Go to:
Gentoo Home
Documentation
Forums
Lists
Bugs
Planet
Store
Wiki
Get Gentoo!
Gentoo's Bugzilla – Attachment 242673 Details for
Bug 330507
dev-libs/nss-3.12.6-r2 file collision with sci-biology/emboss-6.1.0-r1 on /usr/bin/digest
Home
|
New
–
[Ex]
|
Browse
|
Search
|
Privacy Policy
|
[?]
|
Reports
|
Requests
|
Help
|
New Account
|
Log In
[x]
|
Forgot Password
Login:
[x]
[patch]
emboss/Makefile.in.patch
Makefile.in.patch (text/plain), 135.28 KB, created by
Martin Mokrejš
on 2010-08-12 20:31:09 UTC
(
hide
)
Description:
emboss/Makefile.in.patch
Filename:
MIME Type:
Creator:
Martin Mokrejš
Created:
2010-08-12 20:31:09 UTC
Size:
135.28 KB
patch
obsolete
>--- emboss/Makefile.in.old 2010-08-12 22:00:17.000000000 +0200 >+++ emboss/Makefile.in 2010-08-12 22:04:35.000000000 +0200 >@@ -1,4 +1,4 @@ >-# Makefile.in generated by automake 1.11 from Makefile.am. >+# Makefile.in generated by automake 1.11.1 from Makefile.am. > # @configure_input@ > > # Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002, >@@ -56,7 +56,7 @@ > dbifasta$(EXEEXT) dbiflat$(EXEEXT) dbigcg$(EXEEXT) \ > dbxfasta$(EXEEXT) dbxflat$(EXEEXT) dbxgcg$(EXEEXT) \ > degapseq$(EXEEXT) density$(EXEEXT) descseq$(EXEEXT) \ >- diffseq$(EXEEXT) digest$(EXEEXT) distmat$(EXEEXT) \ >+ diffseq$(EXEEXT) tryptic_digest$(EXEEXT) distmat$(EXEEXT) \ > dotmatcher$(EXEEXT) dotpath$(EXEEXT) dottup$(EXEEXT) \ > dreg$(EXEEXT) edialign$(EXEEXT) einverted$(EXEEXT) \ > embossdata$(EXEEXT) embossversion$(EXEEXT) emma$(EXEEXT) \ >@@ -109,11 +109,7 @@ > subdir = emboss > DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in COPYING > ACLOCAL_M4 = $(top_srcdir)/aclocal.m4 >-am__aclocal_m4_deps = $(top_srcdir)/m4/amd64.m4 \ >- $(top_srcdir)/m4/general.m4 $(top_srcdir)/m4/grout.m4 \ >- $(top_srcdir)/m4/java.m4 $(top_srcdir)/m4/lf_x11.m4 \ >- $(top_srcdir)/m4/pngdriver.m4 $(top_srcdir)/m4/sgi.m4 \ >- $(top_srcdir)/configure.in >+am__aclocal_m4_deps = $(top_srcdir)/configure.in > am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \ > $(ACLOCAL_M4) > mkinstalldirs = $(SHELL) $(top_srcdir)/mkinstalldirs >@@ -124,1951 +120,1732 @@ > am_aaindexextract_OBJECTS = aaindexextract.$(OBJEXT) > aaindexextract_OBJECTS = $(am_aaindexextract_OBJECTS) > aaindexextract_LDADD = $(LDADD) >-am__DEPENDENCIES_1 = > @ISCYGWIN_FALSE@aaindexextract_DEPENDENCIES = \ > @ISCYGWIN_FALSE@ ../nucleus/libnucleus.la ../ajax/libajaxg.la \ >-@ISCYGWIN_FALSE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_FALSE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../ajax/libajax.la ../plplot/libeplplot.la > @ISCYGWIN_TRUE@aaindexextract_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_abiview_OBJECTS = abiview.$(OBJEXT) > abiview_OBJECTS = $(am_abiview_OBJECTS) > abiview_LDADD = $(LDADD) > @ISCYGWIN_FALSE@abiview_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@abiview_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_acdc_OBJECTS = acdc.$(OBJEXT) > acdc_OBJECTS = $(am_acdc_OBJECTS) > acdc_LDADD = $(LDADD) > @ISCYGWIN_FALSE@acdc_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@acdc_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_acdlog_OBJECTS = acdlog.$(OBJEXT) > acdlog_OBJECTS = $(am_acdlog_OBJECTS) > acdlog_LDADD = $(LDADD) > @ISCYGWIN_FALSE@acdlog_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@acdlog_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_acdpretty_OBJECTS = acdpretty.$(OBJEXT) > acdpretty_OBJECTS = $(am_acdpretty_OBJECTS) > acdpretty_LDADD = $(LDADD) > @ISCYGWIN_FALSE@acdpretty_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@acdpretty_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_acdtable_OBJECTS = acdtable.$(OBJEXT) > acdtable_OBJECTS = $(am_acdtable_OBJECTS) > acdtable_LDADD = $(LDADD) > @ISCYGWIN_FALSE@acdtable_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@acdtable_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_acdtrace_OBJECTS = acdtrace.$(OBJEXT) > acdtrace_OBJECTS = $(am_acdtrace_OBJECTS) > acdtrace_LDADD = $(LDADD) > @ISCYGWIN_FALSE@acdtrace_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@acdtrace_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_acdvalid_OBJECTS = acdvalid.$(OBJEXT) > acdvalid_OBJECTS = $(am_acdvalid_OBJECTS) > acdvalid_LDADD = $(LDADD) > @ISCYGWIN_FALSE@acdvalid_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@acdvalid_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_acdxsd_OBJECTS = acdxsd.$(OBJEXT) > acdxsd_OBJECTS = $(am_acdxsd_OBJECTS) > acdxsd_LDADD = $(LDADD) > @ISCYGWIN_FALSE@acdxsd_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@acdxsd_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_ajtest_OBJECTS = ajtest.$(OBJEXT) > ajtest_OBJECTS = $(am_ajtest_OBJECTS) > ajtest_LDADD = $(LDADD) > @ISCYGWIN_FALSE@ajtest_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@ajtest_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_aligncopy_OBJECTS = aligncopy.$(OBJEXT) > aligncopy_OBJECTS = $(am_aligncopy_OBJECTS) > aligncopy_LDADD = $(LDADD) > @ISCYGWIN_FALSE@aligncopy_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@aligncopy_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_aligncopypair_OBJECTS = aligncopypair.$(OBJEXT) > aligncopypair_OBJECTS = $(am_aligncopypair_OBJECTS) > aligncopypair_LDADD = $(LDADD) > @ISCYGWIN_FALSE@aligncopypair_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@aligncopypair_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_antigenic_OBJECTS = antigenic.$(OBJEXT) > antigenic_OBJECTS = $(am_antigenic_OBJECTS) > antigenic_LDADD = $(LDADD) > @ISCYGWIN_FALSE@antigenic_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@antigenic_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_backtranambig_OBJECTS = backtranambig.$(OBJEXT) > backtranambig_OBJECTS = $(am_backtranambig_OBJECTS) > backtranambig_LDADD = $(LDADD) > @ISCYGWIN_FALSE@backtranambig_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@backtranambig_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_backtranseq_OBJECTS = backtranseq.$(OBJEXT) > backtranseq_OBJECTS = $(am_backtranseq_OBJECTS) > backtranseq_LDADD = $(LDADD) > @ISCYGWIN_FALSE@backtranseq_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@backtranseq_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_banana_OBJECTS = banana.$(OBJEXT) > banana_OBJECTS = $(am_banana_OBJECTS) > banana_LDADD = $(LDADD) > @ISCYGWIN_FALSE@banana_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@banana_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_biosed_OBJECTS = biosed.$(OBJEXT) > biosed_OBJECTS = $(am_biosed_OBJECTS) > biosed_LDADD = $(LDADD) > @ISCYGWIN_FALSE@biosed_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@biosed_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_btwisted_OBJECTS = btwisted.$(OBJEXT) > btwisted_OBJECTS = $(am_btwisted_OBJECTS) > btwisted_LDADD = $(LDADD) > @ISCYGWIN_FALSE@btwisted_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@btwisted_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_cai_OBJECTS = cai.$(OBJEXT) > cai_OBJECTS = $(am_cai_OBJECTS) > cai_LDADD = $(LDADD) > @ISCYGWIN_FALSE@cai_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@cai_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_chaos_OBJECTS = chaos.$(OBJEXT) > chaos_OBJECTS = $(am_chaos_OBJECTS) > chaos_LDADD = $(LDADD) > @ISCYGWIN_FALSE@chaos_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@chaos_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_charge_OBJECTS = charge.$(OBJEXT) > charge_OBJECTS = $(am_charge_OBJECTS) > charge_LDADD = $(LDADD) > @ISCYGWIN_FALSE@charge_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@charge_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_checktrans_OBJECTS = checktrans.$(OBJEXT) > checktrans_OBJECTS = $(am_checktrans_OBJECTS) > checktrans_LDADD = $(LDADD) > @ISCYGWIN_FALSE@checktrans_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@checktrans_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_chips_OBJECTS = chips.$(OBJEXT) > chips_OBJECTS = $(am_chips_OBJECTS) > chips_LDADD = $(LDADD) > @ISCYGWIN_FALSE@chips_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@chips_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_cirdna_OBJECTS = cirdna.$(OBJEXT) > cirdna_OBJECTS = $(am_cirdna_OBJECTS) > cirdna_LDADD = $(LDADD) > @ISCYGWIN_FALSE@cirdna_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@cirdna_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_codcmp_OBJECTS = codcmp.$(OBJEXT) > codcmp_OBJECTS = $(am_codcmp_OBJECTS) > codcmp_LDADD = $(LDADD) > @ISCYGWIN_FALSE@codcmp_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@codcmp_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > codcopy_SOURCES = codcopy.c > codcopy_OBJECTS = codcopy.$(OBJEXT) > codcopy_LDADD = $(LDADD) > @ISCYGWIN_FALSE@codcopy_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@codcopy_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_coderet_OBJECTS = coderet.$(OBJEXT) > coderet_OBJECTS = $(am_coderet_OBJECTS) > coderet_LDADD = $(LDADD) > @ISCYGWIN_FALSE@coderet_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@coderet_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_complex_OBJECTS = complex.$(OBJEXT) > complex_OBJECTS = $(am_complex_OBJECTS) > complex_LDADD = $(LDADD) > @ISCYGWIN_FALSE@complex_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@complex_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_compseq_OBJECTS = compseq.$(OBJEXT) > compseq_OBJECTS = $(am_compseq_OBJECTS) > compseq_LDADD = $(LDADD) > @ISCYGWIN_FALSE@compseq_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@compseq_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_cons_OBJECTS = cons.$(OBJEXT) > cons_OBJECTS = $(am_cons_OBJECTS) > cons_LDADD = $(LDADD) > @ISCYGWIN_FALSE@cons_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@cons_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_consambig_OBJECTS = consambig.$(OBJEXT) > consambig_OBJECTS = $(am_consambig_OBJECTS) > consambig_LDADD = $(LDADD) > @ISCYGWIN_FALSE@consambig_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@consambig_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_corbatest_OBJECTS = corbatest.$(OBJEXT) > corbatest_OBJECTS = $(am_corbatest_OBJECTS) > corbatest_LDADD = $(LDADD) > @ISCYGWIN_FALSE@corbatest_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@corbatest_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_cpgplot_OBJECTS = cpgplot.$(OBJEXT) > cpgplot_OBJECTS = $(am_cpgplot_OBJECTS) > cpgplot_LDADD = $(LDADD) > @ISCYGWIN_FALSE@cpgplot_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@cpgplot_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_cpgreport_OBJECTS = cpgreport.$(OBJEXT) > cpgreport_OBJECTS = $(am_cpgreport_OBJECTS) > cpgreport_LDADD = $(LDADD) > @ISCYGWIN_FALSE@cpgreport_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@cpgreport_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_cusp_OBJECTS = cusp.$(OBJEXT) > cusp_OBJECTS = $(am_cusp_OBJECTS) > cusp_LDADD = $(LDADD) > @ISCYGWIN_FALSE@cusp_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@cusp_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_cutgextract_OBJECTS = cutgextract.$(OBJEXT) > cutgextract_OBJECTS = $(am_cutgextract_OBJECTS) > cutgextract_LDADD = $(LDADD) > @ISCYGWIN_FALSE@cutgextract_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@cutgextract_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_cutseq_OBJECTS = cutseq.$(OBJEXT) > cutseq_OBJECTS = $(am_cutseq_OBJECTS) > cutseq_LDADD = $(LDADD) > @ISCYGWIN_FALSE@cutseq_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@cutseq_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_dan_OBJECTS = dan.$(OBJEXT) > dan_OBJECTS = $(am_dan_OBJECTS) > dan_LDADD = $(LDADD) > @ISCYGWIN_FALSE@dan_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@dan_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_dbiblast_OBJECTS = dbiblast.$(OBJEXT) > dbiblast_OBJECTS = $(am_dbiblast_OBJECTS) > dbiblast_LDADD = $(LDADD) > @ISCYGWIN_FALSE@dbiblast_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@dbiblast_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_dbifasta_OBJECTS = dbifasta.$(OBJEXT) > dbifasta_OBJECTS = $(am_dbifasta_OBJECTS) > dbifasta_LDADD = $(LDADD) > @ISCYGWIN_FALSE@dbifasta_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@dbifasta_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_dbiflat_OBJECTS = dbiflat.$(OBJEXT) > dbiflat_OBJECTS = $(am_dbiflat_OBJECTS) > dbiflat_LDADD = $(LDADD) > @ISCYGWIN_FALSE@dbiflat_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@dbiflat_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_dbigcg_OBJECTS = dbigcg.$(OBJEXT) > dbigcg_OBJECTS = $(am_dbigcg_OBJECTS) > dbigcg_LDADD = $(LDADD) > @ISCYGWIN_FALSE@dbigcg_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@dbigcg_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_dbxfasta_OBJECTS = dbxfasta.$(OBJEXT) > dbxfasta_OBJECTS = $(am_dbxfasta_OBJECTS) > dbxfasta_LDADD = $(LDADD) > @ISCYGWIN_FALSE@dbxfasta_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@dbxfasta_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_dbxflat_OBJECTS = dbxflat.$(OBJEXT) > dbxflat_OBJECTS = $(am_dbxflat_OBJECTS) > dbxflat_LDADD = $(LDADD) > @ISCYGWIN_FALSE@dbxflat_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@dbxflat_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_dbxgcg_OBJECTS = dbxgcg.$(OBJEXT) > dbxgcg_OBJECTS = $(am_dbxgcg_OBJECTS) > dbxgcg_LDADD = $(LDADD) > @ISCYGWIN_FALSE@dbxgcg_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@dbxgcg_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_degapseq_OBJECTS = degapseq.$(OBJEXT) > degapseq_OBJECTS = $(am_degapseq_OBJECTS) > degapseq_LDADD = $(LDADD) > @ISCYGWIN_FALSE@degapseq_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@degapseq_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_density_OBJECTS = density.$(OBJEXT) > density_OBJECTS = $(am_density_OBJECTS) > density_LDADD = $(LDADD) > @ISCYGWIN_FALSE@density_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@density_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_descseq_OBJECTS = descseq.$(OBJEXT) > descseq_OBJECTS = $(am_descseq_OBJECTS) > descseq_LDADD = $(LDADD) > @ISCYGWIN_FALSE@descseq_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@descseq_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_diffseq_OBJECTS = diffseq.$(OBJEXT) > diffseq_OBJECTS = $(am_diffseq_OBJECTS) > diffseq_LDADD = $(LDADD) > @ISCYGWIN_FALSE@diffseq_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@diffseq_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >-am_digest_OBJECTS = digest.$(OBJEXT) >-digest_OBJECTS = $(am_digest_OBJECTS) >-digest_LDADD = $(LDADD) >-@ISCYGWIN_FALSE@digest_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >-@ISCYGWIN_TRUE@digest_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_distmat_OBJECTS = distmat.$(OBJEXT) > distmat_OBJECTS = $(am_distmat_OBJECTS) > distmat_LDADD = $(LDADD) > @ISCYGWIN_FALSE@distmat_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@distmat_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_dotmatcher_OBJECTS = dotmatcher.$(OBJEXT) > dotmatcher_OBJECTS = $(am_dotmatcher_OBJECTS) > dotmatcher_LDADD = $(LDADD) > @ISCYGWIN_FALSE@dotmatcher_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@dotmatcher_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_dotpath_OBJECTS = dotpath.$(OBJEXT) > dotpath_OBJECTS = $(am_dotpath_OBJECTS) > dotpath_LDADD = $(LDADD) > @ISCYGWIN_FALSE@dotpath_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@dotpath_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_dottup_OBJECTS = dottup.$(OBJEXT) > dottup_OBJECTS = $(am_dottup_OBJECTS) > dottup_LDADD = $(LDADD) > @ISCYGWIN_FALSE@dottup_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@dottup_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_dreg_OBJECTS = dreg.$(OBJEXT) > dreg_OBJECTS = $(am_dreg_OBJECTS) > dreg_LDADD = $(LDADD) > @ISCYGWIN_FALSE@dreg_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@dreg_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_edialign_OBJECTS = edialign.$(OBJEXT) > edialign_OBJECTS = $(am_edialign_OBJECTS) > edialign_LDADD = $(LDADD) > @ISCYGWIN_FALSE@edialign_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@edialign_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_einverted_OBJECTS = einverted.$(OBJEXT) > einverted_OBJECTS = $(am_einverted_OBJECTS) > einverted_LDADD = $(LDADD) > @ISCYGWIN_FALSE@einverted_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@einverted_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_embossdata_OBJECTS = embossdata.$(OBJEXT) > embossdata_OBJECTS = $(am_embossdata_OBJECTS) > embossdata_LDADD = $(LDADD) > @ISCYGWIN_FALSE@embossdata_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@embossdata_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_embossversion_OBJECTS = embossversion.$(OBJEXT) > embossversion_OBJECTS = $(am_embossversion_OBJECTS) > embossversion_LDADD = $(LDADD) > @ISCYGWIN_FALSE@embossversion_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@embossversion_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_emma_OBJECTS = emma.$(OBJEXT) > emma_OBJECTS = $(am_emma_OBJECTS) > emma_LDADD = $(LDADD) > @ISCYGWIN_FALSE@emma_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@emma_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_emowse_OBJECTS = emowse.$(OBJEXT) > emowse_OBJECTS = $(am_emowse_OBJECTS) > emowse_LDADD = $(LDADD) > @ISCYGWIN_FALSE@emowse_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@emowse_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_entrails_OBJECTS = entrails.$(OBJEXT) > entrails_OBJECTS = $(am_entrails_OBJECTS) > entrails_LDADD = $(LDADD) > @ISCYGWIN_FALSE@entrails_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@entrails_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_entret_OBJECTS = entret.$(OBJEXT) > entret_OBJECTS = $(am_entret_OBJECTS) > entret_LDADD = $(LDADD) > @ISCYGWIN_FALSE@entret_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@entret_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_epestfind_OBJECTS = epestfind.$(OBJEXT) > epestfind_OBJECTS = $(am_epestfind_OBJECTS) > epestfind_LDADD = $(LDADD) > @ISCYGWIN_FALSE@epestfind_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@epestfind_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_eprimer3_OBJECTS = eprimer3.$(OBJEXT) > eprimer3_OBJECTS = $(am_eprimer3_OBJECTS) > eprimer3_LDADD = $(LDADD) > @ISCYGWIN_FALSE@eprimer3_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@eprimer3_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_equicktandem_OBJECTS = equicktandem.$(OBJEXT) > equicktandem_OBJECTS = $(am_equicktandem_OBJECTS) > equicktandem_LDADD = $(LDADD) > @ISCYGWIN_FALSE@equicktandem_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@equicktandem_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_est2genome_OBJECTS = est2genome.$(OBJEXT) > est2genome_OBJECTS = $(am_est2genome_OBJECTS) > est2genome_LDADD = $(LDADD) > @ISCYGWIN_FALSE@est2genome_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@est2genome_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_etandem_OBJECTS = etandem.$(OBJEXT) > etandem_OBJECTS = $(am_etandem_OBJECTS) > etandem_LDADD = $(LDADD) > @ISCYGWIN_FALSE@etandem_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@etandem_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_extractalign_OBJECTS = extractalign.$(OBJEXT) > extractalign_OBJECTS = $(am_extractalign_OBJECTS) > extractalign_LDADD = $(LDADD) > @ISCYGWIN_FALSE@extractalign_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@extractalign_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_extractfeat_OBJECTS = extractfeat.$(OBJEXT) > extractfeat_OBJECTS = $(am_extractfeat_OBJECTS) > extractfeat_LDADD = $(LDADD) > @ISCYGWIN_FALSE@extractfeat_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@extractfeat_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_extractseq_OBJECTS = extractseq.$(OBJEXT) > extractseq_OBJECTS = $(am_extractseq_OBJECTS) > extractseq_LDADD = $(LDADD) > @ISCYGWIN_FALSE@extractseq_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@extractseq_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_featcopy_OBJECTS = featcopy.$(OBJEXT) > featcopy_OBJECTS = $(am_featcopy_OBJECTS) > featcopy_LDADD = $(LDADD) > @ISCYGWIN_FALSE@featcopy_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@featcopy_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_featreport_OBJECTS = featreport.$(OBJEXT) > featreport_OBJECTS = $(am_featreport_OBJECTS) > featreport_LDADD = $(LDADD) > @ISCYGWIN_FALSE@featreport_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@featreport_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_findkm_OBJECTS = findkm.$(OBJEXT) > findkm_OBJECTS = $(am_findkm_OBJECTS) > findkm_LDADD = $(LDADD) > @ISCYGWIN_FALSE@findkm_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@findkm_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_freak_OBJECTS = freak.$(OBJEXT) > freak_OBJECTS = $(am_freak_OBJECTS) > freak_LDADD = $(LDADD) > @ISCYGWIN_FALSE@freak_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@freak_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_fuzznuc_OBJECTS = fuzznuc.$(OBJEXT) > fuzznuc_OBJECTS = $(am_fuzznuc_OBJECTS) > fuzznuc_LDADD = $(LDADD) > @ISCYGWIN_FALSE@fuzznuc_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@fuzznuc_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_fuzzpro_OBJECTS = fuzzpro.$(OBJEXT) > fuzzpro_OBJECTS = $(am_fuzzpro_OBJECTS) > fuzzpro_LDADD = $(LDADD) > @ISCYGWIN_FALSE@fuzzpro_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@fuzzpro_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_fuzztran_OBJECTS = fuzztran.$(OBJEXT) > fuzztran_OBJECTS = $(am_fuzztran_OBJECTS) > fuzztran_LDADD = $(LDADD) > @ISCYGWIN_FALSE@fuzztran_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@fuzztran_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_garnier_OBJECTS = garnier.$(OBJEXT) > garnier_OBJECTS = $(am_garnier_OBJECTS) > garnier_LDADD = $(LDADD) > @ISCYGWIN_FALSE@garnier_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@garnier_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_geecee_OBJECTS = geecee.$(OBJEXT) > geecee_OBJECTS = $(am_geecee_OBJECTS) > geecee_LDADD = $(LDADD) > @ISCYGWIN_FALSE@geecee_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@geecee_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_getorf_OBJECTS = getorf.$(OBJEXT) > getorf_OBJECTS = $(am_getorf_OBJECTS) > getorf_LDADD = $(LDADD) > @ISCYGWIN_FALSE@getorf_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@getorf_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > giep_SOURCES = giep.c > giep_OBJECTS = giep.$(OBJEXT) > giep_LDADD = $(LDADD) > @ISCYGWIN_FALSE@giep_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@giep_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_helixturnhelix_OBJECTS = helixturnhelix.$(OBJEXT) > helixturnhelix_OBJECTS = $(am_helixturnhelix_OBJECTS) > helixturnhelix_LDADD = $(LDADD) > @ISCYGWIN_FALSE@helixturnhelix_DEPENDENCIES = \ > @ISCYGWIN_FALSE@ ../nucleus/libnucleus.la ../ajax/libajaxg.la \ >-@ISCYGWIN_FALSE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_FALSE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../ajax/libajax.la ../plplot/libeplplot.la > @ISCYGWIN_TRUE@helixturnhelix_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_histogramtest_OBJECTS = histogramtest.$(OBJEXT) > histogramtest_OBJECTS = $(am_histogramtest_OBJECTS) > histogramtest_LDADD = $(LDADD) > @ISCYGWIN_FALSE@histogramtest_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@histogramtest_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_hmoment_OBJECTS = hmoment.$(OBJEXT) > hmoment_OBJECTS = $(am_hmoment_OBJECTS) > hmoment_LDADD = $(LDADD) > @ISCYGWIN_FALSE@hmoment_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@hmoment_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_iep_OBJECTS = iep.$(OBJEXT) > iep_OBJECTS = $(am_iep_OBJECTS) > iep_LDADD = $(LDADD) > @ISCYGWIN_FALSE@iep_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@iep_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_infoalign_OBJECTS = infoalign.$(OBJEXT) > infoalign_OBJECTS = $(am_infoalign_OBJECTS) > infoalign_LDADD = $(LDADD) > @ISCYGWIN_FALSE@infoalign_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@infoalign_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_infobase_OBJECTS = infobase.$(OBJEXT) > infobase_OBJECTS = $(am_infobase_OBJECTS) > infobase_LDADD = $(LDADD) > @ISCYGWIN_FALSE@infobase_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@infobase_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_inforesidue_OBJECTS = inforesidue.$(OBJEXT) > inforesidue_OBJECTS = $(am_inforesidue_OBJECTS) > inforesidue_LDADD = $(LDADD) > @ISCYGWIN_FALSE@inforesidue_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@inforesidue_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_infoseq_OBJECTS = infoseq.$(OBJEXT) > infoseq_OBJECTS = $(am_infoseq_OBJECTS) > infoseq_LDADD = $(LDADD) > @ISCYGWIN_FALSE@infoseq_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@infoseq_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_intconv_OBJECTS = intconv.$(OBJEXT) > intconv_OBJECTS = $(am_intconv_OBJECTS) > intconv_LDADD = $(LDADD) > @ISCYGWIN_FALSE@intconv_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@intconv_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_isochore_OBJECTS = isochore.$(OBJEXT) > isochore_OBJECTS = $(am_isochore_OBJECTS) > isochore_LDADD = $(LDADD) > @ISCYGWIN_FALSE@isochore_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@isochore_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_jaspextract_OBJECTS = jaspextract.$(OBJEXT) > jaspextract_OBJECTS = $(am_jaspextract_OBJECTS) > jaspextract_LDADD = $(LDADD) > @ISCYGWIN_FALSE@jaspextract_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@jaspextract_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_jaspscan_OBJECTS = jaspscan.$(OBJEXT) > jaspscan_OBJECTS = $(am_jaspscan_OBJECTS) > jaspscan_LDADD = $(LDADD) > @ISCYGWIN_FALSE@jaspscan_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@jaspscan_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_jembossctl_OBJECTS = jembossctl.$(OBJEXT) > jembossctl_OBJECTS = $(am_jembossctl_OBJECTS) > jembossctl_LDADD = $(LDADD) > @ISCYGWIN_FALSE@jembossctl_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@jembossctl_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_lindna_OBJECTS = lindna.$(OBJEXT) > lindna_OBJECTS = $(am_lindna_OBJECTS) > lindna_LDADD = $(LDADD) > @ISCYGWIN_FALSE@lindna_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@lindna_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_listor_OBJECTS = listor.$(OBJEXT) > listor_OBJECTS = $(am_listor_OBJECTS) > listor_LDADD = $(LDADD) > @ISCYGWIN_FALSE@listor_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@listor_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > makenucseq_SOURCES = makenucseq.c > makenucseq_OBJECTS = makenucseq.$(OBJEXT) > makenucseq_LDADD = $(LDADD) > @ISCYGWIN_FALSE@makenucseq_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@makenucseq_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > makeprotseq_SOURCES = makeprotseq.c > makeprotseq_OBJECTS = makeprotseq.$(OBJEXT) > makeprotseq_LDADD = $(LDADD) > @ISCYGWIN_FALSE@makeprotseq_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@makeprotseq_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_marscan_OBJECTS = marscan.$(OBJEXT) > marscan_OBJECTS = $(am_marscan_OBJECTS) > marscan_LDADD = $(LDADD) > @ISCYGWIN_FALSE@marscan_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@marscan_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_maskambignuc_OBJECTS = maskambignuc.$(OBJEXT) > maskambignuc_OBJECTS = $(am_maskambignuc_OBJECTS) > maskambignuc_LDADD = $(LDADD) > @ISCYGWIN_FALSE@maskambignuc_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@maskambignuc_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_maskambigprot_OBJECTS = maskambigprot.$(OBJEXT) > maskambigprot_OBJECTS = $(am_maskambigprot_OBJECTS) > maskambigprot_LDADD = $(LDADD) > @ISCYGWIN_FALSE@maskambigprot_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@maskambigprot_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_maskfeat_OBJECTS = maskfeat.$(OBJEXT) > maskfeat_OBJECTS = $(am_maskfeat_OBJECTS) > maskfeat_LDADD = $(LDADD) > @ISCYGWIN_FALSE@maskfeat_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@maskfeat_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_maskseq_OBJECTS = maskseq.$(OBJEXT) > maskseq_OBJECTS = $(am_maskseq_OBJECTS) > maskseq_LDADD = $(LDADD) > @ISCYGWIN_FALSE@maskseq_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@maskseq_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_matcher_OBJECTS = matcher.$(OBJEXT) > matcher_OBJECTS = $(am_matcher_OBJECTS) > matcher_LDADD = $(LDADD) > @ISCYGWIN_FALSE@matcher_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@matcher_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_megamerger_OBJECTS = megamerger.$(OBJEXT) > megamerger_OBJECTS = $(am_megamerger_OBJECTS) > megamerger_LDADD = $(LDADD) > @ISCYGWIN_FALSE@megamerger_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@megamerger_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_merger_OBJECTS = merger.$(OBJEXT) > merger_OBJECTS = $(am_merger_OBJECTS) > merger_LDADD = $(LDADD) > @ISCYGWIN_FALSE@merger_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@merger_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_msbar_OBJECTS = msbar.$(OBJEXT) > msbar_OBJECTS = $(am_msbar_OBJECTS) > msbar_LDADD = $(LDADD) > @ISCYGWIN_FALSE@msbar_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@msbar_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_mwcontam_OBJECTS = mwcontam.$(OBJEXT) > mwcontam_OBJECTS = $(am_mwcontam_OBJECTS) > mwcontam_LDADD = $(LDADD) > @ISCYGWIN_FALSE@mwcontam_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@mwcontam_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_mwfilter_OBJECTS = mwfilter.$(OBJEXT) > mwfilter_OBJECTS = $(am_mwfilter_OBJECTS) > mwfilter_LDADD = $(LDADD) > @ISCYGWIN_FALSE@mwfilter_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@mwfilter_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_needle_OBJECTS = needle.$(OBJEXT) > needle_OBJECTS = $(am_needle_OBJECTS) > needle_LDADD = $(LDADD) > @ISCYGWIN_FALSE@needle_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@needle_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_newcoils_OBJECTS = newcoils.$(OBJEXT) > newcoils_OBJECTS = $(am_newcoils_OBJECTS) > newcoils_LDADD = $(LDADD) > @ISCYGWIN_FALSE@newcoils_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@newcoils_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_newcpgreport_OBJECTS = newcpgreport.$(OBJEXT) > newcpgreport_OBJECTS = $(am_newcpgreport_OBJECTS) > newcpgreport_LDADD = $(LDADD) > @ISCYGWIN_FALSE@newcpgreport_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@newcpgreport_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_newcpgseek_OBJECTS = newcpgseek.$(OBJEXT) > newcpgseek_OBJECTS = $(am_newcpgseek_OBJECTS) > newcpgseek_LDADD = $(LDADD) > @ISCYGWIN_FALSE@newcpgseek_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@newcpgseek_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_newseq_OBJECTS = newseq.$(OBJEXT) > newseq_OBJECTS = $(am_newseq_OBJECTS) > newseq_LDADD = $(LDADD) > @ISCYGWIN_FALSE@newseq_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@newseq_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_nohtml_OBJECTS = nohtml.$(OBJEXT) > nohtml_OBJECTS = $(am_nohtml_OBJECTS) > nohtml_LDADD = $(LDADD) > @ISCYGWIN_FALSE@nohtml_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@nohtml_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_noreturn_OBJECTS = noreturn.$(OBJEXT) > noreturn_OBJECTS = $(am_noreturn_OBJECTS) > noreturn_LDADD = $(LDADD) > @ISCYGWIN_FALSE@noreturn_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@noreturn_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_nospace_OBJECTS = nospace.$(OBJEXT) > nospace_OBJECTS = $(am_nospace_OBJECTS) > nospace_LDADD = $(LDADD) > @ISCYGWIN_FALSE@nospace_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@nospace_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_notab_OBJECTS = notab.$(OBJEXT) > notab_OBJECTS = $(am_notab_OBJECTS) > notab_LDADD = $(LDADD) > @ISCYGWIN_FALSE@notab_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@notab_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_notseq_OBJECTS = notseq.$(OBJEXT) > notseq_OBJECTS = $(am_notseq_OBJECTS) > notseq_LDADD = $(LDADD) > @ISCYGWIN_FALSE@notseq_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@notseq_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_nthseq_OBJECTS = nthseq.$(OBJEXT) > nthseq_OBJECTS = $(am_nthseq_OBJECTS) > nthseq_LDADD = $(LDADD) > @ISCYGWIN_FALSE@nthseq_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@nthseq_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_nthseqset_OBJECTS = nthseqset.$(OBJEXT) > nthseqset_OBJECTS = $(am_nthseqset_OBJECTS) > nthseqset_LDADD = $(LDADD) > @ISCYGWIN_FALSE@nthseqset_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@nthseqset_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_octanol_OBJECTS = octanol.$(OBJEXT) > octanol_OBJECTS = $(am_octanol_OBJECTS) > octanol_LDADD = $(LDADD) > @ISCYGWIN_FALSE@octanol_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@octanol_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_oddcomp_OBJECTS = oddcomp.$(OBJEXT) > oddcomp_OBJECTS = $(am_oddcomp_OBJECTS) > oddcomp_LDADD = $(LDADD) > @ISCYGWIN_FALSE@oddcomp_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@oddcomp_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_origsplitter_OBJECTS = origsplitter.$(OBJEXT) > origsplitter_OBJECTS = $(am_origsplitter_OBJECTS) > origsplitter_LDADD = $(LDADD) > @ISCYGWIN_FALSE@origsplitter_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@origsplitter_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_origunion_OBJECTS = origunion.$(OBJEXT) > origunion_OBJECTS = $(am_origunion_OBJECTS) > origunion_LDADD = $(LDADD) > @ISCYGWIN_FALSE@origunion_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@origunion_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_palindrome_OBJECTS = palindrome.$(OBJEXT) > palindrome_OBJECTS = $(am_palindrome_OBJECTS) > palindrome_LDADD = $(LDADD) > @ISCYGWIN_FALSE@palindrome_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@palindrome_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_pasteseq_OBJECTS = pasteseq.$(OBJEXT) > pasteseq_OBJECTS = $(am_pasteseq_OBJECTS) > pasteseq_LDADD = $(LDADD) > @ISCYGWIN_FALSE@pasteseq_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@pasteseq_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_patmatdb_OBJECTS = patmatdb.$(OBJEXT) > patmatdb_OBJECTS = $(am_patmatdb_OBJECTS) > patmatdb_LDADD = $(LDADD) > @ISCYGWIN_FALSE@patmatdb_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@patmatdb_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_patmatmotifs_OBJECTS = patmatmotifs.$(OBJEXT) > patmatmotifs_OBJECTS = $(am_patmatmotifs_OBJECTS) > patmatmotifs_LDADD = $(LDADD) > @ISCYGWIN_FALSE@patmatmotifs_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@patmatmotifs_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_patmattest_OBJECTS = patmattest.$(OBJEXT) > patmattest_OBJECTS = $(am_patmattest_OBJECTS) > patmattest_LDADD = $(LDADD) > @ISCYGWIN_FALSE@patmattest_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@patmattest_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_pepcoil_OBJECTS = pepcoil.$(OBJEXT) > pepcoil_OBJECTS = $(am_pepcoil_OBJECTS) > pepcoil_LDADD = $(LDADD) > @ISCYGWIN_FALSE@pepcoil_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@pepcoil_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_pepinfo_OBJECTS = pepinfo.$(OBJEXT) > pepinfo_OBJECTS = $(am_pepinfo_OBJECTS) > pepinfo_LDADD = $(LDADD) > @ISCYGWIN_FALSE@pepinfo_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@pepinfo_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_pepnet_OBJECTS = pepnet.$(OBJEXT) > pepnet_OBJECTS = $(am_pepnet_OBJECTS) > pepnet_LDADD = $(LDADD) > @ISCYGWIN_FALSE@pepnet_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@pepnet_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_pepstats_OBJECTS = pepstats.$(OBJEXT) > pepstats_OBJECTS = $(am_pepstats_OBJECTS) > pepstats_LDADD = $(LDADD) > @ISCYGWIN_FALSE@pepstats_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@pepstats_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_pepwheel_OBJECTS = pepwheel.$(OBJEXT) > pepwheel_OBJECTS = $(am_pepwheel_OBJECTS) > pepwheel_LDADD = $(LDADD) > @ISCYGWIN_FALSE@pepwheel_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@pepwheel_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_pepwindow_OBJECTS = pepwindow.$(OBJEXT) > pepwindow_OBJECTS = $(am_pepwindow_OBJECTS) > pepwindow_LDADD = $(LDADD) > @ISCYGWIN_FALSE@pepwindow_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@pepwindow_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_pepwindowall_OBJECTS = pepwindowall.$(OBJEXT) > pepwindowall_OBJECTS = $(am_pepwindowall_OBJECTS) > pepwindowall_LDADD = $(LDADD) > @ISCYGWIN_FALSE@pepwindowall_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@pepwindowall_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_plotcon_OBJECTS = plotcon.$(OBJEXT) > plotcon_OBJECTS = $(am_plotcon_OBJECTS) > plotcon_LDADD = $(LDADD) > @ISCYGWIN_FALSE@plotcon_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@plotcon_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_plotorf_OBJECTS = plotorf.$(OBJEXT) > plotorf_OBJECTS = $(am_plotorf_OBJECTS) > plotorf_LDADD = $(LDADD) > @ISCYGWIN_FALSE@plotorf_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@plotorf_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_polydot_OBJECTS = polydot.$(OBJEXT) > polydot_OBJECTS = $(am_polydot_OBJECTS) > polydot_LDADD = $(LDADD) > @ISCYGWIN_FALSE@polydot_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@polydot_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_preg_OBJECTS = preg.$(OBJEXT) > preg_OBJECTS = $(am_preg_OBJECTS) > preg_LDADD = $(LDADD) > @ISCYGWIN_FALSE@preg_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@preg_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_prettyplot_OBJECTS = prettyplot.$(OBJEXT) > prettyplot_OBJECTS = $(am_prettyplot_OBJECTS) > prettyplot_LDADD = $(LDADD) > @ISCYGWIN_FALSE@prettyplot_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@prettyplot_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_prettyseq_OBJECTS = prettyseq.$(OBJEXT) > prettyseq_OBJECTS = $(am_prettyseq_OBJECTS) > prettyseq_LDADD = $(LDADD) > @ISCYGWIN_FALSE@prettyseq_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@prettyseq_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_prima_OBJECTS = prima.$(OBJEXT) > prima_OBJECTS = $(am_prima_OBJECTS) > prima_LDADD = $(LDADD) > @ISCYGWIN_FALSE@prima_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@prima_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_primers_OBJECTS = primers.$(OBJEXT) > primers_OBJECTS = $(am_primers_OBJECTS) > primers_LDADD = $(LDADD) > @ISCYGWIN_FALSE@primers_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@primers_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_primersearch_OBJECTS = primersearch.$(OBJEXT) > primersearch_OBJECTS = $(am_primersearch_OBJECTS) > primersearch_LDADD = $(LDADD) > @ISCYGWIN_FALSE@primersearch_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@primersearch_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_printsextract_OBJECTS = printsextract.$(OBJEXT) > printsextract_OBJECTS = $(am_printsextract_OBJECTS) > printsextract_LDADD = $(LDADD) > @ISCYGWIN_FALSE@printsextract_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@printsextract_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_profit_OBJECTS = profit.$(OBJEXT) > profit_OBJECTS = $(am_profit_OBJECTS) > profit_LDADD = $(LDADD) > @ISCYGWIN_FALSE@profit_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@profit_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_prophecy_OBJECTS = prophecy.$(OBJEXT) > prophecy_OBJECTS = $(am_prophecy_OBJECTS) > prophecy_LDADD = $(LDADD) > @ISCYGWIN_FALSE@prophecy_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@prophecy_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_prophet_OBJECTS = prophet.$(OBJEXT) > prophet_OBJECTS = $(am_prophet_OBJECTS) > prophet_LDADD = $(LDADD) > @ISCYGWIN_FALSE@prophet_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@prophet_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_prosextract_OBJECTS = prosextract.$(OBJEXT) > prosextract_OBJECTS = $(am_prosextract_OBJECTS) > prosextract_LDADD = $(LDADD) > @ISCYGWIN_FALSE@prosextract_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@prosextract_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_pscan_OBJECTS = pscan.$(OBJEXT) > pscan_OBJECTS = $(am_pscan_OBJECTS) > pscan_LDADD = $(LDADD) > @ISCYGWIN_FALSE@pscan_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@pscan_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_psiphi_OBJECTS = psiphi.$(OBJEXT) > psiphi_OBJECTS = $(am_psiphi_OBJECTS) > psiphi_LDADD = $(LDADD) > @ISCYGWIN_FALSE@psiphi_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@psiphi_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_rebaseextract_OBJECTS = rebaseextract.$(OBJEXT) > rebaseextract_OBJECTS = $(am_rebaseextract_OBJECTS) > rebaseextract_LDADD = $(LDADD) > @ISCYGWIN_FALSE@rebaseextract_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@rebaseextract_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_recoder_OBJECTS = recoder.$(OBJEXT) > recoder_OBJECTS = $(am_recoder_OBJECTS) > recoder_LDADD = $(LDADD) > @ISCYGWIN_FALSE@recoder_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@recoder_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_redata_OBJECTS = redata.$(OBJEXT) > redata_OBJECTS = $(am_redata_OBJECTS) > redata_LDADD = $(LDADD) > @ISCYGWIN_FALSE@redata_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@redata_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_remap_OBJECTS = remap.$(OBJEXT) > remap_OBJECTS = $(am_remap_OBJECTS) > remap_LDADD = $(LDADD) > @ISCYGWIN_FALSE@remap_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@remap_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_restover_OBJECTS = restover.$(OBJEXT) > restover_OBJECTS = $(am_restover_OBJECTS) > restover_LDADD = $(LDADD) > @ISCYGWIN_FALSE@restover_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@restover_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_restrict_OBJECTS = restrict.$(OBJEXT) > restrict_OBJECTS = $(am_restrict_OBJECTS) > restrict_LDADD = $(LDADD) > @ISCYGWIN_FALSE@restrict_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@restrict_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_revseq_OBJECTS = revseq.$(OBJEXT) > revseq_OBJECTS = $(am_revseq_OBJECTS) > revseq_LDADD = $(LDADD) > @ISCYGWIN_FALSE@revseq_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@revseq_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_seealso_OBJECTS = seealso.$(OBJEXT) > seealso_OBJECTS = $(am_seealso_OBJECTS) > seealso_LDADD = $(LDADD) > @ISCYGWIN_FALSE@seealso_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@seealso_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_seqinfo_OBJECTS = seqinfo.$(OBJEXT) > seqinfo_OBJECTS = $(am_seqinfo_OBJECTS) > seqinfo_LDADD = $(LDADD) > @ISCYGWIN_FALSE@seqinfo_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@seqinfo_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_seqmatchall_OBJECTS = seqmatchall.$(OBJEXT) > seqmatchall_OBJECTS = $(am_seqmatchall_OBJECTS) > seqmatchall_LDADD = $(LDADD) > @ISCYGWIN_FALSE@seqmatchall_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@seqmatchall_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_seqret_OBJECTS = seqret.$(OBJEXT) > seqret_OBJECTS = $(am_seqret_OBJECTS) > seqret_LDADD = $(LDADD) > @ISCYGWIN_FALSE@seqret_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@seqret_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_seqretall_OBJECTS = seqretall.$(OBJEXT) > seqretall_OBJECTS = $(am_seqretall_OBJECTS) > seqretall_LDADD = $(LDADD) > @ISCYGWIN_FALSE@seqretall_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@seqretall_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_seqretallfeat_OBJECTS = seqretallfeat.$(OBJEXT) > seqretallfeat_OBJECTS = $(am_seqretallfeat_OBJECTS) > seqretallfeat_LDADD = $(LDADD) > @ISCYGWIN_FALSE@seqretallfeat_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@seqretallfeat_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_seqretset_OBJECTS = seqretset.$(OBJEXT) > seqretset_OBJECTS = $(am_seqretset_OBJECTS) > seqretset_LDADD = $(LDADD) > @ISCYGWIN_FALSE@seqretset_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@seqretset_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_seqretsetall_OBJECTS = seqretsetall.$(OBJEXT) > seqretsetall_OBJECTS = $(am_seqretsetall_OBJECTS) > seqretsetall_LDADD = $(LDADD) > @ISCYGWIN_FALSE@seqretsetall_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@seqretsetall_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_seqretsingle_OBJECTS = seqretsingle.$(OBJEXT) > seqretsingle_OBJECTS = $(am_seqretsingle_OBJECTS) > seqretsingle_LDADD = $(LDADD) > @ISCYGWIN_FALSE@seqretsingle_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@seqretsingle_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_seqretsplit_OBJECTS = seqretsplit.$(OBJEXT) > seqretsplit_OBJECTS = $(am_seqretsplit_OBJECTS) > seqretsplit_LDADD = $(LDADD) > @ISCYGWIN_FALSE@seqretsplit_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@seqretsplit_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_seqrettype_OBJECTS = seqrettype.$(OBJEXT) > seqrettype_OBJECTS = $(am_seqrettype_OBJECTS) > seqrettype_LDADD = $(LDADD) > @ISCYGWIN_FALSE@seqrettype_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@seqrettype_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_showalign_OBJECTS = showalign.$(OBJEXT) > showalign_OBJECTS = $(am_showalign_OBJECTS) > showalign_LDADD = $(LDADD) > @ISCYGWIN_FALSE@showalign_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@showalign_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_showdb_OBJECTS = showdb.$(OBJEXT) > showdb_OBJECTS = $(am_showdb_OBJECTS) > showdb_LDADD = $(LDADD) > @ISCYGWIN_FALSE@showdb_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@showdb_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_showfeat_OBJECTS = showfeat.$(OBJEXT) > showfeat_OBJECTS = $(am_showfeat_OBJECTS) > showfeat_LDADD = $(LDADD) > @ISCYGWIN_FALSE@showfeat_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@showfeat_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_showorf_OBJECTS = showorf.$(OBJEXT) > showorf_OBJECTS = $(am_showorf_OBJECTS) > showorf_LDADD = $(LDADD) > @ISCYGWIN_FALSE@showorf_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@showorf_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_showpep_OBJECTS = showpep.$(OBJEXT) > showpep_OBJECTS = $(am_showpep_OBJECTS) > showpep_LDADD = $(LDADD) > @ISCYGWIN_FALSE@showpep_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@showpep_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_showseq_OBJECTS = showseq.$(OBJEXT) > showseq_OBJECTS = $(am_showseq_OBJECTS) > showseq_LDADD = $(LDADD) > @ISCYGWIN_FALSE@showseq_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@showseq_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_shuffleseq_OBJECTS = shuffleseq.$(OBJEXT) > shuffleseq_OBJECTS = $(am_shuffleseq_OBJECTS) > shuffleseq_LDADD = $(LDADD) > @ISCYGWIN_FALSE@shuffleseq_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@shuffleseq_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_sigcleave_OBJECTS = sigcleave.$(OBJEXT) > sigcleave_OBJECTS = $(am_sigcleave_OBJECTS) > sigcleave_LDADD = $(LDADD) > @ISCYGWIN_FALSE@sigcleave_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@sigcleave_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_silent_OBJECTS = silent.$(OBJEXT) > silent_OBJECTS = $(am_silent_OBJECTS) > silent_LDADD = $(LDADD) > @ISCYGWIN_FALSE@silent_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@silent_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_sirna_OBJECTS = sirna.$(OBJEXT) > sirna_OBJECTS = $(am_sirna_OBJECTS) > sirna_LDADD = $(LDADD) > @ISCYGWIN_FALSE@sirna_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@sirna_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_sixpack_OBJECTS = sixpack.$(OBJEXT) > sixpack_OBJECTS = $(am_sixpack_OBJECTS) > sixpack_LDADD = $(LDADD) > @ISCYGWIN_FALSE@sixpack_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@sixpack_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_sizeseq_OBJECTS = sizeseq.$(OBJEXT) > sizeseq_OBJECTS = $(am_sizeseq_OBJECTS) > sizeseq_LDADD = $(LDADD) > @ISCYGWIN_FALSE@sizeseq_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@sizeseq_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_skipredundant_OBJECTS = skipredundant.$(OBJEXT) > skipredundant_OBJECTS = $(am_skipredundant_OBJECTS) > skipredundant_LDADD = $(LDADD) > @ISCYGWIN_FALSE@skipredundant_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@skipredundant_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_skipseq_OBJECTS = skipseq.$(OBJEXT) > skipseq_OBJECTS = $(am_skipseq_OBJECTS) > skipseq_LDADD = $(LDADD) > @ISCYGWIN_FALSE@skipseq_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@skipseq_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > splitsource_SOURCES = splitsource.c > splitsource_OBJECTS = splitsource.$(OBJEXT) > splitsource_LDADD = $(LDADD) > @ISCYGWIN_FALSE@splitsource_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@splitsource_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_splitter_OBJECTS = splitter.$(OBJEXT) > splitter_OBJECTS = $(am_splitter_OBJECTS) > splitter_LDADD = $(LDADD) > @ISCYGWIN_FALSE@splitter_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@splitter_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_stretcher_OBJECTS = stretcher.$(OBJEXT) > stretcher_OBJECTS = $(am_stretcher_OBJECTS) > stretcher_LDADD = $(LDADD) > @ISCYGWIN_FALSE@stretcher_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@stretcher_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_stssearch_OBJECTS = stssearch.$(OBJEXT) > stssearch_OBJECTS = $(am_stssearch_OBJECTS) > stssearch_LDADD = $(LDADD) > @ISCYGWIN_FALSE@stssearch_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@stssearch_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_supermatcher_OBJECTS = supermatcher.$(OBJEXT) > supermatcher_OBJECTS = $(am_supermatcher_OBJECTS) > supermatcher_LDADD = $(LDADD) > @ISCYGWIN_FALSE@supermatcher_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@supermatcher_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_syco_OBJECTS = syco.$(OBJEXT) > syco_OBJECTS = $(am_syco_OBJECTS) > syco_LDADD = $(LDADD) > @ISCYGWIN_FALSE@syco_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@syco_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_tcode_OBJECTS = tcode.$(OBJEXT) > tcode_OBJECTS = $(am_tcode_OBJECTS) > tcode_LDADD = $(LDADD) > @ISCYGWIN_FALSE@tcode_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@tcode_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_testplot_OBJECTS = testplot.$(OBJEXT) > testplot_OBJECTS = $(am_testplot_OBJECTS) > testplot_LDADD = $(LDADD) > @ISCYGWIN_FALSE@testplot_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@testplot_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_textsearch_OBJECTS = textsearch.$(OBJEXT) > textsearch_OBJECTS = $(am_textsearch_OBJECTS) > textsearch_LDADD = $(LDADD) > @ISCYGWIN_FALSE@textsearch_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@textsearch_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_tfextract_OBJECTS = tfextract.$(OBJEXT) > tfextract_OBJECTS = $(am_tfextract_OBJECTS) > tfextract_LDADD = $(LDADD) > @ISCYGWIN_FALSE@tfextract_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@tfextract_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_tfm_OBJECTS = tfm.$(OBJEXT) > tfm_OBJECTS = $(am_tfm_OBJECTS) > tfm_LDADD = $(LDADD) > @ISCYGWIN_FALSE@tfm_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@tfm_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_tfscan_OBJECTS = tfscan.$(OBJEXT) > tfscan_OBJECTS = $(am_tfscan_OBJECTS) > tfscan_LDADD = $(LDADD) > @ISCYGWIN_FALSE@tfscan_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@tfscan_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_tmap_OBJECTS = tmap.$(OBJEXT) > tmap_OBJECTS = $(am_tmap_OBJECTS) > tmap_LDADD = $(LDADD) > @ISCYGWIN_FALSE@tmap_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@tmap_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_tranalign_OBJECTS = tranalign.$(OBJEXT) > tranalign_OBJECTS = $(am_tranalign_OBJECTS) > tranalign_LDADD = $(LDADD) > @ISCYGWIN_FALSE@tranalign_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@tranalign_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_transeq_OBJECTS = transeq.$(OBJEXT) > transeq_OBJECTS = $(am_transeq_OBJECTS) > transeq_LDADD = $(LDADD) > @ISCYGWIN_FALSE@transeq_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@transeq_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_treetypedisplay_OBJECTS = treetypedisplay.$(OBJEXT) > treetypedisplay_OBJECTS = $(am_treetypedisplay_OBJECTS) > treetypedisplay_LDADD = $(LDADD) > @ISCYGWIN_FALSE@treetypedisplay_DEPENDENCIES = \ > @ISCYGWIN_FALSE@ ../nucleus/libnucleus.la ../ajax/libajaxg.la \ >-@ISCYGWIN_FALSE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_FALSE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../ajax/libajax.la ../plplot/libeplplot.la > @ISCYGWIN_TRUE@treetypedisplay_DEPENDENCIES = \ > @ISCYGWIN_TRUE@ ../nucleus/libnucleus.la ../ajax/libajax.la \ >-@ISCYGWIN_TRUE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../plplot/libeplplot.la > am_trimest_OBJECTS = trimest.$(OBJEXT) > trimest_OBJECTS = $(am_trimest_OBJECTS) > trimest_LDADD = $(LDADD) > @ISCYGWIN_FALSE@trimest_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@trimest_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_trimseq_OBJECTS = trimseq.$(OBJEXT) > trimseq_OBJECTS = $(am_trimseq_OBJECTS) > trimseq_LDADD = $(LDADD) > @ISCYGWIN_FALSE@trimseq_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@trimseq_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_trimspace_OBJECTS = trimspace.$(OBJEXT) > trimspace_OBJECTS = $(am_trimspace_OBJECTS) > trimspace_LDADD = $(LDADD) > @ISCYGWIN_FALSE@trimspace_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@trimspace_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la >+am_tryptic_digest_OBJECTS = tryptic_digest.$(OBJEXT) >+tryptic_digest_OBJECTS = $(am_tryptic_digest_OBJECTS) >+tryptic_digest_LDADD = $(LDADD) >+@ISCYGWIN_FALSE@tryptic_digest_DEPENDENCIES = \ >+@ISCYGWIN_FALSE@ ../nucleus/libnucleus.la ../ajax/libajaxg.la \ >+@ISCYGWIN_FALSE@ ../ajax/libajax.la ../plplot/libeplplot.la >+@ISCYGWIN_TRUE@tryptic_digest_DEPENDENCIES = ../nucleus/libnucleus.la \ >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_twofeat_OBJECTS = twofeat.$(OBJEXT) > twofeat_OBJECTS = $(am_twofeat_OBJECTS) > twofeat_LDADD = $(LDADD) > @ISCYGWIN_FALSE@twofeat_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@twofeat_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_union_OBJECTS = union.$(OBJEXT) > union_OBJECTS = $(am_union_OBJECTS) > union_LDADD = $(LDADD) > @ISCYGWIN_FALSE@union_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@union_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_vectorstrip_OBJECTS = vectorstrip.$(OBJEXT) > vectorstrip_OBJECTS = $(am_vectorstrip_OBJECTS) > vectorstrip_LDADD = $(LDADD) > @ISCYGWIN_FALSE@vectorstrip_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@vectorstrip_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_water_OBJECTS = water.$(OBJEXT) > water_OBJECTS = $(am_water_OBJECTS) > water_LDADD = $(LDADD) > @ISCYGWIN_FALSE@water_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@water_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_whichdb_OBJECTS = whichdb.$(OBJEXT) > whichdb_OBJECTS = $(am_whichdb_OBJECTS) > whichdb_LDADD = $(LDADD) > @ISCYGWIN_FALSE@whichdb_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@whichdb_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_wobble_OBJECTS = wobble.$(OBJEXT) > wobble_OBJECTS = $(am_wobble_OBJECTS) > wobble_LDADD = $(LDADD) > @ISCYGWIN_FALSE@wobble_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@wobble_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_wordcount_OBJECTS = wordcount.$(OBJEXT) > wordcount_OBJECTS = $(am_wordcount_OBJECTS) > wordcount_LDADD = $(LDADD) > @ISCYGWIN_FALSE@wordcount_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@wordcount_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_wordfinder_OBJECTS = wordfinder.$(OBJEXT) > wordfinder_OBJECTS = $(am_wordfinder_OBJECTS) > wordfinder_LDADD = $(LDADD) > @ISCYGWIN_FALSE@wordfinder_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@wordfinder_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_wordmatch_OBJECTS = wordmatch.$(OBJEXT) > wordmatch_OBJECTS = $(am_wordmatch_OBJECTS) > wordmatch_LDADD = $(LDADD) > @ISCYGWIN_FALSE@wordmatch_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@wordmatch_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_wossname_OBJECTS = wossname.$(OBJEXT) > wossname_OBJECTS = $(am_wossname_OBJECTS) > wossname_LDADD = $(LDADD) > @ISCYGWIN_FALSE@wossname_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@wossname_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > am_yank_OBJECTS = yank.$(OBJEXT) > yank_OBJECTS = $(am_yank_OBJECTS) > yank_LDADD = $(LDADD) > @ISCYGWIN_FALSE@yank_DEPENDENCIES = ../nucleus/libnucleus.la \ > @ISCYGWIN_FALSE@ ../ajax/libajaxg.la ../ajax/libajax.la \ >-@ISCYGWIN_FALSE@ ../plplot/libeplplot.la $(am__DEPENDENCIES_1) >+@ISCYGWIN_FALSE@ ../plplot/libeplplot.la > @ISCYGWIN_TRUE@yank_DEPENDENCIES = ../nucleus/libnucleus.la \ >-@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la \ >-@ISCYGWIN_TRUE@ $(am__DEPENDENCIES_1) >+@ISCYGWIN_TRUE@ ../ajax/libajax.la ../plplot/libeplplot.la > DEFAULT_INCLUDES = -I.@am__isrc@ > depcomp = $(SHELL) $(top_srcdir)/depcomp > am__depfiles_maybe = depfiles >@@ -2099,34 +1876,34 @@ > $(dbifasta_SOURCES) $(dbiflat_SOURCES) $(dbigcg_SOURCES) \ > $(dbxfasta_SOURCES) $(dbxflat_SOURCES) $(dbxgcg_SOURCES) \ > $(degapseq_SOURCES) $(density_SOURCES) $(descseq_SOURCES) \ >- $(diffseq_SOURCES) $(digest_SOURCES) $(distmat_SOURCES) \ >- $(dotmatcher_SOURCES) $(dotpath_SOURCES) $(dottup_SOURCES) \ >- $(dreg_SOURCES) $(edialign_SOURCES) $(einverted_SOURCES) \ >- $(embossdata_SOURCES) $(embossversion_SOURCES) $(emma_SOURCES) \ >- $(emowse_SOURCES) $(entrails_SOURCES) $(entret_SOURCES) \ >- $(epestfind_SOURCES) $(eprimer3_SOURCES) \ >- $(equicktandem_SOURCES) $(est2genome_SOURCES) \ >- $(etandem_SOURCES) $(extractalign_SOURCES) \ >- $(extractfeat_SOURCES) $(extractseq_SOURCES) \ >- $(featcopy_SOURCES) $(featreport_SOURCES) $(findkm_SOURCES) \ >- $(freak_SOURCES) $(fuzznuc_SOURCES) $(fuzzpro_SOURCES) \ >- $(fuzztran_SOURCES) $(garnier_SOURCES) $(geecee_SOURCES) \ >- $(getorf_SOURCES) giep.c $(helixturnhelix_SOURCES) \ >- $(histogramtest_SOURCES) $(hmoment_SOURCES) $(iep_SOURCES) \ >- $(infoalign_SOURCES) $(infobase_SOURCES) \ >- $(inforesidue_SOURCES) $(infoseq_SOURCES) $(intconv_SOURCES) \ >- $(isochore_SOURCES) $(jaspextract_SOURCES) $(jaspscan_SOURCES) \ >- $(jembossctl_SOURCES) $(lindna_SOURCES) $(listor_SOURCES) \ >- makenucseq.c makeprotseq.c $(marscan_SOURCES) \ >- $(maskambignuc_SOURCES) $(maskambigprot_SOURCES) \ >- $(maskfeat_SOURCES) $(maskseq_SOURCES) $(matcher_SOURCES) \ >- $(megamerger_SOURCES) $(merger_SOURCES) $(msbar_SOURCES) \ >- $(mwcontam_SOURCES) $(mwfilter_SOURCES) $(needle_SOURCES) \ >- $(newcoils_SOURCES) $(newcpgreport_SOURCES) \ >- $(newcpgseek_SOURCES) $(newseq_SOURCES) $(nohtml_SOURCES) \ >- $(noreturn_SOURCES) $(nospace_SOURCES) $(notab_SOURCES) \ >- $(notseq_SOURCES) $(nthseq_SOURCES) $(nthseqset_SOURCES) \ >- $(octanol_SOURCES) $(oddcomp_SOURCES) $(origsplitter_SOURCES) \ >+ $(diffseq_SOURCES) $(distmat_SOURCES) $(dotmatcher_SOURCES) \ >+ $(dotpath_SOURCES) $(dottup_SOURCES) $(dreg_SOURCES) \ >+ $(edialign_SOURCES) $(einverted_SOURCES) $(embossdata_SOURCES) \ >+ $(embossversion_SOURCES) $(emma_SOURCES) $(emowse_SOURCES) \ >+ $(entrails_SOURCES) $(entret_SOURCES) $(epestfind_SOURCES) \ >+ $(eprimer3_SOURCES) $(equicktandem_SOURCES) \ >+ $(est2genome_SOURCES) $(etandem_SOURCES) \ >+ $(extractalign_SOURCES) $(extractfeat_SOURCES) \ >+ $(extractseq_SOURCES) $(featcopy_SOURCES) \ >+ $(featreport_SOURCES) $(findkm_SOURCES) $(freak_SOURCES) \ >+ $(fuzznuc_SOURCES) $(fuzzpro_SOURCES) $(fuzztran_SOURCES) \ >+ $(garnier_SOURCES) $(geecee_SOURCES) $(getorf_SOURCES) giep.c \ >+ $(helixturnhelix_SOURCES) $(histogramtest_SOURCES) \ >+ $(hmoment_SOURCES) $(iep_SOURCES) $(infoalign_SOURCES) \ >+ $(infobase_SOURCES) $(inforesidue_SOURCES) $(infoseq_SOURCES) \ >+ $(intconv_SOURCES) $(isochore_SOURCES) $(jaspextract_SOURCES) \ >+ $(jaspscan_SOURCES) $(jembossctl_SOURCES) $(lindna_SOURCES) \ >+ $(listor_SOURCES) makenucseq.c makeprotseq.c \ >+ $(marscan_SOURCES) $(maskambignuc_SOURCES) \ >+ $(maskambigprot_SOURCES) $(maskfeat_SOURCES) \ >+ $(maskseq_SOURCES) $(matcher_SOURCES) $(megamerger_SOURCES) \ >+ $(merger_SOURCES) $(msbar_SOURCES) $(mwcontam_SOURCES) \ >+ $(mwfilter_SOURCES) $(needle_SOURCES) $(newcoils_SOURCES) \ >+ $(newcpgreport_SOURCES) $(newcpgseek_SOURCES) \ >+ $(newseq_SOURCES) $(nohtml_SOURCES) $(noreturn_SOURCES) \ >+ $(nospace_SOURCES) $(notab_SOURCES) $(notseq_SOURCES) \ >+ $(nthseq_SOURCES) $(nthseqset_SOURCES) $(octanol_SOURCES) \ >+ $(oddcomp_SOURCES) $(origsplitter_SOURCES) \ > $(origunion_SOURCES) $(palindrome_SOURCES) $(pasteseq_SOURCES) \ > $(patmatdb_SOURCES) $(patmatmotifs_SOURCES) \ > $(patmattest_SOURCES) $(pepcoil_SOURCES) $(pepinfo_SOURCES) \ >@@ -2155,11 +1932,11 @@ > $(tfextract_SOURCES) $(tfm_SOURCES) $(tfscan_SOURCES) \ > $(tmap_SOURCES) $(tranalign_SOURCES) $(transeq_SOURCES) \ > $(treetypedisplay_SOURCES) $(trimest_SOURCES) \ >- $(trimseq_SOURCES) $(trimspace_SOURCES) $(twofeat_SOURCES) \ >- $(union_SOURCES) $(vectorstrip_SOURCES) $(water_SOURCES) \ >- $(whichdb_SOURCES) $(wobble_SOURCES) $(wordcount_SOURCES) \ >- $(wordfinder_SOURCES) $(wordmatch_SOURCES) $(wossname_SOURCES) \ >- $(yank_SOURCES) >+ $(trimseq_SOURCES) $(trimspace_SOURCES) \ >+ $(tryptic_digest_SOURCES) $(twofeat_SOURCES) $(union_SOURCES) \ >+ $(vectorstrip_SOURCES) $(water_SOURCES) $(whichdb_SOURCES) \ >+ $(wobble_SOURCES) $(wordcount_SOURCES) $(wordfinder_SOURCES) \ >+ $(wordmatch_SOURCES) $(wossname_SOURCES) $(yank_SOURCES) > DIST_SOURCES = $(aaindexextract_SOURCES) $(abiview_SOURCES) \ > $(acdc_SOURCES) $(acdlog_SOURCES) $(acdpretty_SOURCES) \ > $(acdtable_SOURCES) $(acdtrace_SOURCES) $(acdvalid_SOURCES) \ >@@ -2177,34 +1954,34 @@ > $(dbifasta_SOURCES) $(dbiflat_SOURCES) $(dbigcg_SOURCES) \ > $(dbxfasta_SOURCES) $(dbxflat_SOURCES) $(dbxgcg_SOURCES) \ > $(degapseq_SOURCES) $(density_SOURCES) $(descseq_SOURCES) \ >- $(diffseq_SOURCES) $(digest_SOURCES) $(distmat_SOURCES) \ >- $(dotmatcher_SOURCES) $(dotpath_SOURCES) $(dottup_SOURCES) \ >- $(dreg_SOURCES) $(edialign_SOURCES) $(einverted_SOURCES) \ >- $(embossdata_SOURCES) $(embossversion_SOURCES) $(emma_SOURCES) \ >- $(emowse_SOURCES) $(entrails_SOURCES) $(entret_SOURCES) \ >- $(epestfind_SOURCES) $(eprimer3_SOURCES) \ >- $(equicktandem_SOURCES) $(est2genome_SOURCES) \ >- $(etandem_SOURCES) $(extractalign_SOURCES) \ >- $(extractfeat_SOURCES) $(extractseq_SOURCES) \ >- $(featcopy_SOURCES) $(featreport_SOURCES) $(findkm_SOURCES) \ >- $(freak_SOURCES) $(fuzznuc_SOURCES) $(fuzzpro_SOURCES) \ >- $(fuzztran_SOURCES) $(garnier_SOURCES) $(geecee_SOURCES) \ >- $(getorf_SOURCES) giep.c $(helixturnhelix_SOURCES) \ >- $(histogramtest_SOURCES) $(hmoment_SOURCES) $(iep_SOURCES) \ >- $(infoalign_SOURCES) $(infobase_SOURCES) \ >- $(inforesidue_SOURCES) $(infoseq_SOURCES) $(intconv_SOURCES) \ >- $(isochore_SOURCES) $(jaspextract_SOURCES) $(jaspscan_SOURCES) \ >- $(jembossctl_SOURCES) $(lindna_SOURCES) $(listor_SOURCES) \ >- makenucseq.c makeprotseq.c $(marscan_SOURCES) \ >- $(maskambignuc_SOURCES) $(maskambigprot_SOURCES) \ >- $(maskfeat_SOURCES) $(maskseq_SOURCES) $(matcher_SOURCES) \ >- $(megamerger_SOURCES) $(merger_SOURCES) $(msbar_SOURCES) \ >- $(mwcontam_SOURCES) $(mwfilter_SOURCES) $(needle_SOURCES) \ >- $(newcoils_SOURCES) $(newcpgreport_SOURCES) \ >- $(newcpgseek_SOURCES) $(newseq_SOURCES) $(nohtml_SOURCES) \ >- $(noreturn_SOURCES) $(nospace_SOURCES) $(notab_SOURCES) \ >- $(notseq_SOURCES) $(nthseq_SOURCES) $(nthseqset_SOURCES) \ >- $(octanol_SOURCES) $(oddcomp_SOURCES) $(origsplitter_SOURCES) \ >+ $(diffseq_SOURCES) $(distmat_SOURCES) $(dotmatcher_SOURCES) \ >+ $(dotpath_SOURCES) $(dottup_SOURCES) $(dreg_SOURCES) \ >+ $(edialign_SOURCES) $(einverted_SOURCES) $(embossdata_SOURCES) \ >+ $(embossversion_SOURCES) $(emma_SOURCES) $(emowse_SOURCES) \ >+ $(entrails_SOURCES) $(entret_SOURCES) $(epestfind_SOURCES) \ >+ $(eprimer3_SOURCES) $(equicktandem_SOURCES) \ >+ $(est2genome_SOURCES) $(etandem_SOURCES) \ >+ $(extractalign_SOURCES) $(extractfeat_SOURCES) \ >+ $(extractseq_SOURCES) $(featcopy_SOURCES) \ >+ $(featreport_SOURCES) $(findkm_SOURCES) $(freak_SOURCES) \ >+ $(fuzznuc_SOURCES) $(fuzzpro_SOURCES) $(fuzztran_SOURCES) \ >+ $(garnier_SOURCES) $(geecee_SOURCES) $(getorf_SOURCES) giep.c \ >+ $(helixturnhelix_SOURCES) $(histogramtest_SOURCES) \ >+ $(hmoment_SOURCES) $(iep_SOURCES) $(infoalign_SOURCES) \ >+ $(infobase_SOURCES) $(inforesidue_SOURCES) $(infoseq_SOURCES) \ >+ $(intconv_SOURCES) $(isochore_SOURCES) $(jaspextract_SOURCES) \ >+ $(jaspscan_SOURCES) $(jembossctl_SOURCES) $(lindna_SOURCES) \ >+ $(listor_SOURCES) makenucseq.c makeprotseq.c \ >+ $(marscan_SOURCES) $(maskambignuc_SOURCES) \ >+ $(maskambigprot_SOURCES) $(maskfeat_SOURCES) \ >+ $(maskseq_SOURCES) $(matcher_SOURCES) $(megamerger_SOURCES) \ >+ $(merger_SOURCES) $(msbar_SOURCES) $(mwcontam_SOURCES) \ >+ $(mwfilter_SOURCES) $(needle_SOURCES) $(newcoils_SOURCES) \ >+ $(newcpgreport_SOURCES) $(newcpgseek_SOURCES) \ >+ $(newseq_SOURCES) $(nohtml_SOURCES) $(noreturn_SOURCES) \ >+ $(nospace_SOURCES) $(notab_SOURCES) $(notseq_SOURCES) \ >+ $(nthseq_SOURCES) $(nthseqset_SOURCES) $(octanol_SOURCES) \ >+ $(oddcomp_SOURCES) $(origsplitter_SOURCES) \ > $(origunion_SOURCES) $(palindrome_SOURCES) $(pasteseq_SOURCES) \ > $(patmatdb_SOURCES) $(patmatmotifs_SOURCES) \ > $(patmattest_SOURCES) $(pepcoil_SOURCES) $(pepinfo_SOURCES) \ >@@ -2233,11 +2010,11 @@ > $(tfextract_SOURCES) $(tfm_SOURCES) $(tfscan_SOURCES) \ > $(tmap_SOURCES) $(tranalign_SOURCES) $(transeq_SOURCES) \ > $(treetypedisplay_SOURCES) $(trimest_SOURCES) \ >- $(trimseq_SOURCES) $(trimspace_SOURCES) $(twofeat_SOURCES) \ >- $(union_SOURCES) $(vectorstrip_SOURCES) $(water_SOURCES) \ >- $(whichdb_SOURCES) $(wobble_SOURCES) $(wordcount_SOURCES) \ >- $(wordfinder_SOURCES) $(wordmatch_SOURCES) $(wossname_SOURCES) \ >- $(yank_SOURCES) >+ $(trimseq_SOURCES) $(trimspace_SOURCES) \ >+ $(tryptic_digest_SOURCES) $(twofeat_SOURCES) $(union_SOURCES) \ >+ $(vectorstrip_SOURCES) $(water_SOURCES) $(whichdb_SOURCES) \ >+ $(wobble_SOURCES) $(wordcount_SOURCES) $(wordfinder_SOURCES) \ >+ $(wordmatch_SOURCES) $(wossname_SOURCES) $(yank_SOURCES) > RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \ > html-recursive info-recursive install-data-recursive \ > install-dvi-recursive install-exec-recursive \ >@@ -2338,7 +2115,6 @@ > INSTALL_STRIP_PROGRAM = @INSTALL_STRIP_PROGRAM@ > ISAIXIA64 = @ISAIXIA64@ > ISCYGWIN = @ISCYGWIN@ >-JAVA_OK = @JAVA_OK@ > LD = @LD@ > LDFLAGS = @LDFLAGS@ > LIBOBJS = @LIBOBJS@ >@@ -2361,6 +2137,7 @@ > PACKAGE_NAME = @PACKAGE_NAME@ > PACKAGE_STRING = @PACKAGE_STRING@ > PACKAGE_TARNAME = @PACKAGE_TARNAME@ >+PACKAGE_URL = @PACKAGE_URL@ > PACKAGE_VERSION = @PACKAGE_VERSION@ > PATH_SEPARATOR = @PATH_SEPARATOR@ > PCRE_DATE = @PCRE_DATE@ >@@ -2376,7 +2153,6 @@ > SHELL = @SHELL@ > STRIP = @STRIP@ > VERSION = @VERSION@ >-XLIB = @XLIB@ > XMKMF = @XMKMF@ > X_CFLAGS = @X_CFLAGS@ > X_EXTRA_LIBS = @X_EXTRA_LIBS@ >@@ -2406,7 +2182,6 @@ > docdir = @docdir@ > dvidir = @dvidir@ > exec_prefix = @exec_prefix@ >-havejavac = @havejavac@ > host = @host@ > host_alias = @host_alias@ > host_cpu = @host_cpu@ >@@ -2420,7 +2195,6 @@ > libexecdir = @libexecdir@ > localedir = @localedir@ > localstatedir = @localstatedir@ >-lt_ECHO = @lt_ECHO@ > mandir = @mandir@ > mkdir_p = @mkdir_p@ > oldincludedir = @oldincludedir@ >@@ -2485,7 +2259,7 @@ > density_SOURCES = density.c > descseq_SOURCES = descseq.c > diffseq_SOURCES = diffseq.c >-digest_SOURCES = digest.c >+tryptic_digest_SOURCES = tryptic_digest.c > distmat_SOURCES = distmat.c > dotmatcher_SOURCES = dotmatcher.c > dotpath_SOURCES = dotpath.c >@@ -2890,9 +2664,6 @@ > diffseq$(EXEEXT): $(diffseq_OBJECTS) $(diffseq_DEPENDENCIES) > @rm -f diffseq$(EXEEXT) > $(LINK) $(diffseq_OBJECTS) $(diffseq_LDADD) $(LIBS) >-digest$(EXEEXT): $(digest_OBJECTS) $(digest_DEPENDENCIES) >- @rm -f digest$(EXEEXT) >- $(LINK) $(digest_OBJECTS) $(digest_LDADD) $(LIBS) > distmat$(EXEEXT): $(distmat_OBJECTS) $(distmat_DEPENDENCIES) > @rm -f distmat$(EXEEXT) > $(LINK) $(distmat_OBJECTS) $(distmat_LDADD) $(LIBS) >@@ -3358,6 +3129,9 @@ > trimspace$(EXEEXT): $(trimspace_OBJECTS) $(trimspace_DEPENDENCIES) > @rm -f trimspace$(EXEEXT) > $(LINK) $(trimspace_OBJECTS) $(trimspace_LDADD) $(LIBS) >+tryptic_digest$(EXEEXT): $(tryptic_digest_OBJECTS) $(tryptic_digest_DEPENDENCIES) >+ @rm -f tryptic_digest$(EXEEXT) >+ $(LINK) $(tryptic_digest_OBJECTS) $(tryptic_digest_LDADD) $(LIBS) > twofeat$(EXEEXT): $(twofeat_OBJECTS) $(twofeat_DEPENDENCIES) > @rm -f twofeat$(EXEEXT) > $(LINK) $(twofeat_OBJECTS) $(twofeat_LDADD) $(LIBS) >@@ -3447,7 +3221,6 @@ > @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/density.Po@am__quote@ > @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/descseq.Po@am__quote@ > @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/diffseq.Po@am__quote@ >-@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/digest.Po@am__quote@ > @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/distmat.Po@am__quote@ > @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/dotmatcher.Po@am__quote@ > @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/dotpath.Po@am__quote@ >@@ -3603,6 +3376,7 @@ > @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/trimest.Po@am__quote@ > @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/trimseq.Po@am__quote@ > @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/trimspace.Po@am__quote@ >+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/tryptic_digest.Po@am__quote@ > @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/twofeat.Po@am__quote@ > @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/union.Po@am__quote@ > @AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/vectorstrip.Po@am__quote@ >@@ -3669,7 +3443,7 @@ > # (which will cause the Makefiles to be regenerated when you run `make'); > # (2) otherwise, pass the desired values on the `make' command line. > $(RECURSIVE_TARGETS): >- @failcom='exit 1'; \ >+ @fail= failcom='exit 1'; \ > for f in x $$MAKEFLAGS; do \ > case $$f in \ > *=* | --[!k]*);; \ >@@ -3694,7 +3468,7 @@ > fi; test -z "$$fail" > > $(RECURSIVE_CLEAN_TARGETS): >- @failcom='exit 1'; \ >+ @fail= failcom='exit 1'; \ > for f in x $$MAKEFLAGS; do \ > case $$f in \ > *=* | --[!k]*);; \
<b>You cannot view the attachment while viewing its details because your browser does not support IFRAMEs. <a href="attachment.cgi?id=242673">View the attachment on a separate page</a>.</b>
View Attachment As Diff
View Attachment As Raw
Actions:
View
|
Diff
Attachments on
bug 330507
:
242671
| 242673 |
242675
