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Gentoo's Bugzilla – Attachment 242821 Details for
Bug 332643
sci-chemistry/molden-4.8-r1 - ex: applet not found
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emerge log
molden-emerge-fail.txt (text/plain), 32.55 KB, created by
Benj FitzPatrick
on 2010-08-13 18:18:30 UTC
(
hide
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Description:
emerge log
Filename:
MIME Type:
Creator:
Benj FitzPatrick
Created:
2010-08-13 18:18:30 UTC
Size:
32.55 KB
patch
obsolete
>localhost matlab-2010a # emerge molden >Calculating dependencies... done! > >>>> Verifying ebuild manifests > >>>> Emerging (1 of 1) sci-chemistry/molden-4.8-r1 > * molden4.8.tar.gz RMD160 SHA1 SHA256 size ;-) ... >[ ok ] > * checking ebuild checksums ;-) ... >[ ok ] > * checking auxfile checksums ;-) ... >[ ok ] > * checking miscfile checksums ;-) ... >[ ok ] > * CPV: sci-chemistry/molden-4.8-r1 > * REPO: funtoo > * USE: amd64 elibc_glibc kernel_linux multilib opengl userland_GNU > * You need one of these Fortran Compilers: g77 gfortran > * Installed are: gfortran >>>> Unpacking source... >>>> Unpacking molden4.8.tar.gz to /var/tmp/portage/sci-chemistry/molden-4.8-r1/work > * Applying patches for selected FORTRAN compiler: gfortran >>>> Source unpacked in /var/tmp/portage/sci-chemistry/molden-4.8-r1/work >>>> Preparing source in /var/tmp/portage/sci-chemistry/molden-4.8-r1/work/molden4.8 ... > * Applying molden-4.8-ambfor.patch ... >[ ok ] > * Applying molden-4.8-overflow.patch ... >[ ok ] > * Applying molden-4.8-ldflags.patch ... >[ ok ] > * Applying molden-4.7-implicit-dec.patch ... >[ ok ] >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-chemistry/molden-4.8-r1/work/molden4.8 ... >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-chemistry/molden-4.8-r1/work/molden4.8 ... > * Building Molden... >make -j2 -j1 'CC=x86_64-pc-linux-gnu-gcc -march=opteron -O2 -pipe' FC=gfortran LDR=gfortran FFLAGS= >gfortran -c -o atomdens.o atomdens.f >gfortran -c -o molden.o molden.f >gfortran -c -o above.o above.f >gfortran -c -o actcal.o actcal.f >gfortran -c -o basprt.o basprt.f >basprt.f:23.44: > > & 3hs ,3hsp ,3hd ,3hf ,3hg / > 1 >Warning: Extension: Hollerith constant at (1) >basprt.f:19.20: > > data namesh/3hs ,3hsp ,3hspd,3hf ,3hg , > 1 >Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1) >basprt.f:19.26: > > data namesh/3hs ,3hsp ,3hspd,3hf ,3hg , > 1 >Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1) >basprt.f:19.32: > > data namesh/3hs ,3hsp ,3hspd,3hf ,3hg , > 1 >Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1) >basprt.f:19.38: > > data namesh/3hs ,3hsp ,3hspd,3hf ,3hg , > 1 >Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1) >basprt.f:19.44: > > data namesh/3hs ,3hsp ,3hspd,3hf ,3hg , > 1 >Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1) >basprt.f:20.20: > > & 3h???,3hp ,3hd ,3h???,3hg , > 1 >Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1) >basprt.f:20.26: > > & 3h???,3hp ,3hd ,3h???,3hg , > 1 >Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1) >basprt.f:20.32: > > & 3h???,3hp ,3hd ,3h???,3hg , > 1 >Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1) >basprt.f:20.38: > > & 3h???,3hp ,3hd ,3h???,3hg , > 1 >Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1) >basprt.f:20.44: > > & 3h???,3hp ,3hd ,3h???,3hg , > 1 >Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1) >basprt.f:21.20: > > & 3hs ,3hsp ,3hd ,3hf ,3hg , > 1 >Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1) >basprt.f:21.26: > > & 3hs ,3hsp ,3hd ,3hf ,3hg , > 1 >Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1) >basprt.f:21.32: > > & 3hs ,3hsp ,3hd ,3hf ,3hg , > 1 >Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1) >basprt.f:21.38: > > & 3hs ,3hsp ,3hd ,3hf ,3hg , > 1 >Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1) >basprt.f:21.44: > > & 3hs ,3hsp ,3hd ,3hf ,3hg , > 1 >Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1) >basprt.f:22.20: > > & 3hs ,3hsp ,3hd ,3hf ,3hg , > 1 >Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1) >basprt.f:22.26: > > & 3hs ,3hsp ,3hd ,3hf ,3hg , > 1 >Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1) >basprt.f:22.32: > > & 3hs ,3hsp ,3hd ,3hf ,3hg , > 1 >Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1) >basprt.f:22.38: > > & 3hs ,3hsp ,3hd ,3hf ,3hg , > 1 >Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1) >basprt.f:22.44: > > & 3hs ,3hsp ,3hd ,3hf ,3hg , > 1 >Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1) >basprt.f:23.20: > > & 3hs ,3hsp ,3hd ,3hf ,3hg / > 1 >Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1) >basprt.f:23.26: > > & 3hs ,3hsp ,3hd ,3hf ,3hg / > 1 >Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1) >basprt.f:23.32: > > & 3hs ,3hsp ,3hd ,3hf ,3hg / > 1 >Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1) >basprt.f:23.38: > > & 3hs ,3hsp ,3hd ,3hf ,3hg / > 1 >Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1) >basprt.f:23.44: > > & 3hs ,3hsp ,3hd ,3hf ,3hg / > 1 >Warning: Extension: Conversion from HOLLERITH to INTEGER(4) at (1) >gfortran -c -o calc.o calc.f >gfortran -c -o caldis.o caldis.f >gfortran -c -o calfa.o calfa.f >gfortran -c -o cntour.o cntour.f >gfortran -c -o cnvgam.o cnvgam.f >gfortran -c -o cnvgau.o cnvgau.f >gfortran -c -o convzmat.o convzmat.f >gfortran -c -o cross.o cross.f >gfortran -c -o crprod.o crprod.f >gfortran -c -o datin.o datin.f >gfortran -c -o defpc.o defpc.f >gfortran -c -o defrad.o defrad.f >gfortran -c -o del.o del.f >gfortran -c -o denmak.o denmak.f >gfortran -c -o densmat.o densmat.f >gfortran -c -o distot.o distot.f >gfortran -c -o dmat.o dmat.f >gfortran -c -o docent.o docent.f >gfortran -c -o draw.o draw.f >gfortran -c -o euler.o euler.f >gfortran -c -o eulerh.o eulerh.f >gfortran -c -o files.o files.f >gfortran -c -o fndcal.o fndcal.f >gfortran -c -o gampoi.o gampoi.f >gfortran -c -o gaupoi.o gaupoi.f >gfortran -c -o gaussian.o gaussian.f >gfortran -c -o geogam.o geogam.f >gfortran -c -o geogau.o geogau.f >gfortran -c -o getmul.o getmul.f >gfortran -c -o getpoi.o getpoi.f >gfortran -c -o getreal.o getreal.f >gfortran -c -o gmmcnv.o gmmcnv.f >gfortran -c -o grdcal.o grdcal.f >gfortran -c -o gstr.o gstr.f >gfortran -c -o hidedr.o hidedr.f >gfortran -c -o impsc.o impsc.f >gfortran -c -o locatc.o locatc.f >gfortran -c -o maxmin.o maxmin.f >gfortran -c -o mdout.o mdout.f >gfortran -c -o mmcnv.o mmcnv.f >gfortran -c -o mopaco.o mopaco.f >gfortran -c -o mopin.o mopin.f >gfortran -c -o mulprt.o mulprt.f >gfortran -c -o occin.o occin.f >gfortran -c -o oriin.o oriin.f >gfortran -c -o parang.o parang.f >gfortran -c -o pareul.o pareul.f >gfortran -c -o parfc.o parfc.f >gfortran -c -o parori.o parori.f >gfortran -c -o parpla.o parpla.f >gfortran -c -o parstp.o parstp.f >gfortran -c -o planky.o planky.f >gfortran -c -o plend.o plend.f >gfortran -c -o plini.o plini.f >gfortran -c -o plmol.o plmol.f >gfortran -c -o plotgh.o plotgh.f >gfortran -c -o plotgr.o plotgr.f >plotgr.f:71.72: > > if (iplot.eq.0) assign 20 to istmnt > 1 >Warning: Deleted feature: ASSIGN statement at (1) >plotgr.f:72.72: > > if (iplot.eq.1) assign 40 to istmnt > 1 >Warning: Deleted feature: ASSIGN statement at (1) >plotgr.f:73.72: > > if (iplot.eq.2) assign 60 to istmnt > 1 >Warning: Deleted feature: ASSIGN statement at (1) >plotgr.f:74.72: > > if (iplot.eq.4) assign 100 to istmnt > 1 >Warning: Deleted feature: ASSIGN statement at (1) >plotgr.f:76.72: > > if (iplot.eq.0) assign 10 to istmnt > 1 >Warning: Deleted feature: ASSIGN statement at (1) >plotgr.f:77.72: > > if (iplot.eq.1) assign 30 to istmnt > 1 >Warning: Deleted feature: ASSIGN statement at (1) >plotgr.f:78.72: > > if (iplot.eq.2) assign 50 to istmnt > 1 >Warning: Deleted feature: ASSIGN statement at (1) >plotgr.f:79.72: > > if (iplot.eq.4) assign 90 to istmnt > 1 >Warning: Deleted feature: ASSIGN statement at (1) >plotgr.f:81.47: > > if (iplot.eq.0.or.iplot.eq.1) write(iun4,istmnt)dx,dy > 1 >Warning: Deleted feature: ASSIGNED variable in FORMAT tag at (1) >plotgr.f:83.19: > > write(iun4,istmnt)char(27),int(dx*389),int(dy*389) > 1 >Warning: Deleted feature: ASSIGNED variable in FORMAT tag at (1) >plotgr.f:120.19: > > write(iun4,istmnt)int(dx*2000),int(dy*2000)+125 > 1 >Warning: Deleted feature: ASSIGNED variable in FORMAT tag at (1) >gfortran -c -o plotin.o plotin.f >gfortran -c -o plpost.o plpost.f >gfortran -c -o prev.o prev.f >gfortran -c -o proato.o proato.f >gfortran -c -o procnv.o procnv.f >gfortran -c -o progeo.o progeo.f >gfortran -c -o rdbas.o rdbas.f >gfortran -c -o rdcor.o rdcor.f >gfortran -c -o rdgam.o rdgam.f >gfortran -c -o rdgaus.o rdgaus.f >gfortran -c -o rdinfo.o rdinfo.f >gfortran -c -o rdpdb.o rdpdb.f >gfortran -c -o rdvect.o rdvect.f >gfortran -c -o reada.o reada.f >gfortran -c -o readel.o readel.f >gfortran -c -o readvv.o readvv.f >gfortran -c -o renorm.o renorm.f >gfortran -c -o rmomen.o rmomen.f >gfortran -c -o rota.o rota.f >gfortran -c -o rotatg.o rotatg.f >gfortran -c -o rotb.o rotb.f >gfortran -c -o rotc.o rotc.f >gfortran -c -o rotcor.o rotcor.f >gfortran -c -o rotd.o rotd.f >gfortran -c -o rotfir.o rotfir.f >gfortran -c -o rotm.o rotm.f >gfortran -c -o rotmom.o rotmom.f >gfortran -c -o scback.o scback.f >gfortran -c -o search.o search.f >gfortran -c -o searchd.o searchd.f >gfortran -c -o setang.o setang.f >gfortran -c -o setbas.o setbas.f >gfortran -c -o settc.o settc.f >gfortran -c -o shsort.o shsort.f >gfortran -c -o site.o site.f >gfortran -c -o slater.o slater.f >gfortran -c -o stoc.o stoc.f >gfortran -c -o tessa.o tessa.f >gfortran -c -o tk4014.o tk4014.f >gfortran -c -o tocap.o tocap.f >gfortran -c -o tocapf.o tocapf.f >gfortran -c -o tomold.o tomold.f >gfortran -c -o under.o under.f >gfortran -c -o vaxdum.o vaxdum.f >gfortran -c -o vclr.o vclr.f >gfortran -c -o vec.o vec.f >gfortran -c -o vlen.o vlen.f >gfortran -c -o vsc1.o vsc1.f >gfortran -c -o wrinfo.o wrinfo.f >gfortran -c -o zread.o zread.f >gfortran -c -o samino.o samino.f >gfortran -c -o prtcal.o prtcal.f >gfortran -c -o actss.o actss.f >gfortran -c -o actami.o actami.f >gfortran -c -o plden.o plden.f >gfortran -c -o heaps.o heaps.f >gfortran -c -o den3d.o den3d.f >gfortran -c -o dencnt.o dencnt.f >gfortran -c -o plhead.o plhead.f >gfortran -c -o pltab.o pltab.f >gfortran -c -o eucmol.o eucmol.f >gfortran -c -o pl3dm.o pl3dm.f >gfortran -c -o plbox.o plbox.f >gfortran -c -o selsol.o selsol.f >gfortran -c -o atmd.o atmd.f >gfortran -c -o dolift.o dolift.f >gfortran -c -o spaced.o spaced.f >gfortran -c -o snypnt.o snypnt.f >gfortran -c -o eulstr.o eulstr.f >gfortran -c -o calct.o calct.f >gfortran -c -o coeffs.o coeffs.f >gfortran -c -o epint.o epint.f >gfortran -c -o espot.o espot.f >gfortran -c -o fcij.o fcij.f >gfortran -c -o fmt.o fmt.f >gfortran -c -o genaos.o genaos.f >gfortran -c -o rys.o rys.f >gfortran -c -o ryspol.o ryspol.f >gfortran -c -o rysrot.o rysrot.f >gfortran -c -o thrcen.o thrcen.f >gfortran -c -o twocen.o twocen.f >gfortran -c -o ifblen.o ifblen.f >gfortran -c -o rott.o rott.f >gfortran -c -o plmolp.o plmolp.f >gfortran -c -o wrzmat.o wrzmat.f >gfortran -c -o rdchx.o rdchx.f >rdchx.f:1622.72: > > assign 1070 to istmnt > 1 >Warning: Deleted feature: ASSIGN statement at (1) >rdchx.f:1625.72: > > assign 1075 to istmnt > 1 >Warning: Deleted feature: ASSIGN statement at (1) >rdchx.f:1640.19: > > read(iun2,istmnt,end=1000,err=1000) (icon(i),i=1,jleft) > 1 >Warning: Deleted feature: ASSIGNED variable in FORMAT tag at (1) >gfortran -c -o obin.o obin.f >gfortran -c -o pred.o pred.f >gfortran -c -o gargpl.o gargpl.f >gfortran -c -o inferr.o inferr.f >gfortran -c -o freqs.o freqs.f >gfortran -c -o getmop.o getmop.f >gfortran -c -o brklin.o brklin.f >gfortran -c -o getzm.o getzm.f >gfortran -c -o xyzcoo.o xyzcoo.f >gfortran -c -o geomop.o geomop.f >gfortran -c -o dumzm.o dumzm.f >gfortran -c -o getxyz.o getxyz.f >gfortran -c -o espchrg.o espchrg.f >gfortran -c -o proxim.o proxim.f >gfortran -c -o rdgamu.o rdgamu.f >gfortran -c -o plvrml.o plvrml.f >gfortran -c -o molsint.o molsint.f >gfortran -c -o runjob.o runjob.f >gfortran -c -o rdmsf.o rdmsf.f >gfortran -c -o wrmsf.o wrmsf.f >gfortran -c -o rdmolf.o rdmolf.f >gfortran -c -o adf_fun.o adf_fun.f >gfortran -c -o rotpol.o rotpol.f >gfortran -c -o extbas.o extbas.f >gfortran -c -o rdcpmd.o rdcpmd.f >gfortran -c -o eem.o eem.f >eem.f:821.72: > > 10 assign 30 to next > 1 >Warning: Deleted feature: ASSIGN statement at (1) >eem.f:826.19: > > 20 go to next,(30, 50, 70, 110) > 1 >Warning: Deleted feature: Assigned GOTO statement at (1) >eem.f:828.72: > > assign 50 to next > 1 >Warning: Deleted feature: ASSIGN statement at (1) >eem.f:837.72: > > assign 70 to next > 1 >Warning: Deleted feature: ASSIGN statement at (1) >eem.f:843.72: > > assign 110 to next > 1 >Warning: Deleted feature: ASSIGN statement at (1) >gfortran -c -o asspmf.o asspmf.f >gfortran -c -o srfcal.o srfcal.f >gfortran -c -o rdqchm.o rdqchm.f >gfortran -c -o rdorca.o rdorca.f >gfortran -c -o rdmaux.o rdmaux.f >gfortran -c -o mpdum.o mpdum.f >x86_64-pc-linux-gnu-gcc -march=opteron -O2 -pipe -c -I/usr/X11R6/include -DDOBACK -DHASTIMER -DCOLOR_OFFSET=0.0 -c -o >xwin.o xwin.c >xwin.c: In function 'DebugStructure': >xwin.c:13366: warning: format '%d' expects type 'int', but argument 3 has type 'struct QBOXSTRU *' >xwin.c: In function 'doamb': >xwin.c:23937: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:23962: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:23969: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:23978: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:23985: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:23997: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:24004: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:24013: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:24020: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:24034: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:24041: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:24050: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:24057: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:24068: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:24075: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:24084: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:24091: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c: In function 'exstr_': >xwin.c:24181: warning: not enough variable arguments to fit a sentinel >xwin.c:24136: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c: In function 'LZWwrite': >xwin.c:31571: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result >xwin.c: In function 'compress': >xwin.c:31670: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result >xwin.c: In function 'ToGIF': >xwin.c:31717: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result >xwin.c: In function 'write_spectrum': >xwin.c:36834: warning: unknown conversion type character 0xa in format >xwin.c: In function 'LoadResrot': >xwin.c:37277: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result >xwin.c:37281: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result >xwin.c:37285: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result >xwin.c: In function 'dos2u': >xwin.c:44976: warning: ignoring return value of 'mktemp', declared with attribute warn_unused_result >xwin.c: In function 'LigandHydroPBE': >xwin.c:46261: warning: format '%[^"' expects type 'char *', but argument 3 has type 'char (*)[10]' >In file included from /usr/include/string.h:640, > from /usr/include/X11/Xos.h:62, > from xwin.c:14: >In function 'strncpy', > inlined from 'NewActiveStruct' at xwin.c:13653: >/usr/include/bits/string3.h:122: warning: call to __builtin___strncpy_chk will always overflow destination buffer >gfortran -Wl,-O1 -Wl,--sort-common -Wl,--as-needed -o molden atomdens.o molden.o above.o actcal.o basprt.o calc.o caldis.o >calfa.o cntour.o cnvgam.o cnvgau.o convzmat.o cross.o crprod.o datin.o defpc.o defrad.o del.o denmak.o densmat.o distot.o >dmat.o docent.o draw.o euler.o eulerh.o files.o fndcal.o gampoi.o gaupoi.o gaussian.o geogam.o geogau.o getmul.o getpoi.o >getreal.o gmmcnv.o grdcal.o gstr.o hidedr.o impsc.o locatc.o maxmin.o mdout.o mmcnv.o mopaco.o mopin.o mulprt.o occin.o >oriin.o parang.o pareul.o parfc.o parori.o parpla.o parstp.o planky.o plend.o plini.o plmol.o plotgh.o plotgr.o plotin.o >plpost.o prev.o proato.o procnv.o progeo.o rdbas.o rdcor.o rdgam.o rdgaus.o rdinfo.o rdpdb.o rdvect.o reada.o readel.o >readvv.o renorm.o rmomen.o rota.o rotatg.o rotb.o rotc.o rotcor.o rotd.o rotfir.o rotm.o rotmom.o scback.o search.o >searchd.o setang.o setbas.o settc.o shsort.o site.o slater.o stoc.o tessa.o tk4014.o tocap.o tocapf.o tomold.o under.o >vaxdum.o vclr.o vec.o vlen.o vsc1.o wrinfo.o zread.o samino.o prtcal.o actss.o actami.o plden.o heaps.o den3d.o dencnt.o >plhead.o pltab.o eucmol.o pl3dm.o plbox.o selsol.o atmd.o dolift.o spaced.o snypnt.o eulstr.o calct.o coeffs.o epint.o >espot.o fcij.o fmt.o genaos.o rys.o ryspol.o rysrot.o thrcen.o twocen.o ifblen.o rott.o plmolp.o wrzmat.o rdchx.o obin.o >pred.o gargpl.o inferr.o freqs.o getmop.o brklin.o getzm.o xyzcoo.o geomop.o dumzm.o getxyz.o espchrg.o proxim.o rdgamu.o >plvrml.o molsint.o runjob.o rdmsf.o wrmsf.o rdmolf.o adf_fun.o rotpol.o extbas.o rdcpmd.o eem.o asspmf.o srfcal.o rdqchm.o >rdorca.o rdmaux.o mpdum.o xwin.o -L/usr/X11R6/lib -lX11 -lm >xwin.o: In function `DoWGET': >xwin.c:(.text+0x30ff3): warning: the use of `tmpnam' is dangerous, better use `mkstemp' >xwin.o: In function `dos2u': >xwin.c:(.text+0x302ce): warning: the use of `mktemp' is dangerous, better use `mkstemp' >x86_64-pc-linux-gnu-gcc -march=opteron -O2 -pipe -c -I/usr/X11R6/include -DDOBACK -DHASTIMER -DCOLOR_OFFSET=0.0 -DDOGL -c >xwin.c -o xwingl.o >xwin.c: In function 'DebugStructure': >xwin.c:13366: warning: format '%d' expects type 'int', but argument 3 has type 'struct QBOXSTRU *' >xwin.c: In function 'doamb': >xwin.c:23937: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:23962: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:23969: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:23978: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:23985: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:23997: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:24004: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:24013: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:24020: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:24034: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:24041: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:24050: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:24057: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:24068: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:24075: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:24084: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:24091: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c: In function 'exstr_': >xwin.c:24181: warning: not enough variable arguments to fit a sentinel >xwin.c:24136: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c: In function 'LZWwrite': >xwin.c:31571: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result >xwin.c: In function 'compress': >xwin.c:31670: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result >xwin.c: In function 'ToGIF': >xwin.c:31717: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result >xwin.c: In function 'write_spectrum': >xwin.c:36834: warning: unknown conversion type character 0xa in format >xwin.c: In function 'LoadResrot': >xwin.c:37277: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result >xwin.c:37281: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result >xwin.c:37285: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result >xwin.c: In function 'putbyte': >xwin.c:41343: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result >xwin.c: In function 'putshort': >xwin.c:41354: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result >xwin.c: In function 'WOGLGIF': >xwin.c:41449: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result >xwin.c: In function 'save_rgb': >xwin.c:41529: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result >xwin.c:41538: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result >xwin.c:41545: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result >xwin.c:41552: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result >xwin.c: In function 'save_bmp': >xwin.c:41617: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result >xwin.c:41624: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result >xwin.c:41627: warning: ignoring return value of 'fwrite', declared with attribute warn_unused_result >xwin.c: In function 'molsrf': >xwin.c:43122: warning: ignoring return value of 'system', declared with attribute warn_unused_result >xwin.c:43237: warning: ignoring return value of 'fscanf', declared with attribute warn_unused_result >xwin.c: In function 'dos2u': >xwin.c:44976: warning: ignoring return value of 'mktemp', declared with attribute warn_unused_result >xwin.c: In function 'LigandHydroPBE': >xwin.c:46261: warning: format '%[^"' expects type 'char *', but argument 3 has type 'char (*)[10]' >xwin.c: In function 'ogrdmol': >xwin.c:46859: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result >xwin.c:46862: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result >xwin.c:46866: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result >xwin.c: In function 'rdoglfile': >xwin.c:47218: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result >xwin.c:47227: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result >xwin.c:47260: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result >xwin.c:47422: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result >xwin.c:47473: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result >xwin.c:47507: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result >xwin.c:47522: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result >xwin.c:47541: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result >xwin.c:47554: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result >In file included from /usr/include/string.h:640, > from /usr/include/X11/Xos.h:62, > from xwin.c:14: >In function 'strncpy', > inlined from 'NewActiveStruct' at xwin.c:13653: >/usr/include/bits/string3.h:122: warning: call to __builtin___strncpy_chk will always overflow destination buffer >gfortran -Wl,-O1 -Wl,--sort-common -Wl,--as-needed -o gmolden atomdens.o molden.o above.o actcal.o basprt.o calc.o >caldis.o calfa.o cntour.o cnvgam.o cnvgau.o convzmat.o cross.o crprod.o datin.o defpc.o defrad.o del.o denmak.o densmat.o >distot.o dmat.o docent.o draw.o euler.o eulerh.o files.o fndcal.o gampoi.o gaupoi.o gaussian.o geogam.o geogau.o getmul.o >getpoi.o getreal.o gmmcnv.o grdcal.o gstr.o hidedr.o impsc.o locatc.o maxmin.o mdout.o mmcnv.o mopaco.o mopin.o mulprt.o >occin.o oriin.o parang.o pareul.o parfc.o parori.o parpla.o parstp.o planky.o plend.o plini.o plmol.o plotgh.o plotgr.o >plotin.o plpost.o prev.o proato.o procnv.o progeo.o rdbas.o rdcor.o rdgam.o rdgaus.o rdinfo.o rdpdb.o rdvect.o reada.o >readel.o readvv.o renorm.o rmomen.o rota.o rotatg.o rotb.o rotc.o rotcor.o rotd.o rotfir.o rotm.o rotmom.o scback.o >search.o searchd.o setang.o setbas.o settc.o shsort.o site.o slater.o stoc.o tessa.o tk4014.o tocap.o tocapf.o tomold.o >under.o vaxdum.o vclr.o vec.o vlen.o vsc1.o wrinfo.o zread.o samino.o prtcal.o actss.o actami.o plden.o heaps.o den3d.o >dencnt.o plhead.o pltab.o eucmol.o pl3dm.o plbox.o selsol.o atmd.o dolift.o spaced.o snypnt.o eulstr.o calct.o coeffs.o >epint.o espot.o fcij.o fmt.o genaos.o rys.o ryspol.o rysrot.o thrcen.o twocen.o ifblen.o rott.o plmolp.o wrzmat.o rdchx.o >obin.o pred.o gargpl.o inferr.o freqs.o getmop.o brklin.o getzm.o xyzcoo.o geomop.o dumzm.o getxyz.o espchrg.o proxim.o >rdgamu.o plvrml.o molsint.o runjob.o rdmsf.o wrmsf.o rdmolf.o adf_fun.o rotpol.o extbas.o rdcpmd.o eem.o asspmf.o srfcal.o >rdqchm.o rdorca.o rdmaux.o mpdum.o xwingl.o -L/usr/X11R6/lib -lGLU -lGL -lXmu -lX11 -lm >xwingl.o: In function `molsrf': >xwin.c:(.text+0x2a6be): warning: the use of `tmpnam' is dangerous, better use `mkstemp' >xwingl.o: In function `dos2u': >xwin.c:(.text+0x389ce): warning: the use of `mktemp' is dangerous, better use `mkstemp' >make -C ambfor FC=gfortran FFLAGS="" LDR="gfortran" CFLAGS="-c -I/usr/X11R6/include -DDOBACK -DHASTIMER >-DCOLOR_OFFSET=0.0" >make[1]: Entering directory `/var/tmp/portage/sci-chemistry/molden-4.8-r1/work/molden4.8/ambfor' >gfortran -c ambfor.f -o ambfor.o >x86_64-pc-linux-gnu-gcc -march=opteron -O2 -pipe -c -I/usr/X11R6/include -DDOBACK -DHASTIMER -DCOLOR_OFFSET=0.0 -c -o >alloc.o alloc.c >gfortran -c -o angle.o angle.f >gfortran -c -o bond.o bond.f >gfortran -c -o charge.o charge.f >gfortran -c -o conn.o conn.f >gfortran -c -o enegrd.o enegrd.f >gfortran -c -o getinp.o getinp.f >gfortran -c -o param.o param.f >gfortran -c -o tors.o tors.f >gfortran -c -o vdwlj.o vdwlj.f >gfortran -c -o math.o math.f >gfortran -c -o optimise.o optimise.f >gfortran -c -o switch.o switch.f >gfortran -c -o wrtout.o wrtout.f >gfortran -c -o pbc.o pbc.f >gfortran -o ambfor ambfor.o alloc.o angle.o bond.o charge.o conn.o enegrd.o getinp.o param.o tors.o vdwlj.o math.o >optimise.o switch.o wrtout.o pbc.o -lm >gfortran -c -o md.o md.f >gfortran -c -o verlet.o verlet.f >x86_64-pc-linux-gnu-gcc -march=opteron -O2 -pipe -c -I/usr/X11R6/include -DDOBACK -DHASTIMER -DCOLOR_OFFSET=0.0 -DMD -c >alloc.c -o allocmd.o >gfortran -o ambmd md.o verlet.o allocmd.o angle.o bond.o charge.o conn.o enegrd.o getinp.o param.o tors.o vdwlj.o math.o >optimise.o switch.o wrtout.o pbc.o -lm >make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/molden-4.8-r1/work/molden4.8/ambfor' >make -C surf depend >make[1]: Entering directory `/var/tmp/portage/sci-chemistry/molden-4.8-r1/work/molden4.8/surf' >making dependencies... >ex: applet not found >make[1]: *** [depend] Error 1 >make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/molden-4.8-r1/work/molden4.8/surf' >make: *** [surf/surf] Error 2 > * ERROR: sci-chemistry/molden-4.8-r1 failed: > * molden emake failed > * > * Call stack: > * ebuild.sh, line 47: Called src_compile > * environment, line 3426: Called die > * The specific snippet of code: > * emake -j1 "${args[@]}" || die "molden emake failed"; > * > * If you need support, post the output of 'emerge --info =sci-chemistry/molden-4.8-r1', > * the complete build log and the output of 'emerge -pqv =sci-chemistry/molden-4.8-r1'. > * The complete build log is located at '/var/tmp/portage/sci-chemistry/molden-4.8-r1/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/molden-4.8-r1/temp/environment'. > * S: '/var/tmp/portage/sci-chemistry/molden-4.8-r1/work/molden4.8' >
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