv not used
libtbx.scons: OpenMP is available.
scons: done reading SConscript files.
scons: Building targets ...
g++ -o boost/libs/python/src/converter/arg_to_python_base.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost/libs/python/src/converter/arg_to_python_base.cpp
g++ -o boost/libs/python/src/converter/builtin_converters.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost/libs/python/src/converter/builtin_converters.cpp
g++ -o boost/libs/python/src/converter/from_python.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost/libs/python/src/converter/from_python.cpp
g++ -o boost/libs/python/src/converter/registry.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost/libs/python/src/converter/registry.cpp
g++ -o boost/libs/python/src/converter/type_id.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost/libs/python/src/converter/type_id.cpp
g++ -o boost/libs/python/src/dict.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost/libs/python/src/dict.cpp
g++ -o boost/libs/python/src/errors.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost/libs/python/src/errors.cpp
g++ -o boost/libs/python/src/exec.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost/libs/python/src/exec.cpp
g++ -o boost/libs/python/src/import.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost/libs/python/src/import.cpp
g++ -o boost/libs/python/src/list.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost/libs/python/src/list.cpp
g++ -o boost/libs/python/src/long.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost/libs/python/src/long.cpp
g++ -o boost/libs/python/src/module.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost/libs/python/src/module.cpp
g++ -o boost/libs/python/src/numeric.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost/libs/python/src/numeric.cpp
g++ -o boost/libs/python/src/object/class.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost/libs/python/src/object/class.cpp
g++ -o boost/libs/python/src/object/enum.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost/libs/python/src/object/enum.cpp
g++ -o boost/libs/python/src/object/function.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost/libs/python/src/object/function.cpp
g++ -o boost/libs/python/src/object/function_doc_signature.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost/libs/python/src/object/function_doc_signature.cpp
g++ -o boost/libs/python/src/object/inheritance.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost/libs/python/src/object/inheritance.cpp
g++ -o boost/libs/python/src/object/iterator.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost/libs/python/src/object/iterator.cpp
g++ -o boost/libs/python/src/object/life_support.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost/libs/python/src/object/life_support.cpp
g++ -o boost/libs/python/src/object/pickle_support.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost/libs/python/src/object/pickle_support.cpp
g++ -o boost/libs/python/src/object/stl_iterator.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost/libs/python/src/object/stl_iterator.cpp
g++ -o boost/libs/python/src/object_operators.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost/libs/python/src/object_operators.cpp
g++ -o boost/libs/python/src/object_protocol.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost/libs/python/src/object_protocol.cpp
g++ -o boost/libs/python/src/slice.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost/libs/python/src/slice.cpp
g++ -o boost/libs/python/src/str.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost/libs/python/src/str.cpp
g++ -o boost/libs/python/src/tuple.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost/libs/python/src/tuple.cpp
g++ -o boost/libs/python/src/wrapper.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost/libs/python/src/wrapper.cpp
g++ -o boost_adaptbx/hybrid_times_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost_adaptbx/hybrid_times_ext.cpp
g++ -o boost_adaptbx/meta_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost_adaptbx/meta_ext.cpp
g++ -o boost_adaptbx/optional_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost_adaptbx/optional_ext.cpp
g++ -o boost_adaptbx/rational_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost_adaptbx/rational_ext.cpp
g++ -o boost_adaptbx/std_pair_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost_adaptbx/std_pair_ext.cpp
g++ -o boost_adaptbx/tests/python_streambuf_test_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost_adaptbx/tests/python_streambuf_test_ext.cpp
g++ -o boost_adaptbx/tests/tst_optional_copy.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost_adaptbx/tests/tst_optional_copy.cpp
g++ -o boost_adaptbx/tuple_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost_adaptbx/tuple_ext.cpp
gcc -o ccp4io/lib/src/ccp4_array.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I. -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src/ccp4_array.c
gcc -o ccp4io/lib/src/ccp4_parser.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I. -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src/ccp4_parser.c
gcc -o ccp4io/lib/src/ccp4_unitcell.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I. -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src/ccp4_unitcell.c
gcc -o ccp4io/lib/src/cmap_accessor.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I. -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src/cmap_accessor.c
gcc -o ccp4io/lib/src/cmap_close.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I. -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src/cmap_close.c
gcc -o ccp4io/lib/src/cmap_data.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I. -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src/cmap_data.c
gcc -o ccp4io/lib/src/cmap_header.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I. -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src/cmap_header.c
gcc -o ccp4io/lib/src/cmap_labels.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I. -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src/cmap_labels.c
gcc -o ccp4io/lib/src/cmap_open.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I. -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src/cmap_open.c
gcc -o ccp4io/lib/src/cmap_skew.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I. -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src/cmap_skew.c
gcc -o ccp4io/lib/src/cmap_stats.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I. -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src/cmap_stats.c
gcc -o ccp4io/lib/src/cmap_symop.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I. -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src/cmap_symop.c
gcc -o ccp4io/lib/src/cmtzlib.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I. -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src/cmtzlib.c
gcc -o ccp4io/lib/src/cvecmat.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I. -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src/cvecmat.c
gcc -o ccp4io/lib/src/library_err.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I. -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src/library_err.c
g++ -o boost_adaptbx/tests/tst_optional_copy -fopenmp boost_adaptbx/tests/tst_optional_copy.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib
gcc -o ccp4io/lib/src/library_file.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I. -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src/library_file.c
gcc -o ccp4io/lib/src/library_utils.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I. -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src/library_utils.c
gcc -o ccp4io_adaptbx/csymlib.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I. -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src ccp4io_adaptbx/csymlib.c
g++ -o cctbx/adp_restraints/adp_restraints_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/adp_restraints/adp_restraints_ext.cpp
g++ -o cctbx/adp_restraints/adp_similarity.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/adp_restraints/adp_similarity.cpp
g++ -o cctbx/adp_restraints/adp_similarity_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/adp_restraints/adp_similarity_bpl.cpp
g++ -o cctbx/adp_restraints/isotropic_adp.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/adp_restraints/isotropic_adp.cpp
g++ -o cctbx/adp_restraints/isotropic_adp_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/adp_restraints/isotropic_adp_bpl.cpp
g++ -o cctbx/adp_restraints/rigid_bond.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/adp_restraints/rigid_bond.cpp
g++ -o cctbx/adp_restraints/rigid_bond_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/adp_restraints/rigid_bond_bpl.cpp
g++ -o cctbx/adptbx/boost_python/adptbx_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/adptbx/boost_python/adptbx_ext.cpp
g++ -o cctbx/array_family/boost_python/flex_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/array_family/boost_python/flex_ext.cpp
g++ -o cctbx/array_family/boost_python/flex_hendrickson_lattman.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/array_family/boost_python/flex_hendrickson_lattman.cpp
g++ -o cctbx/array_family/boost_python/flex_miller_index.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/array_family/boost_python/flex_miller_index.cpp
g++ -o cctbx/array_family/boost_python/flex_xray_scatterer.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/array_family/boost_python/flex_xray_scatterer.cpp
g++ -o cctbx/boost_python/emma_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/boost_python/emma_ext.cpp
g++ -o cctbx/boost_python/orientation_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/boost_python/orientation_ext.cpp
g++ -o cctbx/boost_python/statistics_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/boost_python/statistics_ext.cpp
g++ -o cctbx/crystal/asu_clusters_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/crystal/asu_clusters_bpl.cpp
g++ -o cctbx/crystal/close_packing_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/crystal/close_packing_bpl.cpp
g++ -o cctbx/crystal/coordination_sequences_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/crystal/coordination_sequences_bpl.cpp
g++ -o cctbx/crystal/crystal_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/crystal/crystal_ext.cpp
g++ -o cctbx/crystal/direct_space_asu_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/crystal/direct_space_asu_bpl.cpp
g++ -o cctbx/crystal/incremental_pairs_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/crystal/incremental_pairs_bpl.cpp
g++ -o cctbx/crystal/neighbors_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/crystal/neighbors_bpl.cpp
g++ -o cctbx/crystal/pair_tables_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/crystal/pair_tables_bpl.cpp
g++ -o cctbx/crystal/site_cluster_analysis_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/crystal/site_cluster_analysis_bpl.cpp
g++ -o cctbx/crystal/symmetry_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/crystal/symmetry_bpl.cpp
g++ -o cctbx/dmtbx/boost_python/dmtbx_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/dmtbx/boost_python/dmtbx_ext.cpp
g++ -o cctbx/dmtbx/boost_python/triplet_generator.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/dmtbx/boost_python/triplet_generator.cpp
g++ -o cctbx/dmtbx/boost_python/triplet_phase_relation.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/dmtbx/boost_python/triplet_phase_relation.cpp
g++ -o cctbx/eltbx/basic.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/eltbx/basic.cpp
g++ -o cctbx/eltbx/boost_python/chemical_elements_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/eltbx/boost_python/chemical_elements_ext.cpp
g++ -o cctbx/eltbx/boost_python/covalent_radii_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/eltbx/boost_python/covalent_radii_ext.cpp
g++ -o cctbx/eltbx/boost_python/fp_fdp_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/eltbx/boost_python/fp_fdp_ext.cpp
g++ -o cctbx/eltbx/boost_python/henke_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/eltbx/boost_python/henke_ext.cpp
g++ -o cctbx/eltbx/boost_python/icsd_radii_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/eltbx/boost_python/icsd_radii_ext.cpp
g++ -o cctbx/eltbx/boost_python/neutron_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/eltbx/boost_python/neutron_ext.cpp
g++ -o cctbx/eltbx/boost_python/sasaki_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/eltbx/boost_python/sasaki_ext.cpp
g++ -o cctbx/eltbx/boost_python/tiny_pse_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/eltbx/boost_python/tiny_pse_ext.cpp
g++ -o cctbx/eltbx/boost_python/wavelengths_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/eltbx/boost_python/wavelengths_ext.cpp
g++ -o cctbx/eltbx/boost_python/xray_scattering_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/eltbx/boost_python/xray_scattering_ext.cpp
g++ -o cctbx/eltbx/covalent_radii.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/eltbx/covalent_radii.cpp
g++ -o cctbx/eltbx/fp_fdp.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/eltbx/fp_fdp.cpp
g++ -o cctbx/eltbx/henke.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost cctbx/eltbx/henke.cpp
g++ -o cctbx/eltbx/henke_tables_01_12.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost cctbx/eltbx/henke_tables_01_12.cpp
g++ -o cctbx/eltbx/henke_tables_13_24.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost cctbx/eltbx/henke_tables_13_24.cpp
g++ -o cctbx/eltbx/henke_tables_25_36.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost cctbx/eltbx/henke_tables_25_36.cpp
g++ -o cctbx/eltbx/henke_tables_37_48.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost cctbx/eltbx/henke_tables_37_48.cpp
g++ -o cctbx/eltbx/henke_tables_49_60.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost cctbx/eltbx/henke_tables_49_60.cpp
g++ -o cctbx/eltbx/henke_tables_61_72.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost cctbx/eltbx/henke_tables_61_72.cpp
g++ -o cctbx/eltbx/henke_tables_73_84.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost cctbx/eltbx/henke_tables_73_84.cpp
g++ -o cctbx/eltbx/henke_tables_85_92.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost cctbx/eltbx/henke_tables_85_92.cpp
g++ -o cctbx/eltbx/icsd_radii.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/eltbx/icsd_radii.cpp
g++ -o cctbx/eltbx/neutron.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/eltbx/neutron.cpp
g++ -o cctbx/eltbx/sasaki.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost cctbx/eltbx/sasaki.cpp
g++ -o cctbx/eltbx/sasaki_tables_01_12.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost cctbx/eltbx/sasaki_tables_01_12.cpp
g++ -o cctbx/eltbx/sasaki_tables_13_24.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost cctbx/eltbx/sasaki_tables_13_24.cpp
g++ -o cctbx/eltbx/sasaki_tables_25_36.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost cctbx/eltbx/sasaki_tables_25_36.cpp
g++ -o cctbx/eltbx/sasaki_tables_37_48.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost cctbx/eltbx/sasaki_tables_37_48.cpp
g++ -o cctbx/eltbx/sasaki_tables_49_60.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost cctbx/eltbx/sasaki_tables_49_60.cpp
g++ -o cctbx/eltbx/sasaki_tables_61_72.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost cctbx/eltbx/sasaki_tables_61_72.cpp
g++ -o cctbx/eltbx/sasaki_tables_73_82.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost cctbx/eltbx/sasaki_tables_73_82.cpp
g++ -o cctbx/eltbx/tiny_pse.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/eltbx/tiny_pse.cpp
g++ -o cctbx/eltbx/wavelengths.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/eltbx/wavelengths.cpp
g++ -o cctbx/eltbx/xray_scattering/it1992.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/eltbx/xray_scattering/it1992.cpp
g++ -o cctbx/eltbx/xray_scattering/n_gaussian.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/eltbx/xray_scattering/n_gaussian.cpp
g++ -o cctbx/eltbx/xray_scattering/n_gaussian_raw.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/eltbx/xray_scattering/n_gaussian_raw.cpp
g++ -o cctbx/eltbx/xray_scattering/wk1995.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/eltbx/xray_scattering/wk1995.cpp
g++ -o cctbx/examples/convert_ccp4_symop_lib.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Icctbx/examples -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/examples -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/examples/convert_ccp4_symop_lib.cpp
g++ -o cctbx/examples/find_distances.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Icctbx/examples -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/examples -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/examples/find_distances.cpp
g++ -o cctbx/examples/getting_started.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Icctbx/examples -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/examples -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/examples/getting_started.cpp
g++ -o cctbx/examples/lattice_symmetry.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Icctbx/examples -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/examples -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/examples/lattice_symmetry.cpp
g++ -o cctbx/examples/sym_equiv_sites.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Icctbx/examples -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/examples -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/examples/sym_equiv_sites.cpp
g++ -o cctbx/examples/sys_abs_equiv_space_groups.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Icctbx/examples -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/examples -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/examples/sys_abs_equiv_space_groups.cpp
g++ -o cctbx/geometry_restraints/angle_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/geometry_restraints/angle_bpl.cpp
g++ -o cctbx/geometry_restraints/bond_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/geometry_restraints/bond_bpl.cpp
g++ -o cctbx/geometry_restraints/bond_similarity_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/geometry_restraints/bond_similarity_bpl.cpp
g++ -o cctbx/geometry_restraints/bond_sorted_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/geometry_restraints/bond_sorted_bpl.cpp
g++ -o cctbx/geometry_restraints/chirality_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/geometry_restraints/chirality_bpl.cpp
g++ -o cctbx/geometry_restraints/dihedral_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/geometry_restraints/dihedral_bpl.cpp
g++ -o cctbx/geometry_restraints/geometry_restraints_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/geometry_restraints/geometry_restraints_ext.cpp
g++ -o cctbx/geometry_restraints/motif_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/geometry_restraints/motif_bpl.cpp
g++ -o cctbx/geometry_restraints/nonbonded_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/geometry_restraints/nonbonded_bpl.cpp
g++ -o cctbx/geometry_restraints/nonbonded_sorted_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/geometry_restraints/nonbonded_sorted_bpl.cpp
g++ -o cctbx/geometry_restraints/planarity_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/geometry_restraints/planarity_bpl.cpp
g++ -o cctbx/maptbx/boost_python/basic_map.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/maptbx/boost_python/basic_map.cpp
g++ -o cctbx/maptbx/boost_python/coordinate_transformers.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/maptbx/boost_python/coordinate_transformers.cpp
g++ -o cctbx/maptbx/boost_python/grid_indices_around_sites.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/maptbx/boost_python/grid_indices_around_sites.cpp
g++ -o cctbx/maptbx/boost_python/grid_tags.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/maptbx/boost_python/grid_tags.cpp
g++ -o cctbx/maptbx/boost_python/gridding.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/maptbx/boost_python/gridding.cpp
g++ -o cctbx/maptbx/boost_python/mapper.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/maptbx/boost_python/mapper.cpp
g++ -o cctbx/maptbx/boost_python/maptbx_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/maptbx/boost_python/maptbx_ext.cpp
g++ -o cctbx/maptbx/boost_python/misc.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/maptbx/boost_python/misc.cpp
g++ -o cctbx/maptbx/boost_python/peak_search.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/maptbx/boost_python/peak_search.cpp
g++ -o cctbx/maptbx/boost_python/pymol_interface.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/maptbx/boost_python/pymol_interface.cpp
g++ -o cctbx/maptbx/boost_python/real_space_refinement.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/maptbx/boost_python/real_space_refinement.cpp
g++ -o cctbx/maptbx/boost_python/statistics.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/maptbx/boost_python/statistics.cpp
g++ -o cctbx/maptbx/boost_python/structure_factors.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/maptbx/boost_python/structure_factors.cpp
g++ -o cctbx/masks/boost_python/masks_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/masks/boost_python/masks_ext.cpp
g++ -o cctbx/math/boost_python/math_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/math/boost_python/math_ext.cpp
g++ -o cctbx/math/time_trigonometry.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/math/time_trigonometry.cpp
g++ -o cctbx/miller/asu.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/miller/asu.cpp
g++ -o cctbx/miller/bins.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/miller/bins.cpp
g++ -o cctbx/miller/index_generator.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/miller/index_generator.cpp
g++ -o cctbx/miller/index_span.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/miller/index_span.cpp
g++ -o cctbx/miller/match_bijvoet_mates.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/miller/match_bijvoet_mates.cpp
g++ -o cctbx/miller/match_indices.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/miller/match_indices.cpp
g++ -o cctbx/miller/sym_equiv.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/miller/sym_equiv.cpp
g++ -o cctbx/sgtbx/bricks.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/bricks.cpp
g++ -o cctbx/sgtbx/change_of_basis_op.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/change_of_basis_op.cpp
g++ -o cctbx/sgtbx/find_affine.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/find_affine.cpp
g++ -o cctbx/sgtbx/group_codes.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/group_codes.cpp
g++ -o cctbx/sgtbx/hall_in.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/hall_in.cpp
g++ -o cctbx/sgtbx/lattice_tr.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/lattice_tr.cpp
g++ -o cctbx/sgtbx/lattice_symmetry.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/lattice_symmetry.cpp
g++ -o cctbx/sgtbx/miller.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/miller.cpp
g++ -o cctbx/sgtbx/reciprocal_space_asu.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/reciprocal_space_asu.cpp
g++ -o cctbx/sgtbx/reciprocal_space_ref_asu.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/reciprocal_space_ref_asu.cpp
g++ -o cctbx/sgtbx/rot_mx.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/rot_mx.cpp
g++ -o cctbx/sgtbx/rot_mx_info.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/rot_mx_info.cpp
g++ -o cctbx/sgtbx/row_echelon_solve.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/row_echelon_solve.cpp
g++ -o cctbx/sgtbx/rt_mx.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/rt_mx.cpp
g++ -o cctbx/sgtbx/select_generators.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/select_generators.cpp
g++ -o cctbx/sgtbx/seminvariant.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/seminvariant.cpp
g++ -o cctbx/sgtbx/site_symmetry.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/site_symmetry.cpp
g++ -o cctbx/sgtbx/space_group.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/space_group.cpp
g++ -o cctbx/sgtbx/space_group_type.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/space_group_type.cpp
g++ -o cctbx/sgtbx/symbols.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/symbols.cpp
g++ -o cctbx/sgtbx/tensor_rank_2.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/tensor_rank_2.cpp
g++ -o cctbx/sgtbx/tr_group.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/tr_group.cpp
g++ -o cctbx/sgtbx/tr_vec.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/tr_vec.cpp
g++ -o cctbx/sgtbx/utils.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/utils.cpp
g++ -o cctbx/sgtbx/wyckoff.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/wyckoff.cpp
g++ -o cctbx/sgtbx/reference_settings/hall_symbol_table.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/reference_settings/hall_symbol_table.cpp
g++ -o cctbx/sgtbx/reference_settings/matrix_group_code_table.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/reference_settings/matrix_group_code_table.cpp
g++ -o cctbx/sgtbx/reference_settings/normalizer.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/reference_settings/normalizer.cpp
g++ -o cctbx/sgtbx/reference_settings/wyckoff.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/reference_settings/wyckoff.cpp
g++ -o cctbx/uctbx/uctbx.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/uctbx/uctbx.cpp
g++ -o cctbx/uctbx/spoil_optimization.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/uctbx/spoil_optimization.cpp
g++ -o cctbx/uctbx/crystal_orientation.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/uctbx/crystal_orientation.cpp
g++ -o cctbx/miller/boost_python/amplitude_normalisation.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/miller/boost_python/amplitude_normalisation.cpp
g++ -o cctbx/miller/boost_python/asu.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/miller/boost_python/asu.cpp
g++ -o cctbx/miller/boost_python/bins.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/miller/boost_python/bins.cpp
g++ -o cctbx/miller/boost_python/change_basis.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/miller/boost_python/change_basis.cpp
g++ -o cctbx/miller/boost_python/expand_to_p1.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/miller/boost_python/expand_to_p1.cpp
g++ -o cctbx/miller/boost_python/f_calc_map.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/miller/boost_python/f_calc_map.cpp
g++ -o cctbx/miller/boost_python/index_generator.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/miller/boost_python/index_generator.cpp
g++ -o cctbx/miller/boost_python/index_span.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/miller/boost_python/index_span.cpp
g++ -o cctbx/miller/boost_python/lookup_utils.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/miller/boost_python/lookup_utils.cpp
g++ -o cctbx/miller/boost_python/match_bijvoet_mates.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/miller/boost_python/match_bijvoet_mates.cpp
g++ -o cctbx/miller/boost_python/match_indices.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/miller/boost_python/match_indices.cpp
g++ -o lib/libcctbx.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp cctbx/eltbx/basic.o cctbx/eltbx/xray_scattering/it1992.o cctbx/eltbx/xray_scattering/wk1995.o cctbx/eltbx/xray_scattering/n_gaussian_raw.o cctbx/eltbx/xray_scattering/n_gaussian.o cctbx/eltbx/fp_fdp.o cctbx/eltbx/henke.o cctbx/eltbx/henke_tables_01_12.o cctbx/eltbx/henke_tables_13_24.o cctbx/eltbx/henke_tables_25_36.o cctbx/eltbx/henke_tables_37_48.o cctbx/eltbx/henke_tables_49_60.o cctbx/eltbx/henke_tables_61_72.o cctbx/eltbx/henke_tables_73_84.o cctbx/eltbx/henke_tables_85_92.o cctbx/eltbx/icsd_radii.o cctbx/eltbx/covalent_radii.o cctbx/eltbx/neutron.o cctbx/eltbx/sasaki.o cctbx/eltbx/sasaki_tables_01_12.o cctbx/eltbx/sasaki_tables_13_24.o cctbx/eltbx/sasaki_tables_25_36.o cctbx/eltbx/sasaki_tables_37_48.o cctbx/eltbx/sasaki_tables_49_60.o cctbx/eltbx/sasaki_tables_61_72.o cctbx/eltbx/sasaki_tables_73_82.o cctbx/eltbx/tiny_pse.o cctbx/eltbx/wavelengths.o cctbx/miller/asu.o cctbx/miller/bins.o cctbx/miller/index_generator.o cctbx/miller/index_span.o cctbx/miller/match_bijvoet_mates.o cctbx/miller/match_indices.o cctbx/miller/sym_equiv.o cctbx/sgtbx/bricks.o cctbx/sgtbx/change_of_basis_op.o cctbx/sgtbx/find_affine.o cctbx/sgtbx/group_codes.o cctbx/sgtbx/hall_in.o cctbx/sgtbx/lattice_tr.o cctbx/sgtbx/lattice_symmetry.o cctbx/sgtbx/miller.o cctbx/sgtbx/reciprocal_space_asu.o cctbx/sgtbx/reciprocal_space_ref_asu.o cctbx/sgtbx/rot_mx.o cctbx/sgtbx/rot_mx_info.o cctbx/sgtbx/row_echelon_solve.o cctbx/sgtbx/rt_mx.o cctbx/sgtbx/select_generators.o cctbx/sgtbx/seminvariant.o cctbx/sgtbx/site_symmetry.o cctbx/sgtbx/space_group.o cctbx/sgtbx/space_group_type.o cctbx/sgtbx/symbols.o cctbx/sgtbx/tensor_rank_2.o cctbx/sgtbx/tr_group.o cctbx/sgtbx/tr_vec.o cctbx/sgtbx/utils.o cctbx/sgtbx/wyckoff.o cctbx/sgtbx/reference_settings/hall_symbol_table.o cctbx/sgtbx/reference_settings/matrix_group_code_table.o cctbx/sgtbx/reference_settings/normalizer.o cctbx/sgtbx/reference_settings/wyckoff.o cctbx/uctbx/uctbx.o cctbx/uctbx/spoil_optimization.o cctbx/uctbx/crystal_orientation.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lm
g++ -o cctbx/math/time_trigonometry -fopenmp cctbx/math/time_trigonometry.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lm
g++ -o cctbx/miller/boost_python/merge_equivalents.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/miller/boost_python/merge_equivalents.cpp
g++ -o cctbx/miller/boost_python/miller_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/miller/boost_python/miller_ext.cpp
g++ -o cctbx/miller/boost_python/phase_integrator.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/miller/boost_python/phase_integrator.cpp
g++ -o cctbx/miller/boost_python/phase_transfer.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/miller/boost_python/phase_transfer.cpp
g++ -o cctbx/miller/boost_python/sym_equiv.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/miller/boost_python/sym_equiv.cpp
g++ -o cctbx/sgtbx/boost_python/brick.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/boost_python/brick.cpp
g++ -o cctbx/sgtbx/boost_python/change_of_basis.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/boost_python/change_of_basis.cpp
g++ -o cctbx/sgtbx/boost_python/find_affine.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/boost_python/find_affine.cpp
g++ -o cctbx/sgtbx/boost_python/lattice_symmetry.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/boost_python/lattice_symmetry.cpp
g++ -o cctbx/sgtbx/boost_python/phase_info.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/boost_python/phase_info.cpp
g++ -o cctbx/sgtbx/boost_python/reciprocal_space_asu.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/boost_python/reciprocal_space_asu.cpp
g++ -o cctbx/sgtbx/boost_python/rot_mx.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/boost_python/rot_mx.cpp
g++ -o cctbx/sgtbx/boost_python/rt_mx.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/boost_python/rt_mx.cpp
g++ -o cctbx/sgtbx/boost_python/search_symmetry.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/boost_python/search_symmetry.cpp
g++ -o cctbx/sgtbx/boost_python/select_generators.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/boost_python/select_generators.cpp
g++ -o cctbx/sgtbx/boost_python/seminvariant.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/boost_python/seminvariant.cpp
g++ -o cctbx/sgtbx/boost_python/sgtbx_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/boost_python/sgtbx_ext.cpp
g++ -o cctbx/sgtbx/boost_python/site_symmetry.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/boost_python/site_symmetry.cpp
g++ -o cctbx/sgtbx/boost_python/space_group.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/boost_python/space_group.cpp
g++ -o cctbx/sgtbx/boost_python/space_group_type.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/boost_python/space_group_type.cpp
g++ -o cctbx/sgtbx/boost_python/sym_equiv_sites.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/boost_python/sym_equiv_sites.cpp
g++ -o cctbx/sgtbx/boost_python/symbols.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/boost_python/symbols.cpp
g++ -o cctbx/sgtbx/boost_python/tensor_rank_2.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/boost_python/tensor_rank_2.cpp
g++ -o cctbx/sgtbx/boost_python/tr_vec.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/boost_python/tr_vec.cpp
g++ -o cctbx/sgtbx/boost_python/wyckoff.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/boost_python/wyckoff.cpp
g++ -o cctbx/sgtbx/direct_space_asu/proto/asu_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/direct_space_asu/proto/asu_ext.cpp
g++ -o cctbx/sgtbx/direct_space_asu/proto/cut.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/direct_space_asu/proto/cut.cpp
g++ -o cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.cpp
g++ -o cctbx/sgtbx/direct_space_asu/proto/reference_table.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/direct_space_asu/proto/reference_table.cpp
g++ -o cctbx/sgtbx/direct_space_asu/proto/tst_asu.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/direct_space_asu/proto/tst_asu.cpp
g++ -o cctbx/symmetry_search/boost_python/symmetry_search_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/symmetry_search/boost_python/symmetry_search_ext.cpp
g++ -o cctbx/translation_search/boost_python/fast_nv1995.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/translation_search/boost_python/fast_nv1995.cpp
g++ -o cctbx/translation_search/boost_python/fast_terms.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/translation_search/boost_python/fast_terms.cpp
g++ -o cctbx/translation_search/boost_python/symmetry_flags.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/translation_search/boost_python/symmetry_flags.cpp
g++ -o cctbx/translation_search/boost_python/translation_search_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/translation_search/boost_python/translation_search_ext.cpp
g++ -o cctbx/uctbx/boost_python/fast_minimum_reduction.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/uctbx/boost_python/fast_minimum_reduction.cpp
g++ -o cctbx/uctbx/boost_python/uctbx_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/uctbx/boost_python/uctbx_ext.cpp
g++ -o cctbx/xray/boost_python/conversions.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/xray/boost_python/conversions.cpp
g++ -o cctbx/xray/boost_python/curvatures_simple.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/xray/boost_python/curvatures_simple.cpp
g++ -o cctbx/xray/boost_python/f_model_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/xray/boost_python/f_model_bpl.cpp
g++ -o cctbx/xray/boost_python/fast_gradients.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/xray/boost_python/fast_gradients.cpp
g++ -o cctbx/xray/boost_python/gradient_flags.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/xray/boost_python/gradient_flags.cpp
g++ -o cctbx/xray/boost_python/gradients_direct.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/xray/boost_python/gradients_direct.cpp
g++ -o cctbx/xray/boost_python/grouped_data.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/xray/boost_python/grouped_data.cpp
g++ -o cctbx/xray/boost_python/minimization.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/xray/boost_python/minimization.cpp
g++ -o cctbx/xray/boost_python/sampled_model_density.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/xray/boost_python/sampled_model_density.cpp
g++ -o cctbx/xray/boost_python/sampling_base.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/xray/boost_python/sampling_base.cpp
g++ -o cctbx/xray/boost_python/scatterer.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/xray/boost_python/scatterer.cpp
g++ -o cctbx/xray/boost_python/scatterer_flags.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/xray/boost_python/scatterer_flags.cpp
g++ -o cctbx/xray/boost_python/scattering_type_registry.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/xray/boost_python/scattering_type_registry.cpp
g++ -o cctbx/xray/boost_python/structure_factors_direct.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/xray/boost_python/structure_factors_direct.cpp
g++ -o cctbx/xray/boost_python/structure_factors_simple.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/xray/boost_python/structure_factors_simple.cpp
g++ -o cctbx/xray/boost_python/targets.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/xray/boost_python/targets.cpp
g++ -o cctbx/xray/boost_python/twin_targets.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/xray/boost_python/twin_targets.cpp
g++ -o cctbx/xray/boost_python/xray_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/xray/boost_python/xray_ext.cpp
g++ -o chiltbx/handle_test.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/chiltbx/handle_test.cpp
g++ -o chiltbx/handle_test -fopenmp chiltbx/handle_test.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib
g++ -o clipper/clipper/cctbx/clipper_cctbx.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/cctbx/clipper_cctbx.cpp
g++ -o clipper/clipper/contrib/sfweight.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/contrib/sfweight.cpp
g++ -o clipper/clipper/core/atomsf.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/core/atomsf.cpp
g++ -o clipper/clipper/core/cell.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/core/cell.cpp
g++ -o clipper/clipper/core/clipper_memory.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/core/clipper_memory.cpp
g++ -o clipper/clipper/core/clipper_message.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/core/clipper_message.cpp
g++ -o clipper/clipper/core/clipper_stats.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/core/clipper_stats.cpp
g++ -o clipper/clipper/core/clipper_types.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/core/clipper_types.cpp
g++ -o clipper/clipper/core/clipper_util.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/core/clipper_util.cpp
g++ -o clipper/clipper/core/container.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/core/container.cpp
g++ -o clipper/clipper/core/container_hkl.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/core/container_hkl.cpp
g++ -o clipper/clipper/core/container_map.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/core/container_map.cpp
g++ -o clipper/clipper/core/container_types.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/core/container_types.cpp
g++ -o clipper/clipper/core/coords.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/core/coords.cpp
g++ -o clipper/clipper/core/derivs.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/core/derivs.cpp
g++ -o clipper/clipper/core/hkl_compute.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/core/hkl_compute.cpp
g++ -o clipper/clipper/core/hkl_data.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/core/hkl_data.cpp
g++ -o clipper/clipper/core/hkl_datatypes.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/core/hkl_datatypes.cpp
g++ -o clipper/clipper/core/hkl_info.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/core/hkl_info.cpp
g++ -o clipper/clipper/core/hkl_lookup.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/core/hkl_lookup.cpp
g++ -o clipper/clipper/core/hkl_operators.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/core/hkl_operators.cpp
g++ -o clipper/clipper/core/map_interp.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/core/map_interp.cpp
g++ -o clipper/clipper/core/map_utils.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/core/map_utils.cpp
g++ -o clipper/clipper/core/nxmap.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/core/nxmap.cpp
g++ -o clipper/clipper/core/nxmap_operator.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/core/nxmap_operator.cpp
g++ -o clipper/clipper/core/ramachandran.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/core/ramachandran.cpp
g++ -o clipper/clipper/core/resol_basisfn.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/core/resol_basisfn.cpp
g++ -o clipper/clipper/core/resol_fn.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/core/resol_fn.cpp
g++ -o clipper/clipper/core/resol_targetfn.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/core/resol_targetfn.cpp
g++ -o clipper/clipper/core/rotation.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/core/rotation.cpp
g++ -o clipper/clipper/core/spacegroup.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/core/spacegroup.cpp
g++ -o clipper/clipper/core/spacegroup_data.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/core/spacegroup_data.cpp
g++ -o clipper/clipper/core/symop.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/core/symop.cpp
g++ -o clipper/clipper/core/xmap.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/clipper/core/xmap.cpp
g++ -o clipper/examples/symtest.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper/examples/symtest.cpp
g++ -o clipper_adaptbx/clipper/clipper_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper_adaptbx/clipper/clipper_ext.cpp
g++ -o clipper_adaptbx/clipper/hendrickson_lattman_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper_adaptbx/clipper/hendrickson_lattman_bpl.cpp
g++ -o clipper_adaptbx/clipper/sigmaa_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper_adaptbx/clipper/sigmaa_bpl.cpp
g++ -o clipper_adaptbx/sanity_check.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/clipper_adaptbx/sanity_check.cpp
g++ -o fable/ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/fable -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/fable/ext.cpp
g++ -o fftw3tbx/ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/fftw3tbx/ext.cpp
g++ -o iotbx/ccp4_map/ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/ccp4_map/ext.cpp
g++ -o iotbx/detectors/bruker.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/detectors/bruker.cpp
g++ -o iotbx/detectors/bruker_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/detectors/bruker_ext.cpp
g++ -o iotbx/detectors/detectors_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/detectors/detectors_ext.cpp
g++ -o iotbx/detectors/image_divider.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/detectors/image_divider.cpp
g++ -o iotbx/misc/boost_python/dtrek_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/misc/boost_python/dtrek_ext.cpp
g++ -o lib/libclipper.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp clipper/clipper/core/atomsf.o clipper/clipper/core/cell.o clipper/clipper/core/clipper_memory.o clipper/clipper/core/clipper_message.o clipper/clipper/core/clipper_stats.o clipper/clipper/core/clipper_types.o clipper/clipper/core/clipper_util.o clipper/clipper/core/container.o clipper/clipper/core/container_hkl.o clipper/clipper/core/container_map.o clipper/clipper/core/container_types.o clipper/clipper/core/coords.o clipper/clipper/core/derivs.o clipper/clipper/core/hkl_compute.o clipper/clipper/core/hkl_data.o clipper/clipper/core/hkl_datatypes.o clipper/clipper/core/hkl_info.o clipper/clipper/core/hkl_lookup.o clipper/clipper/core/hkl_operators.o clipper/clipper/core/map_interp.o clipper/clipper/core/map_utils.o clipper/clipper/core/nxmap.o clipper/clipper/core/nxmap_operator.o clipper/clipper/core/ramachandran.o clipper/clipper/core/resol_basisfn.o clipper/clipper/core/resol_fn.o clipper/clipper/core/resol_targetfn.o clipper/clipper/core/rotation.o clipper/clipper/core/spacegroup.o clipper/clipper/core/spacegroup_data.o clipper/clipper/core/symop.o clipper/clipper/core/xmap.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lm
g++ -o iotbx/misc/boost_python/scalepack_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/misc/boost_python/scalepack_ext.cpp
g++ -o exe_dev/clipper.sanity_check -fopenmp clipper_adaptbx/sanity_check.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lclipper -lm
g++ -o exe_dev/clipper.symtest -fopenmp clipper/examples/symtest.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lclipper -lm
g++ -o iotbx/mtz/batch_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/mtz/batch_bpl.cpp
g++ -o iotbx/mtz/column.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/mtz/column.cpp
g++ -o iotbx/mtz/column_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/mtz/column_bpl.cpp
g++ -o iotbx/mtz/crystal.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/mtz/crystal.cpp
g++ -o iotbx/mtz/crystal_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/mtz/crystal_bpl.cpp
g++ -o iotbx/mtz/dataset.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/mtz/dataset.cpp
g++ -o iotbx/mtz/dataset_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/mtz/dataset_bpl.cpp
g++ -o iotbx/mtz/ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/mtz/ext.cpp
g++ -o iotbx/mtz/object.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/mtz/object.cpp
g++ -o iotbx/mtz/object_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/mtz/object_bpl.cpp
g++ -o iotbx/pdb/atom_selection.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/pdb/atom_selection.cpp
g++ -o iotbx/pdb/common_residue_names_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/pdb/common_residue_names_bpl.cpp
g++ -o iotbx/pdb/construct_hierarchy.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/pdb/construct_hierarchy.cpp
g++ -o iotbx/pdb/ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/pdb/ext.cpp
g++ -o iotbx/pdb/hierarchy.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/pdb/hierarchy.cpp
g++ -o iotbx/pdb/hierarchy_atom_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/pdb/hierarchy_atom_bpl.cpp
g++ -o iotbx/pdb/hierarchy_atoms.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/pdb/hierarchy_atoms.cpp
g++ -o iotbx/pdb/hierarchy_atoms_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/pdb/hierarchy_atoms_bpl.cpp
g++ -o iotbx/pdb/hierarchy_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/pdb/hierarchy_ext.cpp
g++ -o iotbx/pdb/hierarchy_select.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/pdb/hierarchy_select.cpp
g++ -o iotbx/pdb/hierarchy_write.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/pdb/hierarchy_write.cpp
g++ -o iotbx/pdb/hybrid_36_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/pdb/hybrid_36_bpl.cpp
gcc -o iotbx/pdb/hybrid_36_c.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/pdb/hybrid_36_c.c
g++ -o iotbx/pdb/hybrid_36_cpp.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/pdb/hybrid_36_cpp.cpp
g++ -o iotbx/pdb/input.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/pdb/input.cpp
g++ -o iotbx/pdb/input_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/pdb/input_bpl.cpp
g++ -o iotbx/pdb/input_write.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/pdb/input_write.cpp
g++ -o iotbx/pdb/overall_counts.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/pdb/overall_counts.cpp
g++ -o iotbx/pdb/rna_dna_atom_names_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/pdb/rna_dna_atom_names_bpl.cpp
g++ -o iotbx/pdb/utils.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/pdb/utils.cpp
g++ -o iotbx/pdb/write_utils.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/pdb/write_utils.cpp
g++ -o iotbx/pdb/xray_structure_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/pdb/xray_structure_bpl.cpp
g++ -o iotbx/shelx/shelx_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/shelx/shelx_ext.cpp
g++ -o iotbx/wildcard_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/wildcard_ext.cpp
g++ -o iotbx/xplor/boost_python/xplor_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/ccp4io/lib/src -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/iotbx/xplor/boost_python/xplor_ext.cpp
g++ -o lib/libboost_python.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp boost/libs/python/src/numeric.o boost/libs/python/src/list.o boost/libs/python/src/long.o boost/libs/python/src/dict.o boost/libs/python/src/tuple.o boost/libs/python/src/str.o boost/libs/python/src/slice.o boost/libs/python/src/converter/from_python.o boost/libs/python/src/converter/registry.o boost/libs/python/src/converter/type_id.o boost/libs/python/src/object/enum.o boost/libs/python/src/object/class.o boost/libs/python/src/object/function.o boost/libs/python/src/object/inheritance.o boost/libs/python/src/object/life_support.o boost/libs/python/src/object/pickle_support.o boost/libs/python/src/errors.o boost/libs/python/src/module.o boost/libs/python/src/converter/builtin_converters.o boost/libs/python/src/converter/arg_to_python_base.o boost/libs/python/src/object/iterator.o boost/libs/python/src/object/stl_iterator.o boost/libs/python/src/object_protocol.o boost/libs/python/src/object_operators.o boost/libs/python/src/wrapper.o boost/libs/python/src/import.o boost/libs/python/src/exec.o boost/libs/python/src/object/function_doc_signature.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib
g++ -o scitbx/boost_python/utils.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/boost_python/utils.cpp
g++ -o lib/boost_python_hybrid_times_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp boost_adaptbx/hybrid_times_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lboost_python -lm
g++ -o lib/boost_rational_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp boost_adaptbx/rational_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lboost_python -lm
g++ -o lib/boost_adaptbx_python_streambuf_test_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp boost_adaptbx/tests/python_streambuf_test_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lboost_python -lm
g++ -o lib/boost_optional_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp boost_adaptbx/optional_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lboost_python -lm
g++ -o lib/boost_python_meta_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp boost_adaptbx/meta_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lboost_python -lm
g++ -o lib/boost_tuple_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp boost_adaptbx/tuple_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lboost_python -lm
g++ -o scitbx/boost_python/slice.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/boost_python/slice.cpp
g++ -o scitbx/array_family/boost_python/utils.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/boost_python/utils.cpp
g++ -o omptbx/stubs.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/omptbx/stubs.cpp
g++ -o lib/clipper_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp clipper_adaptbx/clipper/clipper_ext.o clipper_adaptbx/clipper/hendrickson_lattman_bpl.o clipper_adaptbx/clipper/sigmaa_bpl.o clipper/clipper/contrib/sfweight.o clipper/clipper/cctbx/clipper_cctbx.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lclipper -lcctbx -lboost_python -lm
g++ -o lib/libomptbx.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp omptbx/stubs.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib
g++ -o lib/fable_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp fable/ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lboost_python -lm
g++ -o lib/libccp4io.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp ccp4io_adaptbx/csymlib.o ccp4io/lib/src/library_err.o ccp4io/lib/src/library_file.o ccp4io/lib/src/library_utils.o ccp4io/lib/src/ccp4_array.o ccp4io/lib/src/ccp4_parser.o ccp4io/lib/src/ccp4_unitcell.o ccp4io/lib/src/cvecmat.o ccp4io/lib/src/cmtzlib.o ccp4io/lib/src/cmap_accessor.o ccp4io/lib/src/cmap_close.o ccp4io/lib/src/cmap_data.o ccp4io/lib/src/cmap_header.o ccp4io/lib/src/cmap_labels.o ccp4io/lib/src/cmap_open.o ccp4io/lib/src/cmap_skew.o ccp4io/lib/src/cmap_stats.o ccp4io/lib/src/cmap_symop.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lm
g++ -o lib/iotbx_detectors_bruker_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp iotbx/detectors/bruker_ext.o iotbx/detectors/bruker.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lboost_python -lm
g++ -o lib/iotbx_ccp4_map_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp iotbx/ccp4_map/ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lccp4io -lboost_python -lm
g++ -o lib/iotbx_detectors_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp iotbx/detectors/detectors_ext.o iotbx/detectors/image_divider.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lboost_python -lm
g++ -o lib/iotbx_dtrek_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp iotbx/misc/boost_python/dtrek_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lboost_python -lm
g++ -o lib/libiotbx_mtz.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp iotbx/mtz/object.o iotbx/mtz/crystal.o iotbx/mtz/dataset.o iotbx/mtz/column.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lccp4io -lm
g++ -o lib/iotbx_scalepack_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp iotbx/misc/boost_python/scalepack_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lboost_python -lm
g++ -o lib/iotbx_wildcard_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp iotbx/wildcard_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lboost_python -lm
g++ -o mmtbx/masks/atom_mask.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/mmtbx/masks/atom_mask.cpp
g++ -o rstbx/dps_core/dps_core.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/rstbx/dps_core/dps_core.cpp
g++ -o lib/iotbx_xplor_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp iotbx/xplor/boost_python/xplor_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lboost_python -lm
g++ -o lib/libscitbx_boost_python.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp scitbx/boost_python/utils.o scitbx/boost_python/slice.o scitbx/array_family/boost_python/utils.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lboost_python
g++ -o lib/libiotbx_pdb.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp iotbx/pdb/hybrid_36_c.o iotbx/pdb/hybrid_36_cpp.o iotbx/pdb/utils.o iotbx/pdb/write_utils.o iotbx/pdb/hierarchy.o iotbx/pdb/hierarchy_select.o iotbx/pdb/hierarchy_atoms.o iotbx/pdb/construct_hierarchy.o iotbx/pdb/overall_counts.o iotbx/pdb/hierarchy_write.o iotbx/pdb/atom_selection.o iotbx/pdb/input.o iotbx/pdb/input_write.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib
g++ -o rstbx/dps_core/directional_fft.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/rstbx/dps_core/directional_fft.cpp
g++ -o rstbx/dps_core/direction.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/rstbx/dps_core/direction.cpp
g++ -o rstbx/diffraction/ewald_sphere.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/rstbx/diffraction/ewald_sphere.cpp
g++ -o scitbx/minpack/raw.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/minpack/raw.cpp
gcc -o scitbx/slatec/lib_c.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/slatec/lib_c.c
g++ -o lib/cctbx_eltbx_neutron_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp cctbx/eltbx/boost_python/neutron_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_array_family_flex_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp cctbx/array_family/boost_python/flex_ext.o cctbx/array_family/boost_python/flex_hendrickson_lattman.o cctbx/array_family/boost_python/flex_miller_index.o cctbx/array_family/boost_python/flex_xray_scatterer.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_statistics_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp cctbx/boost_python/statistics_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/iotbx_pdb_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp iotbx/pdb/ext.o iotbx/pdb/hybrid_36_bpl.o iotbx/pdb/common_residue_names_bpl.o iotbx/pdb/rna_dna_atom_names_bpl.o iotbx/pdb/input_bpl.o iotbx/pdb/xray_structure_bpl.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_uctbx_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp cctbx/uctbx/boost_python/uctbx_ext.o cctbx/uctbx/boost_python/fast_minimum_reduction.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/libscitbx_slatec.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp scitbx/slatec/lib_c.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lm
g++ -o lib/cctbx_adp_restraints_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp cctbx/adp_restraints/adp_restraints_ext.o cctbx/adp_restraints/rigid_bond_bpl.o cctbx/adp_restraints/rigid_bond.o cctbx/adp_restraints/adp_similarity_bpl.o cctbx/adp_restraints/adp_similarity.o cctbx/adp_restraints/isotropic_adp_bpl.o cctbx/adp_restraints/isotropic_adp.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_maptbx_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp cctbx/maptbx/boost_python/maptbx_ext.o cctbx/maptbx/boost_python/grid_indices_around_sites.o cctbx/maptbx/boost_python/grid_tags.o cctbx/maptbx/boost_python/gridding.o cctbx/maptbx/boost_python/misc.o cctbx/maptbx/boost_python/peak_search.o cctbx/maptbx/boost_python/pymol_interface.o cctbx/maptbx/boost_python/statistics.o cctbx/maptbx/boost_python/structure_factors.o cctbx/maptbx/boost_python/coordinate_transformers.o cctbx/maptbx/boost_python/mapper.o cctbx/maptbx/boost_python/basic_map.o cctbx/maptbx/boost_python/real_space_refinement.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_eltbx_henke_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp cctbx/eltbx/boost_python/henke_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_eltbx_xray_scattering_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp cctbx/eltbx/boost_python/xray_scattering_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/iotbx_shelx_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp iotbx/shelx/shelx_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lboost_python -lm
g++ -o lib/fftw3tbx_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp fftw3tbx/ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lfftw3 -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_masks_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp cctbx/masks/boost_python/masks_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_eltbx_sasaki_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp cctbx/eltbx/boost_python/sasaki_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_emma_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp cctbx/boost_python/emma_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_eltbx_fp_fdp_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp cctbx/eltbx/boost_python/fp_fdp_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_eltbx_covalent_radii_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp cctbx/eltbx/boost_python/covalent_radii_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_geometry_restraints_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp cctbx/geometry_restraints/geometry_restraints_ext.o cctbx/geometry_restraints/bond_bpl.o cctbx/geometry_restraints/bond_similarity_bpl.o cctbx/geometry_restraints/bond_sorted_bpl.o cctbx/geometry_restraints/nonbonded_bpl.o cctbx/geometry_restraints/nonbonded_sorted_bpl.o cctbx/geometry_restraints/angle_bpl.o cctbx/geometry_restraints/dihedral_bpl.o cctbx/geometry_restraints/chirality_bpl.o cctbx/geometry_restraints/planarity_bpl.o cctbx/geometry_restraints/motif_bpl.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_sgtbx_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp cctbx/sgtbx/boost_python/sgtbx_ext.o cctbx/sgtbx/boost_python/brick.o cctbx/sgtbx/boost_python/change_of_basis.o cctbx/sgtbx/boost_python/find_affine.o cctbx/sgtbx/boost_python/lattice_symmetry.o cctbx/sgtbx/boost_python/phase_info.o cctbx/sgtbx/boost_python/reciprocal_space_asu.o cctbx/sgtbx/boost_python/rot_mx.o cctbx/sgtbx/boost_python/rt_mx.o cctbx/sgtbx/boost_python/search_symmetry.o cctbx/sgtbx/boost_python/seminvariant.o cctbx/sgtbx/boost_python/site_symmetry.o cctbx/sgtbx/boost_python/space_group.o cctbx/sgtbx/boost_python/space_group_type.o cctbx/sgtbx/boost_python/sym_equiv_sites.o cctbx/sgtbx/boost_python/symbols.o cctbx/sgtbx/boost_python/tensor_rank_2.o cctbx/sgtbx/boost_python/tr_vec.o cctbx/sgtbx/boost_python/wyckoff.o cctbx/sgtbx/boost_python/select_generators.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_translation_search_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp cctbx/translation_search/boost_python/translation_search_ext.o cctbx/translation_search/boost_python/fast_nv1995.o cctbx/translation_search/boost_python/fast_terms.o cctbx/translation_search/boost_python/symmetry_flags.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_eltbx_tiny_pse_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp cctbx/eltbx/boost_python/tiny_pse_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_miller_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp cctbx/miller/boost_python/miller_ext.o cctbx/miller/boost_python/asu.o cctbx/miller/boost_python/bins.o cctbx/miller/boost_python/change_basis.o cctbx/miller/boost_python/expand_to_p1.o cctbx/miller/boost_python/index_generator.o cctbx/miller/boost_python/index_span.o cctbx/miller/boost_python/match_bijvoet_mates.o cctbx/miller/boost_python/match_indices.o cctbx/miller/boost_python/merge_equivalents.o cctbx/miller/boost_python/phase_integrator.o cctbx/miller/boost_python/phase_transfer.o cctbx/miller/boost_python/sym_equiv.o cctbx/miller/boost_python/f_calc_map.o cctbx/miller/boost_python/lookup_utils.o cctbx/miller/boost_python/amplitude_normalisation.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/iotbx_mtz_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp iotbx/mtz/ext.o iotbx/mtz/object_bpl.o iotbx/mtz/crystal_bpl.o iotbx/mtz/dataset_bpl.o iotbx/mtz/column_bpl.o iotbx/mtz/batch_bpl.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -liotbx_mtz -lcctbx -lccp4io -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_orientation_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp cctbx/boost_python/orientation_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/libscitbx_minpack.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp scitbx/minpack/raw.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lm
g++ -o lib/cctbx_eltbx_icsd_radii_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp cctbx/eltbx/boost_python/icsd_radii_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_adptbx_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp cctbx/adptbx/boost_python/adptbx_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_symmetry_search_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp cctbx/symmetry_search/boost_python/symmetry_search_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_dmtbx_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp cctbx/dmtbx/boost_python/dmtbx_ext.o cctbx/dmtbx/boost_python/triplet_phase_relation.o cctbx/dmtbx/boost_python/triplet_generator.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_math_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp cctbx/math/boost_python/math_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_eltbx_chemical_elements_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp cctbx/eltbx/boost_python/chemical_elements_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_crystal_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp cctbx/crystal/crystal_ext.o cctbx/crystal/asu_clusters_bpl.o cctbx/crystal/close_packing_bpl.o cctbx/crystal/coordination_sequences_bpl.o cctbx/crystal/direct_space_asu_bpl.o cctbx/crystal/incremental_pairs_bpl.o cctbx/crystal/neighbors_bpl.o cctbx/crystal/pair_tables_bpl.o cctbx/crystal/site_cluster_analysis_bpl.o cctbx/crystal/symmetry_bpl.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_xray_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp cctbx/xray/boost_python/xray_ext.o cctbx/xray/boost_python/conversions.o cctbx/xray/boost_python/gradient_flags.o cctbx/xray/boost_python/gradients_direct.o cctbx/xray/boost_python/fast_gradients.o cctbx/xray/boost_python/minimization.o cctbx/xray/boost_python/scatterer_flags.o cctbx/xray/boost_python/scatterer.o cctbx/xray/boost_python/scattering_type_registry.o cctbx/xray/boost_python/sampling_base.o cctbx/xray/boost_python/sampled_model_density.o cctbx/xray/boost_python/structure_factors_direct.o cctbx/xray/boost_python/structure_factors_simple.o cctbx/xray/boost_python/curvatures_simple.o cctbx/xray/boost_python/targets.o cctbx/xray/boost_python/f_model_bpl.o cctbx/xray/boost_python/twin_targets.o cctbx/xray/boost_python/grouped_data.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_eltbx_wavelengths_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp cctbx/eltbx/boost_python/wavelengths_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o mmtbx/alignment_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/mmtbx/alignment_ext.cpp
g++ -o lib/librstbx.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp rstbx/dps_core/dps_core.o rstbx/dps_core/directional_fft.o rstbx/dps_core/direction.o rstbx/diffraction/ewald_sphere.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lm
g++ -o mmtbx/bulk_solvent/bulk_solvent_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/mmtbx/bulk_solvent/bulk_solvent_ext.cpp
g++ -o mmtbx/bulk_solvent/bulk_solvent.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/mmtbx/bulk_solvent/bulk_solvent.cpp
g++ -o mmtbx/dynamics/dynamics_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/mmtbx/dynamics/dynamics_ext.cpp
g++ -o mmtbx/dynamics/dynamics.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/mmtbx/dynamics/dynamics.cpp
g++ -o mmtbx/f_model/f_model_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/mmtbx/f_model/f_model_ext.cpp
g++ -o mmtbx/masks/masks_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/mmtbx/masks/masks_ext.cpp
g++ -o mmtbx/max_lik/max_lik_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/mmtbx/max_lik/max_lik_ext.cpp
g++ -o mmtbx/max_lik/max_lik.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/mmtbx/max_lik/max_lik.cpp
g++ -o mmtbx/ncs/restraints_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/mmtbx/ncs/restraints_ext.cpp
g++ -o lib/mmtbx_alignment_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp mmtbx/alignment_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o mmtbx/rsr/rsr_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/mmtbx/rsr/rsr_ext.cpp
g++ -o mmtbx/scaling/scaling_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/mmtbx/scaling/scaling_ext.cpp
g++ -o mmtbx/scaling/twinning_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/mmtbx/scaling/twinning_bpl.cpp
g++ -o mmtbx/scaling/relative_scaling_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/mmtbx/scaling/relative_scaling_bpl.cpp
g++ -o lib/mmtbx_dynamics_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp mmtbx/dynamics/dynamics_ext.o mmtbx/dynamics/dynamics.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o mmtbx/scaling/outlier_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/mmtbx/scaling/outlier_bpl.cpp
g++ -o lib/libcctbx_sgtbx_asu.so -fopenmp -shared cctbx/sgtbx/direct_space_asu/proto/cut.o cctbx/sgtbx/direct_space_asu/proto/reference_table.o cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lm
g++ -o exe_dev/cctbx.getting_started -fopenmp cctbx/examples/getting_started.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx_sgtbx_asu -lcctbx -lm
g++ -o exe_dev/cctbx.find_distances -fopenmp cctbx/examples/find_distances.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx_sgtbx_asu -lcctbx -lm
g++ -o exe_dev/cctbx.sys_abs_equiv_space_groups -fopenmp cctbx/examples/sys_abs_equiv_space_groups.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx_sgtbx_asu -lcctbx -lm
g++ -o lib/libmmtbx_masks.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp mmtbx/masks/atom_mask.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lomptbx -lm
g++ -o exe_dev/cctbx.lattice_symmetry -fopenmp cctbx/examples/lattice_symmetry.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx_sgtbx_asu -lcctbx -lm
g++ -o lib/cctbx_sgtbx_asu_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp cctbx/sgtbx/direct_space_asu/proto/asu_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx_sgtbx_asu -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o exe_dev/cctbx.sym_equiv_sites -fopenmp cctbx/examples/sym_equiv_sites.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx_sgtbx_asu -lcctbx -lm
g++ -o exe_dev/cctbx.convert_ccp4_symop_lib -fopenmp cctbx/examples/convert_ccp4_symop_lib.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx_sgtbx_asu -lcctbx -lm
g++ -o lib/mmtbx_f_model_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp mmtbx/f_model/f_model_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o cctbx/sgtbx/direct_space_asu/proto/tst_asu -fopenmp cctbx/sgtbx/direct_space_asu/proto/tst_asu.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx_sgtbx_asu -lcctbx -lm
g++ -o mmtbx/tls/tls_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/mmtbx/tls/tls_ext.cpp
g++ -o lib/iotbx_pdb_hierarchy_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp iotbx/pdb/hierarchy_ext.o iotbx/pdb/hierarchy_atom_bpl.o iotbx/pdb/hierarchy_atoms_bpl.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o mmtbx/utils/utils_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/mmtbx/utils/utils_ext.cpp
g++ -o lib/mmtbx_ncs_restraints_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp mmtbx/ncs/restraints_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/mmtbx_bulk_solvent_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp mmtbx/bulk_solvent/bulk_solvent_ext.o mmtbx/bulk_solvent/bulk_solvent.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o omptbx/ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/omptbx/ext.cpp
g++ -o lib/mmtbx_rsr_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp mmtbx/rsr/rsr_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/mmtbx_masks_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp mmtbx/masks/masks_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lmmtbx_masks -lcctbx_sgtbx_asu -lcctbx -lomptbx -lscitbx_boost_python -lboost_python -lm
g++ -o rstbx/array_family/ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/rstbx/array_family/ext.cpp
g++ -o rstbx/array_family/flex_rstbx_arrays.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/rstbx/array_family/flex_rstbx_arrays.cpp
g++ -o rstbx/ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/rstbx/ext.cpp
g++ -o scitbx/array_family/boost_python/flex_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/boost_python/flex_ext.cpp
g++ -o scitbx/array_family/boost_python/flex_grid.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/boost_python/flex_grid.cpp
g++ -o scitbx/array_family/boost_python/flex_bool.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/boost_python/flex_bool.cpp
g++ -o scitbx/array_family/boost_python/flex_size_t.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/boost_python/flex_size_t.cpp
g++ -o lib/omptbx_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp omptbx/ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lomptbx -lboost_python -lm
g++ -o scitbx/array_family/boost_python/flex_int.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/boost_python/flex_int.cpp
g++ -o scitbx/array_family/boost_python/flex_long.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/boost_python/flex_long.cpp
g++ -o scitbx/array_family/boost_python/flex_float.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/boost_python/flex_float.cpp
g++ -o lib/mmtbx_utils_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp mmtbx/utils/utils_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/mmtbx_max_lik_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp mmtbx/max_lik/max_lik_ext.o mmtbx/max_lik/max_lik.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/array_family/boost_python/flex_double.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/boost_python/flex_double.cpp
g++ -o scitbx/array_family/boost_python/flex_double_matrix.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/boost_python/flex_double_matrix.cpp
g++ -o lib/rstbx_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp rstbx/ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lrstbx -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/array_family/boost_python/flex_complex_double.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/boost_python/flex_complex_double.cpp
g++ -o scitbx/array_family/boost_python/flex_std_string.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/boost_python/flex_std_string.cpp
g++ -o lib/mmtbx_scaling_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp mmtbx/scaling/scaling_ext.o mmtbx/scaling/twinning_bpl.o mmtbx/scaling/relative_scaling_bpl.o mmtbx/scaling/outlier_bpl.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/array_family/boost_python/flex_random.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/boost_python/flex_random.cpp
g++ -o scitbx/array_family/boost_python/flex_sort.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/boost_python/flex_sort.cpp
g++ -o lib/mmtbx_tls_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp mmtbx/tls/tls_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/array_family/boost_python/flex_histogram.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/boost_python/flex_histogram.cpp
g++ -o scitbx/array_family/boost_python/flex_mean_and_variance.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/boost_python/flex_mean_and_variance.cpp
g++ -o scitbx/array_family/boost_python/flex_median.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/boost_python/flex_median.cpp
g++ -o scitbx/array_family/boost_python/flex_linear_interpolation.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/boost_python/flex_linear_interpolation.cpp
g++ -o scitbx/array_family/boost_python/flex_vec3_double.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/boost_python/flex_vec3_double.cpp
g++ -o scitbx/array_family/boost_python/flex_vec2_double.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/boost_python/flex_vec2_double.cpp
g++ -o scitbx/array_family/boost_python/flex_sym_mat3_double.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp
g++ -o scitbx/array_family/boost_python/flex_tiny_size_t_2.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp
g++ -o scitbx/array_family/boost_python/loops.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/boost_python/loops.cpp
g++ -o scitbx/array_family/boost_python/show_sizes.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/boost_python/show_sizes.cpp
g++ -o scitbx/array_family/boost_python/shared_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/boost_python/shared_ext.cpp
g++ -o scitbx/boost_python/slice_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/boost_python/slice_ext.cpp
g++ -o scitbx/fftpack/boost_python/fftpack_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/fftpack/boost_python/fftpack_ext.cpp
g++ -o scitbx/iso_surface/iso_surface_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/iso_surface/iso_surface_ext.cpp
g++ -o scitbx/lbfgs/ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/ext.cpp
g++ -o lib/scitbx_boost_python_slice_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp scitbx/boost_python/slice_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/lbfgsb/boost_python/lbfgsb_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp
g++ -o scitbx/linalg/boost_python/linalg_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/linalg/boost_python/linalg_ext.cpp
g++ -o scitbx/linalg/boost_python/matrix.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/linalg/boost_python/matrix.cpp
g++ -o scitbx/linalg/boost_python/cholesky.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/linalg/boost_python/cholesky.cpp
g++ -o lib/rstbx_array_family_flex_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp rstbx/array_family/ext.o rstbx/array_family/flex_rstbx_arrays.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lrstbx -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/linalg/boost_python/householder.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/linalg/boost_python/householder.cpp
g++ -o scitbx/linalg/boost_python/svd.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/linalg/boost_python/svd.cpp
g++ -o scitbx/linalg/boost_python/eigensystem.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/linalg/boost_python/eigensystem.cpp
In file included from /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb.h:8:0,
                 from /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:3:
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h: In function 'void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const FloatType&, const FloatType&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<int>&, std::string&, const int&, std::string&, const scitbx::lbfgsb::raw::ref1<bool>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, bool) [with FloatType = double, std::string = std::basic_string<char>]':
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:4433:5:   instantiated from 'void scitbx::lbfgsb::raw::setulb(const int&, const int&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const FloatType&, const FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, std::string&, const int&, std::string&, const scitbx::lbfgsb::raw::ref1<bool>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, bool) [with FloatType = double, std::string = std::basic_string<char>]'
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb.h:142:11:   instantiated from 'bool scitbx::lbfgsb::minimizer<FloatType>::process(const scitbx::af::ref<ElementType>&, const FloatType&, const scitbx::af::ref<ElementType>&, bool) [with FloatType = double]'
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:19:7:   instantiated from 'static void scitbx::lbfgsb::<unnamed>::minimizer_wrappers<FloatType>::wrap() [with FloatType = double]'
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:112:33:   instantiated from here
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:3905:23: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:4433:5:   instantiated from 'void scitbx::lbfgsb::raw::setulb(const int&, const int&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const FloatType&, const FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, std::string&, const int&, std::string&, const scitbx::lbfgsb::raw::ref1<bool>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, bool) [with FloatType = double, std::string = std::basic_string<char>]'
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb.h:142:11:   instantiated from 'bool scitbx::lbfgsb::minimizer<FloatType>::process(const scitbx::af::ref<ElementType>&, const FloatType&, const scitbx::af::ref<ElementType>&, bool) [with FloatType = double]'
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:19:7:   instantiated from 'static void scitbx::lbfgsb::<unnamed>::minimizer_wrappers<FloatType>::wrap() [with FloatType = double]'
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:112:33:   instantiated from here
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:3971:24: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h: In function 'void scitbx::lbfgsb::raw::prn3lb(const int&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const FloatType&, const std::string&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const FloatType&, const FloatType&, const int&, const std::string&, const int&, const FloatType&, const FloatType&, const int&, const FloatType&, const FloatType&, const FloatType&) [with FloatType = double, std::string = std::basic_string<char>]':
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:3786:9:   instantiated from 'void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const FloatType&, const FloatType&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<int>&, std::string&, const int&, std::string&, const scitbx::lbfgsb::raw::ref1<bool>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, bool) [with FloatType = double, std::string = std::basic_string<char>]'
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:4433:5:   instantiated from 'void scitbx::lbfgsb::raw::setulb(const int&, const int&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const FloatType&, const FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, std::string&, const int&, std::string&, const scitbx::lbfgsb::raw::ref1<bool>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, bool) [with FloatType = double, std::string = std::basic_string<char>]'
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb.h:142:11:   instantiated from 'bool scitbx::lbfgsb::minimizer<FloatType>::process(const scitbx::af::ref<ElementType>&, const FloatType&, const scitbx::af::ref<ElementType>&, bool) [with FloatType = double]'
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:19:7:   instantiated from 'static void scitbx::lbfgsb::<unnamed>::minimizer_wrappers<FloatType>::wrap() [with FloatType = double]'
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:112:33:   instantiated from here
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:970:7: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:971:7: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:3786:9:   instantiated from 'void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const FloatType&, const FloatType&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<int>&, std::string&, const int&, std::string&, const scitbx::lbfgsb::raw::ref1<bool>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, bool) [with FloatType = double, std::string = std::basic_string<char>]'
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:4433:5:   instantiated from 'void scitbx::lbfgsb::raw::setulb(const int&, const int&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const FloatType&, const FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, std::string&, const int&, std::string&, const scitbx::lbfgsb::raw::ref1<bool>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, bool) [with FloatType = double, std::string = std::basic_string<char>]'
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb.h:142:11:   instantiated from 'bool scitbx::lbfgsb::minimizer<FloatType>::process(const scitbx::af::ref<ElementType>&, const FloatType&, const scitbx::af::ref<ElementType>&, bool) [with FloatType = double]'
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:19:7:   instantiated from 'static void scitbx::lbfgsb::<unnamed>::minimizer_wrappers<FloatType>::wrap() [with FloatType = double]'
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp:112:33:   instantiated from here
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:982:25: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:983:25: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:984:25: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:985:25: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:986:25: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:993:25: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:994:25: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:1005:27: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:1006:27: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:1007:27: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:1008:27: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:1009:27: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:1010:27: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:1011:27: warning: format not a string literal and no format arguments
g++ -o scitbx/lstbx/boost_python/lstbx_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lstbx/boost_python/lstbx_ext.cpp
g++ -o scitbx/lstbx/boost_python/normal_equations.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lstbx/boost_python/normal_equations.cpp
g++ -o lib/scitbx_iso_surface_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp scitbx/iso_surface/iso_surface_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/math/boost_python/math_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/boost_python/math_ext.cpp
g++ -o scitbx/math/boost_python/basic_statistics.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/boost_python/basic_statistics.cpp
g++ -o scitbx/math/boost_python/gaussian.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/boost_python/gaussian.cpp
g++ -o scitbx/math/boost_python/golay.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/boost_python/golay.cpp
g++ -o scitbx/math/boost_python/minimum_covering_sphere.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/boost_python/minimum_covering_sphere.cpp
g++ -o scitbx/math/boost_python/principal_axes_of_inertia.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/boost_python/principal_axes_of_inertia.cpp
g++ -o scitbx/math/boost_python/row_echelon.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/boost_python/row_echelon.cpp
g++ -o scitbx/math/boost_python/tensor_rank_2.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/boost_python/tensor_rank_2.cpp
g++ -o lib/scitbx_lbfgsb_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp scitbx/lbfgsb/boost_python/lbfgsb_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/math/boost_python/chebyshev.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/boost_python/chebyshev.cpp
g++ -o lib/scitbx_linalg_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp scitbx/linalg/boost_python/linalg_ext.o scitbx/linalg/boost_python/matrix.o scitbx/linalg/boost_python/cholesky.o scitbx/linalg/boost_python/householder.o scitbx/linalg/boost_python/svd.o scitbx/linalg/boost_python/eigensystem.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o lib/scitbx_lstbx_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp scitbx/lstbx/boost_python/lstbx_ext.o scitbx/lstbx/boost_python/normal_equations.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/math/boost_python/icosahedron.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/boost_python/icosahedron.cpp
g++ -o scitbx/math/boost_python/slatec.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/boost_python/slatec.cpp
g++ -o scitbx/math/boost_python/line_search.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/boost_python/line_search.cpp
g++ -o lib/scitbx_array_family_flex_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp scitbx/array_family/boost_python/flex_ext.o scitbx/array_family/boost_python/flex_grid.o scitbx/array_family/boost_python/flex_bool.o scitbx/array_family/boost_python/flex_size_t.o scitbx/array_family/boost_python/flex_int.o scitbx/array_family/boost_python/flex_long.o scitbx/array_family/boost_python/flex_float.o scitbx/array_family/boost_python/flex_double.o scitbx/array_family/boost_python/flex_double_matrix.o scitbx/array_family/boost_python/flex_complex_double.o scitbx/array_family/boost_python/flex_std_string.o scitbx/array_family/boost_python/flex_random.o scitbx/array_family/boost_python/flex_sort.o scitbx/array_family/boost_python/flex_histogram.o scitbx/array_family/boost_python/flex_mean_and_variance.o scitbx/array_family/boost_python/flex_median.o scitbx/array_family/boost_python/flex_linear_interpolation.o scitbx/array_family/boost_python/flex_vec3_double.o scitbx/array_family/boost_python/flex_vec2_double.o scitbx/array_family/boost_python/flex_sym_mat3_double.o scitbx/array_family/boost_python/flex_tiny_size_t_2.o scitbx/array_family/boost_python/loops.o scitbx/array_family/boost_python/show_sizes.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o lib/scitbx_fftpack_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp scitbx/fftpack/boost_python/fftpack_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lomptbx -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/math/boost_python/r3_rotation.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/boost_python/r3_rotation.cpp
g++ -o scitbx/math/boost_python/resample.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/boost_python/resample.cpp
g++ -o lib/scitbx_lbfgs_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp scitbx/lbfgs/ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/math/boost_python/quadrature.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/boost_python/quadrature.cpp
g++ -o scitbx/math/boost_python/unimodular_generator.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/boost_python/unimodular_generator.cpp
g++ -o scitbx/math/boost_python/halton.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/boost_python/halton.cpp
g++ -o scitbx/math/boost_python/least_squares_plane.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/boost_python/least_squares_plane.cpp
g++ -o lib/scitbx_array_family_shared_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp scitbx/array_family/boost_python/shared_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/math/boost_python/continued_fraction.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/boost_python/continued_fraction.cpp
g++ -o scitbx/math/boost_python/numeric_limits.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/boost_python/numeric_limits.cpp
g++ -o scitbx/math/boost_python/distributions.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/boost_python/distributions.cpp
g++ -o scitbx/math/boost_python/exp_functions.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/boost_python/exp_functions.cpp
g++ -o scitbx/math/boost_python/zernike.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/boost_python/zernike.cpp
g++ -o scitbx/math/boost_python/zernike_moments.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/boost_python/zernike_moments.cpp
g++ -o scitbx/math/boost_python/weighted_covariance.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/boost_python/weighted_covariance.cpp
g++ -o scitbx/minpack/ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/minpack/ext.cpp
g++ -o scitbx/random/boost_python/random_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/random/boost_python/random_ext.cpp
g++ -o scitbx/random/boost_python/random.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/random/boost_python/random.cpp
g++ -o scitbx/rigid_body/ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/rigid_body/ext.cpp
g++ -o scitbx/sparse/boost_python/vector.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/sparse/boost_python/vector.cpp
g++ -o scitbx/sparse/boost_python/matrix.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/sparse/boost_python/matrix.cpp
g++ -o scitbx/sparse/boost_python/approx_equal.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/sparse/boost_python/approx_equal.cpp
g++ -o scitbx/sparse/boost_python/random.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/sparse/boost_python/random.cpp
g++ -o scitbx/sparse/boost_python/lu_factorization.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/sparse/boost_python/lu_factorization.cpp
g++ -o scitbx/sparse/boost_python/sparse_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/sparse/boost_python/sparse_ext.cpp
g++ -o scitbx/stl/map_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/stl/map_ext.cpp
g++ -o scitbx/stl/set_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/stl/set_ext.cpp
g++ -o lib/scitbx_random_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp scitbx/random/boost_python/random_ext.o scitbx/random/boost_python/random.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/stl/vector_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/stl/vector_ext.cpp
g++ -o lib/scitbx_minpack_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp scitbx/minpack/ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lscitbx_minpack -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/wigner/ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/wigner/ext.cpp
g++ -o smtbx/ab_initio/ab_initio_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/smtbx/ab_initio/ab_initio_ext.cpp
g++ -o smtbx/array_family/af_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/smtbx/array_family/af_ext.cpp
g++ -o smtbx/refinement/constraints/boost_python/constraints_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/smtbx/refinement/constraints/boost_python/constraints_ext.cpp
g++ -o smtbx/refinement/constraints/boost_python/geometric_hydrogen.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/smtbx/refinement/constraints/boost_python/geometric_hydrogen.cpp
g++ -o smtbx/refinement/boost_python/refinement_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/smtbx/refinement/boost_python/refinement_ext.cpp
g++ -o smtbx/refinement/boost_python/parameter_map.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/smtbx/refinement/boost_python/parameter_map.cpp
g++ -o lib/scitbx_sparse_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp scitbx/sparse/boost_python/vector.o scitbx/sparse/boost_python/matrix.o scitbx/sparse/boost_python/approx_equal.o scitbx/sparse/boost_python/random.o scitbx/sparse/boost_python/lu_factorization.o scitbx/sparse/boost_python/sparse_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o smtbx/refinement/boost_python/minimization.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/smtbx/refinement/boost_python/minimization.cpp
g++ -o smtbx/refinement/boost_python/least_squares_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/smtbx/refinement/boost_python/least_squares_ext.cpp
g++ -o smtbx/refinement/boost_python/weighting_schemes.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/smtbx/refinement/boost_python/weighting_schemes.cpp
g++ -o lib/smtbx_ab_initio_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp smtbx/ab_initio/ab_initio_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lboost_python -lm
g++ -o lib/scitbx_stl_set_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp scitbx/stl/set_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o lib/smtbx_array_family_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp smtbx/array_family/af_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lboost_python -lm
g++ -o smtbx/refinement/boost_python/least_squares.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/smtbx/refinement/boost_python/least_squares.cpp
g++ -o smtbx/stl/map_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/smtbx/stl/map_ext.cpp
g++ -o smtbx/structure_factors/direct/boost_python/ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/smtbx/structure_factors/direct/boost_python/ext.cpp
g++ -o lib/scitbx_wigner_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp scitbx/wigner/ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o smtbx/structure_factors/direct/boost_python/standard_xray.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/smtbx/structure_factors/direct/boost_python/standard_xray.cpp
g++ -o lib/scitbx_math_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp scitbx/math/boost_python/math_ext.o scitbx/math/boost_python/basic_statistics.o scitbx/math/boost_python/gaussian.o scitbx/math/boost_python/golay.o scitbx/math/boost_python/minimum_covering_sphere.o scitbx/math/boost_python/principal_axes_of_inertia.o scitbx/math/boost_python/row_echelon.o scitbx/math/boost_python/tensor_rank_2.o scitbx/math/boost_python/chebyshev.o scitbx/math/boost_python/icosahedron.o scitbx/math/boost_python/slatec.o scitbx/math/boost_python/line_search.o scitbx/math/boost_python/r3_rotation.o scitbx/math/boost_python/resample.o scitbx/math/boost_python/quadrature.o scitbx/math/boost_python/unimodular_generator.o scitbx/math/boost_python/halton.o scitbx/math/boost_python/least_squares_plane.o scitbx/math/boost_python/continued_fraction.o scitbx/math/boost_python/numeric_limits.o scitbx/math/boost_python/distributions.o scitbx/math/boost_python/exp_functions.o scitbx/math/boost_python/zernike.o scitbx/math/boost_python/zernike_moments.o scitbx/math/boost_python/weighted_covariance.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lscitbx_slatec -lscitbx_boost_python -lboost_python -lm
g++ -o lib/std_pair_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp boost_adaptbx/std_pair_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lboost_python -lm
g++ -o mmtbx/masks/tst_mask.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/mmtbx/masks/tst_mask.cpp
g++ -o scitbx/array_family/boost_python/regression_test_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost -I/usr/include/python2.7 /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/boost_python/regression_test_ext.cpp
g++ -o scitbx/array_family/tst_accessors.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iscitbx/array_family -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/tst_accessors.cpp
g++ -o scitbx/array_family/tst_af_1.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iscitbx/array_family -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/tst_af_1.cpp
g++ -o scitbx/array_family/tst_af_2.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iscitbx/array_family -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/tst_af_2.cpp
g++ -o scitbx/array_family/tst_af_3.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iscitbx/array_family -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/tst_af_3.cpp
g++ -o lib/scitbx_stl_vector_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp scitbx/stl/vector_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o lib/smtbx_stl_map_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp smtbx/stl/map_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lboost_python -lm
g++ -o scitbx/array_family/tst_af_4.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iscitbx/array_family -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/tst_af_4.cpp
g++ -o scitbx/array_family/tst_af_5.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iscitbx/array_family -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/tst_af_5.cpp
g++ -o lib/smtbx_refinement_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp smtbx/refinement/boost_python/refinement_ext.o smtbx/refinement/boost_python/parameter_map.o smtbx/refinement/boost_python/minimization.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lboost_python -lm
g++ -o mmtbx/masks/tst_mask -fopenmp mmtbx/masks/tst_mask.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lmmtbx_masks -liotbx_pdb -lcctbx_sgtbx_asu -lcctbx -lomptbx -lm
g++ -o scitbx/array_family/tst_mat3.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iscitbx/array_family -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/tst_mat3.cpp
g++ -o scitbx/array_family/tst_optional_copy.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iscitbx/array_family -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/tst_optional_copy.cpp
g++ -o scitbx/array_family/boost_python/regression_test_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp scitbx/array_family/boost_python/regression_test_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/array_family/tst_af_2 -fopenmp scitbx/array_family/tst_af_2.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib
g++ -o scitbx/array_family/tst_af_3 -fopenmp scitbx/array_family/tst_af_3.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib
g++ -o scitbx/array_family/tst_ref_matrix_facet.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iscitbx/array_family -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/tst_ref_matrix_facet.cpp
g++ -o scitbx/array_family/tst_sym_mat3.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iscitbx/array_family -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/tst_sym_mat3.cpp
g++ -o scitbx/array_family/tst_af_5 -fopenmp scitbx/array_family/tst_af_5.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lm
g++ -o scitbx/array_family/tst_unsigned_float_arithmetic.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iscitbx/array_family -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/tst_unsigned_float_arithmetic.cpp
g++ -o scitbx/array_family/tst_vec3.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iscitbx/array_family -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/tst_vec3.cpp
g++ -o scitbx/array_family/tst_accessors -fopenmp scitbx/array_family/tst_accessors.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib
g++ -o scitbx/array_family/tst_unsigned_float_arithmetic -fopenmp scitbx/array_family/tst_unsigned_float_arithmetic.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib
g++ -o lib/scitbx_stl_map_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp scitbx/stl/map_ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/error/tst_error.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iscitbx/error -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/error -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/error/tst_error.cpp
g++ -o scitbx/fftpack/timing/fftpack_timer.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/fftpack/timing/fftpack_timer.cpp
g++ -o lib/scitbx_rigid_body_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp scitbx/rigid_body/ext.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/array_family/tst_mat3 -fopenmp scitbx/array_family/tst_mat3.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lm
g++ -o scitbx/array_family/tst_ref_matrix_facet -fopenmp scitbx/array_family/tst_ref_matrix_facet.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib
g++ -o scitbx/fftpack/timing/test0.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/fftpack/timing/test0.cpp
g++ -o scitbx/array_family/tst_optional_copy -fopenmp scitbx/array_family/tst_optional_copy.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib
g++ -o scitbx/array_family/tst_vec3 -fopenmp scitbx/array_family/tst_vec3.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lm
g++ -o scitbx/array_family/tst_sym_mat3 -fopenmp scitbx/array_family/tst_sym_mat3.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lm
g++ -o scitbx/fortran_io/tests/tst_numeric_manipulators.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/fortran_io/tests/tst_numeric_manipulators.cpp
g++ -o scitbx/fortran_io/tests/tst_numeric_parsers.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/fortran_io/tests/tst_numeric_parsers.cpp
g++ -o lib/smtbx_refinement_least_squares_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp smtbx/refinement/boost_python/least_squares_ext.o smtbx/refinement/boost_python/weighting_schemes.o smtbx/refinement/boost_python/least_squares.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lboost_python -lm
g++ -o scitbx/error/tst_error -fopenmp scitbx/error/tst_error.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib
g++ -o scitbx/lbfgs/tst_lbfgs.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs.cpp
g++ -o scitbx/lbfgsb/dev/driver1.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/dev/driver1.cpp
g++ -o scitbx/lbfgsb/dev/driver2.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/dev/driver2.cpp
g++ -o scitbx/lbfgsb/dev/driver3.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/dev/driver3.cpp
g++ -o scitbx/array_family/tst_af_1 -fopenmp scitbx/array_family/tst_af_1.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib
g++ -o scitbx/lstbx/tests/tst_normal_equations.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iscitbx/lstbx -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lstbx -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lstbx/tests/tst_normal_equations.cpp
g++ -o lib/smtbx_structure_factors_direct_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp smtbx/structure_factors/direct/boost_python/ext.o smtbx/structure_factors/direct/boost_python/standard_xray.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lboost_python -lm
g++ -o scitbx/fortran_io/tests/tst_numeric_manipulators -fopenmp scitbx/fortran_io/tests/tst_numeric_manipulators.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lm
In file included from /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/dev/driver1.cpp:1:0:
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h: In function 'void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const FloatType&, const FloatType&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<int>&, std::string&, const int&, std::string&, const scitbx::lbfgsb::raw::ref1<bool>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, bool) [with FloatType = double, std::string = std::basic_string<char>]':
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:4433:5:   instantiated from 'void scitbx::lbfgsb::raw::setulb(const int&, const int&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const FloatType&, const FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, std::string&, const int&, std::string&, const scitbx::lbfgsb::raw::ref1<bool>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, bool) [with FloatType = double, std::string = std::basic_string<char>]'
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/dev/driver1.cpp:71:30:   instantiated from here
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:3905:23: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:4433:5:   instantiated from 'void scitbx::lbfgsb::raw::setulb(const int&, const int&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const FloatType&, const FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, std::string&, const int&, std::string&, const scitbx::lbfgsb::raw::ref1<bool>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, bool) [with FloatType = double, std::string = std::basic_string<char>]'
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/dev/driver1.cpp:71:30:   instantiated from here
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:3971:24: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h: In function 'void scitbx::lbfgsb::raw::prn3lb(const int&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const FloatType&, const std::string&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const FloatType&, const FloatType&, const int&, const std::string&, const int&, const FloatType&, const FloatType&, const int&, const FloatType&, const FloatType&, const FloatType&) [with FloatType = double, std::string = std::basic_string<char>]':
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:3786:9:   instantiated from 'void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const FloatType&, const FloatType&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<int>&, std::string&, const int&, std::string&, const scitbx::lbfgsb::raw::ref1<bool>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, bool) [with FloatType = double, std::string = std::basic_string<char>]'
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:4433:5:   instantiated from 'void scitbx::lbfgsb::raw::setulb(const int&, const int&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const FloatType&, const FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, std::string&, const int&, std::string&, const scitbx::lbfgsb::raw::ref1<bool>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, bool) [with FloatType = double, std::string = std::basic_string<char>]'
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/dev/driver1.cpp:71:30:   instantiated from here
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:970:7: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:971:7: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:3786:9:   instantiated from 'void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const FloatType&, const FloatType&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<int>&, std::string&, const int&, std::string&, const scitbx::lbfgsb::raw::ref1<bool>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, bool) [with FloatType = double, std::string = std::basic_string<char>]'
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:4433:5:   instantiated from 'void scitbx::lbfgsb::raw::setulb(const int&, const int&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const FloatType&, const FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, std::string&, const int&, std::string&, const scitbx::lbfgsb::raw::ref1<bool>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, bool) [with FloatType = double, std::string = std::basic_string<char>]'
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/dev/driver1.cpp:71:30:   instantiated from here
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:982:25: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:983:25: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:984:25: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:985:25: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:986:25: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:993:25: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:994:25: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:1005:27: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:1006:27: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:1007:27: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:1008:27: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:1009:27: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:1010:27: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:1011:27: warning: format not a string literal and no format arguments
g++ -o scitbx/math/tests/tst.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iscitbx/math/tests -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/tests -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/tests/tst.cpp
In file included from /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/dev/driver3.cpp:1:0:
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h: In function 'void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const FloatType&, const FloatType&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<int>&, std::string&, const int&, std::string&, const scitbx::lbfgsb::raw::ref1<bool>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, bool) [with FloatType = double, std::string = std::basic_string<char>]':
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:4433:5:   instantiated from 'void scitbx::lbfgsb::raw::setulb(const int&, const int&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const FloatType&, const FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, std::string&, const int&, std::string&, const scitbx::lbfgsb::raw::ref1<bool>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, bool) [with FloatType = double, std::string = std::basic_string<char>]'
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/dev/driver3.cpp:74:30:   instantiated from here
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:3905:23: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:4433:5:   instantiated from 'void scitbx::lbfgsb::raw::setulb(const int&, const int&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const FloatType&, const FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, std::string&, const int&, std::string&, const scitbx::lbfgsb::raw::ref1<bool>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, bool) [with FloatType = double, std::string = std::basic_string<char>]'
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/dev/driver3.cpp:74:30:   instantiated from here
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:3971:24: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h: In function 'void scitbx::lbfgsb::raw::prn3lb(const int&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const FloatType&, const std::string&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const FloatType&, const FloatType&, const int&, const std::string&, const int&, const FloatType&, const FloatType&, const int&, const FloatType&, const FloatType&, const FloatType&) [with FloatType = double, std::string = std::basic_string<char>]':
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:3786:9:   instantiated from 'void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const FloatType&, const FloatType&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<int>&, std::string&, const int&, std::string&, const scitbx::lbfgsb::raw::ref1<bool>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, bool) [with FloatType = double, std::string = std::basic_string<char>]'
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:4433:5:   instantiated from 'void scitbx::lbfgsb::raw::setulb(const int&, const int&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const FloatType&, const FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, std::string&, const int&, std::string&, const scitbx::lbfgsb::raw::ref1<bool>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, bool) [with FloatType = double, std::string = std::basic_string<char>]'
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/dev/driver3.cpp:74:30:   instantiated from here
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:970:7: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:971:7: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:982:25: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:983:25: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:984:25: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:985:25: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:986:25: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:993:25: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:994:25: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:1005:27: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:1006:27: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:1007:27: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:1008:27: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:1009:27: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:1010:27: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:1011:27: warning: format not a string literal and no format arguments
In file included from /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/dev/driver2.cpp:1:0:
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h: In function 'void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const FloatType&, const FloatType&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<int>&, std::string&, const int&, std::string&, const scitbx::lbfgsb::raw::ref1<bool>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, bool) [with FloatType = double, std::string = std::basic_string<char>]':
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:4433:5:   instantiated from 'void scitbx::lbfgsb::raw::setulb(const int&, const int&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const FloatType&, const FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, std::string&, const int&, std::string&, const scitbx::lbfgsb::raw::ref1<bool>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, bool) [with FloatType = double, std::string = std::basic_string<char>]'
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/dev/driver2.cpp:72:30:   instantiated from here
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:3905:23: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:4433:5:   instantiated from 'void scitbx::lbfgsb::raw::setulb(const int&, const int&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const FloatType&, const FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, std::string&, const int&, std::string&, const scitbx::lbfgsb::raw::ref1<bool>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, bool) [with FloatType = double, std::string = std::basic_string<char>]'
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/dev/driver2.cpp:72:30:   instantiated from here
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:3971:24: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h: In function 'void scitbx::lbfgsb::raw::prn3lb(const int&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const FloatType&, const std::string&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const int&, const FloatType&, const FloatType&, const int&, const std::string&, const int&, const FloatType&, const FloatType&, const int&, const FloatType&, const FloatType&, const FloatType&) [with FloatType = double, std::string = std::basic_string<char>]':
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:3786:9:   instantiated from 'void scitbx::lbfgsb::raw::mainlb(const int&, const int&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const FloatType&, const FloatType&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref2<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<int>&, std::string&, const int&, std::string&, const scitbx::lbfgsb::raw::ref1<bool>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, bool) [with FloatType = double, std::string = std::basic_string<char>]'
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:4433:5:   instantiated from 'void scitbx::lbfgsb::raw::setulb(const int&, const int&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const FloatType&, const FloatType&, const scitbx::lbfgsb::raw::ref1<ElementType>&, const scitbx::lbfgsb::raw::ref1<int>&, std::string&, const int&, std::string&, const scitbx::lbfgsb::raw::ref1<bool>&, const scitbx::lbfgsb::raw::ref1<int>&, const scitbx::lbfgsb::raw::ref1<ElementType>&, bool) [with FloatType = double, std::string = std::basic_string<char>]'
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/dev/driver2.cpp:72:30:   instantiated from here
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:970:7: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:971:7: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:982:25: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:983:25: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:984:25: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:985:25: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:986:25: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:993:25: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:994:25: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:1005:27: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:1006:27: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:1007:27: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:1008:27: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:1009:27: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:1010:27: warning: format not a string literal and no format arguments
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/raw.h:1011:27: warning: format not a string literal and no format arguments
g++ -o scitbx/matrix/tests/tst_cholesky.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iscitbx/matrix/tests -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/matrix/tests -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/matrix/tests/tst_cholesky.cpp
g++ -o scitbx/lbfgs/tst_lbfgs -fopenmp scitbx/lbfgs/tst_lbfgs.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lm
g++ -o scitbx/matrix/tests/tst_givens.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iscitbx/matrix/tests -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/matrix/tests -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/matrix/tests/tst_givens.cpp
g++ -o scitbx/matrix/tests/tst_householder.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iscitbx/matrix/tests -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/matrix/tests -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/matrix/tests/tst_householder.cpp
g++ -o scitbx/math/tests/tst -fopenmp scitbx/math/tests/tst.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib
g++ -o scitbx/matrix/tests/tst_svd.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iscitbx/matrix/tests -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/matrix/tests -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/matrix/tests/tst_svd.cpp
g++ -o scitbx/serialization/tst_base_256.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Winit-self -DNDEBUG -O2 -pipe -fno-associative-math -ftrapping-math -DBOOST_ALL_NO_LIB -DBOOST_DISABLE_THREADS -fopenmp -Iscitbx/serialization -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/serialization -Iinclude -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/include -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources -I/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/boost /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/serialization/tst_base_256.cpp
g++ -o scitbx/fftpack/timing/fftpack_timer -fopenmp scitbx/fftpack/timing/fftpack_timer.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lomptbx -lm
g++ -o scitbx/lbfgsb/dev/driver1 -fopenmp scitbx/lbfgsb/dev/driver1.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lm
g++ -o scitbx/fftpack/timing/test0 -fopenmp scitbx/fftpack/timing/test0.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lomptbx -lm
g++ -o scitbx/matrix/tests/tst_givens -fopenmp scitbx/matrix/tests/tst_givens.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib
g++ -o scitbx/serialization/tst_base_256 -fopenmp scitbx/serialization/tst_base_256.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lm
g++ -o scitbx/lbfgsb/dev/driver2 -fopenmp scitbx/lbfgsb/dev/driver2.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lm
g++ -o scitbx/lstbx/tests/tst_normal_equations -fopenmp scitbx/lstbx/tests/tst_normal_equations.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib
g++ -o scitbx/lbfgsb/dev/driver3 -fopenmp scitbx/lbfgsb/dev/driver3.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lm
g++ -o scitbx/fortran_io/tests/tst_numeric_parsers -fopenmp scitbx/fortran_io/tests/tst_numeric_parsers.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lm
g++ -o scitbx/matrix/tests/tst_cholesky -fopenmp scitbx/matrix/tests/tst_cholesky.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib
g++ -o scitbx/matrix/tests/tst_householder -fopenmp scitbx/matrix/tests/tst_householder.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib
g++ -o scitbx/matrix/tests/tst_svd -fopenmp scitbx/matrix/tests/tst_svd.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib
g++ -o scitbx/array_family/tst_af_4 -fopenmp scitbx/array_family/tst_af_4.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lm
g++ -o lib/smtbx_refinement_constraints_ext.so -shared -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -fopenmp -fopenmp smtbx/refinement/constraints/boost_python/constraints_ext.o smtbx/refinement/constraints/boost_python/geometric_hydrogen.o -Llib -L/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/lib -lcctbx -lboost_python -lm
scons: done building targets.
usr+sys time: 87.18 seconds
wall clock time: 5 minutes 37.30 seconds (337.30 seconds total)
>>> Source compiled.
OK
/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_build/scitbx/array_family/tst_af_1
Total OK: 511

/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_build/scitbx/array_family/tst_af_2
Total OK: 268

/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_build/scitbx/array_family/tst_af_3
Total OK: 164

/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_build/scitbx/array_family/tst_af_4
Total OK: 1420

/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_build/scitbx/array_family/tst_af_5
Total OK: 23

/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_build/scitbx/array_family/tst_vec3
Total OK: 83

/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_build/scitbx/array_family/tst_unsigned_float_arithmetic
OK

/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_build/scitbx/array_family/tst_mat3
Total OK: 127

/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_build/scitbx/array_family/tst_sym_mat3
Total OK: 90

/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_build/scitbx/array_family/tst_ref_matrix_facet
OK

/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_build/scitbx/array_family/tst_accessors
Total OK: 1730

/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_build/scitbx/array_family/tst_optional_copy
OK

/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_build/scitbx/serialization/tst_base_256
OK

/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_build/scitbx/math/tests/tst
copysign(3.f, +0.f) = 3 instead of 0.f as per C99
copysign(3.f, -0.f) = -3 instead of -0.f as per C99
OK

/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_build/scitbx/matrix/tests/tst_givens
OK

/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_build/scitbx/matrix/tests/tst_householder
OK

/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_build/scitbx/matrix/tests/tst_svd
OK

/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_build/scitbx/matrix/tests/tst_cholesky
OK

/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_build/scitbx/lstbx/tests/tst_normal_equations
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/linalg/tests/tst_matrix.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/linalg/tests/tst_cholesky.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/linalg/tests/tst_svd.py
Densely distributed singular values: 4 done.
Scaling with m and m/n:  34 done
u+s,u,s: 8.17 8.10 0.07

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/linalg/tests/tst_eigensystem.py
time_eigensystem_real_symmetric: 3.423 micro seconds
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/error/tst_error.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/stl/tst_map.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/stl/tst_set.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/stl/tst_vector.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/boost_python/regression_test.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/boost_python/tst_flex.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/boost_python/tst_smart_selection.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/boost_python/tst_shared.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/boost_python/tst_integer_offsets_vs_pointers.py
data_size = 1000 n_repeats = 30000
  use_pointers = False
    use_iterators = 0 time = 0.13 s overhead = 0.00 s (d[p[i]] 0)
    use_iterators = 1 time = 0.12 s overhead = 0.00 s (d[*p++] 0)
  use_pointers = True
    use_iterators = 0 time = 0.12 s overhead = 0.00 s (*dp[i]  0)
    use_iterators = 1 time = 0.12 s overhead = 0.00 s (**dpi++ 0)
    use_iterators = 2 time = 0.12 s overhead = 0.00 s (**dpp++ 0)
data_size = 10000 n_repeats = 3000
  use_pointers = False
    use_iterators = 0 time = 0.14 s overhead = 0.00 s (d[p[i]] 1.59869e-11)
    use_iterators = 1 time = 0.13 s overhead = 0.00 s (d[*p++] 1.59869e-11)
  use_pointers = True
    use_iterators = 0 time = 0.13 s overhead = 0.00 s (*dp[i]  1.59869e-11)
    use_iterators = 1 time = 0.13 s overhead = 0.00 s (**dpi++ 1.59869e-11)
    use_iterators = 2 time = 0.13 s overhead = 0.00 s (**dpp++ 1.59869e-11)
data_size = 100000 n_repeats = 300
  use_pointers = False
    use_iterators = 0 time = 0.37 s overhead = 0.00 s (d[p[i]] 4.47702e-11)
    use_iterators = 1 time = 0.37 s overhead = 0.00 s (d[*p++] 4.47702e-11)
  use_pointers = True
    use_iterators = 0 time = 0.37 s overhead = 0.00 s (*dp[i]  4.47702e-11)
    use_iterators = 1 time = 0.37 s overhead = 0.00 s (**dpi++ 4.47702e-11)
    use_iterators = 2 time = 0.37 s overhead = 0.00 s (**dpp++ 4.47702e-11)
data_size = 1000000 n_repeats = 30
  use_pointers = False
    use_iterators = 0 time = 1.31 s overhead = 0.01 s (d[p[i]] -9.89152e-11)
    use_iterators = 1 time = 1.32 s overhead = 0.01 s (d[*p++] -9.89152e-11)
  use_pointers = True
    use_iterators = 0 time = 1.31 s overhead = 0.01 s (*dp[i]  -9.89152e-11)
    use_iterators = 1 time = 1.31 s overhead = 0.01 s (**dpi++ -9.89152e-11)
    use_iterators = 2 time = 1.32 s overhead = 0.01 s (**dpp++ -9.89152e-11)
data_size = 10000000 n_repeats = 3
  use_pointers = False
    use_iterators = 0 time = 1.94 s overhead = 0.12 s (d[p[i]] 5.2638e-10)
    use_iterators = 1 time = 1.94 s overhead = 0.12 s (d[*p++] 5.2638e-10)
  use_pointers = True
    use_iterators = 0 time = 1.94 s overhead = 0.12 s (*dp[i]  5.2638e-10)
    use_iterators = 1 time = 1.94 s overhead = 0.12 s (**dpi++ 5.2638e-10)
    use_iterators = 2 time = 1.93 s overhead = 0.12 s (**dpp++ 5.2638e-10)
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/array_family/boost_python/tst_cost_of_m_handle_in_af_shared.py
Loop over af::shared<double>:
data_size=1000, n_repeats=30000
size+begin inside  loop: 0.15 s
     begin outside loop: 0.12 s
size+begin outside loop: 0.09 s

data_size=10000, n_repeats=3000
size+begin inside  loop: 0.16 s
     begin outside loop: 0.12 s
size+begin outside loop: 0.10 s

data_size=100000, n_repeats=300
size+begin inside  loop: 0.16 s
     begin outside loop: 0.14 s
size+begin outside loop: 0.12 s

data_size=1000000, n_repeats=30
size+begin inside  loop: 0.21 s
     begin outside loop: 0.19 s
size+begin outside loop: 0.18 s

data_size=10000000, n_repeats=3
size+begin inside  loop: 0.26 s
     begin outside loop: 0.19 s
size+begin outside loop: 0.18 s

OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/matrix.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/python_utils/tst_random_transform.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/python_utils/tst_graph.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/tests/tst_exp_functions.py
showing wall clock times!
jacks_expf(): 0.11 s
std::exp(float): 0.17 s
std::exp(double): 0.07 s
u+s,u,s: 0.49 0.43 0.06

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/tests/tst_fit_quadratic_function.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/tests/tst_gcd.py
compare_with_boost_rational_gcd(gcd_int_simple)
compare_with_boost_rational_gcd(gcd_long_simple)
compare_with_boost_rational_gcd(gcd_long_binary)
gcd_int_boost            999 w=0.12 u+s=0.13
gcd_int_simple           999 w=0.10 u+s=0.10
gcd_long_boost           999 w=0.12 u+s=0.13
gcd_long_simple          999 w=0.10 u+s=0.10
gcd_unsigned_long_binary 999 w=0.11 u+s=0.11
gcd_long_binary          999 w=0.12 u+s=0.12
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/tests/tst_math.py
Floating point type 'double':
	radix:  2
	mantissa digits (base 2): 53
	mantissa digits (base 10): 15
	min exponent (base 2): -1021
	min exponent (base 10): -307
	max exponent (base 2): 1024
	max exponent (base 10): 308
	min: 2.22507385851e-308
	max: 1.79769313486e+308
	epsilon: 2.22044604925e-16
	safe min: 4.45014771701e-308
Testing compatibility of cmath_lgamma and slatec_dlngam... OK
unimodular range 0: count=0, time=0.01 s
unimodular range 1: count=3480, time=0.00 s
unimodular range 2: count=67704, time=0.00 s
unimodular range 3: count=640824, time=0.14 s
unimodular range 4: count=2597208, time=0.99 s
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/tests/tst_r3_rotation.py
times unit quaternion <-> matrix
     py: 0.33 0.22 s
    c++: 0.10 0.10 s
  ratio: 3.43 2.19
u+s,u,s: 15.11 15.05 0.06

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/tests/tst_resample.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/tests/tst_line_search.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/tests/tst_gaussian.py
u+s,u,s: 21.60 21.52 0.08

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/tests/tst_quadrature.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/tests/tst_bessel.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/tests/tst_halton.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/tests/tst_euler_angles.py
u+s,u,s: 3.63 3.58 0.05

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/tests/tst_superpose.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/sieve_of_eratosthenes.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/besselk.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/scale_curves.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/tests/tst_fit_peak.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/math/tests/tst_clustering.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/minpack/tst.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_ext.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py
Skipping some tests: lbfgs.f not linked into scitbx_lbfgs_ext.
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw_reference 2 6 -1 0
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw 2 6 -1 0
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw_reference 14 3 -1 1
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw 14 3 -1 1
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw_reference 4 4 -1 2
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw 4 4 -1 2
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw_reference 2 3 -1 3
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw 2 3 -1 3
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw_reference 14 5 0 0
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw 14 5 0 0
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw_reference 2 5 0 1
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw 2 5 0 1
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw_reference 14 6 0 2
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw 14 6 0 2
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw_reference 4 3 0 3
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw 4 3 0 3
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw_reference 2 7 1 0
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw 2 7 1 0
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw_reference 2 7 1 1
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw 2 7 1 1
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw_reference 14 6 1 2
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw 14 6 1 2
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw_reference 2 6 1 3
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw 2 6 1 3
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw_reference 14 2 2 0
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw 14 2 2 0
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw_reference 14 5 2 1
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw 14 5 2 1
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw_reference 2 7 2 2
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw 2 7 2 2
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw_reference 14 7 2 3
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw 14 7 2 3
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw_reference 14 6 3 0
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw 14 6 3 0
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw_reference 4 2 3 1
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw 4 2 3 1
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw_reference 4 4 3 2
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw 4 4 3 2
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw_reference 2 6 3 3
scitbx.python "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgs/tst_lbfgs_f.py" raw 2 6 3 3
usr+sys time: 0.31 seconds
wall clock time: 10.47 seconds
OK

/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_build/scitbx/lbfgs/tst_lbfgs
n: 100
m: 5
xtol: 1e-16
f: 254.065 gnorm: 325.365
 1 2 0.000607303
f: 207.819 gnorm: 54.5204
 2 3 1
f: 206.329 gnorm: 12.6873
 3 4 1
f: 206.158 gnorm: 12.9705
 4 5 1
f: 204.568 gnorm: 36.0649
 5 6 1
f: 201.009 gnorm: 69.9702
 6 7 1
f: 132.076 gnorm: 99.1014
 7 11 2.30835
f: 131.557 gnorm: 80.1033
 8 13 0.152436
f: 120.196 gnorm: 66.244
 9 15 5
f: 105.948 gnorm: 116.627
 10 16 1
f: 87.4002 gnorm: 17.1325
 11 17 1
f: 72.7773 gnorm: 32.6968
 12 18 1
f: 67.7306 gnorm: 49.5851
 13 20 0.213662
f: 60.0913 gnorm: 52.8678
 14 21 1
f: 45.9493 gnorm: 28.0796
 15 22 1
f: 37.3669 gnorm: 39.3487
 16 23 1
f: 23.0492 gnorm: 14.5867
 17 24 1
f: 19.8468 gnorm: 17.9762
 18 26 0.156708
f: 17.6677 gnorm: 48.6045
 19 27 1
f: 13.9465 gnorm: 22.2498
 20 28 1
f: 9.11604 gnorm: 28.0105
 21 29 1
f: 5.82159 gnorm: 10.2151
 22 30 1
f: 4.75971 gnorm: 28.511
 23 32 0.436181
f: 2.35807 gnorm: 22.65
 24 33 1
f: 1.55734 gnorm: 15.4752
 25 34 1
f: 0.810498 gnorm: 2.3865
 26 36 0.404632
f: 0.508703 gnorm: 9.94499
 27 38 0.247512
f: 0.363447 gnorm: 15.2129
 28 39 1
f: 0.167247 gnorm: 9.7728
 29 40 1
f: 0.0372373 gnorm: 1.32586
 30 41 1
f: 0.0098316 gnorm: 4.14194
 31 42 1
f: 0.000471098 gnorm: 0.567595
 32 43 1
f: 3.2788e-06 gnorm: 0.027547
 33 44 1
f: 2.34044e-08 gnorm: 0.00607363
 34 45 1
f: 2.09469e-13 gnorm: 1.31535e-05
 35 46 1

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/lbfgsb/boost_python/tst_lbfgsb.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/fftpack/boost_python/tst_fftpack.py
usr+sys time: 2.84 seconds
wall clock time: 2.26 seconds

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/examples/flex_grid.py
grid = grid over N-dim box (but there is no array with data!)

origin = N-dim indices of lower-left corner of box
 focus = N-dim indices of upper-right corner of box as we want to use it
  last = N-dim indices of upper-right corner of box as actually allocated
   all = actual number or grid points to be allocated in each dimension

Motivation for focus/last distinction:
  padding required by real-to-complex FFT algorithms

origin: (0, 0, 0)
 focus: (3, 4, 6)
  last: (3, 4, 6)
   all: (3, 4, 6)

origin: (0, 0, 0)
 focus: (3, 4, 5)
  last: (3, 4, 6)
   all: (3, 4, 6)

origin: (-2, -3, -4)
 focus: (3, 4, 6)
  last: (3, 4, 6)
   all: (5, 7, 10)

origin: (-2, -3, -4)
 focus: (3, 4, 5)
  last: (3, 4, 6)
   all: (5, 7, 10)

OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/examples/flex_array_loops.py
10.0
11.0
12.0

10.0
11.0
12.0

0 10.0
1 11.0
2 12.0

100.0
110.0
120.0

200.0
210.0
220.0

OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/examples/principal_axes_of_inertia.py
(7.796692307692308, 1.365076923076923, 8.357692307692307)
(38.14003769230771, 97.02526753846155, 79.02221969230769, -19.808558307692305, 35.14258523076924, 7.6620366923076935)
[104.22746487361262, 97.2664259137753, 12.693634135688997]
[-0.4390539716746839, 0.8222124337102901, -0.3622130917138249, 0.3037216796237081, 0.5152398514117881, 0.801424379990846, 0.8455677094610694, 0.24185658843488295, -0.4759418445014056]

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/examples/lbfgs_recipe.py
refinery
compute_functional_and_gradients
callback_after_step
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/examples/lbfgs_linear_least_squares_fit.py
fit.slope: -3.14482203441
fit.y_intercept: 1.81041362307
 x_obs  y_obs y_calc  diff
  1.00  -1.33  -1.33   0.00
  2.00  -4.48  -4.48   0.00
  3.00  -7.62  -7.62   0.01
  4.00 -10.79 -10.77  -0.02
  5.00 -13.90 -13.91   0.01
  6.00 -17.09 -17.06  -0.04
  7.00 -20.18 -20.20   0.03
  8.00 -23.31 -23.35   0.03
  9.00 -26.53 -26.49  -0.03
 10.00 -29.63 -29.64   0.01

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/examples/chebyshev_lsq_example.py
Trying to determine the best number of terms 
 via cross validation techniques

Fitting with 14 terms

Least Squares residual: 1.832070
  R2-value            : 0.005245

Maximum deviation between fitted and error free data:
    0.172
Mean deviation between fitted and error free data:
    0.051

Maximum deviation between fitted and observed data:
    0.312
Mean deviation between fitted and observed data:
    0.114

Showing 10 points
   x    y_obs y_ideal y_fit
 0.010  1.083  1.195  1.067
 0.099  2.274  2.061  2.147
 0.188  0.755  0.814  0.841
 0.277  0.229  0.448  0.495
 0.366  2.216  2.025  1.995
 0.455  2.332  2.322  2.285
 0.545  1.093  0.980  0.957
 0.634  1.305  1.301  1.270
 0.723  2.788  2.931  2.868
 0.812  2.466  2.646  2.712
Preparing output for loggraph in a file called
   chebyshev.loggraph

Coefficients from weighted lsq
[5.862559122088651, -3.072347897862096, 0.5291477863286371, 0.04859889770710211, -0.07681635442130007]
Coefficients from non-weighted lsq
[5.041615262416667, -2.374280940495506, -0.7077805017754613, 1.2543961953228493, -1.7154461796956366]

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/examples/immoptibox_ports.py
Skipping: exercise_lbfgsb() with meyer_function
u+s,u,s: 20.87 20.81 0.06

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/examples/rigid_body_refinement_core.py
an ea: [0.0, 0.0, 0.0]
fd ea: [2.9856131013692537e-15, 8.482503931338843e-16, 3.956637514388412e-15]
an lt: [-0.0, -0.0, -0.0]
fd lt: [0.0, 0.0, 0.0]

an ea: [1.4293798315070356, -4.769919933605615, -3.2848275925326007]
fd ea: [1.4293798318298911, -4.769919932812172, -3.2848275934860283]
an lt: [-2.639537038169898, 3.854677925482285, -3.7648774634679576]
fd lt: [-2.6395370364973303, 3.8546779261849906, -3.764877463563465]

an ea: [-4.386454471339836, 2.1848899436111213, 5.080215807623555]
fd ea: [-4.386454477867119, 2.1848899400822575, 5.080215812469646]
an lt: [-4.688132824683539, -10.874759921610845, -1.939331654320938]
fd lt: [-4.688132825947378, -10.874759922785415, -1.9393316534888072]

an ea: [-5.0974589936941435, 2.0225151159319164, 4.479103261227717]
fd ea: [-5.09745900068026, 2.022515113608847, 4.479103266064044]
an lt: [-2.8154365578392664, -5.157085781215162, -17.014046644874657]
fd lt: [-2.8154365576682494, -5.157085780638226, -17.0140466462243]

OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/examples/integrating_a_weighted_sinc_function.py
0.001 0 11.2173920011 19.0520654828 3.74757114613 1.82973556619 0.724225068979 0.075628347417 0.0674822688467 0.00098051901149 0.00411577335464 0.000399910519581 0.000204867708532 2.00702451931e-05 7.14670584216e-07 5.34707138194e-06 2.69191682876e-06 1.63726782219e-06 1.16798157906e-06 8.23709701181e-07 5.85888171056e-07 4.24017201949e-07 3.11226703003e-07 2.31324447532e-07 1.73962515835e-07 1.32254359682e-07 1.01564908556e-07 7.87322080323e-08 6.15689171954e-08 4.85424572116e-08 3.8566197919e-08 3.08610181589e-08 2.48624527512e-08 2.01574028674e-08 1.6440813383e-08 1.3485408371e-08 1.11204095447e-08 9.21653546253e-09 7.67520738206e-09 6.42061797288e-09 5.3942393018e-09 4.5503970871e-09 3.85345165896e-09 3.27525644209e-09 2.79355124928e-09 2.39060388417e-09 2.05223151095e-09 1.76702651399e-09 1.52580145382e-09 1.32104862952e-09 1.14670637592e-09 9.97764690274e-10 8.70148380818e-10 7.60497970485e-10 6.66009026239e-10 5.84359126977e-10 5.13620224986e-10 4.52200220263e-10 3.98711502714e-10 3.52029377841e-10 3.11233641053e-10 2.75433300607e-10 2.44000280355e-10 2.16335716991e-10 1.91942992166e-10 1.70369306798e-10 1.51264106756e-10 1.34335263599e-10 1.19290648887e-10 1.05896559867e-10 9.39631130513e-11 8.32858185323e-11 7.37624313553e-11 6.52176744558e-11 5.75493028792e-11 5.06696780934e-11 4.4476555144e-11 3.88969019206e-11 3.38576863132e-11 2.93004826334e-11 2.51960780372e-11 2.14714404143e-11 1.80827504986e-11 1.5015401868e-11 1.22401816784e-11 9.69866424157e-12 7.39084955758e-12 5.30213120435e-12 3.37408349368e-12 1.60670642556e-12
0.01 1 11.2093348611 19.0951802817 3.77341506294 1.83371367635 0.729978611614 0.0754015744668 0.0680959867142 0.00105322796523 0.00415918176735 0.000406823292263 0.000206806576233 2.06701909467e-05 8.69829192071e-07 5.32370055544e-06 2.66341640026e-06 1.61573104533e-06 1.15389385297e-06 8.1397675731e-07 5.78977867607e-07 4.19047075916e-07 3.07601142661e-07 2.28643639293e-07 1.71955700568e-07 1.30734947053e-07 1.00402360423e-07 7.78340027708e-08 6.0868610558e-08 4.79918043118e-08 3.81297791662e-08 3.05125753198e-08 2.45823162076e-08 1.99306985172e-08 1.62562338281e-08 1.33342455873e-08 1.0995924435e-08 9.11351080509e-09 7.58949854964e-09 6.34902003263e-09 5.33414599728e-09 4.49974670984e-09 3.81060507063e-09 3.23886849269e-09 2.76254654111e-09 2.36408221767e-09 2.02948294825e-09 1.74745157038e-09 1.50891500445e-09 1.30643509263e-09 1.1340171216e-09 9.86726867861e-10 8.60543307482e-10 7.52093493652e-10 6.58652556679e-10 5.77908039578e-10 5.07959898076e-10 4.47202668408e-10 3.9431073829e-10 3.48149972767e-10 3.07792443242e-10 2.72413324294e-10 2.41320351729e-10 2.13953822584e-10 1.89827679021e-10 1.6850005028e-10 1.49602710725e-10 1.32855808874e-10 1.17979493247e-10 1.04738099435e-10 9.29254210852e-11 8.23647098919e-11 7.29381336525e-11 6.45131311385e-11 5.69276830709e-11 5.0122873348e-11 4.3980869767e-11 3.84574852518e-11 3.34790746753e-11 2.89867219362e-11 2.4921510933e-11 2.12392545894e-11 1.78957658295e-11 1.48468575771e-11 1.20925298321e-11 9.60332454391e-12 7.30559658555e-12 5.24353303318e-12 3.32875973455e-12 1.5907347404e-12
0.02 2 11.2024462837 19.2303893342 3.85007658789 1.84690024763 0.747450820648 0.0748113719331 0.0699746311997 0.00126974921575 0.00429247242553 0.000427840412261 0.000212800456408 2.24940421971e-05 1.33848654584e-06 5.25755417871e-06 2.57950499466e-06 1.55197943029e-06 1.11227020713e-06 7.8522852513e-07 5.585642313e-07 4.04365017294e-07 2.96891305153e-07 2.20724688718e-07 1.66027800408e-07 1.26246856796e-07 9.69684454712e-08 7.51808795004e-08 5.88000768425e-08 4.63653490908e-08 3.68407735923e-08 2.94833992857e-08 2.37548853944e-08 1.9261103322e-08 1.57110302898e-08 1.28877588507e-08 1.06282836173e-08 8.80920996455e-09 7.33642078733e-09 6.13753806792e-09 5.15665050522e-09 4.35017417496e-09 3.68405772003e-09 3.13139543189e-09 2.6709618639e-09 2.28577665873e-09 1.96230387319e-09 1.68965130297e-09 1.45902662783e-09 1.26325398502e-09 1.09656247018e-09 9.54163139127e-10 8.32143258273e-10 7.27300126773e-10 6.36944684482e-10 5.58871297797e-10 4.91221795944e-10 4.32485470977e-10 3.81332899902e-10 3.36706587157e-10 2.97669893815e-10 2.63452358822e-10 2.33389270683e-10 2.06936774537e-10 1.83596336761e-10 1.62960066209e-10 1.44695607134e-10 1.28500817945e-10 1.14103771213e-10 1.01308074905e-10 8.98871228278e-11 7.96747371082e-11 7.05500611102e-11 6.23922381981e-11 5.50501975772e-11 4.84786180091e-11 4.25415357787e-11 3.72087367269e-11 3.23895783769e-11 2.80387394905e-11 2.41108988291e-11 2.05305209955e-11 1.7312713069e-11 1.4366832573e-11 1.17079865868e-11 9.29085387212e-12 7.07011319049e-12 5.07597870086e-12 3.21780792644e-12 1.54092210562e-12
0.05 3 11.9711523604 20.3931400518 4.31062734009 1.99317327405 0.871836446872 0.0753897251298 0.0840557851812 0.00259108481785 0.00531181755047 0.000577025248755 0.000260520754764 3.55128794545e-05 4.58085899105e-06 4.99884598141e-06 2.09946687567e-06 1.17120774317e-06 8.67198486743e-07 6.1639083575e-07 4.38561284688e-07 3.1806750265e-07 2.3395843194e-07 1.74199844303e-07 1.31206062673e-07 9.9886639363e-08 7.6802478295e-08 5.96021789479e-08 4.66552899248e-08 3.68169920255e-08 2.92741080612e-08 2.34425690718e-08 1.88985410785e-08 1.53314266727e-08 1.25116122667e-08 1.02677630243e-08 8.47101233509e-09 7.02377171708e-09 5.85146458289e-09 4.89680485115e-09 4.1154291986e-09 3.4727205162e-09 2.94171427792e-09 2.50100490957e-09 2.1337170217e-09 1.82638639985e-09 1.5682200142e-09 1.35057261175e-09 1.16642330856e-09 1.01006876445e-09 8.76924649033e-10 7.63146622246e-10 6.65648382921e-10 5.81848989144e-10 5.0961871262e-10 4.472068445e-10 3.9311535556e-10 3.46134993293e-10 3.05236990644e-10 2.6951892037e-10 2.3831298631e-10 2.1093334376e-10 1.86874633463e-10 1.65703690345e-10 1.47023446416e-10 1.30509027871e-10 1.15889706535e-10 1.02930851327e-10 9.13978311627e-11 8.11462576832e-11 7.199564544e-11 6.38196546191e-11 5.65280424964e-11 4.99944692576e-11 4.41106436338e-11 3.88404685352e-11 3.40937012374e-11 2.9816196106e-11 2.59538075063e-11 2.24704383486e-11 1.93299915433e-11 1.64602729108e-11 1.38793309961e-11 1.15149716196e-11 9.38524332634e-12 7.4540490265e-12 5.66724308552e-12 4.07897113799e-12 2.58094191474e-12 1.22730105037e-12
0.1 4 31.7314773526 29.3192205261 4.43982852838 3.72950213937 1.38694328514 0.18903996324 0.157970301961 0.00214147076026 0.0111584314473 0.00108186301035 0.00057310908429 8.66623148042e-05 1.78361266222e-05 7.47881793948e-06 2.16498409124e-06 8.42864849028e-07 7.28281650475e-07 5.31543139284e-07 3.76409192631e-07 2.73941737371e-07 2.02356438728e-07 1.51155148941e-07 1.14168096461e-07 8.71336903735e-08 6.71462671853e-08 5.22123104374e-08 4.09436679929e-08 3.23617314696e-08 2.57689977259e-08 2.06628293811e-08 1.66775355755e-08 1.35443894515e-08 1.10642627198e-08 9.0882567289e-09 7.50421582441e-09 6.22694058328e-09 5.19131661753e-09 4.34719953988e-09 3.65574918908e-09 3.08658226079e-09 2.61598204546e-09 2.22515931674e-09 1.8992463746e-09 1.62637633924e-09 1.39703524666e-09 1.20358464548e-09 1.03985239419e-09 9.00757558622e-10 7.82259261586e-10 6.80964530263e-10 5.94128296191e-10 5.19465844001e-10 4.55084610963e-10 3.99450086758e-10 3.51215312324e-10 3.09289080322e-10 2.72801834904e-10 2.40918120449e-10 2.1305823306e-10 1.88608368606e-10 1.67125224108e-10 1.48216646926e-10 1.31524584653e-10 1.16759185339e-10 1.03698797493e-10 9.21047195093e-11 8.1789400127e-11 7.26334885431e-11 6.4449433496e-11 5.71519844123e-11 5.06047403746e-11 4.47736011536e-11 3.9505115717e-11 3.47992840649e-11 3.05367553945e-11 2.67175297059e-11 2.32563564255e-11 2.01361854388e-11 1.73058664017e-11 1.47483491995e-11 1.24295336028e-11 1.03153193823e-11 8.40570653797e-12 6.68364495514e-12 5.08093417508e-12 3.64872454184e-12 2.31881559668e-12 1.1082574543e-12
0.15 5 170.80379726 76.0330790021 4.52110067608 15.2330347799 2.99119867454 1.22939033433 0.487153737869 0.0418924882248 0.0407460295178 0.00128207835805 0.00235466010373 0.000216961775095 8.01330688976e-05 2.744691435e-05 9.97911913157e-06 3.90897374849e-06 3.20000580882e-06 2.33081460742e-06 1.64554515234e-06 1.19245554316e-06 8.77706548152e-07 6.53601376432e-07 4.92318488193e-07 3.74829328523e-07 2.88224565044e-07 2.23688205129e-07 1.75107047173e-07 1.38188041976e-07 1.09881038915e-07 8.79952549738e-08 7.09406838008e-08 5.75521609212e-08 4.69680866339e-08 3.85455034223e-08 3.18011457823e-08 2.6368515338e-08 2.19678448711e-08 1.83840292072e-08 1.54506571592e-08 1.30379925605e-08 1.10444694141e-08 9.38996127139e-09 8.01103087853e-09 6.85722146617e-09 5.88797760471e-09 5.07082518921e-09 4.37943695802e-09 3.79245348928e-09 3.29254457683e-09 2.86537903302e-09 2.49929273627e-09 2.18464761948e-09 1.91348827098e-09 1.679118409e-09 1.47606654176e-09 1.29965099534e-09 1.14608293339e-09 1.01203138498e-09 8.94783497497e-10 7.91969817383e-10 7.01655863242e-10 6.22136086382e-10 5.52013997273e-10 4.90030466008e-10 4.35109508851e-10 3.8643841468e-10 3.43181579103e-10 3.04686543896e-10 2.70335190743e-10 2.39669654223e-10 2.12232068915e-10 1.87667589119e-10 1.656099225e-10 1.45830136345e-10 1.27984831592e-10 1.11936648612e-10 9.74452080619e-11 8.43502570431e-11 7.251443593e-11 6.17889384609e-11 5.20592982809e-11 4.32339423058e-11 3.52212974517e-11 2.79183439989e-11 2.12564021345e-11 1.52240252229e-11 9.70674690902e-12 4.61299410888e-12
0.2 6 548.676168215 187.819325331 43.5050245097 52.2547527845 6.70044476617 5.32453283046 1.60515108222 0.261882698632 0.157550003965 0.00164833653798 0.010051512848 0.000653068599577 0.00041287654069 8.96029527126e-05 3.25883137168e-05 8.27145839788e-06 7.73080361259e-06 5.86680300921e-06 4.1119193439e-06 2.98071850871e-06 2.19934856011e-06 1.64037046546e-06 1.23720750843e-06 9.43074594971e-07 7.25942482181e-07 5.63926506382e-07 4.4182310135e-07 3.48934331623e-07 2.7764635624e-07 2.22482827708e-07 1.79463336515e-07 1.45667768888e-07 1.18934140733e-07 9.76477652659e-08 8.05937093464e-08 6.68497425893e-08 5.57115607101e-08 4.66371004648e-08 3.92067067602e-08 3.3093197997e-08 2.80399549806e-08 2.38449037804e-08 2.03474980533e-08 1.74202605534e-08 1.49607895591e-08 1.28866297883e-08 1.11313281026e-08 9.64092413374e-09 8.3712207707e-09 7.28613445425e-09 6.35603047408e-09 5.55649318827e-09 4.86730620538e-09 4.27164252896e-09 3.75543466999e-09 3.30690972989e-09 2.9163944353e-09 2.57552027997e-09 2.27728351403e-09 2.01574519757e-09 1.78600120595e-09 1.58373231014e-09 1.40527916331e-09 1.24756731424e-09 1.10785225282e-09 9.8394436988e-10 8.73879016104e-10 7.7587151005e-10 6.88377127446e-10 6.10346055679e-10 5.40473527645e-10 4.77919693253e-10 4.21799710445e-10 3.71378710391e-10 3.25996810878e-10 2.85114108276e-10 2.48175701634e-10 2.14821655197e-10 1.8472202786e-10 1.57366910638e-10 1.32636324948e-10 1.10140340391e-10 8.97289837366e-11 7.11173058464e-11 5.41703308134e-11 3.87680800533e-11 2.47155883667e-11 1.17579012618e-11
0.3 7 609.918211316 1566.00120598 1443.74414653 340.737135978 159.268613247 101.584433092 4.17713127614 9.89216083591 2.00565194193 0.48644543077 0.20031485694 0.00870635153442 0.0115701871721 0.00088974680956 0.000658560137219 3.98343002656e-05 5.78357267439e-05 5.51399006464e-05 3.73142397284e-05 2.67209826816e-05 1.97584503828e-05 1.47272859363e-05 1.10953845822e-05 8.45070548853e-06 6.50036582698e-06 5.04630039587e-06 3.95131108005e-06 3.11890814591e-06 2.48049596573e-06 1.98677592102e-06 1.60195592945e-06 1.2997975776e-06 1.0608872246e-06 8.7073909229e-07 7.18455332416e-07 5.9577366818e-07 4.96384819006e-07 4.15436444466e-07 3.49171751125e-07 2.94665572812e-07 2.4962434432e-07 2.12240495586e-07 1.81082026464e-07 1.5500795245e-07 1.33103986602e-07 1.1463576275e-07 9.90088857692e-08 8.57413783528e-08 7.44409132595e-08 6.47848384491e-08 5.65096915042e-08 4.93971045294e-08 4.32661931235e-08 3.79678399429e-08 3.33772796656e-08 2.93896401707e-08 2.59165453415e-08 2.28857067481e-08 2.02345049058e-08 1.79099076114e-08 1.58676859748e-08 1.40697358598e-08 1.24835389061e-08 1.10822278593e-08 9.84089538667e-09 8.73984427934e-09 7.76176189938e-09 6.89023390612e-09 6.11408874826e-09 5.42057060486e-09 4.80023918843e-09 4.24445451267e-09 3.74567088068e-09 3.29771454045e-09 2.89468939546e-09 2.5313526563e-09 2.20376814774e-09 1.90752604692e-09 1.6399151294e-09 1.3973258735e-09 1.17778202527e-09 9.7806604728e-10 7.96789661955e-10 6.31731625188e-10 4.81291334601e-10 3.43884520498e-10 2.18792545076e-10 1.04806790218e-10
0.4 8 663.317001409 720.13359536 258.976189523 268.71810159 257.100060795 54.3372226508 23.7980511784 13.4081469714 0.380129918725 1.1588772437 0.217324278802 0.0513035699953 0.0198143508913 0.000522991540147 0.00118029345347 1.51288158516e-05 2.99090453089e-06 3.35923312478e-05 2.0767594126e-05 1.39759504174e-05 1.04904466582e-05 7.8445130928e-06 5.90677872528e-06 4.50058551442e-06 3.46343723816e-06 2.68962878037e-06 2.10665545069e-06 1.66331631812e-06 1.32317832322e-06 1.06004854058e-06 8.54899859496e-07 6.93776985632e-07 5.66350887376e-07 4.64911711299e-07 3.83656217226e-07 3.1818448675e-07 2.65135204419e-07 2.21921753721e-07 1.86542524781e-07 1.57437546711e-07 1.33383559975e-07 1.13417076155e-07 9.67737285738e-08 8.28446561092e-08 7.11425571994e-08 6.12751469649e-08 5.29253353159e-08 4.58354376522e-08 3.97964814729e-08 3.46357876006e-08 3.0212897464e-08 2.64112872265e-08 2.3134174693e-08 2.03019713544e-08 1.78477281676e-08 1.5715891671e-08 1.38591942753e-08 1.22387144508e-08 1.08208472689e-08 9.57820722025e-09 8.48621756599e-09 7.52489591257e-09 6.6766673838e-09 5.92718718915e-09 5.26339454734e-09 4.6746963823e-09 4.1515228128e-09 3.68536727776e-09 3.27045173568e-09 2.89939313354e-09 2.56771750172e-09 2.27042924184e-09 2.00367632624e-09 1.76396785486e-09 1.54843486958e-09 1.35412816173e-09 1.17888096575e-09 1.02052651608e-09 8.77279237393e-10 7.47433804951e-10 6.29987086546e-10 5.23334070652e-10 4.26050309541e-10 3.37895051483e-10 2.57343535528e-10 1.84054696728e-10 1.17005340235e-10 5.58544011001e-11
0.5 9 2391.28017343 363.72426005 1587.63266422 1530.80726131 541.499612551 114.521491135 154.050009346 33.0381751102 10.3775177648 5.81578245639 0.198994176685 0.423180589313 0.0767809522295 0.0157379060285 0.00639582828161 0.000221480581658 0.000241946481094 6.91250590453e-05 4.34919761079e-05 2.23955882001e-05 1.75377150484e-05 1.33441695744e-05 1.00214517245e-05 7.64046304838e-06 5.8870196795e-06 4.57574725598e-06 3.58670714949e-06 2.83386159582e-06 2.25575456085e-06 1.80817952399e-06 1.45898148744e-06 1.18454691371e-06 9.67380680715e-07 7.94412255816e-07 6.55793371731e-07 5.44052278017e-07 4.53475975033e-07 3.79666798301e-07 3.19217509519e-07 2.69472741802e-07 2.28349756882e-07 1.94205093699e-07 1.6573636855e-07 1.41905186277e-07 1.21879403246e-07 1.04989832955e-07 9.06949436847e-08 7.8556312721e-08 6.82135611844e-08 5.93752561754e-08 5.17984531706e-08 4.52848089101e-08 3.967017667e-08 3.48162121103e-08 3.06099544049e-08 2.69554655994e-08 2.37729593611e-08 2.09944279784e-08 1.85639439464e-08 1.64330859085e-08 1.45601176709e-08 1.29118814949e-08 1.14573139911e-08 1.01711154195e-08 9.03289519488e-09 8.02264809233e-09 7.12474188838e-09 6.32614135276e-09 5.61320808254e-09 4.97702852695e-09 4.40718120366e-09 3.89704796876e-09 3.43942426052e-09 3.02787623777e-09 2.6582654662e-09 2.32457697452e-09 2.02372788049e-09 1.75224994161e-09 1.50607174276e-09 1.28355131406e-09 1.08167279245e-09 8.98375338196e-10 7.31782414276e-10 5.80034238479e-10 4.4200823956e-10 3.16246750377e-10 2.01359122968e-10 9.62395408829e-11
0.6 10 2405.83066586 1852.97795117 1310.92503836 1597.47280887 3675.56459178 2610.57398663 662.201643173 178.454168668 159.194646957 25.3522753249 9.74726057343 4.27800385815 0.0520640962979 0.28054280227 0.0453864202578 0.00983789823762 0.003223947662 9.65827085884e-05 0.000263987190504 6.72863007432e-05 5.42997786599e-05 4.48278367956e-05 3.3288925595e-05 2.52877082418e-05 1.94978547029e-05 1.51521292857e-05 1.18734774661e-05 9.37907301417e-06 7.46411355358e-06 5.98187270416e-06 4.82569811138e-06 3.91725978546e-06 3.1985448318e-06 2.62620954376e-06 2.16762420903e-06 1.79802262962e-06 1.49847445353e-06 1.25441814357e-06 1.05456848323e-06 8.90130870016e-07 7.54211221481e-07 6.41371748087e-07 5.47300927037e-07 4.68561951026e-07 4.02403819016e-07 3.46614779948e-07 2.99401006933e-07 2.59307981892e-07 2.25154814649e-07 1.95966416917e-07 1.70950289258e-07 1.49445817562e-07 1.30907405924e-07 1.1488646036e-07 1.01001727697e-07 8.89391551175e-08 7.84344995313e-08 6.92668156649e-08 6.12446405979e-08 5.42115097336e-08 4.80320647244e-08 4.25918619455e-08 3.77932610533e-08 3.35513646181e-08 2.97944905567e-08 2.64630868145e-08 2.35000528792e-08 2.08642232654e-08 1.85133599376e-08 1.6413766954e-08 1.45355150658e-08 1.28530418345e-08 1.1342866079e-08 9.98813344404e-09 8.76644806694e-09 7.66751857628e-09 6.67523118711e-09 5.77824751506e-09 4.96719551721e-09 4.23323942559e-09 3.56758177755e-09 2.96332760963e-09 2.41347981078e-09 1.91286715839e-09 1.45898703611e-09 1.04265892777e-09 6.63614695906e-10 3.17296003565e-10
0.7 11 4415.62959835 1353.31734872 3737.06157639 4839.24603975 3931.25241871 1384.08800532 3961.79622684 2480.55665198 518.202211488 159.858410714 115.104429176 15.5843639049 6.37946498431 2.52304637087 0.0317709052485 0.150967507455 0.0236109699986 0.00394075423757 0.00198042936786 0.000210871156722 9.17812660576e-05 0.000125858083543 9.14358167713e-05 6.79824935979e-05 5.26045106627e-05 4.0893540558e-05 3.20256383035e-05 2.5289804812e-05 2.01208970939e-05 1.61210601484e-05 1.30020595402e-05 1.05520793574e-05 8.61427333771e-06 7.07152280942e-06 5.83566429524e-06 4.83982182969e-06 4.03288873813e-06 3.3755670071e-06 2.83740245811e-06 2.39466875042e-06 2.02877392745e-06 1.7250527148e-06 1.4718828848e-06 1.2600034803e-06 1.08200295467e-06 9.31910424574e-07 8.04908145802e-07 6.97070330927e-07 6.05215834989e-07 5.26721417752e-07 4.59453115123e-07 4.01631612607e-07 3.51791032362e-07 3.08717659607e-07 2.71391353315e-07 2.38969547791e-07 2.10736591001e-07 1.86091253635e-07 1.64536850883e-07 1.45634535636e-07 1.29030928864e-07 1.14409068531e-07 1.01513659898e-07 9.01167701819e-08 8.00259351366e-08 7.10706122935e-08 6.31150477e-08 5.60339561696e-08 4.97181941012e-08 4.40783206491e-08 3.9037385906e-08 3.45162567345e-08 3.04599765846e-08 2.68166669024e-08 2.35370081661e-08 2.05850665583e-08 1.79203807441e-08 1.55134950148e-08 1.33359379047e-08 1.13655549985e-08 9.5750738176e-09 7.95112655238e-09 6.47685580459e-09 5.1349388974e-09 3.91283120639e-09 2.79814916508e-09 1.7792429154e-09 8.48793268498e-10
0.8 12 26678.9816675 13201.0966112 12806.2691283 9089.64106867 4932.86617379 17413.393929 14765.3078101 4042.12733533 1876.68753499 1833.56384204 470.497548511 67.7040092996 68.7075998558 11.1966166457 2.89201587793 1.34547467988 0.0554499965489 0.0657347554868 0.0133119107545 0.00194740937206 0.000377427694622 0.00029253725273 0.000227347184172 0.000150721522769 0.000118250389424 9.24939182969e-05 7.23932088662e-05 5.71972952726e-05 4.5536568312e-05 3.65032722653e-05 2.94546498921e-05 2.39147159767e-05 1.95305473082e-05 1.60384567865e-05 1.32397629023e-05 1.09836804995e-05 9.15489287639e-06 7.66464602654e-06 6.4441589373e-06 5.43981953734e-06 4.60954248414e-06 3.92017548822e-06 3.34542180499e-06 2.8643033347e-06 2.46002905616e-06 2.11906215671e-06 1.83049948145e-06 1.58545722031e-06 1.37667809267e-06 1.19826848402e-06 1.04533681994e-06 9.13864018534e-07 8.00529192061e-07 7.025675598e-07 6.17670706019e-07 5.43917835688e-07 4.79691531326e-07 4.23625039821e-07 3.74571232117e-07 3.31557958811e-07 2.93781109727e-07 2.60503147432e-07 2.31146441076e-07 2.05203125998e-07 1.82239021023e-07 1.61854881299e-07 1.43744582911e-07 1.27619629779e-07 1.13237468892e-07 1.00396870453e-07 8.89072920739e-08 7.86189610479e-08 6.93894283104e-08 6.1081780106e-08 5.3615200914e-08 4.68869894504e-08 4.08196300906e-08 3.53367568509e-08 3.03796741594e-08 2.58869187892e-08 2.18163159387e-08 1.81128957251e-08 1.4751387331e-08 1.16996008016e-08 8.91359429419e-09 6.37252523898e-09 4.05195311487e-09 1.93331334487e-09
0.9 13 57114.2429708 7672.81082206 39478.6862516 19075.1078312 19680.438459 11504.8279502 29664.7327173 49769.0160197 33284.1380907 9476.01736136 1184.96491652 1829.36798912 491.34431886 36.598151458 51.7790119515 9.06532235265 1.65584351617 0.855477801089 0.0546227693594 0.0368617215743 0.0064974743308 0.00021473653499 0.000949499026155 0.000419305599754 0.000329347978935 0.000266485400248 0.000207761993386 0.000164048054835 0.000130705661211 0.000104817636976 8.46045684298e-05 6.87122399994e-05 5.6130323017e-05 4.61049446575e-05 3.80677083722e-05 3.15868624346e-05 2.63321749406e-05 2.20491983561e-05 1.85407731649e-05 1.56531245098e-05 1.32655552997e-05 1.12828925515e-05 9.62957601578e-06 8.24544429123e-06 7.08223318878e-06 6.10111678861e-06 5.27065483375e-06 4.56538512297e-06 3.96448186955e-06 3.45089640787e-06 3.01059915566e-06 2.63210164639e-06 2.30578145252e-06 2.02369088753e-06 1.77925636341e-06 1.56685034279e-06 1.38187892831e-06 1.22040906368e-06 1.0791211837e-06 9.55251380975e-07 8.46390748865e-07 7.50566210827e-07 6.66021291301e-07 5.91272883125e-07 5.25091449026e-07 4.66365352165e-07 4.14191935137e-07 3.67731688446e-07 3.263143828e-07 2.89312276863e-07 2.56195176397e-07 2.26559460399e-07 1.99944127219e-07 1.76037788305e-07 1.54533479107e-07 1.35147654557e-07 1.17650222648e-07 1.01855112405e-07 8.75548482632e-08 7.4618359982e-08 6.28702204753e-08 5.22240521618e-08 4.25401120002e-08 3.37272917911e-08 2.56880298376e-08 1.83722312307e-08 1.16903792443e-08 5.58599847527e-09
1.0 14 23751.1099172 46698.3437934 30257.3341552 59383.0445687 1999.97803885 16315.7580774 41590.1613166 9307.74182085 40698.6984554 50696.6503301 27983.5672858 6792.77522422 813.343790179 1078.65071757 265.884051017 17.002679771 24.071122957 4.17665980853 0.61464184788 0.345494644526 0.0240107513496 0.0105232717696 0.00395888438123 0.00096000863426 0.000536418387529 0.000521521357089 0.000403768958073 0.000316152989694 0.000252180108727 0.000202209881659 0.00016315378457 0.000132470612652 0.000108186509276 8.88419272092e-05 7.33380069189e-05 6.08396520488e-05 5.07083754335e-05 4.24526061235e-05 3.56913252311e-05 3.01275242394e-05 2.55281631223e-05 2.17095323675e-05 1.85258533084e-05 1.5860909287e-05 1.36216570452e-05 1.17332469708e-05 1.01350481656e-05 8.77793170392e-06 7.62182300222e-06 6.63379050541e-06 5.78694287833e-06 5.05893916335e-06 4.43141380389e-06 3.8889944767e-06 3.41896857688e-06 3.01064026338e-06 2.6550394526e-06 2.34465835064e-06 2.0730937935e-06 1.83503891367e-06 1.62583728979e-06 1.441704706e-06 1.27921882817e-06 1.13563447932e-06 1.00845840207e-06 8.95653868243e-07 7.95411413984e-07 7.06170390688e-07 6.26601153061e-07 5.55557224895e-07 4.91956106706e-07 4.35007561042e-07 3.83924123648e-07 3.38040930487e-07 2.96699933243e-07 2.59509020937e-07 2.25871914461e-07 1.95550063539e-07 1.68100501419e-07 1.43241824319e-07 1.20698230039e-07 1.00250939419e-07 8.1673198625e-08 6.4716868461e-08 4.93284993164e-08 3.52683543734e-08 2.24557211328e-08 1.07132528486e-08
1.1 15 95303.4594987 40965.5631619 23512.9638875 66351.8503484 21150.7691482 30607.4442503 24724.6521762 31258.5120219 65954.6088976 39520.0006752 2026.09212415 16856.3733875 10718.433 2852.19999473 121.998811993 331.488015371 89.7725957257 1.41302035605 6.45400147974 1.30645704134 0.108406402138 0.0840148716133 0.0105291941297 0.00339207189106 8.60064513233e-05 0.000624725193731 0.000511321709852 0.000381290120509 0.000305604000263 0.000245528616664 0.000198027395076 0.000160793564246 0.000131328454715 0.000107851594208 8.90344659133e-05 7.38642100573e-05 6.15663430631e-05 5.15445040182e-05 4.33364855478e-05 3.6581866367e-05 3.09979863681e-05 2.63616778627e-05 2.24961542463e-05 1.92604025461e-05 1.65415093181e-05 1.42485214469e-05 1.2307878026e-05 1.06599764429e-05 9.25607417779e-06 8.05627156729e-06 7.02786024171e-06 6.14385292686e-06 5.38176786771e-06 4.72308694388e-06 4.15230134153e-06 3.65635639872e-06 3.22452635426e-06 2.84760830501e-06 2.51783823767e-06 2.22870699978e-06 1.97466471045e-06 1.75101582635e-06 1.55367042736e-06 1.37929227418e-06 1.22485230408e-06 1.08786244477e-06 9.66086949461e-07 8.57711963612e-07 7.61070165189e-07 6.7476094969e-07 5.97541446711e-07 5.28373850704e-07 4.66329567437e-07 4.10577802033e-07 3.60396041846e-07 3.15157943303e-07 2.74378296109e-07 2.37535673183e-07 2.04187058716e-07 1.74009727123e-07 1.46649398983e-07 1.21813289793e-07 9.92185019122e-08 7.86888422476e-08 5.99407470244e-08 4.28881443996e-08 2.73083169055e-08 1.30687209159e-08
1.2 16 186786.794303 53538.9687221 120796.699588 25145.4659945 100548.573923 32325.4533616 7554.73393141 62571.357661 17814.2034151 84282.1836006 121268.27217 77402.7958178 22445.9952515 2308.2438693 4552.93753572 1587.90376447 96.5051486 109.230434508 37.3139067156 1.70968363539 1.92207129052 0.48275026787 0.00594763208018 0.0257924757371 0.00241632498655 0.000417394248629 0.000893775647084 0.000538371103756 0.000431080517401 0.000351341136003 0.000282992589177 0.000229830164229 0.00018783462745 0.000154327317902 0.00012745399098 0.000105778045244 8.81975819536e-05 7.38642746619e-05 6.21202045301e-05 5.24520944659e-05 4.44567228979e-05 3.78161521157e-05 3.22779001209e-05 2.76406452599e-05 2.37431466488e-05 2.04553668378e-05 1.76721948846e-05 1.53082471934e-05 1.32939118375e-05 1.15722887198e-05 1.0096261561e-05 8.82721158027e-06 7.73315127758e-06 6.78740125895e-06 5.96761660315e-06 5.25543510822e-06 4.6351474817e-06 4.09353473961e-06 3.61972395147e-06 3.20429031587e-06 2.83921893537e-06 2.51777849287e-06 2.2341839237e-06 1.98353749466e-06 1.76147222536e-06 1.56456844331e-06 1.3894836801e-06 1.23368090772e-06 1.09472207872e-06 9.70571702458e-07 8.59599245257e-07 7.60089744037e-07 6.70747794061e-07 5.90617266252e-07 5.18435200677e-07 4.53369479797e-07 3.94719021872e-07 3.41702663541e-07 2.93759431344e-07 2.50311702188e-07 2.10993334803e-07 1.75188581562e-07 1.42690547141e-07 1.13146196364e-07 8.62079350341e-08 6.16689557871e-08 3.9192194536e-08 1.87838839004e-08

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/graph/tst_utils.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/graph/rigidity.py
double banana 3D dof (method=integer): 7
double banana 3D dof (method=float): 7

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/graph/tst_rigidity.py
repeat_log = {0: 85}
u+s,u,s: 1.29 1.27 0.02

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/graph/rigidity_matrix_symbolic.py
u+s,u,s: 1.37 1.34 0.03

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/graph/tst_tardy_tree_find_paths.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/graph/tst_tardy_tree.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/rigid_body/essence/tst_basic.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/rigid_body/essence/tst_tardy.py
OK
usr+sys time: 30.76 seconds
wall clock time: 30.76 seconds

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/rigid_body/essence/tst_energy_plots.py
i_step: 0 e_tot: 1.00023
i_step: 100 e_tot: 1.02123
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/rigid_body/tst.py
u+s,u,s: 5.27 5.21 0.06

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/rigid_body/proto/free_motion_reference_impl.py
e_kin tot ang lin: 0.0406605941304 0.0123105941304 0.02835
            e_pot: 0.64030878777
            e_tot: 0.680969381901
ang acc 3D: (0.4499405243671747, -0.22736369685250066, -0.6859763000328927)
lin acc 3D: (0.2108121283092794, 0.3044814367238479, -0.7824311428947446)

e_kin tot ang lin: 0.0433343867202 0.012335145794 0.0309992409262
            e_pot: 0.637520443168
            e_tot: 0.680854829888
ang acc 3D: (0.4491523283824315, -0.2233952828755118, -0.688364609039924)
lin acc 3D: (0.2063305410676703, 0.3022012812609254, -0.7827791077048256)

e_kin tot ang lin: 0.0462449163781 0.0123908412125 0.0338540751655
            e_pot: 0.63449664984
            e_tot: 0.680741566218
ang acc 3D: (0.4482905223840879, -0.2193464063160701, -0.6906197519803725)
lin acc 3D: (0.20168867739512958, 0.299808900299363, -0.7830079270607541)

e_kin tot ang lin: 0.0493898546021 0.0124776322264 0.0369122223756
            e_pot: 0.631239827538
            e_tot: 0.680629682141
ang acc 3D: (0.44735466644443667, -0.21521902126722914, -0.692740958483326)
lin acc 3D: (0.19688964121862268, 0.29730414639378616, -0.7831155604559972)

e_kin tot ang lin: 0.0527666878789 0.0125954480796 0.0401712397993
            e_pot: 0.627752580076
            e_tot: 0.680519267955
ang acc 3D: (0.4463443200247767, -0.2110151239756078, -0.694727476553102)
lin acc 3D: (0.1919366941490876, 0.29468687861617315, -0.783099948460292)

e_kin tot ang lin: 0.0563727196994 0.0127441954807 0.0436285242187
            e_pot: 0.624037693245
            e_tot: 0.680410412944
ang acc 3D: (0.4452590426839754, -0.2067367517215091, -0.6965785731789051)
lin acc 3D: (0.18683325327725137, 0.29195696483157874, -0.7829590159403469)

e_kin tot ang lin: 0.0602050727137 0.0129237586762 0.0472813140375
            e_pot: 0.620098132599
            e_tot: 0.680303205313
ang acc 3D: (0.44409839480429714, -0.20238598167333133, -0.6982935349568492)
lin acc 3D: (0.18158288880693388, 0.2891142841060344, -0.7826906753299725)

e_kin tot ang lin: 0.0642606910252 0.0131339995361 0.0511266914891
            e_pot: 0.615937041095
            e_tot: 0.68019773212
ang acc 3D: (0.4428619383337592, -0.1979649297164907, -0.6998716687235316)
lin acc 3D: (0.17618932152521946, 0.2861587292410898, -0.7822928299444691)

e_kin tot ang lin: 0.0685363426208 0.013374757653 0.0551615849678
            e_pot: 0.611557736598
            e_tot: 0.680094079218
ang acc 3D: (0.4415492375442347, -0.1934757492571058, -0.7013123022002559)
lin acc 3D: (0.17065642010895676, 0.2830902094290727, -0.7817633773339945)

e_kin tot ang lin: 0.0730286219358 0.0136458504521 0.0593827714837
            e_pot: 0.606963709255
            e_tot: 0.679992331191
ang acc 3D: (0.44015985980451133, -0.18892063000069204, -0.702614784647033)
lin acc 3D: (0.16498819826718966, 0.2799086530227533, -0.7811002126706817)

OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/rigid_body/proto/tst_featherstone.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/rigid_body/proto/tst_free_motion.py
u+s,u,s: 0.72 0.68 0.04

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/rigid_body/proto/tst_free_motion_hard.py
OK
usr+sys time: 2.94 seconds
wall clock time: 2.94 seconds

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/rigid_body/proto/tst_joint_lib.py
OK
usr+sys time: 2.36 seconds
wall clock time: 2.37 seconds

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/rigid_body/proto/tst_singular.py
OK
usr+sys time: 8.05 seconds
wall clock time: 8.06 seconds

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/rigid_body/proto/tst_spherical_refinement.py
OK
usr+sys time: 1.29 seconds
wall clock time: 1.30 seconds

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/rigid_body/proto/tst_molecules.py
OK
usr+sys time: 5.75 seconds
wall clock time: 5.74 seconds

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/sparse/tests/tst_sparse.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/sparse/tests/tst_lu_factorization.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/iso_surface/tst_iso_surface.py
u+s,u,s: 13.99 13.94 0.05

/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_build/scitbx/fortran_io/tests/tst_numeric_manipulators
OK

/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_build/scitbx/fortran_io/tests/tst_numeric_parsers
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/simplex.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/differential_evolution.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/golden_section_search.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/direct_search_simulated_annealing.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/scitbx/random/tests/tst_random.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_adp_aniso_restraints.py
Traceback (most recent call last):
  File "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_adp_aniso_restraints.py", line 124, in <module>
    run()
  File "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_adp_aniso_restraints.py", line 106, in run
    log                      = out)
  File "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/mmtbx/monomer_library/pdb_interpretation.py", line 3538, in run
    mon_lib_srv = server.server()
  File "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/mmtbx/monomer_library/server.py", line 218, in __init__
    list_cif = mon_lib_list_cif()
  File "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/mmtbx/monomer_library/server.py", line 64, in mon_lib_list_cif
    strict=strict)
  File "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/mmtbx/monomer_library/server.py", line 56, in __init__
    + ", ".join(mon_lib_env_vars))
mmtbx.monomer_library.server.MonomerLibraryServerError: Cannot find CCP4 monomer library. Please define one of these environment variables: MMTBX_CCP4_MONOMER_LIB, CLIBD_MON

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/math/boost_python/tst_math.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/xray/boost_python/tst_targets_ls_with_scale.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/xray/boost_python/tst_f_model.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/array_family/boost_python/tst_flex.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/uctbx/boost_python/tst_uctbx.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/uctbx/boost_python/tst_crystal_orientation.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/boost_python/tst_sgtbx.py
Traceback (most recent call last):
  File "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/boost_python/tst_sgtbx.py", line 2272, in <module>
    run()
  File "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/boost_python/tst_sgtbx.py", line 2261, in run
    exercise_wyckoff()
  File "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/boost_python/tst_sgtbx.py", line 1625, in exercise_wyckoff
    assert str(m.sym_op()) in ("x+3,y-1,z+5", "x+3,-y+1,z+5")
AssertionError

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/boost_python/tst_N_fold_rot.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/crystal/tst_ext.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/crystal/distance_based_connectivity.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/adptbx/boost_python/tst_adptbx.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/miller/boost_python/tst_miller.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/eltbx/tst_distance_based_connectivity.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/eltbx/boost_python/tst_chemical_elements.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/eltbx/boost_python/tst_xray_scattering.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/eltbx/boost_python/tst_henke.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/eltbx/boost_python/tst_icsd_radii.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/eltbx/boost_python/tst_covalent_radii.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/eltbx/boost_python/tst_neutron.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/eltbx/boost_python/tst_sasaki.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/eltbx/boost_python/tst_tiny_pse.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/eltbx/boost_python/tst_wavelengths.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/xray/boost_python/tst_xray.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/maptbx/boost_python/tst_maptbx.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/dmtbx/boost_python/tst_dmtbx.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/translation_search/boost_python/tst_translation_search.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/geometry_restraints/tst_ext.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/geometry_restraints/tst_proxy_registry.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/adp_restraints/tst_ext.py
Skipping exercise_rigid_bond_test(): input file not available
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_math_module.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_krivy_gruber.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_sgtbx.py
u+s,u,s: 3.09 3.03 0.06

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_itvb_2001_table_a1427_hall_symbols.py
Skipping exercise(): input file not available
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_space_group_type_tidy_cb_op_t.py
P 4 (No. 75)
P 31 1 2 (No. 151)
  cb_op=x-y,-y,-z -> P 31 1 2 (a,b,c+1/6)
  cb_op=-y,x-y,z -> P 31 1 2 (a,b,c+1/6)
  cb_op=-y,-x,-z -> P 31 1 2 (a,b,c+1/3)
  cb_op=y,x,-z -> P 31 1 2 (a,b,c+1/3)
  cb_op=-x+y,-x,z -> P 31 1 2 (a,b,c+1/3)
  cb_op=x-y,x,z -> P 31 1 2 (a,b,c+1/3)
  cb_op=-x+y,y,-z -> P 31 1 2 (a,b,c+1/6)
  cb_op=y,-x+y,z -> P 31 1 2 (a,b,c+1/6)
u+s,u,s: 2.97 2.94 0.03

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_sgtbx_denominators.py
P 1
P -1
P 1 2 1
C 1 2/c 1
P 2 2 2
I m m a
P 4
P 41
I 41/a c d :2
P 3
P 31
P 3 1 m
R -3 c :H
P 6
P 63/m m c
P 2 3
I a -3 d
I 4/m c m (a+b-1/6,-a+b,c+1/4)
u+s,u,s: 0.38 0.34 0.04
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_sgtbx_subgroups.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_sgtbx_lattice_symmetry.py
bravais type: P 1
bravais type: P 1 2 1
bravais type: C 1 2 1
bravais type: P 2 2 2
bravais type: C 2 2 2
bravais type: F 2 2 2
bravais type: I 2 2 2
bravais type: P 4 2 2
bravais type: I 4 2 2
bravais type: P 6 2 2
bravais type: R 3 2 :H
bravais type: P 4 3 2
bravais type: I 4 3 2
bravais type: F 4 3 2
u+s,u,s: 11.28 11.22 0.06

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_adp_constraints.py
P 1
P -1
P 1 2 1
C 1 2/c 1
P 2 2 2
I m m a
P 4
P 41
I 41/a c d :2
P 3
P 31
P 3 1 m
R -3 c :H
P 6
P 63/m m c
P 2 3
I a -3 d
I 4/m c m (a+b-1/6,-a+b,c+1/4)
u+s,u,s: 2.04 1.99 0.05

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_adp_constraints_cartesian.py
P 1
a,
P -1
i, h, g, f, e, d, c, b, a,
P 1 2 1
e, d, c, b, a,
C 1 2/c 1
f, e, d, c, b, a,
P 2 2 2
u, t, s, r, q, p, o, n, m, l, k, j, i, h, g, f, e, d, c, b, a,
I m m a
j, i, h, g, f, e, d, c, b, a,
P 4
d, c, b, a,
P 41
a,
I 41/a c d :2
g, f, e, d, c, b, a,
P 3
d, c, b, a,
P 31
a,
P 3 1 m
d, c, b, a,
R -3 c :H
f, e, d, c, b, a,
P 6
d, c, b, a,
P 63/m m c
l, k, j, i, h, g, f, e, d, c, b, a,
P 2 3
j, i, h, g, f, e, d, c, b, a,
I a -3 d
h, g, f, e, d, c, b, a,
I 4/m c m (a+b-1/6,-a+b,c+1/4)
m, l, k, j, i, h, g, f, e, d, c, b, a,
u+s,u,s: 0.45 0.38 0.07

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_sgtbx_site_constraints.py
Skipping process_zeolite_atlas(): input file not available
u+s,u,s: 0.46 0.38 0.08

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_reflection_statistics.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_sgtbx_harker.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_twin_target.py
u+s,u,s: 46.19 46.10 0.09

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/symbol_confidence.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/bravais_types.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_miller_lookup_utils.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_crystal.py
P 1
P -1
P 1 2 1
C 1 2/c 1
P 2 2 2
I m m a
P 4
P 41
I 41/a c d :2
P 3
P 31
P 3 1 m
R -3 c :H
P 6
P 63/m m c
P 2 3
I a -3 d
I 4/m c m (a+b-1/6,-a+b,c+1/4)
u+s,u,s: 2.77 2.70 0.07

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_direct_space_asu.py
P 1
P -1
P 1 2 1
C 1 2/c 1
P 2 2 2
I m m a
P 4
P 41
I 41/a c d :2
P 3
P 31
P 3 1 m
R -3 c :H
P 6
P 63/m m c
P 2 3
I a -3 d
I 4/m c m (a+b-1/6,-a+b,c+1/4)
u+s,u,s: 23.89 23.81 0.08

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_pair_asu_table.py
Skipping exercise_all(): phenix_regression/misc not available
u+s,u,s: 0.47 0.41 0.06

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_crystal_asu_clusters.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_coordination_sequences.py
Skipping exercise(): input file not available
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_crystal_close_packing.py
time groel_sampling: 1.33 seconds
P 1
P -1
P 1 2 1
C 1 2/c 1
P 2 2 2
I m m a
P 4
P 41
I 41/a c d :2
P 3
P 31
P 3 1 m
R -3 c :H
P 6
P 63/m m c
P 2 3
I a -3 d
I 4/m c m (a+b-1/6,-a+b,c+1/4)
u+s,u,s: 2.99 2.92 0.07
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_xray.py
P 1
P -1
P 1 2 1
C 1 2/c 1
P 2 2 2
I m m a
P 4
P 41
I 41/a c d :2
P 3
P 31
P 3 1 m
R -3 c :H
P 6
P 63/m m c
P 2 3
I a -3 d
I 4/m c m (a+b-1/6,-a+b,c+1/4)
u+s,u,s: 220.48 220.04 0.44

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_structure_factors_multithread.py
omptbx.have_omp_h
Skipping raw multithreaded structure factor computation tests
usr+sys time: 1.90 seconds
wall clock time: 0.67 seconds

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_miller.py
P 1
P -1
P 1 2 1
C 1 2/c 1
P 2 2 2
I m m a
P 4
P 41
I 41/a c d :2
P 3
P 31
P 3 1 m
R -3 c :H
P 6
P 63/m m c
P 2 3
I a -3 d
I 4/m c m (a+b-1/6,-a+b,c+1/4)
u+s,u,s: 89.28 87.80 1.48
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_reciprocal_space_asu.py
P 1
P -1
P 1 2 1
C 1 2/c 1
P 2 2 2
I m m a
P 4
P 41
I 41/a c d :2
P 3
P 31
P 3 1 m
R -3 c :H
P 6
P 63/m m c
P 2 3
I a -3 d
I 4/m c m (a+b-1/6,-a+b,c+1/4)
u+s,u,s: 1.83 1.77 0.06

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_triplet_generator.py
P 1
P -1
P 1 2 1
C 1 2/c 1
P 2 2 2
I m m a
P 4
P 41
I 41/a c d :2
P 3
P 31
P 3 1 m
R -3 c :H
P 6
P 63/m m c
P 2 3
I a -3 d
I 4/m c m (a+b-1/6,-a+b,c+1/4)
u+s,u,s: 10.87 10.73 0.14

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_emma.py
P 1
P -1
P 1 2 1
C 1 2/c 1
P 2 2 2
I m m a
P 4
P 41
I 41/a c d :2
P 3
P 31
P 3 1 m
R -3 c :H
P 6
P 63/m m c
P 2 3
I a -3 d
I 4/m c m (a+b-1/6,-a+b,c+1/4)
u+s,u,s: 6.40 6.31 0.09

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_find_centre_of_inversion.py
P 1
P -1
P 1 2 1
C 1 2/c 1
P 2 2 2
I m m a
P 4
P 41
I 41/a c d :2
P 3
P 31
P 3 1 m
R -3 c :H
P 6
P 63/m m c
P 2 3
I a -3 d
I 4/m c m (a+b-1/6,-a+b,c+1/4)
u+s,u,s: 1.59 1.52 0.07

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_expand_to_p1.py
P 1
P -1
P 1 2 1
C 1 2/c 1
P 2 2 2
I m m a
P 4
P 41
I 41/a c d :2
P 3
P 31
P 3 1 m
R -3 c :H
P 6
P 63/m m c
P 2 3
I a -3 d
I 4/m c m (a+b-1/6,-a+b,c+1/4)
u+s,u,s: 16.35 16.26 0.09

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_change_basis.py
P 1
P -1
P 1 2 1
C 1 2/c 1
P 2 2 2
I m m a
P 4
P 41
I 41/a c d :2
P 3
P 31
P 3 1 m
R -3 c :H
P 6
P 63/m m c
P 2 3
I a -3 d
I 4/m c m (a+b-1/6,-a+b,c+1/4)
u+s,u,s: 17.71 17.62 0.09

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_wilson_plot.py
P 1
P -1
P 1 2 1
C 1 2/c 1
P 2 2 2
I m m a
P 4
P 41
I 41/a c d :2
P 3
P 31
P 3 1 m
R -3 c :H
P 6
P 63/m m c
P 2 3
I a -3 d
I 4/m c m (a+b-1/6,-a+b,c+1/4)
u+s,u,s: 18.97 18.82 0.15

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_xray_derivatives.py
P 1
P -1
P 1 2 1
C 1 2/c 1
P 2 2 2
I m m a
P 4
P 41
I 41/a c d :2
P 3
P 31
P 3 1 m
R -3 c :H
P 6
P 63/m m c
P 2 3
I a -3 d
I 4/m c m (a+b-1/6,-a+b,c+1/4)
u+s,u,s: 350.71 349.59 1.12

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_xray_fast_gradients.py
P 1
P -1
P 1 2 1
C 1 2/c 1
P 2 2 2
I m m a
P 4
P 41
I 41/a c d :2
P 3
P 31
P 3 1 m
R -3 c :H
P 6
P 63/m m c
P 2 3
I a -3 d
I 4/m c m (a+b-1/6,-a+b,c+1/4)
from_scatterers_direct:  72 calls,   3.17 s
from_scatterers_fft:    270 calls,  69.40 s
gradients_direct:       414 calls, 116.63 s
gradients_fft:           36 calls,  15.98 s
usr+sys time: 371.54 seconds
wall clock time: 72.20 seconds

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_xray_minimization.py
P 1
P -1
P 1 2 1
C 1 2/c 1
P 2 2 2
I m m a
P 4
P 41
I 41/a c d :2
P 3
P 31
P 3 1 m
R -3 c :H
P 6
P 63/m m c
0.998462798576
Test did not pass: ruling out a random fluke...
Ruled out!
P 2 3
I a -3 d
Test did not pass: ruling out a random fluke...
Ruled out!
I 4/m c m (a+b-1/6,-a+b,c+1/4)
u+s,u,s: 3847.76 3844.33 3.43

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_xray_minimization.py
P 1
P -1
P 1 2 1
C 1 2/c 1
P 2 2 2
I m m a
P 4
P 41
I 41/a c d :2
P 3
P 31
P 3 1 m
R -3 c :H
P 6
P 63/m m c
0.998462798576
Test did not pass: ruling out a random fluke...
Ruled out!
P 2 3
I a -3 d
Test did not pass: ruling out a random fluke...
Ruled out!
I 4/m c m (a+b-1/6,-a+b,c+1/4)
u+s,u,s: 3843.02 3840.11 2.91

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/maptbx/tst_real_space_refinement.py
u+s,u,s: 4.12 4.05 0.07

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_maptbx_structure_factors.py
P 1
P -1
P 1 2 1
C 1 2/c 1
P 2 2 2
I m m a
P 4
P 41
I 41/a c d :2
P 3
P 31
P 3 1 m
R -3 c :H
P 6
P 63/m m c
P 2 3
I a -3 d
I 4/m c m (a+b-1/6,-a+b,c+1/4)
u+s,u,s: 34.96 34.66 0.30

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/maptbx/tst_real_space_refinement_simple.py
u+s,u,s: 7.72 7.61 0.11

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/maptbx/tst_real_space_target_and_gradients.py
Start: 0.8
Final: 8.73417576466e-05
Final: 8.73417576466e-05
Final: 8.73417576466e-05
Final: 8.73417576467e-05
Final: 8.73417576467e-05
OK
Time:    9.302

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_miller_merge_equivalents.py
P 1
P -1
P 1 2 1
C 1 2/c 1
P 2 2 2
I m m a
P 4
P 41
I 41/a c d :2
P 3
P 31
P 3 1 m
R -3 c :H
P 6
P 63/m m c
P 2 3
I a -3 d
I 4/m c m (a+b-1/6,-a+b,c+1/4)
u+s,u,s: 11.21 11.12 0.09
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_grouped_data.py
P 1
P -1
P 1 2 1
C 1 2/c 1
P 2 2 2
I m m a
P 4
P 41
I 41/a c d :2
P 3
P 31
P 3 1 m
R -3 c :H
P 6
P 63/m m c
P 2 3
I a -3 d
I 4/m c m (a+b-1/6,-a+b,c+1/4)
u+s,u,s: 5.78 5.71 0.07
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_miller_fft_map.py
P 1
P -1
P 1 2 1
C 1 2/c 1
P 2 2 2
I m m a
P 4
P 41
I 41/a c d :2
P 3
P 31
P 3 1 m
R -3 c :H
P 6
P 63/m m c
P 2 3
I a -3 d
I 4/m c m (a+b-1/6,-a+b,c+1/4)
u+s,u,s: 38.19 36.66 1.53

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_sampled_model_density.py
P 1
P -1
P 1 2 1
C 1 2/c 1
P 2 2 2
I m m a
P 4
P 41
I 41/a c d :2
P 3
P 31
P 3 1 m
R -3 c :H
P 6
P 63/m m c
P 2 3
I a -3 d
I 4/m c m (a+b-1/6,-a+b,c+1/4)
usr+sys time: 297.00 seconds
wall clock time: 43.27 seconds

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_fast_nv1995.py
P 1
P -1
P 1 2 1
C 1 2/c 1
P 2 2 2
I m m a
P 4
P 41
I 41/a c d :2
P 3
P 31
P 3 1 m
R -3 c :H
P 6
P 63/m m c
P 2 3
I a -3 d
High symmetry space group skipped.
I 4/m c m (a+b-1/6,-a+b,c+1/4)
u+s,u,s: 111.02 110.69 0.33

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_geometry_restraints.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_geometry_restraints_lbfgs.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_geometry_restraints_2.py
Skipping exercise_with_zeolite(): input file not available
Traceback (most recent call last):
  File "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_geometry_restraints_2.py", line 691, in <module>
    exercise_all(sys.argv[1:])
  File "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_geometry_restraints_2.py", line 686, in exercise_all
    exercise_with_pdb(verbose=verbose)
  File "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_geometry_restraints_2.py", line 401, in exercise_with_pdb
    log=out)
  File "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/mmtbx/monomer_library/pdb_interpretation.py", line 3538, in run
    mon_lib_srv = server.server()
  File "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/mmtbx/monomer_library/server.py", line 218, in __init__
    list_cif = mon_lib_list_cif()
  File "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/mmtbx/monomer_library/server.py", line 64, in mon_lib_list_cif
    strict=strict)
  File "/var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/mmtbx/monomer_library/server.py", line 56, in __init__
    + ", ".join(mon_lib_env_vars))
mmtbx.monomer_library.server.MonomerLibraryServerError: Cannot find CCP4 monomer library. Please define one of these environment variables: MMTBX_CCP4_MONOMER_LIB, CLIBD_MON

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/development/make_cns_input.py
P 1
P -1
P 1 2 1
C 1 2/c 1
P 2 2 2
I m m a
P 4
P 41
I 41/a c d :2
P 3
P 31
P 3 1 m
R -3 c :H
P 6
P 63/m m c
P 2 3
I a -3 d
I 4/m c m (a+b-1/6,-a+b,c+1/4)
u+s,u,s: 5.29 5.22 0.07

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/development/tst_cns_epsilon.py
CNS not available.

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/development/tst_cns_hl.py
CNS not available.

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/development/run_shelx.py
SHELX not available.

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_pointgroup_tools.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/sub_lattice_tools.py
u+s,u,s: 0.95 0.89 0.06

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/rational_matrices_point_groups.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/cosets.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/reticular_pg_tools.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/reticular_twin_laws.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_find_best_cell.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_amplitude_normalisation.py
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/regression/tst_statistics_graphs.py
P 1
P -1
P 1 2 1
C 1 2/c 1
P 2 2 2
I m m a
P 4
P 41
I 41/a c d :2
P 3
P 31
P 3 1 m
R -3 c :H
P 6
P 63/m m c
P 2 3
I a -3 d
I 4/m c m (a+b-1/6,-a+b,c+1/4)
u+s,u,s: 11.63 11.53 0.10
OK

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/sgtbx/direct_space_asu/proto/tst_asu.py
u+s,u,s: 6.46 6.40 0.06

libtbx.python /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/work/cctbx_sources/cctbx/masks/tests/tst_flood_fill.py
OK


>>> Install cctbx-2010.03.29.2334-r1 into /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/image/ category sci-libs
 * removing unnessary files ...
  [ ok ]
>>> Completed installing cctbx-2010.03.29.2334-r1 into /var/tmp/portage/sci-libs/cctbx-2010.03.29.2334-r1/image/

strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment
   usr/lib/cctbx/cctbx_build/chiltbx/handle_test
   usr/lib/cctbx/cctbx_build/boost_adaptbx/tests/tst_optional_copy
   usr/lib/cctbx/cctbx_build/cctbx/sgtbx/direct_space_asu/proto/tst_asu
   usr/lib/cctbx/cctbx_build/cctbx/math/time_trigonometry
   usr/lib/cctbx/cctbx_build/scitbx/serialization/tst_base_256
   usr/lib/cctbx/cctbx_build/scitbx/lstbx/tests/tst_normal_equations
   usr/lib/cctbx/cctbx_build/scitbx/lbfgs/tst_lbfgs
   usr/lib/cctbx/cctbx_build/scitbx/matrix/tests/tst_cholesky
   usr/lib/cctbx/cctbx_build/scitbx/matrix/tests/tst_givens
   usr/lib/cctbx/cctbx_build/scitbx/matrix/tests/tst_householder
   usr/lib/cctbx/cctbx_build/scitbx/matrix/tests/tst_svd
   usr/lib/cctbx/cctbx_build/scitbx/lbfgsb/dev/driver2
   usr/lib/cctbx/cctbx_build/scitbx/lbfgsb/dev/driver1
   usr/lib/cctbx/cctbx_build/scitbx/lbfgsb/dev/driver3
   usr/lib/cctbx/cctbx_build/scitbx/fortran_io/tests/tst_numeric_parsers
   usr/lib/cctbx/cctbx_build/scitbx/fortran_io/tests/tst_numeric_manipulators
   usr/lib/cctbx/cctbx_build/scitbx/array_family/tst_af_5
   usr/lib/cctbx/cctbx_build/scitbx/array_family/tst_ref_matrix_facet
   usr/lib/cctbx/cctbx_build/scitbx/array_family/tst_af_3
   usr/lib/cctbx/cctbx_build/scitbx/array_family/tst_mat3
   usr/lib/cctbx/cctbx_build/scitbx/array_family/tst_optional_copy
   usr/lib/cctbx/cctbx_build/scitbx/array_family/tst_af_4
   usr/lib/cctbx/cctbx_build/scitbx/array_family/tst_sym_mat3
   usr/lib/cctbx/cctbx_build/scitbx/array_family/boost_python/regression_test_ext.so
   usr/lib/cctbx/cctbx_build/scitbx/array_family/tst_accessors
   usr/lib/cctbx/cctbx_build/scitbx/array_family/tst_vec3
   usr/lib/cctbx/cctbx_build/scitbx/array_family/tst_unsigned_float_arithmetic
   usr/lib/cctbx/cctbx_build/scitbx/array_family/tst_af_1
   usr/lib/cctbx/cctbx_build/scitbx/array_family/tst_af_2
   usr/lib/cctbx/cctbx_build/scitbx/math/tests/tst
   usr/lib/cctbx/cctbx_build/scitbx/error/tst_error
   usr/lib/cctbx/cctbx_build/scitbx/fftpack/timing/test0
   usr/lib/cctbx/cctbx_build/scitbx/fftpack/timing/fftpack_timer
   usr/lib/cctbx/cctbx_build/mmtbx/masks/tst_mask
   usr/lib/cctbx/cctbx_build/lib/mmtbx_alignment_ext.so
   usr/lib/cctbx/cctbx_build/lib/iotbx_pdb_ext.so
   usr/lib/cctbx/cctbx_build/lib/iotbx_detectors_bruker_ext.so
   usr/lib/cctbx/cctbx_build/lib/libomptbx.so
   usr/lib/cctbx/cctbx_build/lib/boost_tuple_ext.so
   usr/lib/cctbx/cctbx_build/lib/smtbx_array_family_ext.so
   usr/lib/cctbx/cctbx_build/lib/boost_python_meta_ext.so
   usr/lib/cctbx/cctbx_build/lib/scitbx_stl_set_ext.so
   usr/lib/cctbx/cctbx_build/lib/libclipper.so
   usr/lib/cctbx/cctbx_build/lib/iotbx_mtz_ext.so
   usr/lib/cctbx/cctbx_build/lib/scitbx_linalg_ext.so
   usr/lib/cctbx/cctbx_build/lib/cctbx_statistics_ext.so
   usr/lib/cctbx/cctbx_build/lib/scitbx_random_ext.so
   usr/lib/cctbx/cctbx_build/lib/scitbx_stl_map_ext.so
   usr/lib/cctbx/cctbx_build/lib/mmtbx_f_model_ext.so
   usr/lib/cctbx/cctbx_build/lib/mmtbx_scaling_ext.so
   usr/lib/cctbx/cctbx_build/lib/scitbx_rigid_body_ext.so
   usr/lib/cctbx/cctbx_build/lib/boost_optional_ext.so
   usr/lib/cctbx/cctbx_build/lib/libcctbx_sgtbx_asu.so
   usr/lib/cctbx/cctbx_build/lib/scitbx_fftpack_ext.so
   usr/lib/cctbx/cctbx_build/lib/cctbx_masks_ext.so
   usr/lib/cctbx/cctbx_build/lib/cctbx_adptbx_ext.so
   usr/lib/cctbx/cctbx_build/lib/libccp4io.so
   usr/lib/cctbx/cctbx_build/lib/libmmtbx_masks.so
   usr/lib/cctbx/cctbx_build/lib/cctbx_orientation_ext.so
   usr/lib/cctbx/cctbx_build/lib/iotbx_dtrek_ext.so
   usr/lib/cctbx/cctbx_build/lib/cctbx_miller_ext.so
   usr/lib/cctbx/cctbx_build/lib/mmtbx_max_lik_ext.so
   usr/lib/cctbx/cctbx_build/lib/librstbx.so
   usr/lib/cctbx/cctbx_build/lib/smtbx_refinement_constraints_ext.so
   usr/lib/cctbx/cctbx_build/lib/iotbx_xplor_ext.so
   usr/lib/cctbx/cctbx_build/lib/libscitbx_minpack.so
   usr/lib/cctbx/cctbx_build/lib/cctbx_eltbx_wavelengths_ext.so
   usr/lib/cctbx/cctbx_build/lib/cctbx_eltbx_xray_scattering_ext.so
   usr/lib/cctbx/cctbx_build/lib/mmtbx_bulk_solvent_ext.so
   usr/lib/cctbx/cctbx_build/lib/mmtbx_tls_ext.so
   usr/lib/cctbx/cctbx_build/lib/clipper_ext.so
   usr/lib/cctbx/cctbx_build/lib/smtbx_refinement_ext.so
   usr/lib/cctbx/cctbx_build/lib/cctbx_eltbx_sasaki_ext.so
   usr/lib/cctbx/cctbx_build/lib/omptbx_ext.so
   usr/lib/cctbx/cctbx_build/lib/cctbx_eltbx_fp_fdp_ext.so
   usr/lib/cctbx/cctbx_build/lib/cctbx_geometry_restraints_ext.so
   usr/lib/cctbx/cctbx_build/lib/mmtbx_masks_ext.so
   usr/lib/cctbx/cctbx_build/lib/iotbx_wildcard_ext.so
   usr/lib/cctbx/cctbx_build/lib/iotbx_detectors_ext.so
   usr/lib/cctbx/cctbx_build/lib/scitbx_array_family_shared_ext.so
   usr/lib/cctbx/cctbx_build/lib/mmtbx_dynamics_ext.so
   usr/lib/cctbx/cctbx_build/lib/iotbx_ccp4_map_ext.so
   usr/lib/cctbx/cctbx_build/lib/scitbx_minpack_ext.so
   usr/lib/cctbx/cctbx_build/lib/smtbx_refinement_least_squares_ext.so
   usr/lib/cctbx/cctbx_build/lib/boost_adaptbx_python_streambuf_test_ext.so
   usr/lib/cctbx/cctbx_build/lib/libiotbx_mtz.so
   usr/lib/cctbx/cctbx_build/lib/cctbx_sgtbx_ext.so
   usr/lib/cctbx/cctbx_build/lib/mmtbx_ncs_restraints_ext.so
   usr/lib/cctbx/cctbx_build/lib/std_pair_ext.so
   usr/lib/cctbx/cctbx_build/lib/scitbx_wigner_ext.so
   usr/lib/cctbx/cctbx_build/lib/iotbx_scalepack_ext.so
   usr/lib/cctbx/cctbx_build/lib/cctbx_eltbx_chemical_elements_ext.so
   usr/lib/cctbx/cctbx_build/lib/libcctbx.so
   usr/lib/cctbx/cctbx_build/lib/boost_python_hybrid_times_ext.so
   usr/lib/cctbx/cctbx_build/lib/scitbx_iso_surface_ext.so
   usr/lib/cctbx/cctbx_build/lib/fable_ext.so
   usr/lib/cctbx/cctbx_build/lib/cctbx_eltbx_covalent_radii_ext.so
   usr/lib/cctbx/cctbx_build/lib/smtbx_ab_initio_ext.so
   usr/lib/cctbx/cctbx_build/lib/scitbx_array_family_flex_ext.so
   usr/lib/cctbx/cctbx_build/lib/smtbx_stl_map_ext.so
   usr/lib/cctbx/cctbx_build/lib/cctbx_eltbx_icsd_radii_ext.so
   usr/lib/cctbx/cctbx_build/lib/cctbx_sgtbx_asu_ext.so
   usr/lib/cctbx/cctbx_build/lib/scitbx_math_ext.so
   usr/lib/cctbx/cctbx_build/lib/fftw3tbx_ext.so
   usr/lib/cctbx/cctbx_build/lib/cctbx_eltbx_neutron_ext.so
   usr/lib/cctbx/cctbx_build/lib/rstbx_ext.so
   usr/lib/cctbx/cctbx_build/lib/cctbx_emma_ext.so
   usr/lib/cctbx/cctbx_build/lib/libiotbx_pdb.so
   usr/lib/cctbx/cctbx_build/lib/cctbx_adp_restraints_ext.so
   usr/lib/cctbx/cctbx_build/lib/scitbx_lbfgsb_ext.so
   usr/lib/cctbx/cctbx_build/lib/boost_rational_ext.so
   usr/lib/cctbx/cctbx_build/lib/smtbx_structure_factors_direct_ext.so
   usr/lib/cctbx/cctbx_build/lib/cctbx_math_ext.so
   usr/lib/cctbx/cctbx_build/lib/libscitbx_slatec.so
   usr/lib/cctbx/cctbx_build/lib/cctbx_eltbx_henke_ext.so
   usr/lib/cctbx/cctbx_build/lib/iotbx_pdb_hierarchy_ext.so
   usr/lib/cctbx/cctbx_build/lib/scitbx_lstbx_ext.so
   usr/lib/cctbx/cctbx_build/lib/iotbx_shelx_ext.so
   usr/lib/cctbx/cctbx_build/lib/cctbx_eltbx_tiny_pse_ext.so
   usr/lib/cctbx/cctbx_build/lib/scitbx_sparse_ext.so
   usr/lib/cctbx/cctbx_build/lib/libboost_python.so
   usr/lib/cctbx/cctbx_build/lib/cctbx_xray_ext.so
   usr/lib/cctbx/cctbx_build/lib/scitbx_stl_vector_ext.so
   usr/lib/cctbx/cctbx_build/lib/cctbx_uctbx_ext.so
   usr/lib/cctbx/cctbx_build/lib/cctbx_array_family_flex_ext.so
   usr/lib/cctbx/cctbx_build/lib/rstbx_array_family_flex_ext.so
   usr/lib/cctbx/cctbx_build/lib/cctbx_dmtbx_ext.so
   usr/lib/cctbx/cctbx_build/lib/libscitbx_boost_python.so
   usr/lib/cctbx/cctbx_build/lib/scitbx_boost_python_slice_ext.so
   usr/lib/cctbx/cctbx_build/lib/scitbx_lbfgs_ext.so
   usr/lib/cctbx/cctbx_build/lib/cctbx_crystal_ext.so
   usr/lib/cctbx/cctbx_build/lib/mmtbx_utils_ext.so
   usr/lib/cctbx/cctbx_build/lib/cctbx_translation_search_ext.so
   usr/lib/cctbx/cctbx_build/lib/cctbx_maptbx_ext.so
   usr/lib/cctbx/cctbx_build/lib/cctbx_symmetry_search_ext.so
   usr/lib/cctbx/cctbx_build/lib/mmtbx_rsr_ext.so
   usr/lib/cctbx/cctbx_build/exe_dev/clipper.sanity_check
   usr/lib/cctbx/cctbx_build/exe_dev/cctbx.getting_started
   usr/lib/cctbx/cctbx_build/exe_dev/cctbx.find_distances
   usr/lib/cctbx/cctbx_build/exe_dev/cctbx.sys_abs_equiv_space_groups
   usr/lib/cctbx/cctbx_build/exe_dev/cctbx.sym_equiv_sites
   usr/lib/cctbx/cctbx_build/exe_dev/cctbx.lattice_symmetry
   usr/lib/cctbx/cctbx_build/exe_dev/cctbx.convert_ccp4_symop_lib
   usr/lib/cctbx/cctbx_build/exe_dev/clipper.symtest

 * QA Notice: Files built without respecting LDFLAGS have been detected
 *  Please include the following list of files in your report:
 * /usr/lib/cctbx/cctbx_build/chiltbx/handle_test
 * /usr/lib/cctbx/cctbx_build/boost_adaptbx/tests/tst_optional_copy
 * /usr/lib/cctbx/cctbx_build/cctbx/sgtbx/direct_space_asu/proto/tst_asu
 * /usr/lib/cctbx/cctbx_build/cctbx/math/time_trigonometry
 * /usr/lib/cctbx/cctbx_build/scitbx/serialization/tst_base_256
 * /usr/lib/cctbx/cctbx_build/scitbx/lstbx/tests/tst_normal_equations
 * /usr/lib/cctbx/cctbx_build/scitbx/lbfgs/tst_lbfgs
 * /usr/lib/cctbx/cctbx_build/scitbx/matrix/tests/tst_cholesky
 * /usr/lib/cctbx/cctbx_build/scitbx/matrix/tests/tst_givens
 * /usr/lib/cctbx/cctbx_build/scitbx/matrix/tests/tst_householder
 * /usr/lib/cctbx/cctbx_build/scitbx/matrix/tests/tst_svd
 * /usr/lib/cctbx/cctbx_build/scitbx/lbfgsb/dev/driver2
 * /usr/lib/cctbx/cctbx_build/scitbx/lbfgsb/dev/driver1
 * /usr/lib/cctbx/cctbx_build/scitbx/lbfgsb/dev/driver3
 * /usr/lib/cctbx/cctbx_build/scitbx/fortran_io/tests/tst_numeric_parsers
 * /usr/lib/cctbx/cctbx_build/scitbx/fortran_io/tests/tst_numeric_manipulators
 * /usr/lib/cctbx/cctbx_build/scitbx/array_family/tst_af_5
 * /usr/lib/cctbx/cctbx_build/scitbx/array_family/tst_ref_matrix_facet
 * /usr/lib/cctbx/cctbx_build/scitbx/array_family/tst_af_3
 * /usr/lib/cctbx/cctbx_build/scitbx/array_family/tst_mat3
 * /usr/lib/cctbx/cctbx_build/scitbx/array_family/tst_optional_copy
 * /usr/lib/cctbx/cctbx_build/scitbx/array_family/tst_af_4
 * /usr/lib/cctbx/cctbx_build/scitbx/array_family/tst_sym_mat3
 * /usr/lib/cctbx/cctbx_build/scitbx/array_family/tst_accessors
 * /usr/lib/cctbx/cctbx_build/scitbx/array_family/tst_vec3
 * /usr/lib/cctbx/cctbx_build/scitbx/array_family/tst_unsigned_float_arithmetic
 * /usr/lib/cctbx/cctbx_build/scitbx/array_family/tst_af_1
 * /usr/lib/cctbx/cctbx_build/scitbx/array_family/tst_af_2
 * /usr/lib/cctbx/cctbx_build/scitbx/math/tests/tst
 * /usr/lib/cctbx/cctbx_build/scitbx/error/tst_error
 * /usr/lib/cctbx/cctbx_build/scitbx/fftpack/timing/test0
 * /usr/lib/cctbx/cctbx_build/scitbx/fftpack/timing/fftpack_timer
 * /usr/lib/cctbx/cctbx_build/mmtbx/masks/tst_mask
 * /usr/lib/cctbx/cctbx_build/lib/libcctbx_sgtbx_asu.so
 * /usr/lib/cctbx/cctbx_build/exe_dev/clipper.sanity_check
 * /usr/lib/cctbx/cctbx_build/exe_dev/cctbx.getting_started
 * /usr/lib/cctbx/cctbx_build/exe_dev/cctbx.find_distances
 * /usr/lib/cctbx/cctbx_build/exe_dev/cctbx.sys_abs_equiv_space_groups
 * /usr/lib/cctbx/cctbx_build/exe_dev/cctbx.sym_equiv_sites
 * /usr/lib/cctbx/cctbx_build/exe_dev/cctbx.lattice_symmetry
 * /usr/lib/cctbx/cctbx_build/exe_dev/cctbx.convert_ccp4_symop_lib
 * /usr/lib/cctbx/cctbx_build/exe_dev/clipper.symtest

 * Compilation and optimization of Python modules placed outside of site-packages directories for CPython 2.7 ...
  [ ok ]
 * Gentoo contact information ...
herds:
    sci-chemistry
maintainers:
    jlec@gentoo.org