Build log

mothur-1.7.2:20100826-233830.log (text/plain), 19.85 KB, created by Diego Elio Pettenò (RETIRED) on 2010-08-27 09:18:38 UTC

 * CPV:  sci-biology/mothur-1.7.2
 * REPO: gentoo
 * USE:  elibc_glibc kernel_linux test userland_GNU x86
>>> Unpacking source...
>>> Unpacking mothur-1.7.2.zip to /var/tmp/portage/sci-biology/mothur-1.7.2/work
>>> Source unpacked in /var/tmp/portage/sci-biology/mothur-1.7.2/work
>>> Preparing source in /var/tmp/portage/sci-biology/mothur-1.7.2/work/Mothur.source ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-biology/mothur-1.7.2/work/Mothur.source ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-biology/mothur-1.7.2/work/Mothur.source ...
make -j14 
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 sharedutilities.cpp -c -I. -o ./sharedutilities.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 treegroupscommand.cpp -c -I. -o ./treegroupscommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 bootstrapsharedcommand.cpp -c -I. -o ./bootstrapsharedcommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 matrixoutputcommand.cpp -c -I. -o ./matrixoutputcommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 getoturepcommand.cpp -c -I. -o ./getoturepcommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 screenseqscommand.cpp -c -I. -o ./screenseqscommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 chimera.cpp -c -I. -o ./chimera.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 decalc.cpp -c -I. -o ./decalc.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 readotucommand.cpp -c -I. -o ./readotucommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 readdistcommand.cpp -c -I. -o ./readdistcommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 commandfactory.cpp -c -I. -o ./commandfactory.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 alignment.cpp -c -I. -o ./alignment.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 alignmentcell.cpp -c -I. -o ./alignmentcell.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 gotohoverlap.cpp -c -I. -o ./gotohoverlap.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 overlap.cpp -c -I. -o ./overlap.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 needlemanoverlap.cpp -c -I. -o ./needlemanoverlap.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 blastalign.cpp -c -I. -o ./blastalign.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 noalign.cpp -c -I. -o ./noalign.o
blastalign.cpp: In member function ‘virtual void BlastAlignment::align(std::string, std::string)’:
blastalign.cpp:64:30: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 suffixdb.cpp -c -I. -o ./suffixdb.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 suffixnodes.cpp -c -I. -o ./suffixnodes.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 suffixtree.cpp -c -I. -o ./suffixtree.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 blastdb.cpp -c -I. -o ./blastdb.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 nast.cpp -c -I. -o ./nast.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 nastreport.cpp -c -I. -o ./nastreport.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 boneh.cpp -c -I. -o ./boneh.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 efron.cpp -c -I. -o ./efron.o
blastdb.cpp: In member function ‘virtual void BlastDB::generateDB()’:
blastdb.cpp:112:34: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result
blastdb.cpp: In member function ‘virtual std::vector<int> BlastDB::findClosestSequences(Sequence*, int)’:
blastdb.cpp:55:31: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 solow.cpp -c -I. -o ./solow.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 unifracweightedcommand.cpp -c -I. -o ./unifracweightedcommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 weighted.cpp -c -I. -o ./weighted.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 unweighted.cpp -c -I. -o ./unweighted.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 unifracunweightedcommand.cpp -c -I. -o ./unifracunweightedcommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 getsabundcommand.cpp -c -I. -o ./getsabundcommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 getrabundcommand.cpp -c -I. -o ./getrabundcommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 bellerophon.cpp -c -I. -o ./bellerophon.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 pintail.cpp -c -I. -o ./pintail.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 sharedanderbergs.cpp -c -I. -o ./sharedanderbergs.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 venncommand.cpp -c -I. -o ./venncommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 venn.cpp -c -I. -o ./venn.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 fullmatrix.cpp -c -I. -o ./fullmatrix.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 heatmap.cpp -c -I. -o ./heatmap.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 heatmapcommand.cpp -c -I. -o ./heatmapcommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 libshuffcommand.cpp -c -I. -o ./libshuffcommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 nocommands.cpp -c -I. -o ./nocommands.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 sharedbraycurtis.cpp -c -I. -o ./sharedbraycurtis.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 sharedkulczynski.cpp -c -I. -o ./sharedkulczynski.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 sharedlennon.cpp -c -I. -o ./sharedlennon.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 sharedkulczynskicody.cpp -c -I. -o ./sharedkulczynskicody.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 sharedmorisitahorn.cpp -c -I. -o ./sharedmorisitahorn.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 sharedochiai.cpp -c -I. -o ./sharedochiai.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 readcolumn.cpp -c -I. -o ./readcolumn.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 readotu.cpp -c -I. -o ./readotu.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 readphylip.cpp -c -I. -o ./readphylip.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 consensuscommand.cpp -c -I. -o ./consensuscommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 heatmapsimcommand.cpp -c -I. -o ./heatmapsimcommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 heatmapsim.cpp -c -I. -o ./heatmapsim.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 optionparser.cpp -c -I. -o ./optionparser.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 filterseqscommand.cpp -c -I. -o ./filterseqscommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 goodscoverage.cpp -c -I. -o ./goodscoverage.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 sequencedb.cpp -c -I. -o ./sequencedb.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 sharedjackknife.cpp -c -I. -o ./sharedjackknife.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 sharedmarczewski.cpp -c -I. -o ./sharedmarczewski.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 aligncommand.cpp -c -I. -o ./aligncommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 treemap.cpp -c -I. -o ./treemap.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 parsimonycommand.cpp -c -I. -o ./parsimonycommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 parsimony.cpp -c -I. -o ./parsimony.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 seqsummarycommand.cpp -c -I. -o ./seqsummarycommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 chimeraseqscommand.cpp -c -I. -o ./chimeraseqscommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 sharedlistvector.cpp -c -I. -o ./sharedlistvector.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 tree.cpp -c -I. -o ./tree.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 readtree.cpp -c -I. -o ./readtree.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 sharedsobscollectsummary.cpp -c -I. -o ./sharedsobscollectsummary.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 deconvolutecommand.cpp -c -I. -o ./deconvolutecommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 listseqscommand.cpp -c -I. -o ./listseqscommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 getseqscommand.cpp -c -I. -o ./getseqscommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 removeseqscommand.cpp -c -I. -o ./removeseqscommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 systemcommand.cpp -c -I. -o ./systemcommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 binsequencecommand.cpp -c -I. -o ./binsequencecommand.o
systemcommand.cpp: In member function ‘virtual int SystemCommand::execute()’:
systemcommand.cpp:54:26: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 distancecommand.cpp -c -I. -o ./distancecommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 ace.cpp -c -I. -o ./ace.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 averagelinkage.cpp -c -I. -o ./averagelinkage.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 bootstrap.cpp -c -I. -o ./bootstrap.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 calculator.cpp -c -I. -o ./calculator.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 chao1.cpp -c -I. -o ./chao1.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 cluster.cpp -c -I. -o ./cluster.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 clustercommand.cpp -c -I. -o ./clustercommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 collect.cpp -c -I. -o ./collect.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 collectcommand.cpp -c -I. -o ./collectcommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 collectsharedcommand.cpp -c -I. -o ./collectsharedcommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 commandoptionparser.cpp -c -I. -o ./commandoptionparser.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 completelinkage.cpp -c -I. -o ./completelinkage.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 database.cpp -c -I. -o ./database.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 engine.cpp -c -I. -o ./engine.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 fastamap.cpp -c -I. -o ./fastamap.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 fileoutput.cpp -c -I. -o ./fileoutput.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 globaldata.cpp -c -I. -o ./globaldata.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 groupmap.cpp -c -I. -o ./groupmap.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 helpcommand.cpp -c -I. -o ./helpcommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 inputdata.cpp -c -I. -o ./inputdata.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 jackknife.cpp -c -I. -o ./jackknife.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 kmer.cpp -c -I. -o ./kmer.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 kmerdb.cpp -c -I. -o ./kmerdb.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 listvector.cpp -c -I. -o ./listvector.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 mothur.cpp -c -I. -o ./mothur.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 nameassignment.cpp -c -I. -o ./nameassignment.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 npshannon.cpp -c -I. -o ./npshannon.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 ordervector.cpp -c -I. -o ./ordervector.o
mothur.cpp: In function ‘int main(int, char**)’:
mothur.cpp:27:19: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 progress.cpp -c -I. -o ./progress.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 quitcommand.cpp -c -I. -o ./quitcommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 rabundvector.cpp -c -I. -o ./rabundvector.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 rarecalc.cpp -c -I. -o ./rarecalc.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 raredisplay.cpp -c -I. -o ./raredisplay.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 rarefact.cpp -c -I. -o ./rarefact.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 rarefactcommand.cpp -c -I. -o ./rarefactcommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 rarefactsharedcommand.cpp -c -I. -o ./rarefactsharedcommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 sabundvector.cpp -c -I. -o ./sabundvector.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 sequence.cpp -c -I. -o ./sequence.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 shannon.cpp -c -I. -o ./shannon.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 sharedace.cpp -c -I. -o ./sharedace.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 sharedchao1.cpp -c -I. -o ./sharedchao1.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 sharedcommand.cpp -c -I. -o ./sharedcommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 sharedjabund.cpp -c -I. -o ./sharedjabund.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 sharedjclass.cpp -c -I. -o ./sharedjclass.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 sharedjest.cpp -c -I. -o ./sharedjest.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 sharedordervector.cpp -c -I. -o ./sharedordervector.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 sharedrabundvector.cpp -c -I. -o ./sharedrabundvector.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 sharedsabundvector.cpp -c -I. -o ./sharedsabundvector.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 sharedsobs.cpp -c -I. -o ./sharedsobs.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 sharedsorabund.cpp -c -I. -o ./sharedsorabund.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 sharedsorclass.cpp -c -I. -o ./sharedsorclass.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 sharedsorest.cpp -c -I. -o ./sharedsorest.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 sharedthetan.cpp -c -I. -o ./sharedthetan.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 sharedthetayc.cpp -c -I. -o ./sharedthetayc.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 simpson.cpp -c -I. -o ./simpson.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 singlelinkage.cpp -c -I. -o ./singlelinkage.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 sparsematrix.cpp -c -I. -o ./sparsematrix.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 summarycommand.cpp -c -I. -o ./summarycommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 summarysharedcommand.cpp -c -I. -o ./summarysharedcommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 uvest.cpp -c -I. -o ./uvest.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 validcalculator.cpp -c -I. -o ./validcalculator.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 validparameter.cpp -c -I. -o ./validparameter.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 treenode.cpp -c -I. -o ./treenode.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 readtreecommand.cpp -c -I. -o ./readtreecommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 reversecommand.cpp -c -I. -o ./reversecommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 trimseqscommand.cpp -c -I. -o ./trimseqscommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 slibshuff.cpp -c -I. -o ./slibshuff.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 libshuff.cpp -c -I. -o ./libshuff.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 dlibshuff.cpp -c -I. -o ./dlibshuff.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 mergefilecommand.cpp -c -I. -o ./mergefilecommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 coverage.cpp -c -I. -o ./coverage.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 whittaker.cpp -c -I. -o ./whittaker.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 getgroupcommand.cpp -c -I. -o ./getgroupcommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 getlabelcommand.cpp -c -I. -o ./getlabelcommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 getlinecommand.cpp -c -I. -o ./getlinecommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 secondarystructurecommand.cpp -c -I. -o ./secondarystructurecommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 chimeracheckrdp.cpp -c -I. -o ./chimeracheckrdp.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 hclustercommand.cpp -c -I. -o ./hclustercommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 hcluster.cpp -c -I. -o ./hcluster.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 getlistcountcommand.cpp -c -I. -o ./getlistcountcommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 readcluster.cpp -c -I. -o ./readcluster.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 ccode.cpp -c -I. -o ./ccode.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 taxonomyequalizer.cpp -c -I. -o ./taxonomyequalizer.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 phylotypecommand.cpp -c -I. -o ./phylotypecommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 classifyseqscommand.cpp -c -I. -o ./classifyseqscommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 classify.cpp -c -I. -o ./classify.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 phylotree.cpp -c -I. -o ./phylotree.o
readcluster.cpp: In member function ‘void ReadCluster::createHClusterFile()’:
readcluster.cpp:45:27: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 bayesian.cpp -c -I. -o ./bayesian.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 alignmentdb.cpp -c -I. -o ./alignmentdb.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 knn.cpp -c -I. -o ./knn.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 chimeraslayer.cpp -c -I. -o ./chimeraslayer.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 slayer.cpp -c -I. -o ./slayer.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 getsharedotucommand.cpp -c -I. -o ./getsharedotucommand.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 maligner.cpp -c -I. -o ./maligner.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 bergerparker.cpp -c -I. -o ./bergerparker.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 bstick.cpp -c -I. -o ./bstick.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 sharedkstest.cpp -c -I. -o ./sharedkstest.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 qstat.cpp -c -I. -o ./qstat.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 shen.cpp -c -I. -o ./shen.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 logsd.cpp -c -I. -o ./logsd.o
i686-pc-linux-gnu-g++ -O2 -pipe  -O3 geom.cpp -c -I. -o ./geom.o
i686-pc-linux-gnu-g++  \
	./sharedutilities.o\
	./treegroupscommand.o\
	./bootstrapsharedcommand.o\
	./matrixoutputcommand.o\
	./getoturepcommand.o\
	./screenseqscommand.o\
	./chimera.o\
	./decalc.o\
	./readotucommand.o\
	./readdistcommand.o\
	./commandfactory.o\
	./alignment.o\
	./alignmentcell.o\
	./gotohoverlap.o\
	./overlap.o\
	./needlemanoverlap.o\
	./blastalign.o\
	./noalign.o\
	./suffixdb.o\
	./suffixnodes.o\
	./suffixtree.o\
	./blastdb.o\
	./nast.o\
	./nastreport.o\
	./boneh.o\
	./efron.o\
	./solow.o\
	./unifracweightedcommand.o\
	./weighted.o\
	./unweighted.o\
	./unifracunweightedcommand.o\
	./getsabundcommand.o\
	./getrabundcommand.o\
	./bellerophon.o\
	./pintail.o\
	./sharedanderbergs.o\
	./venncommand.o\
	./venn.o\
	./fullmatrix.o\
	./heatmap.o\
	./heatmapcommand.o\
	./libshuffcommand.o\
	./nocommands.o\
	./sharedbraycurtis.o\
	./sharedkulczynski.o\
	./sharedlennon.o\
	./sharedkulczynskicody.o\
	./sharedmorisitahorn.o\
	./sharedochiai.o\
	./readcolumn.o\
	./readotu.o\
	./readphylip.o\
	./consensuscommand.o\
	./heatmapsimcommand.o\
	./heatmapsim.o\
	./optionparser.o\
	./filterseqscommand.o\
	./goodscoverage.o\
	./sequencedb.o\
	./sharedjackknife.o\
	./sharedmarczewski.o\
	./aligncommand.o\
	./treemap.o\
	./parsimonycommand.o\
	./parsimony.o\
	./seqsummarycommand.o\
	./chimeraseqscommand.o\
	./sharedlistvector.o\
	./tree.o\
	./readtree.o\
	./sharedsobscollectsummary.o\
	./deconvolutecommand.o\
	./listseqscommand.o\
	./getseqscommand.o\
	./removeseqscommand.o\
	./systemcommand.o\
	./binsequencecommand.o\
	./distancecommand.o\
	./ace.o\
	./averagelinkage.o\
	./bootstrap.o\
	./calculator.o\
	./chao1.o\
	./cluster.o\
	./clustercommand.o\
	./collect.o\
	./collectcommand.o\
	./collectsharedcommand.o\
	./commandoptionparser.o\
	./completelinkage.o\
	./database.o\
	./engine.o\
	./fastamap.o\
	./fileoutput.o\
	./globaldata.o\
	./groupmap.o\
	./helpcommand.o\
	./inputdata.o\
	./jackknife.o\
	./kmer.o\
	./kmerdb.o\
	./listvector.o\
	./mothur.o\
	./nameassignment.o\
	./npshannon.o\
	./ordervector.o\
	./progress.o\
	./quitcommand.o\
	./rabundvector.o\
	./rarecalc.o\
	./raredisplay.o\
	./rarefact.o\
	./rarefactcommand.o\
	./rarefactsharedcommand.o\
	./sabundvector.o\
	./sequence.o\
	./shannon.o\
	./sharedace.o\
	./sharedchao1.o\
	./sharedcommand.o\
	./sharedjabund.o\
	./sharedjclass.o\
	./sharedjest.o\
	./sharedordervector.o\
	./sharedrabundvector.o\
	./sharedsabundvector.o\
	./sharedsobs.o\
	./sharedsorabund.o\
	./sharedsorclass.o\
	./sharedsorest.o\
	./sharedthetan.o\
	./sharedthetayc.o\
	./simpson.o\
	./singlelinkage.o\
	./sparsematrix.o\
	./summarycommand.o\
	./summarysharedcommand.o\
	./uvest.o\
	./validcalculator.o\
	./validparameter.o\
	./treenode.o\
	./readtreecommand.o\
	./reversecommand.o\
	./trimseqscommand.o\
	./slibshuff.o\
	./libshuff.o\
	./dlibshuff.o\
	./mergefilecommand.o\
	./coverage.o\
	./whittaker.o\
	./getgroupcommand.o\
	./getlabelcommand.o\
	./getlinecommand.o\
	./secondarystructurecommand.o\
	./chimeracheckrdp.o\
	./hclustercommand.o\
	./hcluster.o\
	./getlistcountcommand.o\
	./readcluster.o\
	./ccode.o\
	./taxonomyequalizer.o\
	./phylotypecommand.o\
	./classifyseqscommand.o\
	./classify.o\
	./phylotree.o\
	./bayesian.o\
	./alignmentdb.o\
	./knn.o\
	./chimeraslayer.o\
	./slayer.o\
	./getsharedotucommand.o\
	./maligner.o\
	./bergerparker.o\
	./bstick.o\
	./sharedkstest.o\
	./qstat.o\
	./shen.o\
	./logsd.o\
	./geom.o\
	-o mothur
>>> Source compiled.
>>> Test phase [none]: sci-biology/mothur-1.7.2

>>> Install mothur-1.7.2 into /var/tmp/portage/sci-biology/mothur-1.7.2/image/ category sci-biology
>>> Completed installing mothur-1.7.2 into /var/tmp/portage/sci-biology/mothur-1.7.2/image/

strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment
   usr/bin/mothur

 * QA Notice: Files built without respecting LDFLAGS have been detected
 *  Please include the following list of files in your report:
 * /usr/bin/mothur

 * Gentoo contact information ...
herds:
    sci-biology
maintainers:
    [e-mail]