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Gentoo's Bugzilla – Attachment 242137 Details for
Bug 331935
sci-biology/wgs-assembler does not respect LDFLAGS
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Build log
wgs-assembler-6.1:20100809-194829.log (text/plain), 769.63 KB, created by
Diego Elio Pettenò (RETIRED)
on 2010-08-09 20:57:32 UTC
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Description:
Build log
Filename:
MIME Type:
Creator:
Diego Elio Pettenò (RETIRED)
Created:
2010-08-09 20:57:32 UTC
Size:
769.63 KB
patch
obsolete
> * CPV: sci-biology/wgs-assembler-6.1 > * REPO: gentoo > * USE: elibc_glibc kernel_linux test userland_GNU x86 >>>> Unpacking source... >>>> Unpacking wgs-6.1.tar.bz2 to /var/tmp/portage/sci-biology/wgs-assembler-6.1/work >>>> Source unpacked in /var/tmp/portage/sci-biology/wgs-assembler-6.1/work >>>> Preparing source in /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1 ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1 ... >WARNING: 'python' program found, but can't find include file 'Python.h' -- is python installed correctly? >WARNING: Set PYTHONHOME to the directory containing include/Pyhton.h >WARNING: Will not build ATAC. >i686-pc-linux-gnu-gcc -O2 -pipe -L/usr/local/lib -o ./makepath build/makepath.c -pthread -ldl -lm -lbz2 >Configured. >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1 ... >make -j14 -C kmer -j1 install >make: Entering directory `/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer' >making ../kmer/libutil/kazlib/sfx.c.d >making ../kmer/libutil/kazlib/list.c.d >making ../kmer/libutil/kazlib/hash.c.d >making ../kmer/libutil/kazlib/except.c.d >making ../kmer/libutil/kazlib/dict.c.d >i686-pc-linux-gnu-gcc -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/mt19937ar/mt19937ar.o -c ../kmer/libutil/mt19937ar/mt19937ar.c >i686-pc-linux-gnu-gcc -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/mt19937ar/mt19937ar-test.o -c ../kmer/libutil/mt19937ar/mt19937ar-test.c >i686-pc-linux-gnu-gcc -L/usr/local/lib -o ../kmer/libutil/mt19937ar/mt19937ar-test ../kmer/libutil/mt19937ar/mt19937ar.o ../kmer/libutil/mt19937ar/mt19937ar-test.o -pthread -ldl -lm -lbz2 >../kmer/libutil/mt19937ar/mt19937ar-test | diff - ../kmer/libutil/mt19937ar/mt19937ar.out > ../kmer/libutil/mt19937ar/diffs 2>&1 >if test -s ../kmer/libutil/mt19937ar/diffs ; then echo 'MT19937: TEST FAILED'; else echo 'MT19937: Test Passed'; fi >MT19937: Test Passed >touch ../kmer/libutil/mt19937ar/test.c >../kmer/libutil/mt19937ar/mt19937ar-test | diff - ../kmer/libutil/mt19937ar/mt19937ar.out >making ../kmer/libutil/mt19937ar/test.c.d >making ../kmer/libutil/mt19937ar/mt19937ar.c.d >making ../kmer/libutil/sweatShop.C.d >making ../kmer/libutil/speedCounter.C.d >making ../kmer/libutil/recordFile.C.d >making ../kmer/libutil/readBuffer.C.d >making ../kmer/libutil/intervalList.C.d >making ../kmer/libutil/fibonacciNumbers.C.d >making ../kmer/libutil/bitPackedFile.C.d >making ../kmer/libutil/bitPackedArray.C.d >making ../kmer/libutil/bigQueue.C.d >making ../kmer/libutil/util.c.d >making ../kmer/libutil/qsort_mt.c.d >making ../kmer/libutil/palloc.c.d >making ../kmer/libutil/md5.c.d >making ../kmer/libutil/file.c.d >making ../kmer/libseq/test-merStream.C.d >making ../kmer/libseq/test-seqStream.C.d >making ../kmer/libseq/test-seqCache.C.d >making ../kmer/libseq/merStream.C.d >making ../kmer/libseq/seqStream.C.d >making ../kmer/libseq/seqCache.C.d >making ../kmer/libseq/seqFactory.C.d >making ../kmer/libseq/sffFile.C.d >making ../kmer/libseq/seqStore.C.d >making ../kmer/libseq/fastaStdin.C.d >making ../kmer/libseq/fastaFile.C.d >making ../kmer/libbio/reversecomplement.c.d >making ../kmer/libbio/halign.c.d >making ../kmer/libbio/alphabet-colorspace.c.d >making ../kmer/libbio/alphabet-acgtspace.c.d >making ../kmer/libbio/alphabet.c.d >making ../kmer/libmeryl/libmeryl.C.d >making ../kmer/libkmer/mask.C.d >making ../kmer/libkmer/percentCovered.C.d >making ../kmer/libkmer/driver-posDB.C.d >making ../kmer/libkmer/driver-existDB.C.d >making ../kmer/libkmer/positionDB.C.d >making ../kmer/libkmer/positionDB-sort.C.d >making ../kmer/libkmer/positionDB-mismatch.C.d >making ../kmer/libkmer/positionDB-file.C.d >making ../kmer/libkmer/positionDB-dump.C.d >making ../kmer/libkmer/positionDB-access.C.d >making ../kmer/libkmer/existDB.C.d >making ../kmer/libkmer/existDB-state.C.d >making ../kmer/libkmer/existDB-create-from-meryl.C.d >making ../kmer/libkmer/existDB-create-from-fasta.C.d >making meryl/maskMers.C.d >making meryl/mapMers-depth.C.d >making meryl/mapMers.C.d >making meryl/asmMerQC.C.d >making meryl/meryl.C.d >making meryl/unaryOp.C.d >making meryl/merge.C.d >making meryl/estimate.C.d >making meryl/dump.C.d >making meryl/build-threads.C.d >making meryl/build.C.d >making meryl/binaryOp.C.d >making meryl/args.C.d >make: Leaving directory `/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer' >make: Entering directory `/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer' >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libmeryl/ -I../kmer/libkmer/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/meryl.o -c meryl/meryl.C >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libmeryl/ -I../kmer/libkmer/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/args.o -c meryl/args.C >meryl/args.C: In member function âbool merylArgs::writeConfig()â: >meryl/args.C:568:49: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >meryl/args.C:570:40: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >meryl/args.C: In constructor âmerylArgs::merylArgs(const char*)â: >meryl/args.C:509:36: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >meryl/args.C:517:39: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >meryl/args.C: In function âchar* readString(FILE*)â: >meryl/args.C:40:36: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >meryl/args.C:50:37: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >meryl/args.C: In function âbool writeString(const char*, FILE*)â: >meryl/args.C:19:39: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >meryl/args.C:20:39: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >meryl/args.C:22:39: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libmeryl/ -I../kmer/libkmer/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/binaryOp.o -c meryl/binaryOp.C >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libmeryl/ -I../kmer/libkmer/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/build.o -c meryl/build.C >meryl/build.C:243:2: warning: #warning not submitting prepareBatch to grid >meryl/build.C: In function âvoid build(merylArgs*)â: >meryl/build.C:765:41: warning: deprecated conversion from string constant to âchar*â >meryl/build.C:766:41: warning: deprecated conversion from string constant to âchar*â >meryl/build.C:767:41: warning: deprecated conversion from string constant to âchar*â >meryl/build.C:771:22: warning: deprecated conversion from string constant to âchar*â >meryl/build.C:776:22: warning: deprecated conversion from string constant to âchar*â >meryl/build.C:783:41: warning: deprecated conversion from string constant to âchar*â >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libmeryl/ -I../kmer/libkmer/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/build-threads.o -c meryl/build-threads.C >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libmeryl/ -I../kmer/libkmer/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/dump.o -c meryl/dump.C >meryl/dump.C:50:2: warning: #warning make this a test >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libmeryl/ -I../kmer/libkmer/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/estimate.o -c meryl/estimate.C >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libmeryl/ -I../kmer/libkmer/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/merge.o -c meryl/merge.C >meryl/merge.C: In function âvoid multipleOperations(merylArgs*)â: >meryl/merge.C:32:96: warning: format â%dâ expects type âintâ, but argument 3 has type âu32bitâ >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libmeryl/ -I../kmer/libkmer/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/unaryOp.o -c meryl/unaryOp.C >rm -f meryl/libmerylguts.a && ar ruvs meryl/libmerylguts.a meryl/args.o meryl/binaryOp.o meryl/build.o meryl/build-threads.o meryl/dump.o meryl/estimate.o meryl/merge.o meryl/unaryOp.o >ar: creating meryl/libmerylguts.a >a - meryl/args.o >a - meryl/binaryOp.o >a - meryl/build.o >a - meryl/build-threads.o >a - meryl/dump.o >a - meryl/estimate.o >a - meryl/merge.o >a - meryl/unaryOp.o >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libmeryl/libmeryl.o -c ../kmer/libmeryl/libmeryl.C >../kmer/libmeryl/libmeryl.C:72:2: warning: #warning not checking pmagic >../kmer/libmeryl/libmeryl.C:6:24: warning: deprecated conversion from string constant to âchar*â >../kmer/libmeryl/libmeryl.C:7:24: warning: deprecated conversion from string constant to âchar*â >../kmer/libmeryl/libmeryl.C:8:24: warning: deprecated conversion from string constant to âchar*â >../kmer/libmeryl/libmeryl.C:9:24: warning: deprecated conversion from string constant to âchar*â >../kmer/libmeryl/libmeryl.C:10:24: warning: deprecated conversion from string constant to âchar*â >../kmer/libmeryl/libmeryl.C:11:24: warning: deprecated conversion from string constant to âchar*â >rm -f ../kmer/libmeryl/libmeryl.a && ar ruvs ../kmer/libmeryl/libmeryl.a ../kmer/libmeryl/libmeryl.o >ar: creating ../kmer/libmeryl/libmeryl.a >a - ../kmer/libmeryl/libmeryl.o >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libutil/ -I../kmer/libbio/ -I../kmer/libseq/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libseq/fastaFile.o -c ../kmer/libseq/fastaFile.C >../kmer/libseq/fastaFile.C: In member function âvoid fastaFile::constructIndex()â: >../kmer/libseq/fastaFile.C:515:55: warning: format â%uâ expects type âunsigned intâ, but argument 5 has type âu32bitâ >../kmer/libseq/fastaFile.C:566:76: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libseq/fastaFile.C:567:76: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libseq/fastaFile.C:568:76: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libseq/fastaFile.C: In member function âvoid fastaFile::loadIndex(char*)â: >../kmer/libseq/fastaFile.C:350:49: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libseq/fastaFile.C:370:71: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libseq/fastaFile.C:371:71: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libutil/ -I../kmer/libbio/ -I../kmer/libseq/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libseq/fastaStdin.o -c ../kmer/libseq/fastaStdin.C >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libutil/ -I../kmer/libbio/ -I../kmer/libseq/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libseq/seqStore.o -c ../kmer/libseq/seqStore.C >../kmer/libseq/seqStore.C: In member function âvoid seqStore::loadIndex()â: >../kmer/libseq/seqStore.C:320:199: warning: format â%lluâ expects type âlong long unsigned intâ, but argument 4 has type âlong unsigned intâ >../kmer/libseq/seqStore.C:321:199: warning: format â%lluâ expects type âlong long unsigned intâ, but argument 4 has type âlong unsigned intâ >../kmer/libseq/seqStore.C:322:199: warning: format â%lluâ expects type âlong long unsigned intâ, but argument 4 has type âlong unsigned intâ >../kmer/libseq/seqStore.C: In function âvoid constructSeqStore(char*, seqCache*)â: >../kmer/libseq/seqStore.C:562:66: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libseq/seqStore.C:566:63: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libseq/seqStore.C:570:51: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libseq/seqStore.C:573:46: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libseq/seqStore.C: In member function âvoid seqStore::loadIndex()â: >../kmer/libseq/seqStore.C:318:50: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libseq/seqStore.C:329:73: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libseq/seqStore.C:332:70: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libseq/seqStore.C:336:67: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libseq/seqStore.C: In member function âvirtual seqFile* seqStore::openFile(const char*)â: >../kmer/libseq/seqStore.C:73:39: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libseq/seqStore.C:74:39: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libseq/seqStore.C: In constructor âseqStore::seqStore(const char*)â: >../kmer/libseq/seqStore.C:21:50: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >In file included from /usr/include/string.h:642:0, > from ../kmer/libutil/u32bitList.H:4, > from ../kmer/libutil/util++.H:29, > from ../kmer/libseq/seqStore.H:4, > from ../kmer/libseq/seqStore.C:2: >In function âvoid* memset(void*, int, size_t)â, > inlined from âvoid constructSeqStore(char*, seqCache*)â at ../kmer/libseq/seqStore.C:396:43: >/usr/include/bits/string3.h:83:32: warning: call to â__warn_memset_zero_lenâ declared with attribute warning: memset used with constant zero length parameter; this could be due to transposed parameters >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libutil/ -I../kmer/libbio/ -I../kmer/libseq/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libseq/sffFile.o -c ../kmer/libseq/sffFile.C >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libutil/ -I../kmer/libbio/ -I../kmer/libseq/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libseq/seqFactory.o -c ../kmer/libseq/seqFactory.C >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libutil/ -I../kmer/libbio/ -I../kmer/libseq/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libseq/seqCache.o -c ../kmer/libseq/seqCache.C >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libutil/ -I../kmer/libbio/ -I../kmer/libseq/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libseq/seqStream.o -c ../kmer/libseq/seqStream.C >../kmer/libseq/seqStream.C: In constructor âseqStream::seqStream(const char*)â: >../kmer/libseq/seqStream.C:23:66: warning: format â%lluâ expects type âlong long unsigned intâ, but argument 3 has type âlong unsigned intâ >../kmer/libseq/seqStream.C:23:66: warning: format â%lluâ expects type âlong long unsigned intâ, but argument 4 has type âu32bitâ >../kmer/libseq/seqStream.C: In member function âvoid seqStream::tradeSpaceForTime()â: >../kmer/libseq/seqStream.C:147:90: warning: format â%luâ expects type âlong unsigned intâ, but argument 3 has type âu64bitâ >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libutil/ -I../kmer/libbio/ -I../kmer/libseq/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libseq/merStream.o -c ../kmer/libseq/merStream.C >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libutil/ -I../kmer/libbio/ -I../kmer/libseq/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libseq/test-seqCache.o -c ../kmer/libseq/test-seqCache.C >In file included from ../kmer/libseq/test-seqCache.C:7:0: >../kmer/libseq/test-correctSequence.H: In function âvoid generateCorrectSequence(u32bit, u32bit, u32bit)â: >../kmer/libseq/test-correctSequence.H:45:55: warning: format â%dâ expects type âintâ, but argument 3 has type âu32bitâ >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libutil/ -I../kmer/libbio/ -I../kmer/libseq/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libseq/test-seqStream.o -c ../kmer/libseq/test-seqStream.C >In file included from ../kmer/libseq/test-seqStream.C:7:0: >../kmer/libseq/test-correctSequence.H: In function âvoid generateCorrectSequence(u32bit, u32bit, u32bit)â: >../kmer/libseq/test-correctSequence.H:45:55: warning: format â%dâ expects type âintâ, but argument 3 has type âu32bitâ >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libutil/ -I../kmer/libbio/ -I../kmer/libseq/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libseq/test-merStream.o -c ../kmer/libseq/test-merStream.C >../kmer/libseq/test-merStream.C:11:2: warning: #warning HOW DO WE TEST IF WE GET ALL THE MERS? >In file included from ../kmer/libseq/test-merStream.C:7:0: >../kmer/libseq/test-correctSequence.H: In function âvoid generateCorrectSequence(u32bit, u32bit, u32bit)â: >../kmer/libseq/test-correctSequence.H:45:55: warning: format â%dâ expects type âintâ, but argument 3 has type âu32bitâ >../kmer/libseq/test-merStream.C: In function âint main(int, char**)â: >../kmer/libseq/test-merStream.C:219:80: warning: deprecated conversion from string constant to âchar*â >../kmer/libseq/test-merStream.C:223:64: warning: deprecated conversion from string constant to âchar*â >../kmer/libseq/test-merStream.C:225:64: warning: deprecated conversion from string constant to âchar*â >../kmer/libseq/test-merStream.C:228:64: warning: deprecated conversion from string constant to âchar*â >../kmer/libseq/test-merStream.C:239:90: warning: deprecated conversion from string constant to âchar*â >../kmer/libseq/test-merStream.C:243:60: warning: deprecated conversion from string constant to âchar*â >../kmer/libseq/test-merStream.C:245:60: warning: deprecated conversion from string constant to âchar*â >../kmer/libseq/test-merStream.C:248:60: warning: deprecated conversion from string constant to âchar*â >rm -f ../kmer/libseq/libseq.a && ar ruvs ../kmer/libseq/libseq.a ../kmer/libseq/fastaFile.o ../kmer/libseq/fastaStdin.o ../kmer/libseq/seqStore.o ../kmer/libseq/sffFile.o ../kmer/libseq/seqFactory.o ../kmer/libseq/seqCache.o ../kmer/libseq/seqStream.o ../kmer/libseq/merStream.o ../kmer/libseq/test-seqCache.o ../kmer/libseq/test-seqStream.o ../kmer/libseq/test-merStream.o >ar: creating ../kmer/libseq/libseq.a >a - ../kmer/libseq/fastaFile.o >a - ../kmer/libseq/fastaStdin.o >a - ../kmer/libseq/seqStore.o >a - ../kmer/libseq/sffFile.o >a - ../kmer/libseq/seqFactory.o >a - ../kmer/libseq/seqCache.o >a - ../kmer/libseq/seqStream.o >a - ../kmer/libseq/merStream.o >a - ../kmer/libseq/test-seqCache.o >a - ../kmer/libseq/test-seqStream.o >a - ../kmer/libseq/test-merStream.o >i686-pc-linux-gnu-gcc -O2 -pipe -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libbio/alphabet.o -c ../kmer/libbio/alphabet.c >i686-pc-linux-gnu-gcc -O2 -pipe -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libbio/alphabet-acgtspace.o -c ../kmer/libbio/alphabet-acgtspace.c >i686-pc-linux-gnu-gcc -O2 -pipe -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libbio/alphabet-colorspace.o -c ../kmer/libbio/alphabet-colorspace.c >i686-pc-linux-gnu-gcc -O2 -pipe -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libbio/halign.o -c ../kmer/libbio/halign.c >i686-pc-linux-gnu-gcc -O2 -pipe -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libbio/reversecomplement.o -c ../kmer/libbio/reversecomplement.c >rm -f ../kmer/libbio/libbio.a && ar ruvs ../kmer/libbio/libbio.a ../kmer/libbio/alphabet.o ../kmer/libbio/alphabet-acgtspace.o ../kmer/libbio/alphabet-colorspace.o ../kmer/libbio/halign.o ../kmer/libbio/reversecomplement.o >ar: creating ../kmer/libbio/libbio.a >a - ../kmer/libbio/alphabet.o >a - ../kmer/libbio/alphabet-acgtspace.o >a - ../kmer/libbio/alphabet-colorspace.o >a - ../kmer/libbio/halign.o >a - ../kmer/libbio/reversecomplement.o >i686-pc-linux-gnu-gcc -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/file.o -c ../kmer/libutil/file.c >../kmer/libutil/file.c: In function âcopyFileâ: >../kmer/libutil/file.c:223:13: warning: ignoring return value of âfwriteâ, declared with attribute warn_unused_result >i686-pc-linux-gnu-gcc -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/md5.o -c ../kmer/libutil/md5.c >i686-pc-linux-gnu-gcc -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/palloc.o -c ../kmer/libutil/palloc.c >i686-pc-linux-gnu-gcc -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/qsort_mt.o -c ../kmer/libutil/qsort_mt.c >i686-pc-linux-gnu-gcc -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/util.o -c ../kmer/libutil/util.c >i686-pc-linux-gnu-g++ -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/bigQueue.o -c ../kmer/libutil/bigQueue.C >../kmer/libutil/bigQueue.C: In member function âbool bigQueue::next()â: >../kmer/libutil/bigQueue.C:302:60: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libutil/bigQueue.C: In member function âvoid bigQueue::mergeTemporaryFiles()â: >../kmer/libutil/bigQueue.C:204:59: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libutil/bigQueue.C:236:49: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libutil/bigQueue.C:255:62: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libutil/bigQueue.C: In member function âvoid bigQueue::sortAndWriteBuffer()â: >../kmer/libutil/bigQueue.C:147:82: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libutil/bigQueue.C: In member function âvoid bigQueue::add(void*)â: >../kmer/libutil/bigQueue.C:110:75: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >i686-pc-linux-gnu-g++ -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/bitPackedArray.o -c ../kmer/libutil/bitPackedArray.C >i686-pc-linux-gnu-g++ -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/bitPackedFile.o -c ../kmer/libutil/bitPackedFile.C >../kmer/libutil/bitPackedFile.C: In member function âvoid bitPackedFile::flushDirty()â: >../kmer/libutil/bitPackedFile.C:230:47: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result >../kmer/libutil/bitPackedFile.C: In constructor âbitPackedFile::bitPackedFile(const char*, u64bit, bool)â: >../kmer/libutil/bitPackedFile.C:107:41: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result >../kmer/libutil/bitPackedFile.C:108:38: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result >../kmer/libutil/bitPackedFile.C:109:38: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result >i686-pc-linux-gnu-g++ -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/fibonacciNumbers.o -c ../kmer/libutil/fibonacciNumbers.C >i686-pc-linux-gnu-g++ -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/intervalList.o -c ../kmer/libutil/intervalList.C >i686-pc-linux-gnu-g++ -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/readBuffer.o -c ../kmer/libutil/readBuffer.C >../kmer/libutil/readBuffer.C: In constructor âreadBuffer::readBuffer(const char*, u32bit)â: >../kmer/libutil/readBuffer.C:39:39: warning: too many arguments for format >i686-pc-linux-gnu-g++ -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/recordFile.o -c ../kmer/libutil/recordFile.C >../kmer/libutil/recordFile.C: In member function âvoid recordFile::seek(u64bit, bool)â: >../kmer/libutil/recordFile.C:231:43: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >../kmer/libutil/recordFile.C: In member function âvoid recordFile::flushDirty()â: >../kmer/libutil/recordFile.C:197:41: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result >../kmer/libutil/recordFile.C: In destructor ârecordFile::~recordFile()â: >../kmer/libutil/recordFile.C:151:53: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result >../kmer/libutil/recordFile.C:152:53: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result >../kmer/libutil/recordFile.C:153:53: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result >../kmer/libutil/recordFile.C:154:53: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result >../kmer/libutil/recordFile.C:155:53: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result >../kmer/libutil/recordFile.C:156:65: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result >../kmer/libutil/recordFile.C: In constructor ârecordFile::recordFile(const char*, u32bit, u32bit, char)â: >../kmer/libutil/recordFile.C:68:53: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result >../kmer/libutil/recordFile.C:69:53: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result >../kmer/libutil/recordFile.C:70:53: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result >../kmer/libutil/recordFile.C:71:53: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result >../kmer/libutil/recordFile.C:72:53: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result >../kmer/libutil/recordFile.C:73:65: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result >../kmer/libutil/recordFile.C:112:52: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >../kmer/libutil/recordFile.C:113:52: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >../kmer/libutil/recordFile.C:114:52: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >../kmer/libutil/recordFile.C:115:52: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >../kmer/libutil/recordFile.C:116:52: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >../kmer/libutil/recordFile.C:117:64: warning: ignoring return value of âssize_t read(int, void*, size_t)â, declared with attribute warn_unused_result >i686-pc-linux-gnu-g++ -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/speedCounter.o -c ../kmer/libutil/speedCounter.C >i686-pc-linux-gnu-g++ -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/sweatShop.o -c ../kmer/libutil/sweatShop.C >i686-pc-linux-gnu-gcc -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/kazlib/dict.o -c ../kmer/libutil/kazlib/dict.c >i686-pc-linux-gnu-gcc -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/kazlib/except.o -c ../kmer/libutil/kazlib/except.c >i686-pc-linux-gnu-gcc -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/kazlib/hash.o -c ../kmer/libutil/kazlib/hash.c >../kmer/libutil/kazlib/hash.c: In function âhash_free_nodesâ: >../kmer/libutil/kazlib/hash.c:342:13: warning: âhs.hash_chainâ may be used uninitialized in this function >i686-pc-linux-gnu-gcc -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/kazlib/list.o -c ../kmer/libutil/kazlib/list.c >i686-pc-linux-gnu-gcc -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/kazlib/sfx.o -c ../kmer/libutil/kazlib/sfx.c >rm -f ../kmer/libutil/libutil.a && ar ruvs ../kmer/libutil/libutil.a ../kmer/libutil/file.o ../kmer/libutil/md5.o ../kmer/libutil/palloc.o ../kmer/libutil/qsort_mt.o ../kmer/libutil/util.o ../kmer/libutil/bigQueue.o ../kmer/libutil/bitPackedArray.o ../kmer/libutil/bitPackedFile.o ../kmer/libutil/fibonacciNumbers.o ../kmer/libutil/intervalList.o ../kmer/libutil/readBuffer.o ../kmer/libutil/recordFile.o ../kmer/libutil/speedCounter.o ../kmer/libutil/sweatShop.o ../kmer/libutil/mt19937ar/mt19937ar.o ../kmer/libutil/kazlib/dict.o ../kmer/libutil/kazlib/except.o ../kmer/libutil/kazlib/hash.o ../kmer/libutil/kazlib/list.o ../kmer/libutil/kazlib/sfx.o >ar: creating ../kmer/libutil/libutil.a >a - ../kmer/libutil/file.o >a - ../kmer/libutil/md5.o >a - ../kmer/libutil/palloc.o >a - ../kmer/libutil/qsort_mt.o >a - ../kmer/libutil/util.o >a - ../kmer/libutil/bigQueue.o >a - ../kmer/libutil/bitPackedArray.o >a - ../kmer/libutil/bitPackedFile.o >a - ../kmer/libutil/fibonacciNumbers.o >a - ../kmer/libutil/intervalList.o >a - ../kmer/libutil/readBuffer.o >a - ../kmer/libutil/recordFile.o >a - ../kmer/libutil/speedCounter.o >a - ../kmer/libutil/sweatShop.o >a - ../kmer/libutil/mt19937ar/mt19937ar.o >a - ../kmer/libutil/kazlib/dict.o >a - ../kmer/libutil/kazlib/except.o >a - ../kmer/libutil/kazlib/hash.o >a - ../kmer/libutil/kazlib/list.o >a - ../kmer/libutil/kazlib/sfx.o >i686-pc-linux-gnu-g++ -L/usr/local/lib -o meryl/meryl meryl/meryl.o meryl/libmerylguts.a ../kmer/libmeryl/libmeryl.a ../kmer/libseq/libseq.a ../kmer/libbio/libbio.a ../kmer/libutil/libutil.a -pthread -ldl -lm -lbz2 >../kmer/libseq/libseq.a(seqStore.o): In function `constructSeqStore(char*, seqCache*)': >seqStore.C:(.text+0x1f90): warning: memset used with constant zero length parameter; this could be due to transposed parameters >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libmeryl/ -I../kmer/libkmer/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/asmMerQC.o -c meryl/asmMerQC.C >meryl/asmMerQC.C: In function âvoid compare(merylStreamReader*, merylStreamReader*, kMer&, u32bit, u32bit (*)[6])â: >meryl/asmMerQC.C:111:12: warning: suggest explicit braces to avoid ambiguous âelseâ >meryl/asmMerQC.C:130:10: warning: suggest explicit braces to avoid ambiguous âelseâ >meryl/asmMerQC.C:149:8: warning: suggest explicit braces to avoid ambiguous âelseâ >meryl/asmMerQC.C: In function âint main(int, char**)â: >meryl/asmMerQC.C:384:81: warning: deprecated conversion from string constant to âchar*â >meryl/asmMerQC.C:385:81: warning: deprecated conversion from string constant to âchar*â >meryl/asmMerQC.C:386:81: warning: deprecated conversion from string constant to âchar*â >meryl/asmMerQC.C:387:81: warning: deprecated conversion from string constant to âchar*â >meryl/asmMerQC.C:388:81: warning: deprecated conversion from string constant to âchar*â >meryl/asmMerQC.C:389:81: warning: deprecated conversion from string constant to âchar*â >i686-pc-linux-gnu-g++ -L/usr/local/lib -o meryl/asmMerQC meryl/asmMerQC.o ../kmer/libmeryl/libmeryl.a ../kmer/libseq/libseq.a ../kmer/libbio/libbio.a ../kmer/libutil/libutil.a -pthread -ldl -lm -lbz2 >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libmeryl/ -I../kmer/libkmer/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/mapMers.o -c meryl/mapMers.C >In file included from meryl/mapMers.C:9:0: >../kmer/libkmer/existDB.H: In member function âvoid existDB::insertMer(u64bit, u64bit, u64bit, u64bit*)â: >../kmer/libkmer/existDB.H:83:8: warning: suggest explicit braces to avoid ambiguous âelseâ >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libmeryl/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libkmer/existDB-create-from-fasta.o -c ../kmer/libkmer/existDB-create-from-fasta.C >In file included from ../kmer/libkmer/existDB-create-from-fasta.C:5:0: >../kmer/libkmer/existDB.H: In member function âvoid existDB::insertMer(u64bit, u64bit, u64bit, u64bit*)â: >../kmer/libkmer/existDB.H:83:8: warning: suggest explicit braces to avoid ambiguous âelseâ >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libmeryl/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libkmer/existDB-create-from-meryl.o -c ../kmer/libkmer/existDB-create-from-meryl.C >In file included from ../kmer/libkmer/existDB-create-from-meryl.C:5:0: >../kmer/libkmer/existDB.H: In member function âvoid existDB::insertMer(u64bit, u64bit, u64bit, u64bit*)â: >../kmer/libkmer/existDB.H:83:8: warning: suggest explicit braces to avoid ambiguous âelseâ >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libmeryl/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libkmer/existDB-state.o -c ../kmer/libkmer/existDB-state.C >In file included from ../kmer/libkmer/existDB-state.C:5:0: >../kmer/libkmer/existDB.H: In member function âvoid existDB::insertMer(u64bit, u64bit, u64bit, u64bit*)â: >../kmer/libkmer/existDB.H:83:8: warning: suggest explicit braces to avoid ambiguous âelseâ >../kmer/libkmer/existDB-state.C: In member function âbool existDB::loadState(const char*, bool, bool)â: >../kmer/libkmer/existDB-state.C:77:36: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libkmer/existDB-state.C:116:48: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libkmer/existDB-state.C:117:40: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libkmer/existDB-state.C:118:40: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libkmer/existDB-state.C:119:39: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libkmer/existDB-state.C:120:39: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libkmer/existDB-state.C:121:42: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libkmer/existDB-state.C:122:42: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libkmer/existDB-state.C:123:42: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libkmer/existDB-state.C:125:48: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libkmer/existDB-state.C:126:48: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libkmer/existDB-state.C:127:48: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libkmer/existDB-state.C:137:58: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libkmer/existDB-state.C:138:58: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libkmer/existDB-state.C:139:58: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libkmer/existDB-state.C: In member function âvoid existDB::saveState(const char*)â: >../kmer/libkmer/existDB-state.C:35:37: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libkmer/existDB-state.C:37:49: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libkmer/existDB-state.C:38:41: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libkmer/existDB-state.C:39:41: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libkmer/existDB-state.C:40:40: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libkmer/existDB-state.C:41:40: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libkmer/existDB-state.C:42:43: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libkmer/existDB-state.C:43:43: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libkmer/existDB-state.C:44:43: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libkmer/existDB-state.C:46:49: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libkmer/existDB-state.C:47:49: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libkmer/existDB-state.C:48:49: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libkmer/existDB-state.C:50:57: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libkmer/existDB-state.C:51:57: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >../kmer/libkmer/existDB-state.C:52:57: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libmeryl/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libkmer/existDB.o -c ../kmer/libkmer/existDB.C >In file included from ../kmer/libkmer/existDB.C:5:0: >../kmer/libkmer/existDB.H: In member function âvoid existDB::insertMer(u64bit, u64bit, u64bit, u64bit*)â: >../kmer/libkmer/existDB.H:83:8: warning: suggest explicit braces to avoid ambiguous âelseâ >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libmeryl/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libkmer/positionDB-access.o -c ../kmer/libkmer/positionDB-access.C >../kmer/libkmer/positionDB-access.C: In member function âvoid positionDB::filter(u64bit, u64bit)â: >../kmer/libkmer/positionDB-access.C:204:11: warning: unused variable âvvâ >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libmeryl/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libkmer/positionDB-dump.o -c ../kmer/libkmer/positionDB-dump.C >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libmeryl/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libkmer/positionDB-file.o -c ../kmer/libkmer/positionDB-file.C >../kmer/libkmer/positionDB-file.C: In member function âvoid positionDB::saveState(const char*)â: >../kmer/libkmer/positionDB-file.C:37:39: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result >../kmer/libkmer/positionDB-file.C:39:39: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result >../kmer/libkmer/positionDB-file.C:95:39: warning: ignoring return value of âssize_t write(int, const void*, size_t)â, declared with attribute warn_unused_result >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libmeryl/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libkmer/positionDB-mismatch.o -c ../kmer/libkmer/positionDB-mismatch.C >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libmeryl/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libkmer/positionDB-sort.o -c ../kmer/libkmer/positionDB-sort.C >../kmer/libkmer/positionDB-sort.C: In member function âvoid positionDB::sortAndRepackBucket(u64bit)â: >../kmer/libkmer/positionDB-sort.C:37:86: warning: format â%10luâ expects type âlong unsigned intâ, but argument 3 has type âu64bitâ >../kmer/libkmer/positionDB-sort.C:37:86: warning: format â%10luâ expects type âlong unsigned intâ, but argument 4 has type âu64bitâ >../kmer/libkmer/positionDB-sort.C:37:86: warning: format â%10luâ expects type âlong unsigned intâ, but argument 5 has type âu64bitâ >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libmeryl/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libkmer/positionDB.o -c ../kmer/libkmer/positionDB.C >In file included from ../kmer/libkmer/positionDB.C:7:0: >../kmer/libkmer/existDB.H: In member function âvoid existDB::insertMer(u64bit, u64bit, u64bit, u64bit*)â: >../kmer/libkmer/existDB.H:83:8: warning: suggest explicit braces to avoid ambiguous âelseâ >rm -f ../kmer/libkmer/libkmer.a && ar ruvs ../kmer/libkmer/libkmer.a ../kmer/libkmer/existDB-create-from-fasta.o ../kmer/libkmer/existDB-create-from-meryl.o ../kmer/libkmer/existDB-state.o ../kmer/libkmer/existDB.o ../kmer/libkmer/positionDB-access.o ../kmer/libkmer/positionDB-dump.o ../kmer/libkmer/positionDB-file.o ../kmer/libkmer/positionDB-mismatch.o ../kmer/libkmer/positionDB-sort.o ../kmer/libkmer/positionDB.o >ar: creating ../kmer/libkmer/libkmer.a >a - ../kmer/libkmer/existDB-create-from-fasta.o >a - ../kmer/libkmer/existDB-create-from-meryl.o >a - ../kmer/libkmer/existDB-state.o >a - ../kmer/libkmer/existDB.o >a - ../kmer/libkmer/positionDB-access.o >a - ../kmer/libkmer/positionDB-dump.o >a - ../kmer/libkmer/positionDB-file.o >a - ../kmer/libkmer/positionDB-mismatch.o >a - ../kmer/libkmer/positionDB-sort.o >a - ../kmer/libkmer/positionDB.o >i686-pc-linux-gnu-g++ -L/usr/local/lib -o meryl/mapMers meryl/mapMers.o ../kmer/libkmer/libkmer.a ../kmer/libmeryl/libmeryl.a ../kmer/libseq/libseq.a ../kmer/libbio/libbio.a ../kmer/libutil/libutil.a -pthread -ldl -lm -lbz2 >../kmer/libseq/libseq.a(seqStore.o): In function `constructSeqStore(char*, seqCache*)': >seqStore.C:(.text+0x1f90): warning: memset used with constant zero length parameter; this could be due to transposed parameters >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libmeryl/ -I../kmer/libkmer/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/mapMers-depth.o -c meryl/mapMers-depth.C >In file included from meryl/mapMers-depth.C:9:0: >../kmer/libkmer/existDB.H: In member function âvoid existDB::insertMer(u64bit, u64bit, u64bit, u64bit*)â: >../kmer/libkmer/existDB.H:83:8: warning: suggest explicit braces to avoid ambiguous âelseâ >meryl/mapMers-depth.C: In function âint main(int, char**)â: >meryl/mapMers-depth.C:86:67: warning: format â%6luâ expects type âlong unsigned intâ, but argument 4 has type âintâ >meryl/mapMers-depth.C:91:65: warning: format â%6luâ expects type âlong unsigned intâ, but argument 4 has type âintâ >i686-pc-linux-gnu-g++ -L/usr/local/lib -o meryl/mapMers-depth meryl/mapMers-depth.o ../kmer/libkmer/libkmer.a ../kmer/libmeryl/libmeryl.a ../kmer/libseq/libseq.a ../kmer/libbio/libbio.a ../kmer/libutil/libutil.a -pthread -ldl -lm -lbz2 >../kmer/libseq/libseq.a(seqStore.o): In function `constructSeqStore(char*, seqCache*)': >seqStore.C:(.text+0x1f90): warning: memset used with constant zero length parameter; this could be due to transposed parameters >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libmeryl/ -I../kmer/libkmer/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/testPositionBias.o -c meryl/testPositionBias.C >meryl/testPositionBias.C: In function âvoid showBias(u32bit)â: >meryl/testPositionBias.C:54:43: warning: deprecated conversion from string constant to âchar*â >meryl/testPositionBias.C:55:50: warning: deprecated conversion from string constant to âchar*â >meryl/testPositionBias.C:56:60: warning: deprecated conversion from string constant to âchar*â >meryl/testPositionBias.C: In function âdouble computeRMSD(u32bit)â: >meryl/testPositionBias.C:83:43: warning: deprecated conversion from string constant to âchar*â >meryl/testPositionBias.C:84:50: warning: deprecated conversion from string constant to âchar*â >meryl/testPositionBias.C:85:60: warning: deprecated conversion from string constant to âchar*â >i686-pc-linux-gnu-g++ -L/usr/local/lib -o meryl/testPositionBias meryl/testPositionBias.o ../kmer/libkmer/libkmer.a ../kmer/libmeryl/libmeryl.a ../kmer/libseq/libseq.a ../kmer/libbio/libbio.a ../kmer/libutil/libutil.a -pthread -ldl -lm -lbz2 >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libmeryl/ -I../kmer/libkmer/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o meryl/maskMers.o -c meryl/maskMers.C >meryl/maskMers.C: In member function âvoid merMaskedSequence::saveMasking()â: >meryl/maskMers.C:166:59: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >meryl/maskMers.C:167:59: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >meryl/maskMers.C:168:59: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >meryl/maskMers.C:171:67: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >meryl/maskMers.C:172:67: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >meryl/maskMers.C: In member function âvoid merMaskedSequence::loadMasking(u32bit)â: >meryl/maskMers.C:125:52: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >meryl/maskMers.C:126:52: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >meryl/maskMers.C:134:59: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >meryl/maskMers.C:149:68: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >meryl/maskMers.C:150:68: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >i686-pc-linux-gnu-g++ -L/usr/local/lib -o meryl/maskMers meryl/maskMers.o ../kmer/libkmer/libkmer.a ../kmer/libmeryl/libmeryl.a ../kmer/libseq/libseq.a ../kmer/libbio/libbio.a ../kmer/libutil/libutil.a -pthread -ldl -lm -lbz2 >../kmer/libseq/libseq.a(seqStore.o): In function `constructSeqStore(char*, seqCache*)': >seqStore.C:(.text+0x1f90): warning: memset used with constant zero length parameter; this could be due to transposed parameters >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libmeryl/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libkmer/driver-existDB.o -c ../kmer/libkmer/driver-existDB.C >In file included from ../kmer/libkmer/driver-existDB.C:7:0: >../kmer/libkmer/existDB.H: In member function âvoid existDB::insertMer(u64bit, u64bit, u64bit, u64bit*)â: >../kmer/libkmer/existDB.H:83:8: warning: suggest explicit braces to avoid ambiguous âelseâ >../kmer/libkmer/driver-existDB.C: In function âint testExhaustive(char*, char*, u32bit)â: >../kmer/libkmer/driver-existDB.C:102:55: warning: format â%016lxâ expects type âlong unsigned intâ, but argument 3 has type âu64bitâ >../kmer/libkmer/driver-existDB.C:104:63: warning: format â%016lxâ expects type âlong unsigned intâ, but argument 3 has type âu64bitâ >../kmer/libkmer/driver-existDB.C:118:36: warning: format â%016lxâ expects type âlong unsigned intâ, but argument 3 has type âu64bitâ >i686-pc-linux-gnu-g++ -L/usr/local/lib -o ../kmer/libkmer/existDB ../kmer/libkmer/driver-existDB.o ../kmer/libkmer/libkmer.a ../kmer/libmeryl/libmeryl.a ../kmer/libseq/libseq.a ../kmer/libbio/libbio.a ../kmer/libutil/libutil.a -pthread -ldl -lm -lbz2 >../kmer/libseq/libseq.a(seqStore.o): In function `constructSeqStore(char*, seqCache*)': >seqStore.C:(.text+0x1f90): warning: memset used with constant zero length parameter; this could be due to transposed parameters >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libmeryl/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libkmer/driver-posDB.o -c ../kmer/libkmer/driver-posDB.C >In file included from ../kmer/libkmer/driver-posDB.C:7:0: >../kmer/libkmer/existDB.H: In member function âvoid existDB::insertMer(u64bit, u64bit, u64bit, u64bit*)â: >../kmer/libkmer/existDB.H:83:8: warning: suggest explicit braces to avoid ambiguous âelseâ >i686-pc-linux-gnu-g++ -L/usr/local/lib -o ../kmer/libkmer/positionDB ../kmer/libkmer/driver-posDB.o ../kmer/libkmer/libkmer.a ../kmer/libmeryl/libmeryl.a ../kmer/libseq/libseq.a ../kmer/libbio/libbio.a ../kmer/libutil/libutil.a -pthread -ldl -lm -lbz2 >../kmer/libseq/libseq.a(seqStore.o): In function `constructSeqStore(char*, seqCache*)': >seqStore.C:(.text+0x1f90): warning: memset used with constant zero length parameter; this could be due to transposed parameters >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libmeryl/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libkmer/percentCovered.o -c ../kmer/libkmer/percentCovered.C >In file included from ../kmer/libkmer/percentCovered.C:3:0: >../kmer/libkmer/existDB.H: In member function âvoid existDB::insertMer(u64bit, u64bit, u64bit, u64bit*)â: >../kmer/libkmer/existDB.H:83:8: warning: suggest explicit braces to avoid ambiguous âelseâ >i686-pc-linux-gnu-g++ -L/usr/local/lib -o ../kmer/libkmer/percentCovered ../kmer/libkmer/percentCovered.o ../kmer/libkmer/libkmer.a ../kmer/libmeryl/libmeryl.a ../kmer/libseq/libseq.a ../kmer/libbio/libbio.a ../kmer/libutil/libutil.a -pthread -ldl -lm -lbz2 >../kmer/libseq/libseq.a(seqStore.o): In function `constructSeqStore(char*, seqCache*)': >seqStore.C:(.text+0x1f90): warning: memset used with constant zero length parameter; this could be due to transposed parameters >i686-pc-linux-gnu-g++ -O2 -pipe -I../kmer/libmeryl/ -I../kmer/libbio/ -I../kmer/libseq/ -I../kmer/libutil/ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libkmer/mask.o -c ../kmer/libkmer/mask.C >In file included from ../kmer/libkmer/mask.C:7:0: >../kmer/libkmer/existDB.H: In member function âvoid existDB::insertMer(u64bit, u64bit, u64bit, u64bit*)â: >../kmer/libkmer/existDB.H:83:8: warning: suggest explicit braces to avoid ambiguous âelseâ >i686-pc-linux-gnu-g++ -L/usr/local/lib -o ../kmer/libkmer/mask ../kmer/libkmer/mask.o ../kmer/libkmer/libkmer.a ../kmer/libmeryl/libmeryl.a ../kmer/libseq/libseq.a ../kmer/libbio/libbio.a ../kmer/libutil/libutil.a -pthread -ldl -lm -lbz2 >../kmer/libseq/libseq.a(seqStore.o): In function `constructSeqStore(char*, seqCache*)': >seqStore.C:(.text+0x1f90): warning: memset used with constant zero length parameter; this could be due to transposed parameters >i686-pc-linux-gnu-g++ -L/usr/local/lib -o ../kmer/libseq/test-seqCache ../kmer/libseq/test-seqCache.o ../kmer/libseq/libseq.a ../kmer/libbio/libbio.a ../kmer/libutil/libutil.a -pthread -ldl -lm -lbz2 >../kmer/libseq/libseq.a(seqStore.o): In function `constructSeqStore(char*, seqCache*)': >seqStore.C:(.text+0x1f90): warning: memset used with constant zero length parameter; this could be due to transposed parameters >i686-pc-linux-gnu-g++ -L/usr/local/lib -o ../kmer/libseq/test-seqStream ../kmer/libseq/test-seqStream.o ../kmer/libseq/libseq.a ../kmer/libbio/libbio.a ../kmer/libutil/libutil.a -pthread -ldl -lm -lbz2 >../kmer/libseq/libseq.a(seqStore.o): In function `constructSeqStore(char*, seqCache*)': >seqStore.C:(.text+0x1f90): warning: memset used with constant zero length parameter; this could be due to transposed parameters >i686-pc-linux-gnu-g++ -L/usr/local/lib -o ../kmer/libseq/test-merStream ../kmer/libseq/test-merStream.o ../kmer/libseq/libseq.a ../kmer/libbio/libbio.a ../kmer/libutil/libutil.a -pthread -ldl -lm -lbz2 >../kmer/libseq/libseq.a(seqStore.o): In function `constructSeqStore(char*, seqCache*)': >seqStore.C:(.text+0x1f90): warning: memset used with constant zero length parameter; this could be due to transposed parameters >i686-pc-linux-gnu-gcc -O2 -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ../kmer/libutil/mt19937ar/test.o -c ../kmer/libutil/mt19937ar/test.c >rm -f ../kmer/libutil/mt19937ar/libmt19937ar.a && ar ruvs ../kmer/libutil/mt19937ar/libmt19937ar.a ../kmer/libutil/mt19937ar/mt19937ar.o ../kmer/libutil/mt19937ar/test.o >ar: creating ../kmer/libutil/mt19937ar/libmt19937ar.a >a - ../kmer/libutil/mt19937ar/mt19937ar.o >a - ../kmer/libutil/mt19937ar/test.o >rm -f ../kmer/libutil/kazlib/libkaz.a && ar ruvs ../kmer/libutil/kazlib/libkaz.a ../kmer/libutil/kazlib/dict.o ../kmer/libutil/kazlib/except.o ../kmer/libutil/kazlib/hash.o ../kmer/libutil/kazlib/list.o ../kmer/libutil/kazlib/sfx.o >ar: creating ../kmer/libutil/kazlib/libkaz.a >a - ../kmer/libutil/kazlib/dict.o >a - ../kmer/libutil/kazlib/except.o >a - ../kmer/libutil/kazlib/hash.o >a - ../kmer/libutil/kazlib/list.o >a - ../kmer/libutil/kazlib/sfx.o >make: Leaving directory `/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer' >make -j14 -C src -j1 SITE_NAME=LOCAL >make: Entering directory `/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src' >make: Leaving directory `/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src' >make: Entering directory `/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src' >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_global.o AS_global.C >* Make Target is objs >############################## AS_RUN ############################## >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/fragmentDepth.o fragmentDepth.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/markUniqueUnique.o markUniqueUnique.C >############################## AS_UTL ############################## >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_Hash.o AS_UTL_Hash.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_heap.o AS_UTL_heap.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_Var.o AS_UTL_Var.C >AS_UTL_Hash.C: In function âint DeleteFromHashTable_AS(HashTable_AS*, uint64, uint32)â: >AS_UTL_Hash.C:439:3: warning: comparison between signed and unsigned integer expressions >AS_UTL_Hash.C: In function âuint64 ReplaceInHashTable_AS(HashTable_AS*, uint64, uint32, uint64, uint32)â: >AS_UTL_Hash.C:505:3: warning: comparison between signed and unsigned integer expressions >AS_UTL_Hash.C: In function âint LookupInHashTable_AS(HashTable_AS*, uint64, uint32, uint64*, uint32*)â: >AS_UTL_Hash.C:559:3: warning: comparison between signed and unsigned integer expressions >AS_UTL_heap.C: In function âvoid* NextHeapIterator_AS(HeapIterator_AS*)â: >AS_UTL_heap.C:78:42: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_rand.o AS_UTL_rand.C >AS_UTL_Var.C: In function âint MakeRoom_VA(VarArrayType*, size_t)â: >AS_UTL_Var.C:145:19: warning: comparison between signed and unsigned integer expressions >AS_UTL_Var.C: In function âvoid ReadVA(FILE*, VarArrayType*, FileVarArrayType*)â: >AS_UTL_Var.C:343:58: warning: format â%lldâ expects type âlong long intâ, but argument 4 has type âsize_tâ >AS_UTL_Var.C:343:58: warning: format â%lldâ expects type âlong long intâ, but argument 5 has type âsize_tâ >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_interval.o AS_UTL_interval.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/UnionFind_AS.o UnionFind_AS.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_skiplist.o AS_UTL_skiplist.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_alloc.o AS_UTL_alloc.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_fileIO.o AS_UTL_fileIO.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_qsort_mt.o AS_UTL_qsort_mt.C >AS_UTL_fileIO.C: In function âoff_t AS_UTL_sizeOfFile(const char*)â: >AS_UTL_fileIO.C:263:35: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result >AS_UTL_fileIO.C:264:43: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result >AS_UTL_qsort_mt.C: In function âvoid qsort_mt(void*, size_t, size_t, int (*)(const void*, const void*), int, int)â: >AS_UTL_qsort_mt.C:153:11: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_fasta.o AS_UTL_fasta.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_UID.o AS_UTL_UID.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_reverseComplement.o AS_UTL_reverseComplement.C >############################## AS_UID ############################## >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/uidclient.o uidclient.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/uidserver.o uidserver.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/SYS_UIDclient_LOCAL.o SYS_UIDclient_LOCAL.C >uidserver.C:182:2: warning: #warning PRUNING DOES NOT SEEM TO WORK >uidserver_common.h: In function âint32 writeDatabase()â: >uidserver_common.h:115:40: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >uidserver_common.h: In function âint32 readDatabase()â: >uidserver_common.h:143:39: warning: ignoring return value of âsize_t fread(void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >SYS_UIDclient_LOCAL.C: In function âuint64 getGUIDBlock(int)â: >SYS_UIDclient_LOCAL.C:61:37: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result >############################## AS_MSG ############################## >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_MSG_pmesg.o AS_MSG_pmesg.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_MSG_pmesg1.o AS_MSG_pmesg1.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_MSG_pmesg2.o AS_MSG_pmesg2.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/remove_fragment.o remove_fragment.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ExtractMessages.o ExtractMessages.C >############################## AS_PER ############################## >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_genericStore.o AS_PER_genericStore.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkLibrary.o AS_PER_gkLibrary.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore.o AS_PER_gkStore.C >AS_PER_genericStore.C: In function âStoreStruct* openStore(const char*, const char*)â: >AS_PER_genericStore.C:64:78: warning: too few arguments for format >AS_PER_genericStore.C: In function âStoreStruct* convertStoreToPartialMemoryStore(StoreStruct*, int64, int64)â: >AS_PER_genericStore.C:588:149: warning: format â%dâ expects type âintâ, but argument 3 has type âint64â >AS_PER_genericStore.C:588:149: warning: format â%dâ expects type âintâ, but argument 4 has type âint64â >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_IID.o AS_PER_gkStore_IID.C >AS_PER_gkLibrary.C: In member function âvoid gkLibrary::gkLibrary_decodeFeatures(LibraryMesg*)â: >AS_PER_gkLibrary.C:63:22: warning: comparison between signed and unsigned integer expressions >AS_PER_gkLibrary.C: In member function âvoid gkLibrary::gkLibrary_encodeFeatures(LibraryMesg*)â: >AS_PER_gkLibrary.C:157:45: warning: format â%dâ expects type âintâ, but argument 3 has type âlong long unsigned intâ >AS_PER_gkLibrary.C:165:39: warning: format â%dâ expects type âintâ, but argument 3 has type âlong long unsigned intâ >AS_PER_gkLibrary.C:174:53: warning: format â%dâ expects type âintâ, but argument 3 has type âlong long unsigned intâ >AS_PER_gkLibrary.C:183:50: warning: format â%dâ expects type âintâ, but argument 3 has type âlong long unsigned intâ >AS_PER_gkLibrary.C:191:39: warning: format â%dâ expects type âintâ, but argument 3 has type âlong long unsigned intâ >AS_PER_gkLibrary.C:199:46: warning: format â%dâ expects type âintâ, but argument 3 has type âlong long unsigned intâ >AS_PER_gkLibrary.C:207:44: warning: format â%dâ expects type âintâ, but argument 3 has type âlong long unsigned intâ >AS_PER_gkLibrary.C:216:46: warning: format â%dâ expects type âintâ, but argument 3 has type âlong long unsigned intâ >AS_PER_gkStore.C: In member function âvoid gkStore::gkStore_open(int, int)â: >AS_PER_gkStore.C:136:50: warning: format â%dâ expects type âintâ, but argument 3 has type âuint64â >AS_PER_gkStore_IID.C: In member function âvoid gkStore::gkStore_addIIDtoTypeMap(AS_IID, uint32, uint32)â: >AS_PER_gkStore_IID.C:109:28: warning: comparison between signed and unsigned integer expressions >AS_PER_gkStore_IID.C:116:28: warning: comparison between signed and unsigned integer expressions >AS_PER_gkStore_IID.C:123:28: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_PLC.o AS_PER_gkStore_PLC.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_UID.o AS_PER_gkStore_UID.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_clearRange.o AS_PER_gkStore_clearRange.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_fragments.o AS_PER_gkStore_fragments.C >AS_PER_gkStore_UID.C: In member function âvoid gkStore::gkStore_loadIIDtoUID()â: >AS_PER_gkStore_UID.C:93:41: warning: missing braces around initializer for âHeapIterator_ASâ >AS_PER_gkStore_UID.C: In member function âvoid gkStore::gkStore_loadSTRtoUID()â: >AS_PER_gkStore_UID.C:201:37: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_load.o AS_PER_gkStore_load.C >AS_PER_gkStore_load.C: In member function âvoid gkStore::gkStore_load(AS_IID, AS_IID, int)â: >AS_PER_gkStore_load.C:76:18: warning: comparison between signed and unsigned integer expressions >AS_PER_gkStore_load.C:79:19: warning: comparison between signed and unsigned integer expressions >AS_PER_gkStore_load.C:98:18: warning: comparison between signed and unsigned integer expressions >AS_PER_gkStore_load.C:101:19: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_partition.o AS_PER_gkStore_partition.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStream.o AS_PER_gkStream.C >AS_PER_gkStore_partition.C: In member function âvoid gkStore::gkStore_buildPartitions(short int*, uint32)â: >AS_PER_gkStore_partition.C:131:51: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_encodeSequenceQuality.o AS_PER_encodeSequenceQuality.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_asmStore.o AS_PER_asmStore.C >############################## AS_GKP ############################## >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_GKP_main.o AS_GKP_main.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_GKP_bench.o AS_GKP_bench.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_GKP_buildPartition.o AS_GKP_buildPartition.C >AS_GKP_main.C: In function âchar* constructIIDdump(char*, char*, uint32, uint32, uint32, double, uint64)â: >AS_GKP_main.C:356:18: warning: comparison between signed and unsigned integer expressions >AS_GKP_main.C:363:18: warning: comparison between signed and unsigned integer expressions >AS_GKP_main.C: In function âint main(int, char**)â: >AS_GKP_main.C:651:98: warning: format â%lldâ expects type âlong long intâ, but argument 3 has type âint32â >AS_GKP_main.C: In function âchar* constructIIDdumpFromIDFile(char*, char*, char*, char*)â: >AS_GKP_main.C:215:22: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >AS_GKP_main.C:222:24: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >AS_GKP_main.C:238:22: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >AS_GKP_main.C:251:24: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_GKP_checkLibrary.o AS_GKP_checkLibrary.C >AS_GKP_bench.C: In function âvoid printrusage(char*, double)â: >AS_GKP_bench.C:62:27: warning: missing braces around initializer for âchar [65]â >AS_GKP_bench.C:63:27: warning: missing braces around initializer for âtimevalâ >AS_GKP_bench.C: In function âvoid addRandomFrags(char*, uint32)â: >AS_GKP_bench.C:118:15: warning: comparison between signed and unsigned integer expressions >AS_GKP_bench.C: In function âvoid updateRandomMates(char*, uint32)â: >AS_GKP_bench.C:170:15: warning: comparison between signed and unsigned integer expressions >AS_GKP_bench.C:178:34: warning: comparison between signed and unsigned integer expressions >AS_GKP_bench.C: In function âvoid readRandomFragments(char*, uint32)â: >AS_GKP_bench.C:212:15: warning: comparison between signed and unsigned integer expressions >AS_GKP_buildPartition.C: In function âint Build_Partition(char*, char*, int32)â: >AS_GKP_buildPartition.C:61:15: warning: comparison between signed and unsigned integer expressions >AS_GKP_buildPartition.C:71:1: warning: control reaches end of non-void function >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_GKP_checkFrag.o AS_GKP_checkFrag.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_GKP_checkLink.o AS_GKP_checkLink.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_GKP_checkPlace.o AS_GKP_checkPlace.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_GKP_dump.o AS_GKP_dump.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_GKP_edit.o AS_GKP_edit.C >AS_GKP_dump.C: In function âvoid dumpGateKeeperLibraries(char*, AS_IID, AS_IID, char*, int, int)â: >AS_GKP_dump.C:173:40: warning: comparison between signed and unsigned integer expressions >AS_GKP_dump.C:179:21: warning: comparison between signed and unsigned integer expressions >AS_GKP_dump.C: In function âvoid dumpGateKeeperFragments(char*, AS_IID, AS_IID, char*, int, int, int, int)â: >AS_GKP_dump.C:228:40: warning: comparison between signed and unsigned integer expressions >AS_GKP_dump.C: In function âvoid dumpGateKeeperAsFasta(char*, AS_IID, AS_IID, char*, int, int, int, int)â: >AS_GKP_dump.C:329:40: warning: comparison between signed and unsigned integer expressions >AS_GKP_dump.C:364:27: warning: comparison between signed and unsigned integer expressions >AS_GKP_dump.C: In function âvoid dumpGateKeeperAsFRG(char*, int, AS_IID, AS_IID, char*, int, int, int)â: >AS_GKP_dump.C:431:40: warning: comparison between signed and unsigned integer expressions >AS_GKP_dump.C:436:23: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_GKP_errors.o AS_GKP_errors.C >AS_GKP_dump.C: In function âvoid dumpGateKeeperAsNewbler(char*, char*, AS_IID, AS_IID, char*, int, int)â: >AS_GKP_dump.C:713:40: warning: comparison between signed and unsigned integer expressions >AS_GKP_dump.C:718:23: warning: comparison between signed and unsigned integer expressions >AS_GKP_dump.C: In function âvoid dumpGateKeeperAsFastQ(char*, char*, AS_IID, AS_IID, char*, int, int)â: >AS_GKP_dump.C:876:40: warning: comparison between signed and unsigned integer expressions >AS_GKP_dump.C:881:23: warning: comparison between signed and unsigned integer expressions >AS_GKP_dump.C: In function âint dumpGateKeeperIsFeatureSet(char*, AS_IID, char*)â: >AS_GKP_dump.C:1112:61: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_GKP_illumina.o AS_GKP_illumina.C >AS_GKP_edit.C: In function âvoid editStore(char*, char*, int)â: >AS_GKP_edit.C:348:51: warning: comparison between signed and unsigned integer expressions >AS_GKP_edit.C:449:51: warning: comparison between signed and unsigned integer expressions >AS_GKP_edit.C:273:20: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >AS_GKP_edit.C:655:22: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >AS_GKP_edit.C: In function âvoid updateVectorClear(char*, char*)â: >AS_GKP_edit.C:57:22: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >AS_GKP_edit.C:112:24: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >AS_GKP_illumina.C: In function âuint64 readSeq(FILE*, char*, ilFragment*, char, uint32, uint32)â: >AS_GKP_illumina.C:298:45: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >AS_GKP_illumina.C:299:45: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >AS_GKP_illumina.C:300:45: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >AS_GKP_illumina.C:301:45: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >AS_GKP_illumina.C: In function âuint64 readQSeq(FILE*, char*, ilFragment*, char, uint32, uint32)â: >AS_GKP_illumina.C:253:45: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/sffToCA.o sffToCA.C >sffToCA.C: In function âvoid readsff_manifest(FILE*, sffHeader*, sffManifest*)â: >sffToCA.C:291:31: warning: comparison between signed and unsigned integer expressions >sffToCA.C: In function âvoid readsff_read(FILE*, sffHeader*, sffRead*)â: >sffToCA.C:427:18: warning: comparison between signed and unsigned integer expressions >sffToCA.C: In function âint processRead(sffHeader*, sffRead*, gkFragment*)â: >sffToCA.C:705:50: warning: comparison between signed and unsigned integer expressions >sffToCA.C:706:50: warning: comparison between signed and unsigned integer expressions >sffToCA.C: In function âint loadSFF(char*)â: >sffToCA.C:806:21: warning: comparison between signed and unsigned integer expressions >sffToCA.C: In function âint processMate(gkFragment*, gkFragment*, gkFragment*, char**, int*, int)â: >sffToCA.C:1278:37: warning: comparison between signed and unsigned integer expressions >sffToCA.C:1280:40: warning: comparison between signed and unsigned integer expressions >sffToCA.C:1281:40: warning: comparison between signed and unsigned integer expressions >sffToCA.C:1417:35: warning: comparison between signed and unsigned integer expressions >sffToCA.C:1422:37: warning: comparison between signed and unsigned integer expressions >sffToCA.C:1423:37: warning: comparison between signed and unsigned integer expressions >sffToCA.C:1441:7: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/fastqToCA.o fastqToCA.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/fastqSample.o fastqSample.C >fastqSample.C: In function âint main(int, char**)â: >fastqSample.C:169:63: warning: format â%lluâ expects type âlong long unsigned intâ, but argument 3 has type âuint32â >fastqSample.C:170:63: warning: format â%lluâ expects type âlong long unsigned intâ, but argument 3 has type âuint32â >fastqSample.C:182:11: warning: comparison between signed and unsigned integer expressions >fastqSample.C: In member function âvoid aRead::read(FILE*)â: >fastqSample.C:39:22: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >fastqSample.C:40:22: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >fastqSample.C:41:22: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >fastqSample.C:42:22: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >############################## AS_OBT ############################## >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/chimera.o chimera.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/consolidate.o consolidate.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/deduplicate.o deduplicate.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/initialTrim.o initialTrim.C >chimera.C: In function âvoid process(AS_IID, const clear_t*, gkStore*, bool, const overlapList*)â: >chimera.C:645:24: warning: large integer implicitly truncated to unsigned type >chimera.C:661:26: warning: large integer implicitly truncated to unsigned type >chimera.C:680:26: warning: large integer implicitly truncated to unsigned type >chimera.C:1039:68: warning: comparison between signed and unsigned integer expressions >chimera.C:1049:40: warning: comparison between signed and unsigned integer expressions >chimera.C:1053:69: warning: comparison between signed and unsigned integer expressions >chimera.C:1068:68: warning: comparison between signed and unsigned integer expressions >chimera.C:1073:69: warning: comparison between signed and unsigned integer expressions >consolidate.C: In function âvoid consolidate(OVSoverlap*, int32, obtConsolidate_t&)â: >consolidate.C:114:22: warning: comparison between signed and unsigned integer expressions >consolidate.C:126:19: warning: comparison between signed and unsigned integer expressions >consolidate.C:149:22: warning: comparison between signed and unsigned integer expressions >consolidate.C:157:19: warning: comparison between signed and unsigned integer expressions >deduplicate.C: In function âvoid readOverlapsAndProcessFragments(gkStore*, OverlapStore*, OverlapStore*, uint32, fragT*)â: >deduplicate.C:138:52: warning: comparison between signed and unsigned integer expressions >deduplicate.C: In function âvoid processMatedFragments(gkStore*, fragT*)â: >deduplicate.C:259:56: warning: comparison between signed and unsigned integer expressions >deduplicate.C:273:20: warning: comparison between signed and unsigned integer expressions >deduplicate.C: In function âvoid deleteFragments(gkStore*, fragT*)â: >deduplicate.C:311:56: warning: comparison between signed and unsigned integer expressions >deduplicate.C: In function âint main(int, char**)â: >deduplicate.C:326:50: warning: operation on âerrorLimitâ may be undefined >deduplicate.C:390:52: warning: comparison between signed and unsigned integer expressions >initialTrim.C: In function âint main(int, char**)â: >initialTrim.C:110:61: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/merge-trimming.o merge-trimming.C >merge-trimming.C: In function âmode5* findModeOfFivePrimeMode(gkStore*, char*)â: >merge-trimming.C:102:52: warning: comparison between signed and unsigned integer expressions >merge-trimming.C: In function âint main(int, char**)â: >merge-trimming.C:570:47: warning: comparison between signed and unsigned integer expressions >merge-trimming.C:608:64: warning: format â%lluâ expects type âlong long unsigned intâ, but argument 4 has type âuint32â >merge-trimming.C:616:64: warning: format â%lluâ expects type âlong long unsigned intâ, but argument 4 has type âuint32â >merge-trimming.C:624:64: warning: format â%lluâ expects type âlong long unsigned intâ, but argument 4 has type âuint32â >merge-trimming.C: In function âbool readLine(FILE*)â: >merge-trimming.C:38:26: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/overlapMask.o overlapMask.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/trim.o trim.C >overlapMask.C: In function âint main(int, char**)â: >overlapMask.C:104:52: warning: comparison between signed and unsigned integer expressions >overlapMask.C:142:7: warning: comparison between signed and unsigned integer expressions >overlapMask.C:171:56: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/readOverlap.o readOverlap.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/removeMateOverlap.o removeMateOverlap.C >readOverlap.C: In function âOVSoverlap* readOverlap(OverlapStore*, OverlapStore*)â: >readOverlap.C:67:1: warning: control reaches end of non-void function >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/util++.o util++.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OBT_acceptableOverlap.o AS_OBT_acceptableOverlap.C >removeMateOverlap.C: In function âint main(int, char**)â: >removeMateOverlap.C:155:63: warning: format â%dâ expects type âintâ, but argument 5 has type âlong long intâ >removeMateOverlap.C:155:63: warning: format â%dâ expects type âintâ, but argument 6 has type âlong long intâ >removeMateOverlap.C:162:61: warning: comparison between signed and unsigned integer expressions >############################## AS_MER ############################## >g++ -pthread -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/include -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/meryl.o meryl.C >g++ -pthread -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/include -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/mercy.o mercy.C >g++ -pthread -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/include -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/mercy-regions.o mercy-regions.C >mercy.C: In function âvoid compare(merylStreamReader*, merylStreamReader*, kMer&, u32bit, u32bit (*)[6])â: >mercy.C:136:12: warning: suggest explicit braces to avoid ambiguous âelseâ >mercy.C:155:10: warning: suggest explicit braces to avoid ambiguous âelseâ >mercy.C:174:8: warning: suggest explicit braces to avoid ambiguous âelseâ >g++ -pthread -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/include -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/overmerry.o overmerry.C >mercy-regions.C: In function âint main(int, char**)â: >mercy-regions.C:983:79: warning: format â%uâ expects type âunsigned intâ, but argument 3 has type âintervalNumberâ >mercy-regions.C:983:79: warning: format â%uâ expects type âunsigned intâ, but argument 4 has type âintervalNumberâ >mercy-regions.C:983:79: warning: format â%uâ expects type âunsigned intâ, but argument 5 has type âintervalNumberâ >mercy-regions.C:983:79: warning: format â%uâ expects type âunsigned intâ, but argument 6 has type âintervalNumberâ >mercy-regions.C:986:87: warning: format â%uâ expects type âunsigned intâ, but argument 3 has type âintervalNumberâ >mercy-regions.C:986:87: warning: format â%uâ expects type âunsigned intâ, but argument 4 has type âintervalNumberâ >mercy-regions.C:986:87: warning: format â%uâ expects type âunsigned intâ, but argument 5 has type âintervalNumberâ >mercy-regions.C:986:87: warning: format â%uâ expects type âunsigned intâ, but argument 6 has type âintervalNumberâ >mercy-regions.C:1010:79: warning: format â%uâ expects type âunsigned intâ, but argument 3 has type âintervalNumberâ >mercy-regions.C:1010:79: warning: format â%uâ expects type âunsigned intâ, but argument 4 has type âintervalNumberâ >mercy-regions.C:1010:79: warning: format â%uâ expects type âunsigned intâ, but argument 5 has type âintervalNumberâ >mercy-regions.C:1010:79: warning: format â%uâ expects type âunsigned intâ, but argument 6 has type âintervalNumberâ >mercy-regions.C:1013:87: warning: format â%uâ expects type âunsigned intâ, but argument 3 has type âintervalNumberâ >mercy-regions.C:1013:87: warning: format â%uâ expects type âunsigned intâ, but argument 4 has type âintervalNumberâ >mercy-regions.C:1013:87: warning: format â%uâ expects type âunsigned intâ, but argument 5 has type âintervalNumberâ >mercy-regions.C:1013:87: warning: format â%uâ expects type âunsigned intâ, but argument 6 has type âintervalNumberâ >mercy-regions.C:1022:54: warning: format â%uâ expects type âunsigned intâ, but argument 4 has type âintervalNumberâ >mercy-regions.C:1022:54: warning: format â%uâ expects type âunsigned intâ, but argument 5 has type âintervalNumberâ >mercy-regions.C: In function âvoid readBadMers(char*, std::map<long unsigned int, intervalList*>&)â: >mercy-regions.C:838:23: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >mercy-regions.C:857:25: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >mercy-regions.C: In function âvoid readVariation(char*, std::map<long unsigned int, intervalList*>&)â: >mercy-regions.C:803:30: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >mercy-regions.C:817:32: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >mercy-regions.C: In function âvoid readDepth(char*, std::map<long unsigned int, intervalDepth*>&)â: >mercy-regions.C:755:23: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >mercy-regions.C:772:25: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >g++ -pthread -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/include -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/merTrim.o merTrim.C >merTrim.C:214:2: warning: #warning not really replacing N with random ACGT >overmerry.C: In function âu32bit ovmWorker_analyzeReadForThreshold(ovmGlobalData*, ovmThreadData*, ovmComputation*, merStream*, uint32*)â: >overmerry.C:506:63: warning: format â%uâ expects type âunsigned intâ, but argument 4 has type âu32bitâ >overmerry.C:506:63: warning: format â%uâ expects type âunsigned intâ, but argument 5 has type âu32bitâ >overmerry.C:506:63: warning: format â%uâ expects type âunsigned intâ, but argument 6 has type âu32bitâ >overmerry.C:506:63: warning: format â%uâ expects type âunsigned intâ, but argument 7 has type âu32bitâ >overmerry.C:506:63: warning: format â%uâ expects type âunsigned intâ, but argument 8 has type âu32bitâ >overmerry.C:506:63: warning: format â%uâ expects type âunsigned intâ, but argument 9 has type âu32bitâ >overmerry.C:506:63: warning: format â%uâ expects type âunsigned intâ, but argument 10 has type âu32bitâ >In file included from merTrim.C:38:0: >/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/include/existDB.H: In member function âvoid existDB::insertMer(u64bit, u64bit, u64bit, u64bit*)â: >/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/include/existDB.H:83:8: warning: suggest explicit braces to avoid ambiguous âelseâ >g++ -pthread -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/include -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/estimate-mer-threshold.o estimate-mer-threshold.C >estimate-mer-threshold.C: In function âint main(int, char**)â: >estimate-mer-threshold.C:103:70: warning: format â%dâ expects type âintâ, but argument 5 has type âu64bitâ >estimate-mer-threshold.C:106:89: warning: format â%dâ expects type âintâ, but argument 4 has type âu64bitâ >estimate-mer-threshold.C:106:89: warning: format â%dâ expects type âintâ, but argument 5 has type âu64bitâ >estimate-mer-threshold.C:110:89: warning: format â%dâ expects type âintâ, but argument 4 has type âu64bitâ >estimate-mer-threshold.C:110:89: warning: format â%dâ expects type âintâ, but argument 5 has type âu64bitâ >estimate-mer-threshold.C:114:87: warning: format â%dâ expects type âintâ, but argument 4 has type âu64bitâ >estimate-mer-threshold.C:114:87: warning: format â%dâ expects type âintâ, but argument 5 has type âu64bitâ >estimate-mer-threshold.C:139:84: warning: format â%luâ expects type âlong unsigned intâ, but argument 3 has type âuint32â >g++ -pthread -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/include -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_MER_gkpStore_to_FastABase.o AS_MER_gkpStore_to_FastABase.C >g++ -pthread -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/include -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_MER_gkpStoreChain.o AS_MER_gkpStoreChain.C >############################## AS_OVL ############################## >g++ -pthread -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVL_overlap.o AS_OVL_overlap.C >g++ -pthread -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVL_driver.o AS_OVL_driver.C >g++ -pthread -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVL_overlap_ca.o AS_OVL_overlap_ca.C >g++ -pthread -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVL_driver_ca.o AS_OVL_driver_ca.C >In file included from AS_OVL_overlap.C:70:0: >AS_OVL_overlap_common.h: In function âint main(int, char**)â: >AS_OVL_overlap_common.h:779:28: warning: comparison between signed and unsigned integer expressions >AS_OVL_overlap_common.h: In function âString_Ref_t Add_Extra_Hash_String(const char*)â: >AS_OVL_overlap_common.h:1074:15: warning: comparison between signed and unsigned integer expressions >AS_OVL_overlap_common.h: In function âvoid Add_Ref(String_Ref_t, int, Work_Area_t*)â: >AS_OVL_overlap_common.h:1273:64: warning: comparison between signed and unsigned integer expressions >AS_OVL_overlap_common.h: In function âint Build_Hash_Index(gkStream*, int32, gkFragment*)â: >AS_OVL_overlap_common.h:1491:24: warning: comparison between signed and unsigned integer expressions >AS_OVL_overlap_common.h:1494:29: warning: comparison between signed and unsigned integer expressions >In file included from AS_OVL_driver.C:45:0: >AS_OVL_driver_common.h: In function âint OverlapDriver(int, char**)â: >AS_OVL_driver_common.h:151:90: warning: format â%dâ expects type âintâ, but argument 3 has type âint64â >AS_OVL_driver_common.h:151:90: warning: format â%dâ expects type âintâ, but argument 4 has type âint64â >AS_OVL_driver_common.h:178:45: warning: comparison between signed and unsigned integer expressions >AS_OVL_driver_common.h:180:61: warning: comparison between signed and unsigned integer expressions >AS_OVL_driver_common.h: In function âint Choose_Hi_IID_Sub(uint32*, int, int)â: >AS_OVL_driver_common.h:299:37: warning: comparison between signed and unsigned integer expressions >AS_OVL_overlap_common.h: In function âvoid Put_String_In_Hash(int)â: >AS_OVL_overlap_common.h:4135:13: warning: comparison between signed and unsigned integer expressions >AS_OVL_overlap_common.h: In function âint Read_Next_Frag(char*, char*, gkStream*, gkFragment*, Screen_Info_t*, uint32*)â: >AS_OVL_overlap_common.h:4258:58: warning: format â%luâ expects type âlong unsigned intâ, but argument 4 has type âsize_tâ >In file included from AS_OVL_overlap_ca.C:73:0: >AS_OVL_overlap_common.h: In function âint main(int, char**)â: >AS_OVL_overlap_common.h:641:33: warning: comparison between signed and unsigned integer expressions >AS_OVL_overlap_common.h:779:28: warning: comparison between signed and unsigned integer expressions >AS_OVL_overlap_common.h: In function âString_Ref_t Add_Extra_Hash_String(const char*)â: >AS_OVL_overlap_common.h:1074:15: warning: comparison between signed and unsigned integer expressions >AS_OVL_overlap_common.h: In function âvoid Add_Ref(String_Ref_t, int, Work_Area_t*)â: >AS_OVL_overlap_common.h:1273:64: warning: comparison between signed and unsigned integer expressions >AS_OVL_overlap_common.h: In function âint Build_Hash_Index(gkStream*, int32, gkFragment*)â: >AS_OVL_overlap_common.h:1491:24: warning: comparison between signed and unsigned integer expressions >AS_OVL_overlap_common.h:1494:29: warning: comparison between signed and unsigned integer expressions >In file included from AS_OVL_driver_ca.C:50:0: >AS_OVL_driver_common.h: In function âint OverlapDriver(int, char**)â: >AS_OVL_driver_common.h:151:90: warning: format â%dâ expects type âintâ, but argument 3 has type âint64â >AS_OVL_driver_common.h:151:90: warning: format â%dâ expects type âintâ, but argument 4 has type âint64â >AS_OVL_driver_common.h:178:45: warning: comparison between signed and unsigned integer expressions >AS_OVL_driver_common.h:180:61: warning: comparison between signed and unsigned integer expressions >AS_OVL_driver_common.h: In function âint Choose_Hi_IID_Sub(uint32*, int, int)â: >AS_OVL_driver_common.h:299:37: warning: comparison between signed and unsigned integer expressions >AS_OVL_overlap_common.h: In function âvoid Put_String_In_Hash(int)â: >AS_OVL_overlap_common.h:4135:13: warning: comparison between signed and unsigned integer expressions >AS_OVL_overlap_common.h: In function âString_Ref_t Add_Extra_Hash_String(const char*)â: >AS_OVL_overlap_common.h:1073:35: warning: ârefâ is used uninitialized in this function >AS_OVL_overlap_common.h: In function âint Read_Next_Frag(char*, char*, gkStream*, gkFragment*, Screen_Info_t*, uint32*)â: >AS_OVL_overlap_common.h:4258:58: warning: format â%luâ expects type âlong unsigned intâ, but argument 4 has type âsize_tâ >AS_OVL_overlap_common.h: In function âString_Ref_t Add_Extra_Hash_String(const char*)â: >AS_OVL_overlap_common.h:1073:35: warning: ârefâ is used uninitialized in this function >g++ -pthread -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVL_delcher.o AS_OVL_delcher.C >g++ -pthread -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/OlapFromSeedsOVL.o OlapFromSeedsOVL.C >AS_OVL_overlap_common.h: In function âString_Ref_t Hash_Find(uint64, int64, char*, int64*, int*)â: >AS_OVL_overlap_common.h:2232:18: warning: âH_Refâ may be used uninitialized in this function >g++ -pthread -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/FragCorrectOVL.o FragCorrectOVL.C >AS_OVL_overlap_common.h: In function âString_Ref_t Hash_Find(uint64, int64, char*, int64*, int*)â: >AS_OVL_overlap_common.h:2232:18: warning: âH_Refâ may be used uninitialized in this function >OlapFromSeedsOVL.C: In function âvoid Extract_Needed_Frags(gkStore*, int32, int32, Frag_List_t*, int*)â: >OlapFromSeedsOVL.C:2505:53: warning: comparison between signed and unsigned integer expressions >OlapFromSeedsOVL.C:2544:33: warning: comparison between signed and unsigned integer expressions >OlapFromSeedsOVL.C:2580:52: warning: comparison between signed and unsigned integer expressions >OlapFromSeedsOVL.C: In function âvoid Get_Seeds_From_Store(char*, int32, int32, Olap_Info_t**, int*)â: >OlapFromSeedsOVL.C:2682:38: warning: format â%2uâ expects type âunsigned intâ, but argument 4 has type âlong long unsigned intâ >OlapFromSeedsOVL.C:2682:38: warning: format â%5uâ expects type âunsigned intâ, but argument 7 has type âlong long unsigned intâ >OlapFromSeedsOVL.C:2682:38: warning: format â%5uâ expects type âunsigned intâ, but argument 8 has type âlong long unsigned intâ >OlapFromSeedsOVL.C:2682:38: warning: format â%4uâ expects type âunsigned intâ, but argument 9 has type âlong long unsigned intâ >OlapFromSeedsOVL.C:2682:38: warning: format â%4uâ expects type âunsigned intâ, but argument 10 has type âlong long unsigned intâ >OlapFromSeedsOVL.C:2682:38: warning: format â%2uâ expects type âunsigned intâ, but argument 11 has type âlong long unsigned intâ >OlapFromSeedsOVL.C: In function âvoid Output_Olap(Olap_Info_t*, int, int, int, int, int, int, int)â: >OlapFromSeedsOVL.C:3551:11: warning: enumeration value âOVL_STOREâ not handled in switch >OlapFromSeedsOVL.C: In function âvoid Output_Olap_From_Diff(const Sequence_Diff_t*, int)â: >OlapFromSeedsOVL.C:3646:11: warning: enumeration value âOVL_STOREâ not handled in switch >OlapFromSeedsOVL.C: In function âvoid Set_Signature(Difference_Signature_t*, short int*, int, const Sequence_Diff_t*, const char*, int, int)â: >OlapFromSeedsOVL.C:5201:81: warning: suggest parentheses around â&&â within â||â >OlapFromSeedsOVL.C:5223:81: warning: suggest parentheses around â&&â within â||â >OlapFromSeedsOVL.C: In function âvoid Stream_Old_Frags()â: >OlapFromSeedsOVL.C:5583:42: warning: comparison between signed and unsigned integer expressions >OlapFromSeedsOVL.C:5607:33: warning: comparison between signed and unsigned integer expressions >OlapFromSeedsOVL.C:5614:48: warning: comparison between signed and unsigned integer expressions >OlapFromSeedsOVL.C: In function âvoid Tidy_Up()â: >OlapFromSeedsOVL.C:5863:11: warning: enumeration value âOVL_STOREâ not handled in switch >FragCorrectOVL.C: In function âvoid Extract_Needed_Frags(gkStore*, int32, int32, Frag_List_t*, int*)â: >FragCorrectOVL.C:992:32: warning: comparison between signed and unsigned integer expressions >FragCorrectOVL.C:1026:35: warning: comparison between signed and unsigned integer expressions >FragCorrectOVL.C:1059:52: warning: comparison between signed and unsigned integer expressions >OlapFromSeedsOVL.C: In function âvoid Output_Correction_Header(FILE*, int)â: >OlapFromSeedsOVL.C:3144:55: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >FragCorrectOVL.C: In function âvoid Stream_Old_Frags()â: >FragCorrectOVL.C:2109:42: warning: comparison between signed and unsigned integer expressions >FragCorrectOVL.C:2126:35: warning: comparison between signed and unsigned integer expressions >FragCorrectOVL.C:2133:48: warning: comparison between signed and unsigned integer expressions >OlapFromSeedsOVL.C: In function âvoid Determine_Homopoly_Corrections(FILE*, int, New_Vote_t*, char*, char*, int)â: >OlapFromSeedsOVL.C:1773:61: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >OlapFromSeedsOVL.C: In function âvoid Determine_Standard_Corrections(FILE*, int, New_Vote_t*, char*, char*, int)â: >OlapFromSeedsOVL.C:1926:61: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >FragCorrectOVL.C: In function âvoid Output_Corrections(FILE*)â: >FragCorrectOVL.C:1308:58: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >FragCorrectOVL.C:1326:63: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >FragCorrectOVL.C:1400:71: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >FragCorrectOVL.C:1451:71: warning: ignoring return value of âsize_t fwrite(const void*, size_t, size_t, FILE*)â, declared with attribute warn_unused_result >g++ -pthread -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ShowCorrectsOVL.o ShowCorrectsOVL.C >ShowCorrectsOVL.C: In function âint main(int, char**)â: >ShowCorrectsOVL.C:96:56: warning: format â%8uâ expects type âunsigned intâ, but argument 2 has type âlong long unsigned intâ >ShowCorrectsOVL.C:99:45: warning: format â%4uâ expects type âunsigned intâ, but argument 2 has type âlong long unsigned intâ >g++ -pthread -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CorrectOlapsOVL.o CorrectOlapsOVL.C >CorrectOlapsOVL.C: In function âvoid Correct_Frags()â: >CorrectOlapsOVL.C:736:23: warning: comparison between signed and unsigned integer expressions >CorrectOlapsOVL.C:738:28: warning: comparison between signed and unsigned integer expressions >CorrectOlapsOVL.C: In function âvoid Dump_Erate_File(char*, int32, int32, Olap_Info_t*, uint64)â: >CorrectOlapsOVL.C:916:22: warning: comparison between signed and unsigned integer expressions >CorrectOlapsOVL.C: In function âvoid Read_Frags()â: >CorrectOlapsOVL.C:2045:35: warning: comparison between signed and unsigned integer expressions >CorrectOlapsOVL.C: In function âvoid Redo_Olaps()â: >CorrectOlapsOVL.C:2181:42: warning: comparison between signed and unsigned integer expressions >CorrectOlapsOVL.C:2195:35: warning: comparison between signed and unsigned integer expressions >CorrectOlapsOVL.C:2236:48: warning: comparison between signed and unsigned integer expressions >g++ -pthread -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CatCorrectsOVL.o CatCorrectsOVL.C >g++ -pthread -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CatEratesOVL.o CatEratesOVL.C >g++ -pthread -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/SharedOVL.o SharedOVL.C >SharedOVL.C: In function âint Fwd_Banded_Homopoly_Prefix_Match(const char*, int, const char*, int, int, int, int, int*, int*, int*, int*, int*, int*, Alignment_Cell_t*, double, int)â: >SharedOVL.C:192:39: warning: suggest parentheses around â&&â within â||â >SharedOVL.C:287:67: warning: suggest parentheses around â&&â within â||â >SharedOVL.C: In function âint Rev_Homopoly_Match_Start(const char*, int, const char*, int, int, int*, int*, int*, int*, Homopoly_Match_Entry_t**, double, int)â: >SharedOVL.C:1260:9: warning: âbest_end_dâ may be used uninitialized in this function >SharedOVL.C:1260:21: warning: âbest_end_eâ may be used uninitialized in this function >SharedOVL.C: In function âvoid Set_Fwd_Banded_Delta(int*, int*, Alignment_Cell_t*, int, int, int*, int*)â: >SharedOVL.C:1784:28: warning: âsignâ may be used uninitialized in this function >SharedOVL.C: In function âint Fwd_Banded_Homopoly_Prefix_Match(const char*, int, const char*, int, int, int, int, int*, int*, int*, int*, int*, int*, Alignment_Cell_t*, double, int)â: >SharedOVL.C:135:19: warning: âbest_colâ may be used uninitialized in this function >SharedOVL.C:135:41: warning: âbest_errorsâ may be used uninitialized in this function >SharedOVL.C: In function âint Fwd_Homopoly_Prefix_Match(const char*, int, const char*, int, int, int*, int*, int*, int*, int*, int*, Homopoly_Match_Entry_t**)â: >SharedOVL.C:404:9: warning: âbest_end_dâ may be used uninitialized in this function >SharedOVL.C:404:21: warning: âbest_end_eâ may be used uninitialized in this function >############################## AS_OVS ############################## >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVS_overlap.o AS_OVS_overlap.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVS_overlapFile.o AS_OVS_overlapFile.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVS_overlapStore.o AS_OVS_overlapStore.C >AS_OVS_overlap.C: In function âint AS_OVS_convertOVLdumpToOVSoverlap(char*, OVSoverlap*)â: >AS_OVS_overlap.C:134:24: warning: comparison between signed and unsigned integer expressions >AS_OVS_overlap.C: In function âint AS_OVS_convertOBTdumpToOVSoverlap(char*, OVSoverlap*)â: >AS_OVS_overlap.C:171:24: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVS_overlapStats.o AS_OVS_overlapStats.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/overlapStore.o overlapStore.C >AS_OVS_overlapStore.C: In function âOverlapStore* AS_OVS_openOverlapStorePrivate(const char*, int, int)â: >AS_OVS_overlapStore.C:133:62: warning: format â%dâ expects type âintâ, but argument 5 has type âuint64â >AS_OVS_overlapStore.C:139:73: warning: format â%dâ expects type âintâ, but argument 5 has type âuint64â >AS_OVS_overlapStore.C:172:27: warning: comparison between signed and unsigned integer expressions >AS_OVS_overlapStore.C: In function âvoid AS_OVS_restoreBackup(OverlapStore*)â: >AS_OVS_overlapStore.C:219:27: warning: comparison between signed and unsigned integer expressions >AS_OVS_overlapStore.C: In function âvoid AS_OVS_closeOverlapStore(OverlapStore*)â: >AS_OVS_overlapStore.C:448:27: warning: comparison between signed and unsigned integer expressions >AS_OVS_overlapStore.C: In function âvoid AS_OVS_writeOverlapToStore(OverlapStore*, OVSoverlap*)â: >AS_OVS_overlapStore.C:624:41: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/overlapStore_build.o overlapStore_build.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/overlapStore_merge.o overlapStore_merge.C >overlapStore.C: In function âint main(int, char**)â: >overlapStore.C:236:73: warning: format â%dâ expects type âintâ, but argument 3 has type âlong intâ >overlapStore.C:146:35: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >overlapStore.C:153:37: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >overlapStore_build.C: In function âvoid writeToDumpFile(OVSoverlap*, BinaryOverlapFile**, uint32, uint64*, uint32, char*)â: >overlapStore_build.C:69:13: warning: comparison between signed and unsigned integer expressions >overlapStore_build.C:79:65: warning: format â%dâ expects type âintâ, but argument 6 has type âlong long unsigned intâ >overlapStore_build.C:79:65: warning: format â%dâ expects type âintâ, but argument 7 has type âlong long unsigned intâ >overlapStore_build.C:79:65: warning: format â%dâ expects type âintâ, but argument 8 has type âlong long unsigned intâ >overlapStore_build.C: In function âvoid buildStore(char*, char*, uint64, uint32, uint32, uint32, char**, Ovl_Skip_Type_t)â: >overlapStore_build.C:202:68: warning: format â%dâ expects type âintâ, but argument 6 has type âlong long unsigned intâ >overlapStore_build.C:202:68: warning: format â%dâ expects type âintâ, but argument 7 has type âlong long unsigned intâ >overlapStore_build.C:202:68: warning: format â%dâ expects type âintâ, but argument 8 has type âlong long unsigned intâ >overlapStore_build.C:295:15: warning: comparison between signed and unsigned integer expressions >overlapStore_build.C:305:15: warning: comparison between signed and unsigned integer expressions >overlapStore_build.C:314:15: warning: comparison between signed and unsigned integer expressions >overlapStore_build.C:328:70: warning: format â%dâ expects type âintâ, but argument 4 has type âtime_tâ >overlapStore_build.C:336:5: warning: comparison between signed and unsigned integer expressions >overlapStore_build.C:337:5: warning: comparison between signed and unsigned integer expressions >overlapStore_build.C:346:70: warning: format â%dâ expects type âintâ, but argument 4 has type âtime_tâ >overlapStore_build.C:349:70: warning: format â%dâ expects type âintâ, but argument 4 has type âtime_tâ >overlapStore_build.C:350:29: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/overlapStore_dump.o overlapStore_dump.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/overlapStore_erates.o overlapStore_erates.C >overlapStore_dump.C: In function âvoid dumpStore(char*, uint32, double, uint32, uint32, uint32, uint32)â: >overlapStore_dump.C:89:45: warning: format â%5dâ expects type âintâ, but argument 6 has type âlong long intâ >overlapStore_dump.C:89:45: warning: format â%5dâ expects type âintâ, but argument 7 has type âlong long intâ >overlapStore_dump.C:89:45: warning: format â%5dâ expects type âintâ, but argument 10 has type âlong long unsigned intâ >overlapStore_dump.C:109:70: warning: format â%4dâ expects type âintâ, but argument 6 has type âlong long unsigned intâ >overlapStore_dump.C:109:70: warning: format â%4dâ expects type âintâ, but argument 7 has type âlong long unsigned intâ >overlapStore_dump.C:109:70: warning: format â%4dâ expects type âintâ, but argument 8 has type âlong long unsigned intâ >overlapStore_dump.C:125:40: warning: format â%4dâ expects type âintâ, but argument 6 has type âlong long unsigned intâ >overlapStore_dump.C:125:40: warning: format â%4dâ expects type âintâ, but argument 7 has type âlong long unsigned intâ >overlapStore_dump.C:125:40: warning: format â%4dâ expects type âintâ, but argument 8 has type âlong long unsigned intâ >overlapStore_dump.C:125:40: warning: format â%4dâ expects type âintâ, but argument 9 has type âlong long unsigned intâ >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/overlapStats.o overlapStats.C >In file included from overlapStats.C:61:0: >AS_UTL_histogram.h:344:2: warning: #warning not remembering the smallest/largest >In file included from overlapStats.C:101:0: >overlapStatsBoringStuff.h:282:2: warning: #warning bogus compute of repeatThreshold >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/convertOverlap.o convertOverlap.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/filterOverlap.o filterOverlap.C >In file included from overlapStats.C:61:0: >AS_UTL_histogram.h: In function âvoid AS_UTL_histogramShow(AS_UTL_histogram*, FILE*, char*)â: >AS_UTL_histogram.h:186:30: warning: missing braces around initializer for âuint64 [3]â >AS_UTL_histogram.h:187:30: warning: missing braces around initializer for âuint64 [3]â >AS_UTL_histogram.h:208:18: warning: comparison between signed and unsigned integer expressions >AS_UTL_histogram.h:241:18: warning: comparison between signed and unsigned integer expressions >AS_UTL_histogram.h:252:15: warning: comparison between signed and unsigned integer expressions >AS_UTL_histogram.h:252:31: warning: comparison between signed and unsigned integer expressions >AS_UTL_histogram.h:253:13: warning: comparison between signed and unsigned integer expressions >AS_UTL_histogram.h:260:13: warning: comparison between signed and unsigned integer expressions >AS_UTL_histogram.h: In function âAS_UTL_histogram3d* AS_UTL_histogram3dAllocate(AS_UTL_histogram3d*, uint32, uint32)â: >AS_UTL_histogram.h:306:31: warning: comparison between signed and unsigned integer expressions >AS_UTL_histogram.h: In function âvoid AS_UTL_histogram3dAdd(AS_UTL_histogram3d*, uint64, uint64)â: >AS_UTL_histogram.h:335:31: warning: comparison between signed and unsigned integer expressions >In file included from overlapStats.C:101:0: >overlapStatsBoringStuff.h: In function âRepeatModel* computeRepeatModels(OverlapStore*, gkStore*)â: >overlapStatsBoringStuff.h:295:66: warning: format â%dâ expects type âintâ, but argument 3 has type âuint64â >overlapStats.C: In function âFragmentEndData* process_FragmentEnds(OVSoverlap*, uint64, gkStore*, RepeatModel*, FragmentEndData*, int)â: >overlapStats.C:146:15: warning: comparison between signed and unsigned integer expressions >overlapStats.C: In function âLibraryOverlapData* process_LibraryRandomness(OVSoverlap*, uint64, gkStore*, RepeatModel*, LibraryOverlapData*)â: >overlapStats.C:287:19: warning: comparison between signed and unsigned integer expressions >overlapStats.C: In function âvoid finalize_LibraryRandomness(gkStore*, RepeatModel*, LibraryOverlapData*)â: >overlapStats.C:338:164: warning: format â%ldâ expects type âlong intâ, but argument 3 has type âuint64â >overlapStats.C:338:164: warning: format â%ldâ expects type âlong intâ, but argument 4 has type âuint64â >overlapStats.C:339:63: warning: unknown conversion type character ârâ in format >overlapStats.C:358:96: warning: format â%dâ expects type âintâ, but argument 6 has type âuint64â >overlapStats.C: In function âint main(int, char**)â: >overlapStats.C:409:74: warning: too few arguments for format >convertOverlap.C: In function âvoid convertOVLtoASCII()â: >convertOverlap.C:155:66: warning: format â%5dâ expects type âintâ, but argument 6 has type âlong long intâ >convertOverlap.C:155:66: warning: format â%5dâ expects type âintâ, but argument 7 has type âlong long intâ >convertOverlap.C: In function âvoid convertOBTtoASCII()â: >convertOverlap.C:175:61: warning: format â%4dâ expects type âintâ, but argument 6 has type âlong long unsigned intâ >convertOverlap.C:175:61: warning: format â%4dâ expects type âintâ, but argument 7 has type âlong long unsigned intâ >convertOverlap.C:175:61: warning: format â%4dâ expects type âintâ, but argument 8 has type âlong long unsigned intâ >convertOverlap.C: In function âvoid convertMERtoASCII()â: >convertOverlap.C:196:31: warning: format â%dâ expects type âintâ, but argument 7 has type âlong long unsigned intâ >convertOverlap.C:196:31: warning: format â%4dâ expects type âintâ, but argument 8 has type âlong long unsigned intâ >convertOverlap.C:196:31: warning: format â%4dâ expects type âintâ, but argument 9 has type âlong long unsigned intâ >convertOverlap.C:196:31: warning: format â%4dâ expects type âintâ, but argument 10 has type âlong long unsigned intâ >convertOverlap.C:196:31: warning: format â%4dâ expects type âintâ, but argument 11 has type âlong long unsigned intâ >convertOverlap.C: In function âvoid convertOBTtoBinary()â: >convertOverlap.C:84:27: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >convertOverlap.C:88:29: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >convertOverlap.C: In function âvoid convertOVLtoBinary()â: >convertOverlap.C:66:27: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >convertOverlap.C:70:29: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >############################## AS_ALN ############################## >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_ALN_dpaligner.o AS_ALN_dpaligner.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_ALN_qvaligner.o AS_ALN_qvaligner.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_ALN_loverlapper.o AS_ALN_loverlapper.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_ALN_pieceOlap.o AS_ALN_pieceOlap.C >AS_ALN_loverlapper.C: In function âvoid safe_suffix(char**, int*, char*, int)â: >AS_ALN_loverlapper.C:103:3: warning: comparison between signed and unsigned integer expressions >AS_ALN_loverlapper.C: In function âvoid print_piece(Local_Overlap*, int, char*, char*)â: >AS_ALN_loverlapper.C:139:3: warning: comparison between signed and unsigned integer expressions >AS_ALN_loverlapper.C:140:3: warning: comparison between signed and unsigned integer expressions >AS_ALN_loverlapper.C: In function âint* AS_Local_Trace(Local_Overlap*, char*, char*)â: >AS_ALN_loverlapper.C:818:5: warning: comparison between signed and unsigned integer expressions >AS_ALN_loverlapper.C:819:5: warning: comparison between signed and unsigned integer expressions >AS_ALN_loverlapper.C: In function âint _ZL13compressChainP13Local_Overlapi.clone.0(int*, Local_Chain**, int)â: >AS_ALN_loverlapper.C:225:7: warning: âIâ may be used uninitialized in this function >AS_ALN_pieceOlap.C: In function âvoid safe_substr(char**, int*, const char*, int, int)â: >AS_ALN_pieceOlap.C:50:3: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_ALN_forcns.o AS_ALN_forcns.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CA_ALN_local.o CA_ALN_local.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CA_ALN_overlap.o CA_ALN_overlap.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CA_ALN_scafcomp.o CA_ALN_scafcomp.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_ALN_bruteforcedp.o AS_ALN_bruteforcedp.C >AS_ALN_bruteforcedp.C: In function âvoid alignLinker(char*, char*, char*, char*, dpCell (*)[2048], alignLinker_s*, int, int, int, int)â: >AS_ALN_bruteforcedp.C:184:12: warning: assuming signed overflow does not occur when assuming that (X + c) >= X is always true >AS_ALN_bruteforcedp.C:185:12: warning: assuming signed overflow does not occur when assuming that (X + c) >= X is always true >CA_ALN_overlap.C: In function âvoid _ZL25Print_Local_Overlap_PieceP8_IO_FILEPcS1_P13Local_Segment.clone.2(char*, char*, Local_Segment*)â: >CA_ALN_overlap.C:1148:20: warning: array subscript is below array bounds >CA_ALN_overlap.C:1148:20: warning: array subscript is below array bounds >CA_ALN_scafcomp.C: In function âSegment* Align_Scaffold(Segment*, int, int, Scaffold*, Scaffold*, int*, int, int)â: >CA_ALN_scafcomp.C:1455:9: warning: âbegâ may be used uninitialized in this function >CA_ALN_scafcomp.C:1456:9: warning: âendâ may be used uninitialized in this function >############################## AS_CGB ############################## >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_unitigger.o AS_CGB_unitigger.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_FGB_main.o AS_FGB_main.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_FGB_io.o AS_FGB_io.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_histo.o AS_CGB_histo.C >AS_CGB_unitigger.C: In function âvoid output_the_chunks(Tfragment*, Tedge*, TChunkFrag*, TChunkMesg*, float, int, char*, char*, gkStore*)â: >AS_CGB_unitigger.C:80:28: warning: comparison between signed and unsigned integer expressions >AS_CGB_unitigger.C:93:72: warning: format â%lldâ expects type âlong long intâ, but argument 6 has type âuint32â >AS_CGB_unitigger.C:95:31: warning: comparison between signed and unsigned integer expressions >AS_CGB_unitigger.C:142:31: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_fga.o AS_CGB_fga.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_fgb.o AS_CGB_fgb.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_FGB_hanging_fragment.o AS_FGB_hanging_fragment.C >AS_CGB_fgb.C: In function âvoid setup_segments(Tfragment*, Tedge*)â: >AS_CGB_fgb.C:213:3: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_FGB_contained.o AS_FGB_contained.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_traversal.o AS_CGB_traversal.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_walk.o AS_CGB_walk.C >AS_CGB_traversal.C: In function âvoid as_diagq(FILE*, IntFragment_ID*, int, IntFragment_ID, IntFragment_ID)â: >AS_CGB_traversal.C:124:21: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_edgemate.o AS_CGB_edgemate.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_main.o AS_CGB_main.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_cgb.o AS_CGB_cgb.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_classify.o AS_CGB_classify.C >AS_CGB_main.C: In function âint main_cgb(THeapGlobals*, UnitiggerGlobals*, gkStore*)â: >AS_CGB_main.C:404:82: warning: suggest parentheses around â&&â within â||â >AS_CGB_cgb.C: In function âIntEdge_ID find_intrachunk_edge(Tfragment*, Tedge*, IntFragment_ID, int, IntFragment_ID*, int*)â: >AS_CGB_cgb.C:399:16: warning: comparison between signed and unsigned integer expressions >AS_CGB_cgb.C: In function âint count_the_randomly_sampled_fragments_in_a_chunk(Tfragment*, TChunkFrag*, TChunkMesg*, IntChunk_ID, gkStore*)â: >AS_CGB_cgb.C:986:15: warning: comparison between signed and unsigned integer expressions >AS_CGB_cgb.C: In function âfloat compute_the_global_fragment_arrival_rate(int, float, FILE*, int64, Tfragment*, Tedge*, float, TChunkFrag*, TChunkMesg*, gkStore*)â: >AS_CGB_cgb.C:1132:23: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_chimeras.o AS_CGB_chimeras.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_cga.o AS_CGB_cga.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_Bubble.o AS_CGB_Bubble.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_Bubble_Graph.o AS_CGB_Bubble_Graph.C >AS_CGB_Bubble.C: In function âAS_CGB_Bubble_List* _collect_bubbles(BubGraph*, BubVertexSet*, BubVertexSet*, IntFragment_ID*, int)â: >AS_CGB_Bubble.C:114:19: warning: comparison between signed and unsigned integer expressions >AS_CGB_Bubble.C:128:19: warning: comparison between signed and unsigned integer expressions >AS_CGB_Bubble.C: In function âvoid _forward_collect_sets(BubGraph*, BubVertexSet*, IntFragment_ID*, int)â: >AS_CGB_Bubble.C:200:19: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_Bubble_VertexSet.o AS_CGB_Bubble_VertexSet.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_Bubble_dfs.o AS_CGB_Bubble_dfs.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_Bubble_Popper.o AS_CGB_Bubble_Popper.C >AS_CGB_Bubble_Popper.C: In function âvoid BP_reset(BubblePopper*)â: >AS_CGB_Bubble_Popper.C:112:23: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_Bubble_PopperMethods.o AS_CGB_Bubble_PopperMethods.C >AS_CGB_Bubble_PopperMethods.C: In function âvoid BP_transitive_closure(BubblePopper*)â: >AS_CGB_Bubble_PopperMethods.C:151:41: warning: comparison between signed and unsigned integer expressions >AS_CGB_Bubble_PopperMethods.C: In function âint BP_DAG_longest_path(BubblePopper*)â: >AS_CGB_Bubble_PopperMethods.C:225:29: warning: comparison between signed and unsigned integer expressions >AS_CGB_Bubble_PopperMethods.C:232:33: warning: comparison between signed and unsigned integer expressions >############################## AS_BOG ############################## >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/BuildUnitigs.o BuildUnitigs.cc >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_BOG_BestOverlapGraph.o AS_BOG_BestOverlapGraph.cc >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_BOG_ChunkGraph.o AS_BOG_ChunkGraph.cc >In file included from BuildUnitigs.cc:22:0: >AS_BOG_Datatypes.hh:44:2: warning: #warning there is a comparison assuming fragment_end_type FIVE_PRIME < THREE_PRIME >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_BOG_MateChecker.o AS_BOG_MateChecker.cc >In file included from AS_BOG_BestOverlapGraph.cc:24:0: >AS_BOG_Datatypes.hh:44:2: warning: #warning there is a comparison assuming fragment_end_type FIVE_PRIME < THREE_PRIME >In file included from AS_BOG_ChunkGraph.cc:24:0: >AS_BOG_Datatypes.hh:44:2: warning: #warning there is a comparison assuming fragment_end_type FIVE_PRIME < THREE_PRIME >AS_BOG_ChunkGraph.cc:89:5: warning: multi-line comment >In file included from AS_BOG_MateChecker.cc:24:0: >AS_BOG_Datatypes.hh:44:2: warning: #warning there is a comparison assuming fragment_end_type FIVE_PRIME < THREE_PRIME >AS_BOG_MateChecker.cc:155:2: warning: #warning assumes innie mate pairs >AS_BOG_MateChecker.cc:722:2: warning: #warning EMPTIED OUT A UNITIG >In file included from BuildUnitigs.cc:26:0: >AS_BOG_MateChecker.hh: In function âbool operator==(SeqInterval, SeqInterval)â: >AS_BOG_MateChecker.hh:110:45: warning: suggest parentheses around â&&â within â||â >AS_BOG_MateChecker.hh: In member function âvoid MateLocation::incrRange(int32*, int32, int32, int32)â: >AS_BOG_MateChecker.hh:234:23: warning: comparison between signed and unsigned integer expressions >AS_BOG_BestOverlapGraph.cc: In member function âuint32 BestOverlapGraph::BEnd(const OVSoverlap&)â: >AS_BOG_BestOverlapGraph.cc:51:6: warning: suggest explicit braces to avoid ambiguous âelseâ >AS_BOG_BestOverlapGraph.cc:57:6: warning: suggest explicit braces to avoid ambiguous âelseâ >BuildUnitigs.cc: In function âint main(int, char**)â: >BuildUnitigs.cc:280:67: warning: format â%lldâ expects type âlong long intâ, but argument 3 has type âlong intâ >In file included from AS_BOG_MateChecker.cc:26:0: >AS_BOG_MateChecker.hh: In function âbool operator==(SeqInterval, SeqInterval)â: >AS_BOG_MateChecker.hh:110:45: warning: suggest parentheses around â&&â within â||â >AS_BOG_MateChecker.hh: In member function âvoid MateLocation::incrRange(int32*, int32, int32, int32)â: >AS_BOG_MateChecker.hh:234:23: warning: comparison between signed and unsigned integer expressions >AS_BOG_MateChecker.cc: In member function âvoid MateChecker::checkUnitigGraph(UnitigGraph&, int)â: >AS_BOG_MateChecker.cc:72:47: warning: comparison between signed and unsigned integer expressions >AS_BOG_MateChecker.cc: In member function âvoid MateChecker::computeGlobalLibStats(UnitigGraph&)â: >AS_BOG_MateChecker.cc:227:45: warning: comparison between signed and unsigned integer expressions >AS_BOG_MateChecker.cc:258:51: warning: comparison between signed and unsigned integer expressions >AS_BOG_MateChecker.cc:259:44: warning: comparison between signed and unsigned integer expressions >AS_BOG_MateChecker.cc:270:51: warning: comparison between signed and unsigned integer expressions >AS_BOG_MateChecker.cc:271:44: warning: comparison between signed and unsigned integer expressions >AS_BOG_MateChecker.cc: In member function âvoid MateChecker::evaluateMates(UnitigGraph&)â: >AS_BOG_MateChecker.cc:303:45: warning: comparison between signed and unsigned integer expressions >AS_BOG_MateChecker.cc:385:60: warning: comparison between signed and unsigned integer expressions >AS_BOG_MateChecker.cc:389:37: warning: comparison between signed and unsigned integer expressions >AS_BOG_MateChecker.cc:395:60: warning: comparison between signed and unsigned integer expressions >AS_BOG_MateChecker.cc:399:37: warning: comparison between signed and unsigned integer expressions >AS_BOG_MateChecker.cc: In member function âvoid MateChecker::moveContains(UnitigGraph&)â: >AS_BOG_MateChecker.cc:432:45: warning: comparison between signed and unsigned integer expressions >AS_BOG_MateChecker.cc:611:14: warning: suggest explicit braces to avoid ambiguous âelseâ >AS_BOG_MateChecker.cc:711:57: warning: comparison between signed and unsigned integer expressions >AS_BOG_MateChecker.cc: In member function âvoid MateChecker::splitDiscontinuousUnitigs(UnitigGraph&)â: >AS_BOG_MateChecker.cc:754:45: warning: comparison between signed and unsigned integer expressions >AS_BOG_MateChecker.cc:854:58: warning: comparison between signed and unsigned integer expressions >AS_BOG_MateChecker.cc: In member function âUnitigBreakPoints* MateChecker::computeMateCoverage(Unitig*, BestOverlapGraph*, int)â: >AS_BOG_MateChecker.cc:985:52: warning: suggest parentheses around â&&â within â||â >AS_BOG_MateChecker.cc:1060:51: warning: suggest parentheses around â&&â within â||â >AS_BOG_MateChecker.cc:1063:30: warning: comparison between signed and unsigned integer expressions >AS_BOG_MateChecker.cc: In member function âvoid MateLocation::buildHappinessGraphs(Unitig*, DistanceCompute*)â: >AS_BOG_MateChecker.cc:1236:68: warning: comparison between signed and unsigned integer expressions >AS_BOG_MateChecker.cc:1264:39: warning: comparison between signed and unsigned integer expressions >AS_BOG_MateChecker.cc:1265:39: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_BOG_Unitig.o AS_BOG_Unitig.cc >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_BOG_UnitigGraph.o AS_BOG_UnitigGraph.cc >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/fixUnitigs.o fixUnitigs.C >In file included from AS_BOG_Unitig.cc:24:0: >AS_BOG_Datatypes.hh:44:2: warning: #warning there is a comparison assuming fragment_end_type FIVE_PRIME < THREE_PRIME >AS_BOG_Unitig.cc:62:2: warning: #warning WHAT REALLLY HAPPENS IF NO BACKBONE NODE, OR NO PREVIOUS BACKBONE NODE >AS_BOG_Unitig.cc:227:2: warning: #warning not knowing the overlap length really hurts. >AS_BOG_Unitig.cc:282:2: warning: #warning not knowing the overlap length really hurts. >AS_BOG_Unitig.cc:470:2: warning: #warning not knowing the overlap length really hurts. >In file included from AS_BOG_UnitigGraph.cc:24:0: >AS_BOG_Datatypes.hh:44:2: warning: #warning there is a comparison assuming fragment_end_type FIVE_PRIME < THREE_PRIME >AS_BOG_UnitigGraph.cc:539:2: warning: #warning Reverse complement degrades assemblies >AS_BOG_UnitigGraph.cc:809:2: warning: #warning possible bug >AS_BOG_UnitigGraph.cc:1480:2: warning: #warning NEED TO SET AS_UTG_ERROR_RATE >AS_BOG_UnitigGraph.cc:1481:2: warning: #warning NEED TO SET AS_UTG_ERROR_RATE >AS_BOG_UnitigGraph.cc:1482:2: warning: #warning NEED TO SET AS_UTG_ERROR_RATE >AS_BOG_UnitigGraph.cc:2029:2: warning: #warning THIS IS VALGRIND UNCLEAN >fixUnitigs.C: In function âint updateFragmentWithParent(IntUnitigMesg*, int, OverlapStore*)â: >fixUnitigs.C:138:21: warning: format â%dâ expects type âintâ, but argument 8 has type âlong long intâ >fixUnitigs.C:138:21: warning: format â%dâ expects type âintâ, but argument 9 has type âlong long intâ >fixUnitigs.C:153:21: warning: format â%dâ expects type âintâ, but argument 8 has type âlong long intâ >fixUnitigs.C:153:21: warning: format â%dâ expects type âintâ, but argument 9 has type âlong long intâ >fixUnitigs.C:176:25: warning: format â%uâ expects type âunsigned intâ, but argument 5 has type âlong long unsigned intâ >fixUnitigs.C:176:25: warning: format â%dâ expects type âintâ, but argument 7 has type âlong long intâ >fixUnitigs.C:176:25: warning: format â%dâ expects type âintâ, but argument 8 has type âlong long intâ >fixUnitigs.C:245:25: warning: format â%uâ expects type âunsigned intâ, but argument 5 has type âlong long unsigned intâ >fixUnitigs.C:245:25: warning: format â%dâ expects type âintâ, but argument 7 has type âlong long intâ >fixUnitigs.C:245:25: warning: format â%dâ expects type âintâ, but argument 8 has type âlong long intâ >AS_BOG_Unitig.cc: In member function âbool Unitig::placeFrag(DoveTailNode&, int32&, BestEdgeOverlap*, DoveTailNode&, int32&, BestEdgeOverlap*)â: >AS_BOG_Unitig.cc:156:3: warning: comparison between signed and unsigned integer expressions >AS_BOG_Unitig.cc:157:3: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/scoreOverlaps.o scoreOverlaps.C >AS_BOG_Unitig.cc: In member function âbool Unitig::addAndPlaceFrag(int32, BestEdgeOverlap*, BestEdgeOverlap*, bool)â: >AS_BOG_Unitig.cc:604:47: warning: comparison between signed and unsigned integer expressions >AS_BOG_Unitig.cc: In member function âvoid Unitig::reverseComplement(bool)â: >AS_BOG_Unitig.cc:746:47: warning: comparison between signed and unsigned integer expressions >AS_BOG_Unitig.cc: In member function âvoid Unitig::sort()â: >AS_BOG_Unitig.cc:816:45: warning: comparison between signed and unsigned integer expressions >AS_BOG_UnitigGraph.cc: In member function âvoid UnitigGraph::checkUnitigMembership()â: >AS_BOG_UnitigGraph.cc:65:43: warning: comparison between signed and unsigned integer expressions >AS_BOG_UnitigGraph.cc: In member function âvoid UnitigGraph::reportOverlapsUsed(const char*)â: >AS_BOG_UnitigGraph.cc:148:41: warning: comparison between signed and unsigned integer expressions >AS_BOG_UnitigGraph.cc:149:41: warning: comparison between signed and unsigned integer expressions >AS_BOG_UnitigGraph.cc:150:41: warning: comparison between signed and unsigned integer expressions >AS_BOG_UnitigGraph.cc: In member function âvoid UnitigGraph::setParentAndHang(ChunkGraph*)â: >AS_BOG_UnitigGraph.cc:262:36: warning: comparison between signed and unsigned integer expressions >AS_BOG_UnitigGraph.cc:273:52: warning: comparison between signed and unsigned integer expressions >AS_BOG_UnitigGraph.cc:283:52: warning: comparison between signed and unsigned integer expressions >AS_BOG_UnitigGraph.cc: In member function âvoid UnitigGraph::breakUnitigs(ContainerMap&, char*)â: >AS_BOG_UnitigGraph.cc:629:58: warning: comparison between signed and unsigned integer expressions >AS_BOG_UnitigGraph.cc:642:58: warning: comparison between signed and unsigned integer expressions >AS_BOG_UnitigGraph.cc: In member function âvoid UnitigGraph::joinUnitigs()â: >AS_BOG_UnitigGraph.cc:860:41: warning: comparison between signed and unsigned integer expressions >AS_BOG_UnitigGraph.cc:1015:73: warning: comparison between signed and unsigned integer expressions >AS_BOG_UnitigGraph.cc:1018:73: warning: comparison between signed and unsigned integer expressions >AS_BOG_UnitigGraph.cc:1042:54: warning: comparison between signed and unsigned integer expressions >AS_BOG_UnitigGraph.cc:1070:50: warning: comparison between signed and unsigned integer expressions >AS_BOG_UnitigGraph.cc:1074:50: warning: comparison between signed and unsigned integer expressions >AS_BOG_UnitigGraph.cc: In member function âvoid UnitigGraph::placeContains()â: >AS_BOG_UnitigGraph.cc:1205:35: warning: comparison between signed and unsigned integer expressions >AS_BOG_UnitigGraph.cc: In member function âvoid UnitigGraph::placeZombies()â: >AS_BOG_UnitigGraph.cc:1240:36: warning: comparison between signed and unsigned integer expressions >AS_BOG_UnitigGraph.cc: In member function âvoid UnitigGraph::popBubbles(OverlapStore*, OverlapStore*)â: >AS_BOG_UnitigGraph.cc:1312:36: warning: comparison between signed and unsigned integer expressions >AS_BOG_UnitigGraph.cc:1338:57: warning: comparison between signed and unsigned integer expressions >AS_BOG_UnitigGraph.cc:1365:33: warning: comparison between signed and unsigned integer expressions >AS_BOG_UnitigGraph.cc:1370:27: warning: comparison between signed and unsigned integer expressions >AS_BOG_UnitigGraph.cc:1382:33: warning: comparison between signed and unsigned integer expressions >AS_BOG_UnitigGraph.cc:1387:27: warning: comparison between signed and unsigned integer expressions >AS_BOG_UnitigGraph.cc:1538:57: warning: comparison between signed and unsigned integer expressions >AS_BOG_UnitigGraph.cc:1697:59: warning: comparison between signed and unsigned integer expressions >AS_BOG_UnitigGraph.cc: In member function âfloat UnitigGraph::getGlobalArrivalRate(long int, long int)â: >AS_BOG_UnitigGraph.cc:1819:13: warning: comparison between signed and unsigned integer expressions >AS_BOG_UnitigGraph.cc:1846:34: warning: comparison between signed and unsigned integer expressions >AS_BOG_UnitigGraph.cc: In member function âUnitigVector* UnitigGraph::breakUnitigAt(ContainerMap&, Unitig*, UnitigBreakPoints&)â: >AS_BOG_UnitigGraph.cc:2104:46: warning: comparison between signed and unsigned integer expressions >AS_BOG_UnitigGraph.cc:2112:65: warning: suggest parentheses around â&&â within â||â >AS_BOG_UnitigGraph.cc:2118:66: warning: suggest parentheses around â&&â within â||â >AS_BOG_UnitigGraph.cc:2183:44: warning: comparison between signed and unsigned integer expressions >AS_BOG_UnitigGraph.cc:2235:63: warning: suggest parentheses around â&&â within â||â >AS_BOG_UnitigGraph.cc:2254:64: warning: suggest parentheses around â&&â within â||â >AS_BOG_UnitigGraph.cc: In member function âvoid UnitigGraph::writeIUMtoFile(char*, char*, int)â: >AS_BOG_UnitigGraph.cc:2354:28: warning: comparison between signed and unsigned integer expressions >AS_BOG_UnitigGraph.cc:2367:51: warning: format â%lldâ expects type âlong long intâ, but argument 6 has type âuint32â >AS_BOG_UnitigGraph.cc:2369:35: warning: comparison between signed and unsigned integer expressions >In file included from scoreOverlaps.C:24:0: >AS_BOG_Datatypes.hh:44:2: warning: #warning there is a comparison assuming fragment_end_type FIVE_PRIME < THREE_PRIME >In file included from scoreOverlaps.C:28:0: >AS_BOG_MateChecker.hh: In function âbool operator==(SeqInterval, SeqInterval)â: >AS_BOG_MateChecker.hh:110:45: warning: suggest parentheses around â&&â within â||â >AS_BOG_MateChecker.hh: In member function âvoid MateLocation::incrRange(int32*, int32, int32, int32)â: >AS_BOG_MateChecker.hh:234:23: warning: comparison between signed and unsigned integer expressions >scoreOverlaps.C: In function âint main(int, char**)â: >scoreOverlaps.C:190:47: warning: format â%5dâ expects type âintâ, but argument 10 has type âlong long intâ >scoreOverlaps.C:190:47: warning: format â%5dâ expects type âintâ, but argument 11 has type âlong long intâ >scoreOverlaps.C:190:47: warning: too many arguments for format >############################## AS_REZ ############################## >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ConsistencyChecksREZ.o ConsistencyChecksREZ.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/GapFillREZ.o GapFillREZ.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/GapWalkerREZ.o GapWalkerREZ.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/StatisticsREZ.o StatisticsREZ.C >GapFillREZ.C: In function âint Place_Closure_Chunk(Scaffold_Fill_t*, ContigT*, int, int, char, int)â: >GapFillREZ.C:777:20: warning: comparison between signed and unsigned integer expressions >GapFillREZ.C:802:131: warning: format â%fâ expects type âdoubleâ, but argument 4 has type âintâ >GapFillREZ.C: In function âvoid Choose_Stones(Scaffold_Fill_t*, int, int, int)â: >GapFillREZ.C:3785:63: warning: comparison between signed and unsigned integer expressions >GapFillREZ.C:3796:61: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/UpdateREZ.o UpdateREZ.C >GapFillREZ.C: In function âvoid Print_Frag_Info(FILE*, int)â: >GapFillREZ.C:8825:64: warning: format â%5.0fâ expects type âdoubleâ, but argument 4 has type âCDS_CID_tâ >GapFillREZ.C:8825:64: warning: too many arguments for format >GapFillREZ.C: In function âvoid Print_Potential_Fill_Chunks(FILE*, int (*)(ContigT*), int)â: >GapFillREZ.C:8957:63: warning: comparison between signed and unsigned integer expressions >GapFillREZ.C: In function âvoid Reverse_Positions(Gap_Fill_t*)â: >GapFillREZ.C:9595:72: warning: operation on âthis_gap->Gap_Fill_t::adjustment.LengthT::meanâ may be undefined >StatisticsREZ.C: In function âvoid compute_scaffold_statistics(ScaffoldWalkStatisticsT*)â: >StatisticsREZ.C:142:49: warning: comparison between signed and unsigned integer expressions >StatisticsREZ.C: In function âvoid print_scaffold_walk_stat_struct(ScaffoldWalkStatisticsT*, FILE*, int)â: >StatisticsREZ.C:243:53: warning: comparison between signed and unsigned integer expressions >StatisticsREZ.C: In function âvoid compute_combined_walk_statistics(WalkStatisticsT*)â: >StatisticsREZ.C:461:62: warning: comparison between signed and unsigned integer expressions >StatisticsREZ.C: In function âvoid output_combined_celagram_files(WalkStatisticsT*)â: >StatisticsREZ.C:565:63: warning: comparison between signed and unsigned integer expressions >StatisticsREZ.C:572:56: warning: comparison between signed and unsigned integer expressions >StatisticsREZ.C: In function âvoid free_walk_statistics(WalkStatisticsT*)â: >StatisticsREZ.C:633:63: warning: comparison between signed and unsigned integer expressions >StatisticsREZ.C: In function âvoid print_all_scaffold_walk_stat_struct(char*, WalkStatisticsT*, FILE*, int)â: >StatisticsREZ.C:645:62: warning: comparison between signed and unsigned integer expressions >StatisticsREZ.C:648:24: warning: format not a string literal and no format arguments >StatisticsREZ.C: In function âint read_scaffold_walk_statistics(ScaffoldWalkStatisticsT*)â: >StatisticsREZ.C:434:62: warning: ignoring return value of âint fscanf(FILE*, const char*, ...)â, declared with attribute warn_unused_result >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/UtilsREZ.o UtilsREZ.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MicroHetREZ.o MicroHetREZ.C >GapFillREZ.C: In function âint _ZL19Place_Closure_ChunkP15Scaffold_Fill_tP9NodeCGW_Tiici.clone.31(Scaffold_Fill_t*, double*, double*, int, int, char, int)â: >GapFillREZ.C:764:11: warning: âbestScfIDâ may be used uninitialized in this function >GapFillREZ.C:764:22: warning: âbestGapâ may be used uninitialized in this function >############################## AS_CNS ############################## >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Array_CNS.o Array_CNS.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MultiAlign.o MultiAlign.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MultiAlignPrint.o MultiAlignPrint.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MultiAlignStore.o MultiAlignStore.C >MultiAlign.C: In function âsize_t saveVARData(MultiAlignT*, char*&)â: >MultiAlign.C:352:50: warning: comparison between signed and unsigned integer expressions >MultiAlign.C: In function âvoid restoreVARData(char*&, MultiAlignT*)â: >MultiAlign.C:381:50: warning: comparison between signed and unsigned integer expressions >MultiAlign.C:396:50: warning: comparison between signed and unsigned integer expressions >MultiAlign.C: In function âvoid DumpMultiAlignForHuman(FILE*, MultiAlignT*, bool)â: >MultiAlign.C:653:50: warning: comparison between signed and unsigned integer expressions >MultiAlign.C:665:51: warning: comparison between signed and unsigned integer expressions >MultiAlign.C: In function âbool LoadMultiAlignFromHuman(MultiAlignT*, bool&, FILE*)â: >MultiAlign.C:810:112: warning: format â%sâ expects type âchar*â, but argument 4 has type âint32â >MultiAlign.C:810:112: warning: too many arguments for format >MultiAlign.C:815:109: warning: too few arguments for format >MultiAlign.C:829:121: warning: format â%sâ expects type âchar*â, but argument 4 has type âint32â >MultiAlign.C:829:121: warning: too many arguments for format >MultiAlign.C:855:75: warning: format â%sâ expects type âchar*â, but argument 3 has type âint32â >MultiAlign.C:855:75: warning: too many arguments for format >MultiAlign.C:860:100: warning: too few arguments for format >MultiAlign.C:865:108: warning: format â%sâ expects type âchar*â, but argument 4 has type âint32â >MultiAlign.C:865:108: warning: too many arguments for format >MultiAlign.C:870:102: warning: too few arguments for format >MultiAlign.C:875:110: warning: format â%sâ expects type âchar*â, but argument 4 has type âint32â >MultiAlign.C:875:110: warning: too many arguments for format >MultiAlign.C:886:30: warning: comparison between signed and unsigned integer expressions >MultiAlign.C:915:130: warning: format â%sâ expects type âchar*â, but argument 6 has type âint32â >MultiAlign.C:915:130: warning: too many arguments for format >MultiAlign.C:931:30: warning: comparison between signed and unsigned integer expressions >MultiAlign.C:949:91: warning: format â%sâ expects type âchar*â, but argument 3 has type âint32â >MultiAlign.C:949:91: warning: too many arguments for format >MultiAlign.C:973:130: warning: format â%sâ expects type âchar*â, but argument 6 has type âint32â >MultiAlign.C:973:130: warning: too many arguments for format >MultiAlignStore.C: In member function âvoid MultiAlignStore::insertMultiAlign(MultiAlignT*, bool, bool)â: >MultiAlignStore.C:323:7: warning: comparison between signed and unsigned integer expressions >MultiAlignStore.C:345:7: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MultiAlignment_CNS.o MultiAlignment_CNS.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/RefreshMANode.o RefreshMANode.C >MultiAlignment_CNS.C: In function âint GetMANodePositions(int32, MultiAlignT*)â: >MultiAlignment_CNS.C:470:50: warning: comparison between signed and unsigned integer expressions >MultiAlignment_CNS.C:531:50: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AbacusRefine.o AbacusRefine.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ApplyAlignment.o ApplyAlignment.C >ApplyAlignment.C:521:2: warning: #warning assert skipped until contig consensus gets fixed >AbacusRefine.C: In function âint32 RefineOrigAbacus(Abacus*, VarRegion)â: >AbacusRefine.C:642:1: warning: no return statement in function returning non-void >ApplyAlignment.C: In function âvoid CheckColumns()â: >ApplyAlignment.C:104:44: warning: comparison between signed and unsigned integer expressions >ApplyAlignment.C: In function âvoid ApplyAlignment(int32, int32, int32*, int32, int32, int32*)â: >ApplyAlignment.C:362:21: warning: converting to non-pointer type âintâ from NULL >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/BaseCall.o BaseCall.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/GetAlignmentTrace.o GetAlignmentTrace.C >GetAlignmentTrace.C:400:2: warning: #warning CNS_TIGHTSEMIBANDWIDTH relaxed to get around BOG placement problems >BaseCall.C: In function âint BaseCall(int32, int, double*, VarRegion*, int, char*, int, int, CNS_Options*)â: >BaseCall.C:58:11: warning: âbi_consâ may be used uninitialized in this function >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MergeMultiAligns.o MergeMultiAligns.C >AbacusRefine.C: In function âint _ZL12RefineWindowP6MANodeP6ColumniP11CNS_Options.clone.10(int32, int32, int, CNS_Options*)â: >AbacusRefine.C:1972:63: warning: âscore_reductionâ may be used uninitialized in this function >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MergeRefine.o MergeRefine.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MultiAlignContig.o MultiAlignContig.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MultiAlignUnitig.o MultiAlignUnitig.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/PrintAlignment.o PrintAlignment.C >MultiAlignContig.C: In function âint MultiAlignContig(MultiAlignT*, gkStore*, CNS_PrintKey, CNS_Options*)â: >MultiAlignContig.C:189:44: warning: comparison between signed and unsigned integer expressions >MultiAlignContig.C:190:44: warning: comparison between signed and unsigned integer expressions >MultiAlignContig.C:341:58: warning: comparison between signed and unsigned integer expressions >MultiAlignUnitig.C: In member function âint unitigConsensus::computePositionFromLayout()â: >MultiAlignUnitig.C:514:18: warning: comparison between signed and unsigned integer expressions >MultiAlignUnitig.C: In member function âvoid unitigConsensus::rebuildFrankensteinFromConsensus()â: >MultiAlignUnitig.C:693:21: warning: comparison between signed and unsigned integer expressions >MultiAlignUnitig.C: In member function âint unitigConsensus::alignFragmentToFragments()â: >MultiAlignUnitig.C:872:30: warning: comparison between signed and unsigned integer expressions >MultiAlignUnitig.C:954:49: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ReplaceEndUnitigInContig.o ReplaceEndUnitigInContig.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/utgcns.o utgcns.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ctgcns.o ctgcns.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/tigStore.o tigStore.C >tigStore.C: In function âvoid dumpConsensus(MultiAlignStore*, int32, int32, MultiAlignT*, bool)â: >tigStore.C:216:113: warning: format â%lluâ expects type âlong long unsigned intâ, but argument 5 has type âsize_tâ >tigStore.C: In function âvoid changeProperties(MultiAlignStore*, char*)â: >tigStore.C:55:34: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >tigStore.C:133:36: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >############################## AS_LIN ############################## >gcc -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dpbtrf.o dpbtrf.c >gcc -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dpbtrs.o dpbtrs.c >gcc -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/daxpy.o daxpy.c >gcc -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dgemm.o dgemm.c >dgemm.c: In function âdgemm_â: >dgemm.c:239:5: warning: suggest parentheses around â&&â within â||â >gcc -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dgemv.o dgemv.c >dgemv.c: In function âdgemv_â: >dgemv.c:154:5: warning: suggest parentheses around â&&â within â||â >gcc -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dlamch.o dlamch.c >gcc -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dpbtf2.o dpbtf2.c >gcc -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dpotf2.o dpotf2.c >gcc -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dptrfs.o dptrfs.c >gcc -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dpttrs.o dpttrs.c >gcc -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dsyr.o dsyr.c >gcc -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dsyrk.o dsyrk.c >dsyrk.c: In function âdsyrk_â: >dsyrk.c:205:5: warning: suggest parentheses around â&&â within â||â >gcc -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dtbsv.o dtbsv.c >gcc -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dtrsm.o dtrsm.c >gcc -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/idamax.o idamax.c >gcc -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ilaenv.o ilaenv.c >ilaenv.c: In function âilaenv_â: >ilaenv.c:171:2: warning: suggest parentheses around â&&â within â||â >ilaenv.c:172:3: warning: suggest parentheses around â&&â within â||â >ilaenv.c:176:3: warning: suggest parentheses around â&&â within â||â >ilaenv.c:177:4: warning: suggest parentheses around â&&â within â||â >gcc -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/lsame.o lsame.c >lsame.c: In function âlsame_â: >lsame.c:71:2: warning: suggest parentheses around â&&â within â||â >lsame.c:72:3: warning: suggest parentheses around â&&â within â||â >lsame.c:75:2: warning: suggest parentheses around â&&â within â||â >lsame.c:76:3: warning: suggest parentheses around â&&â within â||â >gcc -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/xerbla.o xerbla.c >gcc -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/s_copy.o s_copy.c >gcc -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/s_cmp.o s_cmp.c >gcc -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ddot.o ddot.c >gcc -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dscal.o dscal.c >############################## AS_CGW ############################## >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGW_main.o AS_CGW_main.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/eCR.o eCR.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/eCR-examineGap.o eCR-examineGap.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/eCR-diagnostic.o eCR-diagnostic.C >eCR.C: In function âint findLastUnitig(ContigT*, int*)â: >eCR.C:1389:45: warning: comparison between signed and unsigned integer expressions >eCR.C: In function âfragPositions* getAlteredFragPositions(NodeCGW_T*, int, int)â: >eCR.C:1499:45: warning: comparison between signed and unsigned integer expressions >eCR.C:1505:23: warning: comparison between signed and unsigned integer expressions >eCR.C:1539:51: warning: comparison between signed and unsigned integer expressions >eCR.C: In function âint GetNewUnitigMultiAlign(NodeCGW_T*, fragPositions*, int, int)â: >eCR.C:1654:26: warning: comparison between signed and unsigned integer expressions >eCR.C:1665:26: warning: comparison between signed and unsigned integer expressions >eCR.C:1705:27: warning: comparison between signed and unsigned integer expressions >eCR-examineGap.C: In function âint examineGap(ContigT*, int, ContigT*, int, int, int*, int*, int*, int*, int*, int*, int*, int, int, int*, int*)â: >eCR-examineGap.C:273:49: warning: comparison between signed and unsigned integer expressions >eCR-examineGap.C:311:21: warning: comparison between signed and unsigned integer expressions >eCR-diagnostic.C: In function âvoid DumpContigMultiAlignInfo(char*, MultiAlignT*, int)â: >eCR-diagnostic.C:42:55: warning: format â%9ldâ expects type âlong intâ, but argument 4 has type âsize_tâ >eCR-diagnostic.C:44:49: warning: comparison between signed and unsigned integer expressions >eCR-diagnostic.C:50:50: warning: comparison between signed and unsigned integer expressions >eCR-diagnostic.C:61:51: warning: comparison between signed and unsigned integer expressions >eCR-diagnostic.C: In function âvoid DumpUnitigInfo(char*, NodeCGW_T*)â: >eCR-diagnostic.C:91:49: warning: comparison between signed and unsigned integer expressions >eCR-diagnostic.C: In function âvoid DumpContigUngappedOffsets(char*, int)â: >eCR-diagnostic.C:146:48: warning: comparison between signed and unsigned integer expressions >eCR-diagnostic.C: In function âvoid DumpUnitigInfo(char*, NodeCGW_T*)â: >eCR-diagnostic.C:84:39: warning: âiâ is used uninitialized in this function >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/eCR-partition.o eCR-partition.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/resolveSurrogates.o resolveSurrogates.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dumpCloneMiddles.o dumpCloneMiddles.C >eCR-partition.C: In function âint main(int, char**)â: >eCR-partition.C:110:55: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/exploreGapStructure.o exploreGapStructure.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/frgs2clones.o frgs2clones.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dumpSingletons.o dumpSingletons.C >exploreGapStructure.C: In function âint main(int, char**)â: >exploreGapStructure.C:82:11: warning: âvarPrevâ may be used uninitialized in this function >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Globals_CGW.o Globals_CGW.C >dumpSingletons.C: In function âint main(int, char**)â: >dumpSingletons.C:122:64: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGW_EdgeDiagnostics.o AS_CGW_EdgeDiagnostics.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CIEdgeT_CGW.o CIEdgeT_CGW.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CIScaffoldT_Biconnected_CGW.o CIScaffoldT_Biconnected_CGW.C >AS_CGW_EdgeDiagnostics.C: In function âint PopulateOrientHTFromArray(HashTable_AS*, VarArrayOrientHolder*)â: >AS_CGW_EdgeDiagnostics.C:510:45: warning: comparison between signed and unsigned integer expressions >AS_CGW_EdgeDiagnostics.C: In function âvoid ValidateAllContigEdges(ScaffoldGraphT*, int)â: >AS_CGW_EdgeDiagnostics.C:850:59: warning: comparison between signed and unsigned integer expressions >AS_CGW_EdgeDiagnostics.C: In function âint CountUniqueIDs(VarArrayCDS_CID_t*)â: >AS_CGW_EdgeDiagnostics.C:1091:51: warning: comparison between signed and unsigned integer expressions >CIEdgeT_CGW.C: In function âint CheckImplicitOverlaps_(GraphCGW_T*, CDS_CID_t, int)â: >CIEdgeT_CGW.C:278:39: warning: missing braces around initializer for âChunkOverlapSpecTâ >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CIScaffoldT_CGW.o CIScaffoldT_CGW.C >CIScaffoldT_CGW.C: In function âint IsScaffoldInternallyConnected(ScaffoldGraphT*, CIScaffoldT*, int32)â: >CIScaffoldT_CGW.C:737:52: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_CGW.C: In function âvoid killScaffoldIfOnlySurrogate(CDS_CID_t)â: >CIScaffoldT_CGW.C:857:9: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_CGW.C:872:9: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_CGW.C:883:9: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_CGW.C: In function âvoid CheckCIScaffoldT(ScaffoldGraphT*, CIScaffoldT*)â: >CIScaffoldT_CGW.C:1433:51: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CIScaffoldT_Cleanup_CGW.o CIScaffoldT_Cleanup_CGW.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CIScaffoldT_Merge_CGW.o CIScaffoldT_Merge_CGW.C >CIScaffoldT_Cleanup_CGW.C: In function âvoid PropagateContainmentOverlapsToNewContig(ContigT*, VarArrayIntElementPos*, int32, int32)â: >CIScaffoldT_Cleanup_CGW.C:80:54: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Cleanup_CGW.C:240:39: warning: missing braces around initializer for âChunkOverlapSpecTâ >CIScaffoldT_Cleanup_CGW.C: In function âvoid PropagateInternalOverlapsToNewContig(ContigT*, VarArrayIntElementPos*, CDS_CID_t, int32, int32)â: >CIScaffoldT_Cleanup_CGW.C:375:54: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Cleanup_CGW.C:534:30: warning: missing braces around initializer for âChunkOverlapSpecTâ >CIScaffoldT_Cleanup_CGW.C:603:51: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Cleanup_CGW.C:692:66: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Cleanup_CGW.C:720:53: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Cleanup_CGW.C:745:50: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Cleanup_CGW.C:749:30: warning: missing braces around initializer for âChunkOverlapSpecTâ >CIScaffoldT_Cleanup_CGW.C:771:32: warning: missing braces around initializer for âChunkOverlapSpecTâ >CIScaffoldT_Cleanup_CGW.C: In function âvoid PropagateExtremalOverlapsToNewContig(CDS_CID_t, int, ContigT*, int, int32, int32)â: >CIScaffoldT_Cleanup_CGW.C:975:37: warning: missing braces around initializer for âChunkOverlapSpecTâ >CIScaffoldT_Cleanup_CGW.C: In function âvoid PropagateOverlapsToNewContig(ContigT*, VarArrayIntElementPos*, CDS_CID_t, int, CDS_CID_t, int, CDS_CID_t, int32)â: >CIScaffoldT_Cleanup_CGW.C:1059:54: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Cleanup_CGW.C: In function âint DeleteAllSurrogateContigsFromFailedMerges(CIScaffoldT*, NodeCGW_T*)â: >CIScaffoldT_Cleanup_CGW.C:1370:48: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Cleanup_CGW.C:1397:50: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Cleanup_CGW.C: In function âint CleanupAScaffold(ScaffoldGraphT*, CIScaffoldT*, int, int, int)â: >CIScaffoldT_Cleanup_CGW.C:1511:80: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Cleanup_CGW.C:1512:80: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Cleanup_CGW.C:1547:125: warning: too many arguments for format >CIScaffoldT_Cleanup_CGW.C:1665:60: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Cleanup_CGW.C: In function âint CreateAContigInScaffold(CIScaffoldT*, VarArrayIntElementPos*, LengthT, LengthT)â: >CIScaffoldT_Cleanup_CGW.C:1893:60: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Cleanup_CGW.C:1955:62: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Cleanup_CGW.C:1995:60: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Cleanup_CGW.C:2030:60: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Cleanup_CGW.C: In function âvoid RepairContigNeighbors(ChunkInstanceT*)â: >CIScaffoldT_Cleanup_CGW.C:2445:52: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Cleanup_CGW.C:2448:25: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Cleanup_CGW.C: In function âvoid RemoveSurrogateDuplicates()â: >CIScaffoldT_Cleanup_CGW.C:2550:92: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Cleanup_CGW.C:2554:7: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Cleanup_CGW.C:2615:9: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Celamy_CGW.o Celamy_CGW.C >CIScaffoldT_Merge_CGW.C: In function âint isLargeOverlapSize(LengthT*, int32)â: >CIScaffoldT_Merge_CGW.C:614:40: warning: format â%fâ expects type âdoubleâ, but argument 9 has type âintâ >CIScaffoldT_Merge_CGW.C: In function âint DoesScaffoldCFit(CIScaffoldT*, CIScaffoldT*, CIScaffoldT*, SEdgeT*, SEdgeT*, VarArrayPtrT*, VarArrayPtrT*, int32*, int, int32)â: >CIScaffoldT_Merge_CGW.C:1292:45: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Merge_CGW.C: In function âvoid ZeroEdgeWeights(VarArrayPtrT*)â: >CIScaffoldT_Merge_CGW.C:1466:35: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Merge_CGW.C: In function âint AssignEdgeWeights(VarArrayPtrT*, SEdgeT*, CIScaffoldT*, VarArrayPtrT*, CIScaffoldT*, VarArrayPtrT*, int, int)â: >CIScaffoldT_Merge_CGW.C:1496:40: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Merge_CGW.C:1520:42: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Merge_CGW.C:1643:40: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Merge_CGW.C: In function âSEdgeT* FindMoreAttractiveMergeEdge(SEdgeT*, CIScaffoldT*, CIScaffoldT*, int32, int, int, int32)â: >CIScaffoldT_Merge_CGW.C:1795:43: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Merge_CGW.C: In function âint isQualityScaffoldMergingEdge(SEdgeT*, CIScaffoldT*, CIScaffoldT*, ScaffoldInstrumenter*, VarArrayMateInstrumenterP*, float, float)â: >CIScaffoldT_Merge_CGW.C:1926:78: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Merge_CGW.C:1927:78: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Merge_CGW.C: In function âvoid SaveBadScaffoldMergeEdge(SEdgeT*, ChunkOverlapperT*)â: >CIScaffoldT_Merge_CGW.C:2035:33: warning: missing braces around initializer for âChunkOverlapSpecTâ >CIScaffoldT_Merge_CGW.C: In function âvoid ExamineUsableSEdgeSet(VarArrayPtrT*, int, InterleavingSpec*, int)â: >CIScaffoldT_Merge_CGW.C:2721:37: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Merge_CGW.C: In function âvoid ExamineUsableSEdges(VarArrayPtrT*, int, InterleavingSpec*, int)â: >CIScaffoldT_Merge_CGW.C:2746:43: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Merge_CGW.C:2756:43: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Merge_CGW.C: In function âint BuildSEdgesForMerging(ScaffoldGraphT*, VarArrayPtrT**, VarArrayPtrT**, float*, int, InterleavingSpec*, int32)â: >CIScaffoldT_Merge_CGW.C:2811:45: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Merge_CGW.C: In function âvoid MergeScaffoldsAggressive(ScaffoldGraphT*, char*, int)â: >CIScaffoldT_Merge_CGW.C:3301:42: warning: comparison between signed and unsigned integer expressions >CIScaffoldT_Merge_CGW.C: In function âint TouchesMarkedScaffolds(SEdgeT*)â: >CIScaffoldT_Merge_CGW.C:598:1: warning: control reaches end of non-void function >Celamy_CGW.C: In function âvoid drawSurrogateFrags(FILE*, ContigT*, int, int)â: >Celamy_CGW.C:197:53: warning: comparison between signed and unsigned integer expressions >Celamy_CGW.C:208:56: warning: comparison between signed and unsigned integer expressions >Celamy_CGW.C:251:31: warning: format â%dâ expects type âintâ, but argument 5 has type âlong intâ >Celamy_CGW.C:263:34: warning: format â%dâ expects type âintâ, but argument 5 has type âlong intâ >Celamy_CGW.C: In function âvoid drawFrags(FILE*, ContigT*, int, int)â: >Celamy_CGW.C:277:52: warning: comparison between signed and unsigned integer expressions >Celamy_CGW.C: In function âvoid CelamyScaffold(FILE*, CIScaffoldT*, int64, int64)â: >Celamy_CGW.C:450:25: warning: too few arguments for format >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ChunkOverlap_CGW.o ChunkOverlap_CGW.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ContigT_CGW.o ContigT_CGW.C >ChunkOverlap_CGW.C: In function âvoid printChunkOverlapCheckT(char*, ChunkOverlapCheckT*)â: >ChunkOverlap_CGW.C:190:97: warning: format â%dâ expects type âintâ, but argument 20 has type âdoubleâ >ChunkOverlap_CGW.C: In function âvoid CreateChunkOverlapFromEdge(GraphCGW_T*, EdgeCGW_T*)â: >ChunkOverlap_CGW.C:382:32: warning: missing braces around initializer for âChunkOverlapSpecTâ >ChunkOverlap_CGW.C: In function âvoid FillChunkOverlapWithOVL(GraphCGW_T*, OverlapMesg*)â: >ChunkOverlap_CGW.C:455:32: warning: missing braces around initializer for âChunkOverlapSpecTâ >ChunkOverlap_CGW.C: In function âvoid CollectChunkOverlap(GraphCGW_T*, CDS_CID_t, CDS_CID_t, PairOrient, float, float, float, int, int, int)â: >ChunkOverlap_CGW.C:712:32: warning: missing braces around initializer for âChunkOverlapSpecTâ >ChunkOverlap_CGW.C: In function âChunkOverlapCheckT OverlapChunks(GraphCGW_T*, CDS_CID_t, CDS_CID_t, PairOrient, int32, int32, float, int)â: >ChunkOverlap_CGW.C:1076:31: warning: missing braces around initializer for âChunkOverlapSpecTâ >ContigT_CGW.C: In function âvoid dumpContigInfo(ChunkInstanceT*)â: >ContigT_CGW.C:138:89: warning: format â%ldâ expects type âlong intâ, but argument 4 has type âsize_tâ >ContigT_CGW.C:151:65: warning: comparison between signed and unsigned integer expressions >ContigT_CGW.C: In function âint BuildContigEdges(ScaffoldGraphT*)â: >ContigT_CGW.C:527:59: warning: comparison between signed and unsigned integer expressions >ContigT_CGW.C: In function âvoid CheckAllContigFragments()â: >ContigT_CGW.C:987:49: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/DemoteUnitigsWithRBP_CGW.o DemoteUnitigsWithRBP_CGW.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/fragmentPlacement.o fragmentPlacement.C >fragmentPlacement.C:197:2: warning: #warning INNIE mate pairs assumed >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/GraphCGW_T.o GraphCGW_T.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Input_CGW.o Input_CGW.C >fragmentPlacement.C: In function âint NextCIFragTInChunkIterator(CGWFragIterator*, CIFragT**)â: >fragmentPlacement.C:277:69: warning: comparison between signed and unsigned integer expressions >fragmentPlacement.C: In function âvoid ReallyAssignFragsToResolvedCI(CDS_CID_t, CDS_CID_t, VarArrayCDS_CID_t*)â: >fragmentPlacement.C:528:47: warning: comparison between signed and unsigned integer expressions >fragmentPlacement.C:560:75: warning: comparison between signed and unsigned integer expressions >fragmentPlacement.C:561:29: warning: comparison between signed and unsigned integer expressions >fragmentPlacement.C: In function âint getChunkInstanceID(ChunkInstanceT*, int)â: >fragmentPlacement.C:667:3: warning: comparison between signed and unsigned integer expressions >GraphCGW_T.C: In function âvoid SaveGraphCGWToStream(GraphCGW_T*, FILE*)â: >GraphCGW_T.C:100:7: warning: comparison between signed and unsigned integer expressions >GraphCGW_T.C: In function âGraphCGW_T* LoadGraphCGWFromStream(FILE*)â: >GraphCGW_T.C:136:5: warning: comparison between signed and unsigned integer expressions >GraphCGW_T.C: In function âvoid DeleteGraphNode(GraphCGW_T*, NodeCGW_T*)â: >GraphCGW_T.C:712:38: warning: comparison between signed and unsigned integer expressions >Input_CGW.C: In function âint ProcessInput(int, int, char**)â: >Input_CGW.C:111:57: warning: comparison between signed and unsigned integer expressions >GraphCGW_T.C: In function âvoid MergeNodeGraphEdges(GraphCGW_T*, NodeCGW_T*, int, int, int)â: >GraphCGW_T.C:1400:52: warning: comparison between signed and unsigned integer expressions >GraphCGW_T.C:1438:44: warning: comparison between signed and unsigned integer expressions >GraphCGW_T.C: In function âvoid CheckEdgesAgainstOverlapper(GraphCGW_T*)â: >GraphCGW_T.C:1474:31: warning: missing braces around initializer for âChunkOverlapSpecTâ >Input_CGW.C: In function âvoid ProcessInputUnitig(MultiAlignT*)â: >Input_CGW.C:234:52: warning: comparison between signed and unsigned integer expressions >GraphCGW_T.C: In function âvoid UpdateNodeFragments(GraphCGW_T*, CDS_CID_t, int, int)â: >GraphCGW_T.C:1601:47: warning: comparison between signed and unsigned integer expressions >GraphCGW_T.C:1617:47: warning: comparison between signed and unsigned integer expressions >GraphCGW_T.C:1635:30: warning: comparison between signed and unsigned integer expressions >GraphCGW_T.C:1640:30: warning: comparison between signed and unsigned integer expressions >GraphCGW_T.C: In function âCDS_CID_t SplitUnresolvedCI(GraphCGW_T*, CDS_CID_t, VarArrayCDS_CID_t*)â: >GraphCGW_T.C:2356:5: warning: comparison between signed and unsigned integer expressions >GraphCGW_T.C:2381:5: warning: comparison between signed and unsigned integer expressions >GraphCGW_T.C: In function âvoid ComputeMatePairDetailedStatus()â: >GraphCGW_T.C:2756:7: warning: comparison between signed and unsigned integer expressions >GraphCGW_T.C:2768:7: warning: comparison between signed and unsigned integer expressions >GraphCGW_T.C: In function âvoid ComputeMatePairStatisticsRestricted(int, int32, char*)â: >GraphCGW_T.C:3074:51: warning: comparison between signed and unsigned integer expressions >GraphCGW_T.C:3141:7: warning: comparison between signed and unsigned integer expressions >GraphCGW_T.C:3166:33: warning: comparison between signed and unsigned integer expressions >GraphCGW_T.C:3401:52: warning: comparison between signed and unsigned integer expressions >GraphCGW_T.C:3554:48: warning: comparison between signed and unsigned integer expressions >GraphCGW_T.C:3670:50: warning: comparison between signed and unsigned integer expressions >GraphCGW_T.C: In function âvoid CheckUnitigs(CDS_CID_t)â: >GraphCGW_T.C:3847:49: warning: comparison between signed and unsigned integer expressions >GraphCGW_T.C: In function âvoid CheckSurrogateUnitigs()â: >GraphCGW_T.C:3874:90: warning: comparison between signed and unsigned integer expressions >GraphCGW_T.C:3878:5: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Instrument_CGW.o Instrument_CGW.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/InterleavedMerging.o InterleavedMerging.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/LeastSquaresGaps_CGW.o LeastSquaresGaps_CGW.C >Instrument_CGW.C: In function âint DetectBreakpointType(ScaffoldGraphT*, VarArrayInstrumenterBreakpoint*, int32, int32, VarArrayMateDetail*, InstBreakpointType)â: >Instrument_CGW.C:1555:60: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C: In function âvoid InstrumentFloatStatistics(VarArrayfloat*, InstrumenterStatistics*, int)â: >Instrument_CGW.C:1736:35: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C: In function âvoid InstrumentCoordStatistics(VarArrayint32*, InstrumenterStatistics*, int)â: >Instrument_CGW.C:1785:35: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C: In function âvoid AddFragDetailsToMateStats(MateStats*, VarArrayFragDetail*)â: >Instrument_CGW.C:1827:41: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C: In function âvoid AddMateDetailsToMateStatsSet(MateStats*, VarArrayMateDetail*)â: >Instrument_CGW.C:1850:41: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C: In function âvoid PrintExternalMateDetailAndDist(MateDetail*, DistT*, char*, FILE*, int)â: >Instrument_CGW.C:2188:4: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C: In function âvoid PrintMateDetailsAndDists(ScaffoldGraphT*, VarArrayMateDetail*, char*, FILE*)â: >Instrument_CGW.C:2229:41: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C: In function âvoid PrintExternalMateDetailsAndDists(ScaffoldGraphT*, VarArrayMateDetail*, char*, FILE*, int)â: >Instrument_CGW.C:2250:41: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C: In function âvoid PrintMateComparison(int32, int32, int32, int32, char*, int, int, FILE*)â: >Instrument_CGW.C:2274:26: warning: format not a string literal and no format arguments >Instrument_CGW.C: In function âvoid PrintBreakpoints(VarArrayInstrumenterBreakpoint*, char*, FILE*)â: >Instrument_CGW.C:2482:57: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C: In function âvoid PrintUnitigInstrumenter(ScaffoldGraphT*, UnitigInstrumenter*, InstrumenterVerbosity, char*, FILE*)â: >Instrument_CGW.C:2551:66: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C: In function âvoid PrintContigInstrumenter(ScaffoldGraphT*, ContigInstrumenter*, InstrumenterVerbosity, char*, FILE*)â: >Instrument_CGW.C:2628:66: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C: In function âvoid PrintInferredStddevs(VarArrayfloat*, char*, FILE*)â: >Instrument_CGW.C:2658:45: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C: In function âvoid PrintUnanchoredContigIDs(ScaffoldInstrumenter*, char*, FILE*)â: >Instrument_CGW.C:2720:54: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C: In function âvoid AddInstrumenterBreakpoints(VarArrayInstrumenterBreakpoint*, VarArrayInstrumenterBreakpoint*)â: >Instrument_CGW.C:2889:53: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C: In function âvoid AddFragDetails(VarArrayFragDetail*, VarArrayFragDetail*)â: >Instrument_CGW.C:2900:41: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C: In function âvoid AddMateDetails(VarArrayMateDetail*, VarArrayMateDetail*)â: >Instrument_CGW.C:2910:41: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C: In function âint AddMateInstrumenters(MateInstrumenter*, MateInstrumenter*)â: >Instrument_CGW.C:2962:49: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C: In function âint AddInstrumenterBookkeeping(ScaffoldGraphT*, InstrumenterBookkeeping*, InstrumenterBookkeeping*, int)â: >Instrument_CGW.C:2988:55: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C:2999:56: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C:3009:56: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C: In function âint AddContigInstrumenters(ScaffoldGraphT*, ContigInstrumenter*, ContigInstrumenter*)â: >Instrument_CGW.C:3097:49: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C:3102:52: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C: In function âint AddScaffoldInstrumenters(ScaffoldGraphT*, ScaffoldInstrumenter*, ScaffoldInstrumenter*)â: >Instrument_CGW.C:3485:54: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C:3491:49: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C: In function âint AppendContigPairSets(ScaffoldGraphT*, VarArrayCP_Index*, VarArrayInstrumenterContigPair*, MateStatusPositions*)â: >Instrument_CGW.C:3625:39: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C: In function âvoid PrintScaffoldMateDetailArray(HashTable_AS*, VarArrayMateDetail*, PairOrient, PairOrient, char*, CDS_CID_t, FILE*, int)â: >Instrument_CGW.C:4169:41: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C: In function âvoid PrintUnmatedDetails(ScaffoldInstrumenter*, FILE*, int)â: >Instrument_CGW.C:4269:56: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C: In function âvoid CheckFragmentMatePairs(ScaffoldGraphT*, InstrumenterBookkeeping*, SurrogateTracker*, ScaffoldInstrumenter*, MateStatusPositionsSet*, uint32, int32*, int32*, int32*, CDS_CID_t)â: >Instrument_CGW.C:4326:62: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C:4338:62: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C: In function âint InstrumentUnitig(ScaffoldGraphT*, ScaffoldInstrumenter*, ChunkInstanceT*, float, float, UnitigInstrumenter*)â: >Instrument_CGW.C:4743:56: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C:4764:54: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C: In function âvoid PopulateICP(IntContigPairs*, CDS_CID_t, CIEdgeT*)â: >Instrument_CGW.C:4928:67: warning: format â%ldâ expects type âlong intâ, but argument 3 has type âCDS_CID_tâ >Instrument_CGW.C:4928:67: warning: format â%ldâ expects type âlong intâ, but argument 4 has type âIntContig_IDâ >Instrument_CGW.C:4934:6: warning: suggest explicit braces to avoid ambiguous âelseâ >Instrument_CGW.C:4940:6: warning: suggest explicit braces to avoid ambiguous âelseâ >Instrument_CGW.C: In function âint AddContigPlacementToScaffoldInstrumenter(ScaffoldInstrumenter*, ContigPlacement*)â: >Instrument_CGW.C:5160:62: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C: In function âint InstrumentScaffoldGraph(ScaffoldGraphT*, ScaffoldGraphInstrumenter*, int32, int32, InstrumenterVerbosity, FILE*)â: >Instrument_CGW.C:5579:44: warning: comparison between signed and unsigned integer expressions >InterleavedMerging.C: In function âvoid PrintContigElements(FILE*, VarArrayContigElement*)â: >InterleavedMerging.C:207:48: warning: comparison between signed and unsigned integer expressions >InterleavedMerging.C: In function âvoid PrintLocal_Overlaps(FILE*, VarArrayLocal_Overlap*)â: >InterleavedMerging.C:225:44: warning: comparison between signed and unsigned integer expressions >InterleavedMerging.C: In function âOverlap* LookForChunkOverlapFromContigElements(ContigElement*, ContigElement*, SEdgeT*)â: >InterleavedMerging.C:766:39: warning: missing braces around initializer for âChunkOverlapSpecTâ >InterleavedMerging.C: In function âint PopulateScaffoldAlignmentInterface(CIScaffoldT*, CIScaffoldT*, SEdgeT*, ScaffoldAlignmentInterface*)â: >InterleavedMerging.C:975:68: warning: comparison between signed and unsigned integer expressions >InterleavedMerging.C: In function âSEdgeT* MakeScaffoldAlignmentAdjustments(CIScaffoldT*, CIScaffoldT*, SEdgeT*, ScaffoldAlignmentInterface*)â: >InterleavedMerging.C:2182:44: warning: comparison between signed and unsigned integer expressions >LeastSquaresGaps_CGW.C: In function âEdgeCGW_T* FindOverlapEdgeChiSquare(ScaffoldGraphT*, NodeCGW_T*, CDS_CID_t, PairOrient, double, double, float*, float, int*, int)â: >LeastSquaresGaps_CGW.C:298:23: warning: NULL used in arithmetic >InterleavedMerging.C: In function âvoid PopulateScaffoldStuff(ScaffoldStuff*, CIScaffoldT*, SEdgeT*, LengthT)â: >InterleavedMerging.C:476:11: warning: âlastRight.LengthT::meanâ may be used uninitialized in this function >InterleavedMerging.C:476:11: warning: âlastRight.LengthT::varianceâ may be used uninitialized in this function >LeastSquaresGaps_CGW.C: In function âvoid CheckInternalEdgeStatus(ScaffoldGraphT*, CIScaffoldT*, float, float, int, int)â: >LeastSquaresGaps_CGW.C:369:15: warning: âgapDistance.LengthT::meanâ may be used uninitialized in this function >LeastSquaresGaps_CGW.C:369:15: warning: âgapDistance.LengthT::varianceâ may be used uninitialized in this function >LeastSquaresGaps_CGW.C: In function âvoid MarkInternalEdgeStatus(ScaffoldGraphT*, CIScaffoldT*, float, float, int, int, int, int)â: >LeastSquaresGaps_CGW.C:1727:15: warning: âgapDistance.LengthT::meanâ may be used uninitialized in this function >LeastSquaresGaps_CGW.C:1727:15: warning: âgapDistance.LengthT::varianceâ may be used uninitialized in this function >LeastSquaresGaps_CGW.C: In function âint IsInternalEdgeStatusVaguelyOK(EdgeCGW_T*, CDS_CID_t)â: >LeastSquaresGaps_CGW.C:1970:11: warning: âgapDistance.LengthT::varianceâ may be used uninitialized in this function >LeastSquaresGaps_CGW.C:1970:11: warning: âgapDistance.LengthT::meanâ may be used uninitialized in this function >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MergeEdges_CGW.o MergeEdges_CGW.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Output_CGW.o Output_CGW.C >Output_CGW.C: In function âvoid OutputContigsFromMultiAligns(int32)â: >Output_CGW.C:178:96: warning: too few arguments for format >Output_CGW.C:186:96: warning: too few arguments for format >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/SEdgeT_CGW.o SEdgeT_CGW.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ScaffoldGraph_CGW.o ScaffoldGraph_CGW.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/SplitChunks_CGW.o SplitChunks_CGW.C >SplitChunks_CGW.C:310:2: warning: #warning not setting the mate pair orientation correctly >ScaffoldGraph_CGW.C: In function âvoid LoadScaffoldGraphFromCheckpoint(char*, int32, int)â: >ScaffoldGraph_CGW.C:108:54: warning: comparison between signed and unsigned integer expressions >ScaffoldGraph_CGW.C: In function âvoid CheckpointScaffoldGraph(const char*, const char*)â: >ScaffoldGraph_CGW.C:198:54: warning: comparison between signed and unsigned integer expressions >ScaffoldGraph_CGW.C: In function âvoid DestroyScaffoldGraph(ScaffoldGraphT*)â: >ScaffoldGraph_CGW.C:331:54: warning: comparison between signed and unsigned integer expressions >SplitChunks_CGW.C: In function âvoid IncrementMapInterval(char*, VarArrayuint16*, int32, int32)â: >SplitChunks_CGW.C:75:41: warning: comparison between signed and unsigned integer expressions >Instrument_CGW.C: In function âvoid PrintScaffoldMateDetail(HashTable_AS*, MateDetail*, PairOrient, PairOrient, char*, CDS_CID_t, FILE*, int)â: >Instrument_CGW.C:4109:9: warning: ârowâ may be used uninitialized in this function >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/SplitScaffolds_CGW.o SplitScaffolds_CGW.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Stats_CGW.o Stats_CGW.C >Stats_CGW.C: In function âvoid GenerateLinkStats(GraphCGW_T*, char*, int)â: >Stats_CGW.C:597:39: warning: missing braces around initializer for âChunkOverlapSpecTâ >Stats_CGW.C: In function âint32 ApproximateUnitigCoverage(NodeCGW_T*)â: >Stats_CGW.C:631:47: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/TransitiveReduction_CGW.o TransitiveReduction_CGW.C >TransitiveReduction_CGW.C: In function âint FoundTransitiveEdgePath(ScaffoldGraphT*, CIEdgeT*, CIEdgeT*, ChunkInstanceT*, ChunkInstanceT*, ChunkInstanceT*, uint32, uint64)â: >TransitiveReduction_CGW.C:168:22: warning: comparison between signed and unsigned integer expressions >TransitiveReduction_CGW.C:171:21: warning: comparison between signed and unsigned integer expressions >TransitiveReduction_CGW.C:213:32: warning: comparison between signed and unsigned integer expressions >############################## AS_TER ############################## >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/terminator.o terminator.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/asmOutputFasta.o asmOutputFasta.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/asmOutputStatistics.o asmOutputStatistics.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/fragsInVars.o fragsInVars.C >asmOutputFasta.C: In function âvoid processIUM(IntUnitigMesg*)â: >asmOutputFasta.C:128:3: warning: comparison between signed and unsigned integer expressions >asmOutputFasta.C: In function âvoid processUTG(SnapUnitigMesg*)â: >asmOutputFasta.C:162:3: warning: comparison between signed and unsigned integer expressions >asmOutputFasta.C: In function âvoid processCCO(SnapConConMesg*)â: >asmOutputFasta.C:197:3: warning: comparison between signed and unsigned integer expressions >asmOutputFasta.C:225:31: warning: comparison between signed and unsigned integer expressions >asmOutputStatistics.C:341:2: warning: #warning should be a library function >fragsInVars.C: In function âint main(int, char**)â: >fragsInVars.C:313:45: warning: comparison between signed and unsigned integer expressions >fragsInVars.C:346:75: warning: format â%uâ expects type âunsigned intâ, but argument 5 has type âlong long unsigned intâ >fragsInVars.C:346:75: warning: format â%uâ expects type âunsigned intâ, but argument 6 has type âlong long unsigned intâ >fragsInVars.C:353:75: warning: format â%uâ expects type âunsigned intâ, but argument 5 has type âlong long unsigned intâ >fragsInVars.C:353:75: warning: format â%uâ expects type âunsigned intâ, but argument 6 has type âlong long unsigned intâ >fragsInVars.C:360:75: warning: format â%uâ expects type âunsigned intâ, but argument 5 has type âlong long unsigned intâ >fragsInVars.C:360:75: warning: format â%uâ expects type âunsigned intâ, but argument 6 has type âlong long unsigned intâ >fragsInVars.C:367:75: warning: format â%uâ expects type âunsigned intâ, but argument 5 has type âlong long unsigned intâ >fragsInVars.C:367:75: warning: format â%uâ expects type âunsigned intâ, but argument 6 has type âlong long unsigned intâ >fragsInVars.C: In function âvoid readVars(FILE*, var**, uint32*, uint32*, char**, uint32*, uint32*)â: >fragsInVars.C:122:26: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >fragsInVars.C:192:28: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >terminator.C: In member function âvoid IIDtoUIDmap::add(AS_IID, AS_UID)â: >terminator.C:63:16: warning: comparison between signed and unsigned integer expressions >terminator.C:71:16: warning: comparison between signed and unsigned integer expressions >terminator.C: In member function âAS_UID IIDtoUIDmap::lookup(AS_IID)â: >terminator.C:78:15: warning: comparison between signed and unsigned integer expressions >fragsInVars.C: In function âvoid readFrags(FILE*, frag**, uint32*, uint32*)â: >fragsInVars.C:85:25: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >fragsInVars.C:104:27: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >terminator.C: In function âvoid writeMDI(FILE*, bool)â: >terminator.C:118:54: warning: comparison between signed and unsigned integer expressions >terminator.C: In function âvoid writeAFG(FILE*, bool)â: >terminator.C:173:58: warning: comparison between signed and unsigned integer expressions >terminator.C:182:5: warning: comparison between signed and unsigned integer expressions >terminator.C: In function âvoid writeAMP(FILE*, bool)â: >terminator.C:214:58: warning: comparison between signed and unsigned integer expressions >terminator.C: In function âint main(int, char**)â: >terminator.C:976:90: warning: too few arguments for format >asmOutputStatistics.C: In function âvoid generateStatisticsFromGKPStore(char*, char*)â: >asmOutputStatistics.C:701:55: warning: comparison between signed and unsigned integer expressions >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/buildPosMap.o buildPosMap.C >buildPosMap.C:235:2: warning: #warning not remembering surrogate fragments >buildPosMap.C:402:2: warning: #warning should be a library function >buildPosMap.C:571:2: warning: #warning this function will overflow on large (bogus) var sequences >buildPosMap.C: In function âvoid processULK(SnapUnitigLinkMesg*)â: >buildPosMap.C:261:83: warning: comparison between signed and unsigned integer expressions >buildPosMap.C: In function âvoid processCLK(SnapContigLinkMesg*)â: >buildPosMap.C:392:83: warning: comparison between signed and unsigned integer expressions >buildPosMap.C: In function âvoid processSLK(SnapScaffoldLinkMesg*)â: >buildPosMap.C:505:27: warning: comparison between signed and unsigned integer expressions >buildPosMap.C: In function âvoid transferVar(FILE*, FILE*)â: >buildPosMap.C:582:28: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >buildPosMap.C:619:30: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >############################## AS_ENV ############################## >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/greedyFragmentTiling.o greedyFragmentTiling.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/chimChe.o chimChe.C >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/metagenomics_ovl_analyses.o metagenomics_ovl_analyses.C >In file included from chimChe.C:28:0: >kmer_utils.h: In function âvoid spellOutPacked(int, char*, int)â: >kmer_utils.h:99:3: warning: comparison between signed and unsigned integer expressions >chimChe.C: In function âchar* get_sequence(FILE*, char**, char**)â: >chimChe.C:186:24: warning: comparison between signed and unsigned integer expressions >greedyFragmentTiling.C: In function âvoid print_olap(OVSoverlap)â: >greedyFragmentTiling.C:100:61: warning: format â%5dâ expects type âintâ, but argument 5 has type âlong long intâ >greedyFragmentTiling.C:100:61: warning: format â%5dâ expects type âintâ, but argument 6 has type âlong long intâ >greedyFragmentTiling.C: In function âint isDeadEnd(int, int, double, int, int, int, int)â: >greedyFragmentTiling.C:286:5: warning: comparison between signed and unsigned integer expressions >greedyFragmentTiling.C: In function âOVSoverlap better_olap(OVSoverlap, OVSoverlap, int, int, BestMeasure, int, int, int, int, int, double)â: >greedyFragmentTiling.C:324:5: warning: comparison between signed and unsigned integer expressions >greedyFragmentTiling.C:325:5: warning: comparison between signed and unsigned integer expressions >greedyFragmentTiling.C:369:24: warning: comparison between signed and unsigned integer expressions >greedyFragmentTiling.C:381:24: warning: comparison between signed and unsigned integer expressions >greedyFragmentTiling.C: In function âint setupolaps(int, int, BestMeasure, double, int, int, int, int, int, OVSoverlap**, double, double)â: >greedyFragmentTiling.C:481:5: warning: comparison between signed and unsigned integer expressions >greedyFragmentTiling.C: In function âint ovlThickness(OVSoverlap, int, int, int)â: >greedyFragmentTiling.C:707:17: warning: comparison between signed and unsigned integer expressions >greedyFragmentTiling.C: In function âint main(int, char**)â: >greedyFragmentTiling.C:916:53: warning: format â%sâ expects type âchar*â, but argument 3 has type âchar (*)[16777216]â >greedyFragmentTiling.C:944:54: warning: comparison between signed and unsigned integer expressions >greedyFragmentTiling.C:1011:38: warning: comparison between signed and unsigned integer expressions >greedyFragmentTiling.C:1014:47: warning: comparison between signed and unsigned integer expressions >greedyFragmentTiling.C:1023:30: warning: comparison between signed and unsigned integer expressions >greedyFragmentTiling.C:1025:16: warning: comparison between signed and unsigned integer expressions >greedyFragmentTiling.C:1119:38: warning: comparison between signed and unsigned integer expressions >greedyFragmentTiling.C:1122:47: warning: comparison between signed and unsigned integer expressions >greedyFragmentTiling.C:1131:16: warning: comparison between signed and unsigned integer expressions >greedyFragmentTiling.C: In function âOVSoverlap better_olap(OVSoverlap, OVSoverlap, int, int, BestMeasure, int, int, int, int, int, double)â: >greedyFragmentTiling.C:431:1: warning: control reaches end of non-void function >metagenomics_ovl_analyses.C: In function âint main(int, char**)â: >metagenomics_ovl_analyses.C:706:3: warning: comparison between signed and unsigned integer expressions >metagenomics_ovl_analyses.C:742:69: warning: format â%5dâ expects type âintâ, but argument 6 has type âlong long intâ >metagenomics_ovl_analyses.C:742:69: warning: format â%5dâ expects type âintâ, but argument 7 has type âlong long intâ >metagenomics_ovl_analyses.C:745:20: warning: comparison between signed and unsigned integer expressions >metagenomics_ovl_analyses.C:751:25: warning: comparison between signed and unsigned integer expressions >metagenomics_ovl_analyses.C:769:69: warning: format â%5dâ expects type âintâ, but argument 8 has type âlong long intâ >metagenomics_ovl_analyses.C:769:69: warning: format â%5dâ expects type âintâ, but argument 9 has type âlong long intâ >metagenomics_ovl_analyses.C:772:26: warning: comparison between signed and unsigned integer expressions >metagenomics_ovl_analyses.C:776:104: warning: comparison between signed and unsigned integer expressions >metagenomics_ovl_analyses.C:838:17: warning: comparison between signed and unsigned integer expressions >############################## AS_ARD ############################## >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/loadAssembly.o loadAssembly.cc >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/getAssembly.o getAssembly.cc >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Sybase.o Sybase.cc >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_ARD_database.o AS_ARD_database.cc >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/DBTextOutput.o DBTextOutput.cc >AS_ARD_database.cc:106:2: warning: #warning source is unused in MPS >AS_ARD_database.cc:222:2: warning: #warning source is unused in mps >In file included from AS_ARD_database.hh:29:0, > from loadAssembly.cc:34: >IAssemblyDB.hh: In constructor âAS_ARD::IAssemblyDB::IAssemblyDB(AS_ARD::IDBOutput*)â: >IAssemblyDB.hh:48:22: warning: âAS_ARD::IAssemblyDB::dbâ will be initialized after >IAssemblyDB.hh:39:14: warning: âint AS_ARD::IAssemblyDB::numMDIâ >IAssemblyDB.hh:51:10: warning: when initialized here >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/BCPOutput.o BCPOutput.cc >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/SQLOutput.o SQLOutput.cc >In file included from AS_ARD_database.hh:29:0, > from AS_ARD_database.cc:30: >IAssemblyDB.hh: In constructor âAS_ARD::IAssemblyDB::IAssemblyDB(AS_ARD::IDBOutput*)â: >IAssemblyDB.hh:48:22: warning: âAS_ARD::IAssemblyDB::dbâ will be initialized after >IAssemblyDB.hh:39:14: warning: âint AS_ARD::IAssemblyDB::numMDIâ >IAssemblyDB.hh:51:10: warning: when initialized here >AS_ARD_database.cc: In member function âbool AS_ARD::AS_ARD_database::addSCF2SDB(SnapScaffoldMesg*)â: >AS_ARD_database.cc:376:20: warning: comparison between signed and unsigned integer expressions >############################## AS_REF ############################## >g++ -O2 -pipe -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -DANSI_C -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fPIC -pthread -O2 -Wall -Wimplicit -Wno-write-strings -Wno-unused -Wno-char-subscripts -march=i686 -DX86_GCC_LINUX -c -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_RUN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UTL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_UID -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MSG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_PER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_GKP -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OBT -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_MER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVL -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_OVS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ALN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGB -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_BOG -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REZ -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CNS -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_LIN -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_CGW -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_TER -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ENV -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_ARD -I/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src/AS_REF -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/buildRefContigs.o buildRefContigs.C >buildRefContigs.C:258:2: warning: #warning stddev computation is bogus >buildRefContigs.C: In function âvoid outputDistances()â: >buildRefContigs.C:188:19: warning: comparison between signed and unsigned integer expressions >buildRefContigs.C:200:19: warning: comparison between signed and unsigned integer expressions >buildRefContigs.C: In function âvoid outputFragments()â: >buildRefContigs.C:289:15: warning: comparison between signed and unsigned integer expressions >buildRefContigs.C: In function âvoid outputMates()â: >buildRefContigs.C:321:15: warning: comparison between signed and unsigned integer expressions >buildRefContigs.C: In function âvoid readMapping(char*)â: >buildRefContigs.C:63:20: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >buildRefContigs.C:78:22: warning: ignoring return value of âchar* fgets(char*, int, FILE*)â, declared with attribute warn_unused_result >################### libCA.a ##################### >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > ar rvs /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a AS_global.o >ar: creating /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a >a - AS_global.o >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > ar rvs /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a AS_global.o >r - AS_global.o >* Make Target is libs >############################## AS_RUN ############################## >make[1]: Nothing to be done for `libs'. >############################## AS_UTL ############################## >################### libAS_UTL.a ##################### >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > ar rvs /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libAS_UTL.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_Hash.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_heap.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_Var.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_rand.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_interval.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/UnionFind_AS.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_skiplist.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_alloc.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_fileIO.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_qsort_mt.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_fasta.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_UID.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_reverseComplement.o >ar: creating /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libAS_UTL.a >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_Hash.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_heap.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_Var.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_rand.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_interval.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/UnionFind_AS.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_skiplist.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_alloc.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_fileIO.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_qsort_mt.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_fasta.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_UID.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_reverseComplement.o >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > ar rvs /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_Hash.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_heap.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_Var.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_rand.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_interval.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/UnionFind_AS.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_skiplist.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_alloc.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_fileIO.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_qsort_mt.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_fasta.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_UID.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_reverseComplement.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_Hash.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_heap.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_Var.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_rand.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_interval.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/UnionFind_AS.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_skiplist.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_alloc.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_fileIO.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_qsort_mt.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_fasta.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_UID.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_UTL_reverseComplement.o >############################## AS_UID ############################## >################### libAS_UID.a ##################### >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > ar rvs /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libAS_UID.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/SYS_UIDclient_LOCAL.o >ar: creating /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libAS_UID.a >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/SYS_UIDclient_LOCAL.o >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > ar rvs /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/SYS_UIDclient_LOCAL.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/SYS_UIDclient_LOCAL.o >############################## AS_MSG ############################## >################### libAS_MSG.a ##################### >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > ar rvs /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libAS_MSG.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_MSG_pmesg.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_MSG_pmesg1.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_MSG_pmesg2.o >ar: creating /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libAS_MSG.a >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_MSG_pmesg.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_MSG_pmesg1.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_MSG_pmesg2.o >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > ar rvs /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_MSG_pmesg.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_MSG_pmesg1.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_MSG_pmesg2.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_MSG_pmesg.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_MSG_pmesg1.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_MSG_pmesg2.o >############################## AS_PER ############################## >################### libAS_PER.a ##################### >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > ar rvs /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libAS_PER.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_genericStore.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkLibrary.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_IID.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_PLC.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_UID.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_clearRange.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_fragments.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_load.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_partition.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStream.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_encodeSequenceQuality.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_asmStore.o >ar: creating /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libAS_PER.a >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_genericStore.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkLibrary.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_IID.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_PLC.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_UID.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_clearRange.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_fragments.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_load.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_partition.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStream.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_encodeSequenceQuality.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_asmStore.o >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > ar rvs /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_genericStore.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkLibrary.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_IID.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_PLC.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_UID.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_clearRange.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_fragments.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_load.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_partition.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStream.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_encodeSequenceQuality.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_asmStore.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_genericStore.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkLibrary.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_IID.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_PLC.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_UID.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_clearRange.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_fragments.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_load.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStore_partition.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_gkStream.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_encodeSequenceQuality.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_PER_asmStore.o >############################## AS_GKP ############################## >make[1]: Nothing to be done for `libs'. >############################## AS_OBT ############################## >################### libAS_OBT.a ##################### >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > ar rvs /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libAS_OBT.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OBT_acceptableOverlap.o >ar: creating /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libAS_OBT.a >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OBT_acceptableOverlap.o >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > ar rvs /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OBT_acceptableOverlap.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OBT_acceptableOverlap.o >############################## AS_MER ############################## >make[1]: Nothing to be done for `libs'. >############################## AS_OVL ############################## >################### libAS_OVL.a ##################### >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > ar rvs /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libAS_OVL.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/SharedOVL.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVL_delcher.o >ar: creating /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libAS_OVL.a >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/SharedOVL.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVL_delcher.o >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > ar rvs /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/SharedOVL.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVL_delcher.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/SharedOVL.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVL_delcher.o >############################## AS_OVS ############################## >################### libAS_OVS.a ##################### >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > ar rvs /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libAS_OVS.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVS_overlap.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVS_overlapFile.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVS_overlapStore.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVS_overlapStats.o >ar: creating /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libAS_OVS.a >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVS_overlap.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVS_overlapFile.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVS_overlapStore.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVS_overlapStats.o >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > ar rvs /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVS_overlap.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVS_overlapFile.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVS_overlapStore.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVS_overlapStats.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVS_overlap.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVS_overlapFile.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVS_overlapStore.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVS_overlapStats.o >############################## AS_ALN ############################## >################### libAS_ALN.a ##################### >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > ar rvs /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libAS_ALN.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_ALN_dpaligner.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_ALN_qvaligner.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_ALN_loverlapper.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_ALN_pieceOlap.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_ALN_forcns.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CA_ALN_local.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CA_ALN_overlap.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CA_ALN_scafcomp.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_ALN_bruteforcedp.o >ar: creating /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libAS_ALN.a >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_ALN_dpaligner.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_ALN_qvaligner.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_ALN_loverlapper.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_ALN_pieceOlap.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_ALN_forcns.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CA_ALN_local.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CA_ALN_overlap.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CA_ALN_scafcomp.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_ALN_bruteforcedp.o >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > ar rvs /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_ALN_dpaligner.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_ALN_qvaligner.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_ALN_loverlapper.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_ALN_pieceOlap.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_ALN_forcns.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CA_ALN_local.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CA_ALN_overlap.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CA_ALN_scafcomp.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_ALN_bruteforcedp.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_ALN_dpaligner.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_ALN_qvaligner.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_ALN_loverlapper.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_ALN_pieceOlap.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_ALN_forcns.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CA_ALN_local.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CA_ALN_overlap.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CA_ALN_scafcomp.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_ALN_bruteforcedp.o >############################## AS_CGB ############################## >################### libAS_CGB.a ##################### >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > ar rvs /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libAS_CGB.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_histo.o >ar: creating /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libAS_CGB.a >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_histo.o >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > ar rvs /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_histo.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_histo.o >############################## AS_BOG ############################## >make[1]: Nothing to be done for `libs'. >############################## AS_REZ ############################## >################### libAS_REZ.a ##################### >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > ar rvs /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libAS_REZ.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ConsistencyChecksREZ.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/GapFillREZ.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/GapWalkerREZ.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/StatisticsREZ.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/UpdateREZ.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/UtilsREZ.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MicroHetREZ.o >ar: creating /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libAS_REZ.a >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ConsistencyChecksREZ.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/GapFillREZ.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/GapWalkerREZ.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/StatisticsREZ.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/UpdateREZ.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/UtilsREZ.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MicroHetREZ.o >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > ar rvs /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ConsistencyChecksREZ.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/GapFillREZ.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/GapWalkerREZ.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/StatisticsREZ.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/UpdateREZ.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/UtilsREZ.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MicroHetREZ.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ConsistencyChecksREZ.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/GapFillREZ.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/GapWalkerREZ.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/StatisticsREZ.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/UpdateREZ.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/UtilsREZ.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MicroHetREZ.o >############################## AS_CNS ############################## >################### libAS_CNS.a ##################### >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > ar rvs /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libAS_CNS.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Array_CNS.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MultiAlign.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MultiAlignPrint.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MultiAlignStore.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MultiAlignment_CNS.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/RefreshMANode.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AbacusRefine.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ApplyAlignment.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/BaseCall.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/GetAlignmentTrace.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MergeMultiAligns.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MergeRefine.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MultiAlignContig.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MultiAlignUnitig.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/PrintAlignment.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ReplaceEndUnitigInContig.o >ar: creating /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libAS_CNS.a >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Array_CNS.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MultiAlign.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MultiAlignPrint.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MultiAlignStore.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MultiAlignment_CNS.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/RefreshMANode.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AbacusRefine.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ApplyAlignment.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/BaseCall.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/GetAlignmentTrace.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MergeMultiAligns.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MergeRefine.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MultiAlignContig.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MultiAlignUnitig.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/PrintAlignment.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ReplaceEndUnitigInContig.o >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > ar rvs /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Array_CNS.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MultiAlign.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MultiAlignPrint.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MultiAlignStore.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MultiAlignment_CNS.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/RefreshMANode.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AbacusRefine.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ApplyAlignment.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/BaseCall.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/GetAlignmentTrace.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MergeMultiAligns.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MergeRefine.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MultiAlignContig.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MultiAlignUnitig.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/PrintAlignment.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ReplaceEndUnitigInContig.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Array_CNS.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MultiAlign.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MultiAlignPrint.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MultiAlignStore.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MultiAlignment_CNS.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/RefreshMANode.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AbacusRefine.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ApplyAlignment.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/BaseCall.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/GetAlignmentTrace.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MergeMultiAligns.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MergeRefine.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MultiAlignContig.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MultiAlignUnitig.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/PrintAlignment.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ReplaceEndUnitigInContig.o >############################## AS_LIN ############################## >################### libAS_LIN.a ##################### >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > ar rvs /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libAS_LIN.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dpbtrf.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dpbtrs.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/daxpy.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dgemm.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dgemv.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dlamch.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dpbtf2.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dpotf2.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dptrfs.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dpttrs.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dsyr.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dsyrk.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dtbsv.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dtrsm.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/idamax.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ilaenv.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/lsame.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/xerbla.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/s_copy.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/s_cmp.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ddot.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dscal.o >ar: creating /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libAS_LIN.a >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dpbtrf.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dpbtrs.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/daxpy.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dgemm.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dgemv.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dlamch.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dpbtf2.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dpotf2.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dptrfs.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dpttrs.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dsyr.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dsyrk.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dtbsv.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dtrsm.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/idamax.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ilaenv.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/lsame.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/xerbla.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/s_copy.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/s_cmp.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ddot.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dscal.o >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > ar rvs /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dpbtrf.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dpbtrs.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/daxpy.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dgemm.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dgemv.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dlamch.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dpbtf2.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dpotf2.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dptrfs.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dpttrs.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dsyr.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dsyrk.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dtbsv.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dtrsm.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/idamax.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ilaenv.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/lsame.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/xerbla.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/s_copy.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/s_cmp.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ddot.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dscal.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dpbtrf.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dpbtrs.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/daxpy.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dgemm.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dgemv.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dlamch.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dpbtf2.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dpotf2.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dptrfs.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dpttrs.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dsyr.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dsyrk.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dtbsv.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dtrsm.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/idamax.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ilaenv.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/lsame.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/xerbla.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/s_copy.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/s_cmp.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ddot.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dscal.o >############################## AS_CGW ############################## >################### libAS_CGW.a ##################### >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > ar rvs /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libAS_CGW.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Globals_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGW_EdgeDiagnostics.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CIEdgeT_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CIScaffoldT_Biconnected_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CIScaffoldT_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CIScaffoldT_Cleanup_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CIScaffoldT_Merge_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Celamy_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ChunkOverlap_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ContigT_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/DemoteUnitigsWithRBP_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/fragmentPlacement.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/GraphCGW_T.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Input_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Instrument_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/InterleavedMerging.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/LeastSquaresGaps_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MergeEdges_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Output_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/SEdgeT_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ScaffoldGraph_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/SplitChunks_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/SplitScaffolds_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Stats_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/TransitiveReduction_CGW.o >ar: creating /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libAS_CGW.a >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Globals_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGW_EdgeDiagnostics.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CIEdgeT_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CIScaffoldT_Biconnected_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CIScaffoldT_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CIScaffoldT_Cleanup_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CIScaffoldT_Merge_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Celamy_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ChunkOverlap_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ContigT_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/DemoteUnitigsWithRBP_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/fragmentPlacement.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/GraphCGW_T.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Input_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Instrument_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/InterleavedMerging.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/LeastSquaresGaps_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MergeEdges_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Output_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/SEdgeT_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ScaffoldGraph_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/SplitChunks_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/SplitScaffolds_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Stats_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/TransitiveReduction_CGW.o >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > ar rvs /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Globals_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGW_EdgeDiagnostics.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CIEdgeT_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CIScaffoldT_Biconnected_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CIScaffoldT_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CIScaffoldT_Cleanup_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CIScaffoldT_Merge_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Celamy_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ChunkOverlap_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ContigT_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/DemoteUnitigsWithRBP_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/fragmentPlacement.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/GraphCGW_T.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Input_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Instrument_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/InterleavedMerging.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/LeastSquaresGaps_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MergeEdges_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Output_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/SEdgeT_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ScaffoldGraph_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/SplitChunks_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/SplitScaffolds_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Stats_CGW.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/TransitiveReduction_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Globals_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGW_EdgeDiagnostics.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CIEdgeT_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CIScaffoldT_Biconnected_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CIScaffoldT_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CIScaffoldT_Cleanup_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CIScaffoldT_Merge_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Celamy_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ChunkOverlap_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ContigT_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/DemoteUnitigsWithRBP_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/fragmentPlacement.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/GraphCGW_T.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Input_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Instrument_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/InterleavedMerging.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/LeastSquaresGaps_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/MergeEdges_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Output_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/SEdgeT_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ScaffoldGraph_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/SplitChunks_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/SplitScaffolds_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Stats_CGW.o >a - /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/TransitiveReduction_CGW.o >############################## AS_TER ############################## >make[1]: Nothing to be done for `libs'. >############################## AS_ENV ############################## >make[1]: Nothing to be done for `libs'. >############################## AS_ARD ############################## >make[1]: Nothing to be done for `libs'. >############################## AS_REF ############################## >make[1]: Nothing to be done for `libs'. >* Make Target is progs >############################## AS_RUN ############################## >++++++++++++++++++++ fragmentDepth ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/fragmentDepth /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/fragmentDepth.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ markUniqueUnique ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/markUniqueUnique /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/markUniqueUnique.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >############################## AS_UTL ############################## >make[1]: Nothing to be done for `progs'. >############################## AS_UID ############################## >++++++++++++++++++++ uidclient ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/uidclient /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/uidclient.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libAS_UID.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libAS_UTL.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ uidserver ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/uidserver /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/uidserver.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libAS_UID.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libAS_UTL.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >############################## AS_MSG ############################## >++++++++++++++++++++ remove_fragment ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/remove_fragment /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/remove_fragment.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ extractmessages ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/extractmessages /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ExtractMessages.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >############################## AS_PER ############################## >make[1]: Nothing to be done for `progs'. >############################## AS_GKP ############################## >++++++++++++++++++++ gatekeeper ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/gatekeeper /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_GKP_main.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_GKP_buildPartition.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_GKP_checkLibrary.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_GKP_checkFrag.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_GKP_checkLink.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_GKP_checkPlace.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_GKP_dump.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_GKP_edit.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_GKP_errors.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_GKP_illumina.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ gatekeeperbench ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/gatekeeperbench /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_GKP_bench.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ sffToCA ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/sffToCA /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/sffToCA.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ fastqToCA ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/fastqToCA /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/fastqToCA.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ fastqSample ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/fastqSample /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/fastqSample.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >############################## AS_OBT ############################## >++++++++++++++++++++ initialTrim ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/initialTrim /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/initialTrim.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/trim.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ merge-trimming ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/merge-trimming /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/merge-trimming.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/trim.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ overlapMask ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/overlapMask /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/overlapMask.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/util++.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/readOverlap.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ consolidate ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/consolidate /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/consolidate.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/util++.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/readOverlap.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ chimera ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/chimera /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/chimera.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/util++.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/readOverlap.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ deduplicate ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/deduplicate /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/deduplicate.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/util++.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/readOverlap.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ removeMateOverlap ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/removeMateOverlap /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/removeMateOverlap.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/util++.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/readOverlap.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >############################## AS_MER ############################## >++++++++++++++++++++ meryl ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/meryl /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/meryl.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_MER_gkpStore_to_FastABase.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_MER_gkpStoreChain.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libmerylguts.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libkmer.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libmeryl.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libseq.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libbio.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libutil.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 -lpthread >++++++++++++++++++++ mercy ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/mercy /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/mercy.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libmerylguts.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libkmer.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libmeryl.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libseq.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libbio.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libutil.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 -lpthread >/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libseq.a(seqStore.o): In function `constructSeqStore(char*, seqCache*)': >seqStore.C:(.text+0x1f90): warning: memset used with constant zero length parameter; this could be due to transposed parameters >++++++++++++++++++++ overmerry ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/overmerry /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/overmerry.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_MER_gkpStore_to_FastABase.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libmerylguts.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libkmer.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libmeryl.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libseq.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libbio.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libutil.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 -lpthread >++++++++++++++++++++ merTrim ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/merTrim /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/merTrim.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_MER_gkpStore_to_FastABase.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libmerylguts.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libkmer.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libmeryl.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libseq.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libbio.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libutil.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 -lpthread >/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libseq.a(seqStore.o): In function `constructSeqStore(char*, seqCache*)': >seqStore.C:(.text+0x1f90): warning: memset used with constant zero length parameter; this could be due to transposed parameters >++++++++++++++++++++ estimate-mer-threshold ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/estimate-mer-threshold /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/estimate-mer-threshold.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_MER_gkpStore_to_FastABase.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libmerylguts.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libkmer.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libmeryl.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libseq.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libbio.a /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libutil.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 -lpthread >/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libseq.a(seqStore.o): In function `constructSeqStore(char*, seqCache*)': >seqStore.C:(.text+0x1f90): warning: memset used with constant zero length parameter; this could be due to transposed parameters >/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/kmer/Linux-i686/lib/libseq.a(seqStore.o): In function `constructSeqStore(char*, seqCache*)': >seqStore.C:(.text+0x1f90): warning: memset used with constant zero length parameter; this could be due to transposed parameters >############################## AS_OVL ############################## >++++++++++++++++++++ overlap ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/overlap /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVL_overlap.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVL_driver.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVL_delcher.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 -lpthread >++++++++++++++++++++ overlap_ca ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/overlap_ca /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVL_overlap_ca.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVL_driver_ca.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVL_delcher.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 -lpthread >++++++++++++++++++++ olap-from-seeds ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/olap-from-seeds /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/OlapFromSeedsOVL.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVL_delcher.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 -lpthread >++++++++++++++++++++ correct-frags ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/correct-frags /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/FragCorrectOVL.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVL_delcher.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 -lpthread >++++++++++++++++++++ show-corrects ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/show-corrects /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ShowCorrectsOVL.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVL_delcher.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 -lpthread >++++++++++++++++++++ correct-olaps ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/correct-olaps /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CorrectOlapsOVL.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVL_delcher.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 -lpthread >++++++++++++++++++++ cat-corrects ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/cat-corrects /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CatCorrectsOVL.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVL_delcher.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 -lpthread >++++++++++++++++++++ cat-erates ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/cat-erates /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/CatEratesOVL.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_OVL_delcher.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 -lpthread >############################## AS_OVS ############################## >++++++++++++++++++++ overlapStore ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/overlapStore /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/overlapStore.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/overlapStore_build.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/overlapStore_merge.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/overlapStore_dump.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/overlapStore_erates.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ overlapStats ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/overlapStats /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/overlapStats.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ convertOverlap ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/convertOverlap /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/convertOverlap.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ filterOverlap ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/filterOverlap /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/filterOverlap.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >############################## AS_ALN ############################## >make[1]: Nothing to be done for `progs'. >############################## AS_CGB ############################## >++++++++++++++++++++ unitigger ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/unitigger /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_unitigger.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_FGB_main.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_FGB_io.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_histo.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_fga.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_fgb.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_FGB_hanging_fragment.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_FGB_contained.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_traversal.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_walk.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_edgemate.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_main.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_cgb.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_classify.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_chimeras.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_cga.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_Bubble.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_Bubble_Graph.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_Bubble_VertexSet.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_Bubble_dfs.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_Bubble_Popper.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGB_Bubble_PopperMethods.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >############################## AS_BOG ############################## >++++++++++++++++++++ buildUnitigs ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/buildUnitigs /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/BuildUnitigs.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_BOG_BestOverlapGraph.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_BOG_ChunkGraph.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_BOG_MateChecker.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_BOG_Unitig.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_BOG_UnitigGraph.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ fixUnitigs ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/fixUnitigs /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/fixUnitigs.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ scoreOverlaps ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/scoreOverlaps /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/scoreOverlaps.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >############################## AS_REZ ############################## >make[1]: Nothing to be done for `progs'. >############################## AS_CNS ############################## >++++++++++++++++++++ utgcns ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/utgcns /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/utgcns.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ ctgcns ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/ctgcns /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/ctgcns.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ tigStore ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/tigStore /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/tigStore.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >############################## AS_LIN ############################## >make[1]: Nothing to be done for `progs'. >############################## AS_CGW ############################## >++++++++++++++++++++ cgw ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/cgw /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_CGW_main.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ extendClearRanges ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/extendClearRanges /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/eCR.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/eCR-examineGap.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/eCR-diagnostic.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ extendClearRangesPartition ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/extendClearRangesPartition /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/eCR-partition.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ resolveSurrogates ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/resolveSurrogates /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/resolveSurrogates.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ dumpCloneMiddles ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/dumpCloneMiddles /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dumpCloneMiddles.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ dumpSingletons ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/dumpSingletons /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/dumpSingletons.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ exploreGapStructure ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/exploreGapStructure /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/exploreGapStructure.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ frgs2clones ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/frgs2clones /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/frgs2clones.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >############################## AS_TER ############################## >++++++++++++++++++++ terminator ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/terminator /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/terminator.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ asmOutputFasta ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/asmOutputFasta /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/asmOutputFasta.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ asmOutputStatistics ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/asmOutputStatistics /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/asmOutputStatistics.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ fragsInVars ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/fragsInVars /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/fragsInVars.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ buildPosMap ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/buildPosMap /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/buildPosMap.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >############################## AS_ENV ############################## >++++++++++++++++++++ greedyFragmentTiling ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/greedyFragmentTiling /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/greedyFragmentTiling.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ metagenomics_ovl_analyses ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/metagenomics_ovl_analyses /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/metagenomics_ovl_analyses.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ chimChe ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/chimChe /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/chimChe.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >############################## AS_ARD ############################## >++++++++++++++++++++ loadAssembly ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/loadAssembly /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/loadAssembly.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Sybase.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/AS_ARD_database.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/DBTextOutput.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/BCPOutput.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/SQLOutput.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >++++++++++++++++++++ getAssembly ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/getAssembly /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/getAssembly.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/Sybase.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >############################## AS_REF ############################## >++++++++++++++++++++ buildRefContigs ++++++++++++++++++++++ >cd /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj; \ > g++ -o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/bin/buildRefContigs /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/obj/buildRefContigs.o /var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib/libCA.a -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/Linux-i686/lib -L/usr/X11R6/lib -Wl,-O1 -Wl,--as-needed -Wl,--hash-style=gnu -pthread -lm -Wl,-O1 -march=i686 -pthread -lm -Wl,-O1 -march=i686 >* Make Target is all >############################## AS_RUN ############################## >############################## AS_UTL ############################## >############################## AS_UID ############################## >############################## AS_MSG ############################## >############################## AS_PER ############################## >############################## AS_GKP ############################## >############################## AS_OBT ############################## >############################## AS_MER ############################## >############################## AS_OVL ############################## >############################## AS_OVS ############################## >############################## AS_ALN ############################## >############################## AS_CGB ############################## >############################## AS_BOG ############################## >############################## AS_REZ ############################## >############################## AS_CNS ############################## >############################## AS_LIN ############################## >############################## AS_CGW ############################## >############################## AS_TER ############################## >############################## AS_ENV ############################## >############################## AS_ARD ############################## >############################## AS_REF ############################## >make: Leaving directory `/var/tmp/portage/sci-biology/wgs-assembler-6.1/work/wgs-6.1/src' >>>> Source compiled. >>>> Test phase [none]: sci-biology/wgs-assembler-6.1 > >>>> Install wgs-assembler-6.1 into /var/tmp/portage/sci-biology/wgs-assembler-6.1/image/ category sci-biology >>>> Completed installing wgs-assembler-6.1 into /var/tmp/portage/sci-biology/wgs-assembler-6.1/image/ > ><?xml version="1.0" encoding="UTF-8"?> ><!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> ><pkgmetadata> > <maintainer> > <email>weaver@gentoo.org</email> > <name>Andrey Kislyuk</name> > </maintainer> > <herd>sci-biology</herd> ></pkgmetadata> >strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment > usr/bin/utgcns > usr/bin/buildPosMap > usr/bin/overlap > usr/bin/fastqToCA > usr/bin/estimate-mer-threshold > usr/bin/removeMateOverlap > usr/bin/percentCovered > usr/bin/filterOverlap > usr/bin/terminator > usr/bin/chimChe > usr/bin/tigStore > usr/bin/extendClearRanges > usr/bin/gatekeeper > usr/bin/chimera > usr/bin/buildUnitigs > usr/bin/test-merStream > usr/bin/cat-erates > usr/bin/show-corrects > usr/bin/extendClearRangesPartition > usr/bin/dumpCloneMiddles > usr/bin/maskMers > usr/bin/mask > usr/bin/existDB > usr/bin/fragmentDepth > usr/bin/gatekeeperbench > usr/bin/olap-from-seeds > usr/bin/mapMers-depth > usr/bin/scoreOverlaps > usr/bin/test-seqStream > usr/bin/mapMers > usr/bin/getAssembly > usr/bin/sffToCA > usr/bin/remove_fragment > usr/bin/metagenomics_ovl_analyses > usr/bin/mercy > usr/bin/ctgcns > usr/bin/resolveSurrogates > usr/bin/asmOutputFasta > usr/bin/asmMerQC > usr/bin/loadAssembly > usr/bin/buildRefContigs > usr/bin/test-seqCache > usr/bin/extractmessages > usr/bin/overlapMask > usr/bin/overlapStats > usr/bin/overlapStore > usr/bin/greedyFragmentTiling > usr/bin/merge-trimming > usr/bin/correct-frags > usr/bin/fragsInVars > usr/bin/overlap_ca > usr/bin/unitigger > usr/bin/deduplicate > usr/bin/cgw > usr/bin/overmerry > usr/bin/consolidate > usr/bin/meryl > usr/bin/asmOutputStatistics > usr/bin/convertOverlap > usr/bin/merTrim > usr/bin/fixUnitigs > usr/bin/mt19937ar-test > usr/bin/uidclient > usr/bin/fastqSample > usr/bin/exploreGapStructure > usr/bin/dumpSingletons > usr/bin/cat-corrects > usr/bin/positionDB > usr/bin/frgs2clones > usr/bin/markUniqueUnique > usr/bin/correct-olaps > usr/bin/testPositionBias > usr/bin/initialTrim > usr/bin/uidserver > usr/lib/libAS_CNS.a > usr/lib/libAS_UTL.a > usr/lib/libAS_LIN.a > usr/lib/libAS_PER.a > usr/lib/libAS_MSG.a > usr/lib/libCA.a > usr/lib/libAS_ALN.a > usr/lib/libAS_OBT.a > usr/lib/libAS_OVS.a > usr/lib/libAS_OVL.a > usr/lib/libAS_REZ.a > usr/lib/libAS_CGB.a > usr/lib/libAS_CGW.a > usr/lib/libAS_UID.a > usr/lib/wgs-assembler/libkmer.a > usr/lib/wgs-assembler/libkaz.a > usr/lib/wgs-assembler/libmeryl.a > usr/lib/wgs-assembler/libutil.a > usr/lib/wgs-assembler/libseq.a > usr/lib/wgs-assembler/libmt19937ar.a > usr/lib/wgs-assembler/libbio.a > usr/lib/wgs-assembler/libmerylguts.a > > * QA Notice: Files built without respecting LDFLAGS have been detected > * Please include the following list of files in your report: > * /usr/bin/percentCovered > * /usr/bin/test-merStream > * /usr/bin/maskMers > * /usr/bin/mask > * /usr/bin/existDB > * /usr/bin/mapMers-depth > * /usr/bin/test-seqStream > * /usr/bin/mapMers > * /usr/bin/asmMerQC > * /usr/bin/test-seqCache > * /usr/bin/mt19937ar-test > * /usr/bin/positionDB > * /usr/bin/testPositionBias > > * This package will overwrite one or more files that may belong to other > * packages (see list below). You can use a command such as `portageq > * owners / <filename>` to identify the installed package that owns a > * file. If portageq reports that only one package owns a file then do > * NOT file a bug report. A bug report is only useful if it identifies at > * least two or more packages that are known to install the same file(s). > * If a collision occurs and you can not explain where the file came from > * then you should simply ignore the collision since there is not enough > * information to determine if a real problem exists. Please do NOT file > * a bug report at http://bugs.gentoo.org unless you report exactly which > * two packages install the same file(s). Once again, please do NOT file > * a bug report unless you have completely understood the above message. > * > * Detected file collision(s): > * > * /usr/bin/terminator > * > * Searching all installed packages for file collisions... > * > * Press Ctrl-C to Stop > * > * x11-terms/terminator-0.94 > * /usr/bin/terminator > * > * Package 'sci-biology/wgs-assembler-6.1' NOT merged due to file > * collisions. If necessary, refer to your elog messages for the whole > * content of the above message.
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